https://launchpad.net/ubuntu/+source/cctbx/2023.12+ds2+~3.17.0+ds1-4build2/+build/27987400 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-riscv64-063 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu22.04.1 python3-lpbuildd_236~650~ubuntu22.04.1 sbuild_0.81.2ubuntu6 git-build-recipe_0.3.6 git_1:2.34.1-1ubuntu1.10 dpkg-dev_1.21.1ubuntu2.3 python3-debian_0.1.43ubuntu1.1. Syncing the system clock with the buildd NTP service... 2 Apr 19:04:59 ntpdate[2292]: adjust time server 10.211.37.1 offset -0.003926 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27987400 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-27987400 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27987400 Starting target for build PACKAGEBUILD-27987400 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27987400 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27987400 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27987400 Updating target for build PACKAGEBUILD-27987400 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1351 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [14.6 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6103 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/main riscv64 Packages [667 kB] Get:10 http://ftpmaster.internal/ubuntu noble-updates/main Translation-en [242 kB] Get:11 http://ftpmaster.internal/ubuntu noble-updates/universe riscv64 Packages [4442 kB] Get:12 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [1693 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [638 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [229 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [2890 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [1607 kB] Fetched 35.5 MB in 40s (885 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-riscv64-linux-gnu cpp-riscv64-linux-gnu g++-13-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-13-riscv64-linux-gnu gcc-14-base gcc-riscv64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libubsan1 libunistring5 perl-modules-5.38 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-riscv64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libjansson4 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblzma5 libmd0 libmount1 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base pinentry-curses procps psmisc readline-common sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 153 upgraded, 24 newly installed, 14 to remove and 0 not upgraded. Need to get 113 MB of archives. After this operation, 70.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnsl-dev riscv64 1.3.0-3build3 [137 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main riscv64 libcrypt-dev riscv64 1:4.4.36-4 [322 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6-dev riscv64 2.39-0ubuntu8 [3458 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-dev-bin riscv64 2.39-0ubuntu8 [20.0 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtirpc-dev riscv64 1.3.4+ds-1.1build1 [350 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libnss-nisplus riscv64 1.3-5build1 [23.8 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtirpc3t64 riscv64 1.3.4+ds-1.1build1 [92.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgssapi-krb5-2 riscv64 1.20.1-6ubuntu2 [153 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkrb5-3 riscv64 1.20.1-6ubuntu2 [385 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libk5crypto3 riscv64 1.20.1-6ubuntu2 [108 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkrb5support0 riscv64 1.20.1-6ubuntu2 [36.7 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main riscv64 libacl1 riscv64 2.3.2-1 [18.7 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapparmor1 riscv64 4.0.0-beta3-0ubuntu3 [51.2 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcap-ng0 riscv64 0.8.4-2build2 [15.5 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libaudit1 riscv64 1:3.1.2-2.1build1 [47.9 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libblkid1 riscv64 2.39.3-9ubuntu4 [204 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main riscv64 libcap2 riscv64 1:2.66-5ubuntu1 [31.7 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main riscv64 libcrypt1 riscv64 1:4.4.36-4 [115 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpg-error0 riscv64 1.47-3build1 [75.7 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcrypt20 riscv64 1.10.3-2 [564 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma5 riscv64 5.6.1+really5.4.5-1 [130 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2 [349 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkmod2 riscv64 31+20240202-2ubuntu5 [55.0 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-8-0 riscv64 10.42-4ubuntu1 [149 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libselinux1 riscv64 3.5-2ubuntu2 [86.1 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmount1 riscv64 2.39.3-9ubuntu4 [212 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtext-iconv-perl riscv64 1.7-8build3 [13.5 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main riscv64 libtext-charwidth-perl riscv64 0.04-11build3 [9272 B] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 perl-modules-5.38 all 5.38.2-3.2build1 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-6build1 [779 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgdbm6t64 riscv64 1.23-5.1build1 [35.9 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgdbm-compat4t64 riscv64 1.23-5.1build1 [6884 B] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libperl5.38t64 riscv64 5.38.2-3.2build1 [4467 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 perl riscv64 5.38.2-3.2build1 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 perl-base riscv64 5.38.2-3.2build1 [1833 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblocale-gettext-perl riscv64 1.07-6ubuntu5 [15.7 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 openssl riscv64 3.0.13-0ubuntu3 [992 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd-shared riscv64 255.4-1ubuntu6 [2180 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcryptsetup12 riscv64 2:2.7.0-1ubuntu3 [274 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssl3t64 riscv64 3.0.13-0ubuntu3 [1735 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-dev all 255.4-1ubuntu6 [104 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd-sysv riscv64 255.4-1ubuntu6 [11.9 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 systemd riscv64 255.4-1ubuntu6 [3552 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsystemd0 riscv64 255.4-1ubuntu6 [458 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-modules-bin riscv64 1.5.3-5ubuntu4 [55.1 kB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-modules riscv64 1.5.3-5ubuntu4 [284 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnettle8t64 riscv64 3.9.1-2.2build1 [217 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libhogweed6t64 riscv64 3.9.1-2.2build1 [200 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libp11-kit0 riscv64 0.25.3-4ubuntu1 [318 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 libunistring5 riscv64 1.1-2 [544 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgnutls30t64 riscv64 3.8.3-1.1ubuntu3 [1012 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libapt-pkg6.0t64 riscv64 2.7.14build2 [1050 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bzip2 riscv64 1.0.8-5.1 [35.0 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbz2-1.0 riscv64 1.0.8-5.1 [40.2 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-14-base riscv64 14-20240315-1ubuntu1 [47.0 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-s1 riscv64 14-20240315-1ubuntu1 [61.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++6 riscv64 14-20240315-1ubuntu1 [807 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libudev1 riscv64 255.4-1ubuntu6 [181 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main riscv64 libxxhash0 riscv64 0.8.2-2 [43.7 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 zlib1g riscv64 1:1.3.dfsg-3.1ubuntu2 [60.8 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main riscv64 libffi8 riscv64 3.4.6-1 [23.0 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 libidn2-0 riscv64 2.3.7-2 [102 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdebconfclient0 riscv64 0.271ubuntu3 [11.2 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main riscv64 base-passwd riscv64 3.6.3 [52.1 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsqlite3-0 riscv64 3.45.1-1ubuntu2 [739 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpg riscv64 2.4.4-2ubuntu16 [607 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libreadline8t64 riscv64 8.2-4build1 [156 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 readline-common all 8.2-4build1 [56.5 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main riscv64 libncursesw6 riscv64 6.4+20240113-1ubuntu1 [155 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 libtinfo6 riscv64 6.4+20240113-1ubuntu1 [108 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpg-agent riscv64 2.4.4-2ubuntu16 [282 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpgconf riscv64 2.4.4-2ubuntu16 [133 kB] Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 pinentry-curses riscv64 1.2.1-3ubuntu5 [40.6 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main riscv64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnpth0t64 riscv64 1.6-3.1build1 [8144 B] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gpgv riscv64 2.4.4-2ubuntu16 [276 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt-utils riscv64 2.7.14build2 [226 kB] Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 apt riscv64 2.7.14build2 [1349 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 debconf-i18n all 1.5.86 [205 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 debconf all 1.5.86 [124 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam0g riscv64 1.5.3-5ubuntu4 [69.0 kB] Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libseccomp2 riscv64 2.5.5-1ubuntu3 [52.9 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-4 [23.7 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdevmapper1.02.1 riscv64 2:1.02.185-3ubuntu3 [145 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libuuid1 riscv64 2.39.3-9ubuntu4 [37.6 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfdisk1 riscv64 2.39.3-9ubuntu4 [238 kB] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 mount riscv64 2.39.3-9ubuntu4 [152 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcom-err2 riscv64 1.47.0-2.4~exp1ubuntu3 [22.5 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 libkeyutils1 riscv64 1.6.3-3 [9694 B] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnsl2 riscv64 1.3.0-3build3 [43.3 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main riscv64 linux-libc-dev riscv64 6.8.0-20.20 [1567 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc6 riscv64 2.39-0ubuntu8 [2776 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libc-bin riscv64 2.39-0ubuntu8 [609 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 base-files riscv64 13ubuntu9 [73.6 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debianutils riscv64 5.17build1 [89.8 kB] Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bash riscv64 5.2.21-2ubuntu4 [745 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bsdutils riscv64 1:2.39.3-9ubuntu4 [115 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 coreutils riscv64 9.4-3ubuntu5 [1458 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 tar riscv64 1.35+dfsg-3 [269 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg riscv64 1.22.6ubuntu6 [1285 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main riscv64 dash riscv64 0.5.12-6ubuntu5 [93.2 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main riscv64 diffutils riscv64 1:3.10-1 [180 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main riscv64 grep riscv64 3.11-4 [182 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main riscv64 gzip riscv64 1.12-1ubuntu2 [102 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main riscv64 hostname riscv64 3.23+nmu2ubuntu1 [11.3 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main riscv64 login riscv64 1:4.13+dfsg1-4ubuntu1 [203 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main riscv64 ncurses-bin riscv64 6.4+20240113-1ubuntu1 [186 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main riscv64 sed riscv64 4.9-2 [211 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 util-linux riscv64 2.39.3-9ubuntu4 [1330 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main riscv64 ncurses-base all 6.4+20240113-1ubuntu1 [25.4 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main riscv64 sysvinit-utils riscv64 3.08-6ubuntu2 [35.0 kB] Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 logsave riscv64 1.47.0-2.4~exp1ubuntu3 [22.2 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libext2fs2t64 riscv64 1.47.0-2.4~exp1ubuntu3 [243 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 e2fsprogs riscv64 1.47.0-2.4~exp1ubuntu3 [604 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 optipng riscv64 0.7.8+ds-1build2 [115 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpng16-16t64 riscv64 1.6.43-5build1 [193 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main riscv64 init riscv64 1.66ubuntu1 [6190 B] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsmartcols1 riscv64 2.39.3-9ubuntu4 [146 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 uuid-runtime riscv64 2.39.3-9ubuntu4 [49.2 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main riscv64 libattr1 riscv64 1:2.5.2-1 [11.5 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main riscv64 libmd0 riscv64 1.1.0-2 [30.6 kB] Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-runtime all 1.5.3-5ubuntu4 [40.8 kB] Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main riscv64 libsepol2 riscv64 3.5-2 [312 kB] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsemanage2 riscv64 3.5-1build5 [101 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main riscv64 passwd riscv64 1:4.13+dfsg1-4ubuntu1 [864 kB] Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libproc2-0 riscv64 2:4.0.4-4ubuntu3 [60.9 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libss2 riscv64 1.47.0-2.4~exp1ubuntu3 [17.1 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main riscv64 mawk riscv64 1.3.4.20240123-1 [129 kB] Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 procps riscv64 2:4.0.4-4ubuntu3 [715 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main riscv64 sensible-utils all 0.0.22 [22.5 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main riscv64 ca-certificates all 20240203 [159 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main riscv64 tzdata all 2024a-1ubuntu1 [273 kB] Get:139 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bsdextrautils riscv64 2.39.3-9ubuntu4 [92.1 kB] Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgpm2 riscv64 1.20.7-11 [15.0 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main riscv64 libip4tc2 riscv64 1.8.10-3ubuntu1 [23.9 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libjansson4 riscv64 2.14-2build2 [34.7 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 psmisc riscv64 23.7-1build1 [177 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main riscv64 xz-utils riscv64 5.6.1+really5.4.5-1 [269 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf0 riscv64 2.42-4ubuntu2 [104 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf-nobfd0 riscv64 2.42-4ubuntu2 [106 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-riscv64-linux-gnu riscv64 2.42-4ubuntu2 [899 kB] Get:149 http://ftpmaster.internal/ubuntu noble/main riscv64 libbinutils riscv64 2.42-4ubuntu2 [566 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils riscv64 2.42-4ubuntu2 [2984 B] Get:151 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-common riscv64 2.42-4ubuntu2 [209 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main riscv64 libsframe1 riscv64 2.42-4ubuntu2 [15.7 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main riscv64 libgomp1 riscv64 14-20240315-1ubuntu1 [145 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main riscv64 libatomic1 riscv64 14-20240315-1ubuntu1 [9496 B] Get:155 http://ftpmaster.internal/ubuntu noble/main riscv64 libasan8 riscv64 14-20240315-1ubuntu1 [2621 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main riscv64 libubsan1 riscv64 14-20240315-1ubuntu1 [1075 kB] Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 g++-13 riscv64 13.2.0-23ubuntu3 [14.5 kB] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gcc-13 riscv64 13.2.0-23ubuntu3 [450 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libstdc++-13-dev riscv64 13.2.0-23ubuntu3 [5666 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgcc-13-dev riscv64 13.2.0-23ubuntu3 [3858 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main riscv64 libcc1-0 riscv64 14-20240315-1ubuntu1 [45.2 kB] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 cpp-13 riscv64 13.2.0-23ubuntu3 [1030 B] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gcc-13-base riscv64 13.2.0-23ubuntu3 [48.7 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gcc-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [19.7 MB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 g++-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [11.6 MB] Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 cpp-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [10.3 MB] Get:167 http://ftpmaster.internal/ubuntu noble/main riscv64 g++ riscv64 4:13.2.0-7ubuntu1 [1082 B] Get:168 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc riscv64 4:13.2.0-7ubuntu1 [5016 B] Get:169 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp riscv64 4:13.2.0-7ubuntu1 [22.4 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [5316 B] Get:171 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [1202 B] Get:172 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [960 B] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main riscv64 lto-disabled-list all 47 [12.4 kB] Get:176 http://ftpmaster.internal/ubuntu noble/main riscv64 libfakeroot riscv64 1.33-1 [34.6 kB] Get:177 http://ftpmaster.internal/ubuntu noble/main riscv64 fakeroot riscv64 1.33-1 [78.4 kB] Preconfiguring packages ... Fetched 113 MB in 18s (6198 kB/s) (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3build3_riscv64.deb ... Unpacking libnsl-dev:riscv64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.36-4_riscv64.deb ... Unpacking libcrypt-dev:riscv64 (1:4.4.36-4) over (1:4.4.36-2) ... Preparing to unpack .../2-libc6-dev_2.39-0ubuntu8_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../3-libc-dev-bin_2.39-0ubuntu8_riscv64.deb ... Unpacking libc-dev-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../4-libtirpc-common_1.3.4+ds-1.1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../5-libtirpc-dev_1.3.4+ds-1.1build1_riscv64.deb ... Unpacking libtirpc-dev:riscv64 (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... 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Unpacking libdb5.3t64:riscv64 (5.3.28+dfsg2-6build1) ... dpkg: libgdbm6:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libgdbm6 (>= 1.21). libgdbm-compat4:riscv64 depends on libgdbm6 (>= 1.16). (Reading database ... 14975 files and directories currently installed.) Removing libgdbm6:riscv64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:riscv64. (Reading database ... 14970 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-5.1build1_riscv64.deb ... Unpacking libgdbm6t64:riscv64 (1.23-5.1build1) ... dpkg: libgdbm-compat4:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 14976 files and directories currently installed.) Removing libgdbm-compat4:riscv64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:riscv64. (Reading database ... 14971 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1build1_riscv64.deb ... Unpacking libgdbm-compat4t64:riscv64 (1.23-5.1build1) ... Selecting previously unselected package libperl5.38t64:riscv64. Preparing to unpack .../libperl5.38t64_5.38.2-3.2build1_riscv64.deb ... Unpacking libperl5.38t64:riscv64 (5.38.2-3.2build1) ... Preparing to unpack .../perl-base_5.38.2-3.2build1_riscv64.deb ... Unpacking perl-base (5.38.2-3.2build1) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.38.2-3.2build1) ... (Reading database ... 15497 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu5_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-6ubuntu5) over (1.07-6) ... Preparing to unpack .../openssl_3.0.13-0ubuntu3_riscv64.deb ... Unpacking openssl (3.0.13-0ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../libsystemd-shared_255.4-1ubuntu6_riscv64.deb ... 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Unpacking systemd (255.4-1ubuntu6) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu6_riscv64.deb ... 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(both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_riscv64.deb ... Unpacking libbz2-1.0:riscv64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:riscv64 (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:riscv64. (Reading database ... 15664 files and directories currently installed.) 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Selecting previously unselected package libext2fs2t64:riscv64. (Reading database ... 15664 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu3_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libe2p.so.2 to /lib/riscv64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libe2p.so.2.3 to /lib/riscv64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libext2fs.so.2 to /lib/riscv64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libext2fs.so.2.4 to /lib/riscv64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:riscv64 (1.47.0-2.4~exp1ubuntu3) ... Setting up libcom-err2:riscv64 (1.47.0-2.4~exp1ubuntu3) ... Setting up libext2fs2t64:riscv64 (1.47.0-2.4~exp1ubuntu3) ... (Reading database ... 15680 files and directories currently installed.) 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Setting up libcryptsetup12:riscv64 (2:2.7.0-1ubuntu3) ... Setting up libfdisk1:riscv64 (2.39.3-9ubuntu4) ... Setting up libkmod2:riscv64 (31+20240202-2ubuntu5) ... Setting up libseccomp2:riscv64 (2.5.5-1ubuntu3) ... Setting up libsystemd-shared:riscv64 (255.4-1ubuntu6) ... Setting up systemd-dev (255.4-1ubuntu6) ... Setting up mount (2.39.3-9ubuntu4) ... Setting up systemd (255.4-1ubuntu6) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255.4-1ubuntu6) ... (Reading database ... 15679 files and directories currently installed.) Preparing to unpack .../init_1.66ubuntu1_riscv64.deb ... Unpacking init (1.66ubuntu1) over (1.65.2ubuntu1) ... Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu4_riscv64.deb ... Unpacking libsmartcols1:riscv64 (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... Setting up libsmartcols1:riscv64 (2.39.3-9ubuntu4) ... (Reading database ... 15680 files and directories currently installed.) Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu4_riscv64.deb ... Unpacking uuid-runtime (2.39.3-9ubuntu4) over (2.39.1-4ubuntu2) ... dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libattr1_1%3a2.5.2-1_riscv64.deb ... Unpacking libattr1:riscv64 (1:2.5.2-1) over (1:2.5.1-4) ... Setting up libattr1:riscv64 (1:2.5.2-1) ... (Reading database ... 15678 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2_riscv64.deb ... Unpacking libmd0:riscv64 (1.1.0-2) over (1.1.0-1) ... Setting up libmd0:riscv64 (1.1.0-2) ... (Reading database ... 15678 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu4_all.deb ... Unpacking libpam-runtime (1.5.3-5ubuntu4) over (1.5.2-6ubuntu1) ... Setting up libpam-runtime (1.5.3-5ubuntu4) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1build5_all.deb ... Unpacking libsemanage-common (3.5-1build5) over (3.5-1) ... Setting up libsemanage-common (3.5-1build5) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2_riscv64.deb ... Unpacking libsepol2:riscv64 (3.5-2) over (3.5-1) ... Setting up libsepol2:riscv64 (3.5-2) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1build5_riscv64.deb ... Unpacking libsemanage2:riscv64 (3.5-1build5) over (3.5-1) ... Setting up libsemanage2:riscv64 (3.5-1build5) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4ubuntu1_riscv64.deb ... Unpacking passwd (1:4.13+dfsg1-4ubuntu1) over (1:4.13+dfsg1-1ubuntu1) ... Setting up passwd (1:4.13+dfsg1-4ubuntu1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4ubuntu3_riscv64.deb ... Unpacking libproc2-0:riscv64 (2:4.0.4-4ubuntu3) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu3_riscv64.deb ... Unpacking libss2:riscv64 (1.47.0-2.4~exp1ubuntu3) over (1.47.0-2ubuntu1) ... Preparing to unpack .../02-mawk_1.3.4.20240123-1_riscv64.deb ... 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Setting up libgpm2:riscv64 (1.20.7-11) ... Setting up libgdbm6t64:riscv64 (1.23-5.1build1) ... Setting up bsdextrautils (2.39.3-9ubuntu4) ... Setting up init (1.66ubuntu1) ... Setting up libgdbm-compat4t64:riscv64 (1.23-5.1build1) ... Setting up psmisc (23.7-1build1) ... Setting up libtirpc-common (1.3.4+ds-1.1build1) ... Setting up libsqlite3-0:riscv64 (3.45.1-1ubuntu2) ... Setting up binutils-common:riscv64 (2.42-4ubuntu2) ... Setting up linux-libc-dev:riscv64 (6.8.0-20.20) ... Setting up libctf-nobfd0:riscv64 (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:riscv64 (14-20240315-1ubuntu1) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:riscv64 (2.42-4ubuntu2) ... Setting up libfakeroot:riscv64 (1.33-1) ... Setting up libjansson4:riscv64 (2.14-2build2) ... Setting up libkrb5support0:riscv64 (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 2 19:14:55 UTC 2024. Universal Time is now: Tue Apr 2 19:14:55 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1) ... Setting up gcc-13-base:riscv64 (13.2.0-23ubuntu3) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build1) ... Setting up libproc2-0:riscv64 (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:riscv64 (1.6.43-5build1) ... Setting up libatomic1:riscv64 (14-20240315-1ubuntu1) ... Setting up libss2:riscv64 (1.47.0-2.4~exp1ubuntu3) ... Setting up libncursesw6:riscv64 (6.4+20240113-1ubuntu1) ... Setting up libk5crypto3:riscv64 (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu3) ... Setting up libdb5.3t64:riscv64 (5.3.28+dfsg2-6build1) ... Setting up libubsan1:riscv64 (14-20240315-1ubuntu1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu4) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:riscv64 (1:4.4.36-4) ... Setting up libasan8:riscv64 (14-20240315-1ubuntu1) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1) ... Setting up libkrb5-3:riscv64 (1.20.1-6ubuntu2) ... Setting up libperl5.38t64:riscv64 (5.38.2-3.2build1) ... Setting up libbinutils:riscv64 (2.42-4ubuntu2) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build1) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:riscv64 (14-20240315-1ubuntu1) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libctf0:riscv64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up binutils-riscv64-linux-gnu (2.42-4ubuntu2) ... Setting up debconf-i18n (1.5.86) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu3) ... Setting up binutils (2.42-4ubuntu2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build1) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up libgssapi-krb5-2:riscv64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:riscv64 (8.2-4build1) ... Setting up libgcc-13-dev:riscv64 (13.2.0-23ubuntu3) ... Setting up gpgconf (2.4.4-2ubuntu16) ... Setting up libc6-dev:riscv64 (2.39-0ubuntu8) ... Setting up cpp-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up gpg (2.4.4-2ubuntu16) ... Setting up libstdc++-13-dev:riscv64 (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu16) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:riscv64 (1.3.4+ds-1.1build1) ... Setting up gcc-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up gcc-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libtirpc-dev:riscv64 (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:riscv64 (1.3.0-3build3) ... Setting up g++-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up libnss-nisplus:riscv64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up g++-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:riscv64 (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15732 files and directories currently installed.) Purging configuration files for libssl3:riscv64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27987400 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-27987400 --arch=riscv64 --dist=noble-proposed --nolog 'cctbx_2023.12+ds2+~3.17.0+ds1-4build2.dsc' Initiating build PACKAGEBUILD-27987400 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 sbuild (Debian sbuild) 0.81.2ubuntu6 (16 February 2022) on bos03-riscv64-063.buildd +=================================================================================+ | cctbx 2023.12+ds2+~3.17.0+ds1-4build2 (riscv64) Tue, 02 Apr 2024 19:18:04 +0000 | +=================================================================================+ Package: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build2 Source Version: 2023.12+ds2+~3.17.0+ds1-4build2 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27987400/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/cctbx-s0Htd2/resolver-xPaGrg' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- cctbx_2023.12+ds2+~3.17.0+ds1-4build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/cctbx-s0Htd2/cctbx-2023.12+ds2+~3.17.0+ds1' with '<>' I: NOTICE: Log filtering will replace 'build/cctbx-s0Htd2' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-h5py (>= 3), python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-nxmx, python3-orderedset, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, rsync, scons, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-h5py (>= 3), python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-nxmx, python3-orderedset, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, rsync, scons, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [683 B] Get:5 copy:/<>/apt_archive ./ Packages [762 B] Fetched 2408 B in 0s (5917 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev blt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 gettext gettext-base groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian jq libaec-dev libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcbf-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclipper-dev libclipper2 libcolord2 libcups2t64 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1t64 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libepoxy0 libevdev2 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0t64 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu74 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc-dev liblerc4 libllvm17t64 liblz4-dev liblzf1 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmmdb2-0 libmmdb2-dev libmtdev1t64 libmunge2 libnetcdf19t64 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnotify4 libonig5 libopengl-dev libopengl0 libopenjp2-7 libopenmpi3t64 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpipeline1 libpixman-1-0 libpkgconf3 libpmix2t64 libpopt0 libpsl5t64 libpthread-stubs0-dev libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libraqm0 librdmacm1t64 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv-dev libsharpyuv0 libsm6 libssh-4 libssl-dev libssm-dev libssm2 libsub-override-perl libsz2 libtcl8.6 libthai-data libthai0 libtiff-dev libtiff6 libtiffxx6 libtk8.6 libtool libuchardet0 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzstd-dev m4 man-db media-types netbase ocl-icd-libopencl1 pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev pymol-data python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-fonttools python3-freetype python3-fs python3-h5py python3-h5py-serial python3-idna python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-mrcfile python3-msgpack python3-numpy python3-nxmx python3-opengl python3-orderedset python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pip python3-pkg-resources python3-pluggy python3-procrunner python3-psutil python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-pytest python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3-wheel python3-wxgtk4.0 python3.12 python3.12-dev python3.12-minimal rsync scons sfftw-dev sfftw2 sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data w3c-sgml-lib x11-common x11proto-dev xfonts-encodings xfonts-utils xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo dh-make flit python3-build python3-installer mpi-defaults-bin fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.83-doc gccxml libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-program-options1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libclipper-doc colord cups-common libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libfftw3-doc glew-utils low-memory-monitor gvfs libhdf5-doc libjs-jquery-ui-docs liblcms2-utils liblzma-doc notification-daemon pciutils qgnomeplatform-qt5 qt5-image-formats-plugins lm-sensors libssl-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk libwacom-bin libx11-doc libxcb-doc m4-doc apparmor less www-browser opencl-icd libmail-box-perl pybind11-doc python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python-cycler-doc python-h5py-doc python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran libgle3 python-pil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg wx3.2-doc python3.12-venv python3.12-doc binfmt-support openssh-client openssh-server python3-braceexpand scons-doc sgml-base-doc Recommended packages: librsvg2-common curl | wget | lynx at-spi2-core libarchive-cpio-perl libgdk-pixbuf2.0-bin libgl1-amber-dri libglib2.0-data xdg-user-dirs libgtk-3-bin javascript-common libldap-common publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-bs4 python3-cssselect python3-html5lib libglut-dev python3-olefile python3-pygments fonts-dejavu-extra isympy-common The following NEW packages will be installed: adwaita-icon-theme at-spi2-common autoconf automake autopoint autotools-dev blt dbus dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common dbus-user-session dconf-gsettings-backend dconf-service debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx fonts-urw-base35 gettext gettext-base groff-base gtk-update-icon-cache hdf5-helpers hicolor-icon-theme humanity-icon-theme ibverbs-providers intltool-debian jq libaec-dev libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev libboost-numpy-dev libboost-numpy1.83-dev libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 libboost-serialization1.83-dev libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 libboost1.83-dev libbrotli1 libbsd0 libcairo-gobject2 libcairo2 libcbf-dev libcbf1t64 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclipper-dev libclipper2 libcolord2 libcups2t64 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 libdatrie1 libdbus-1-3 libdconf1 libdebhelper-perl libdeflate-dev libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1t64 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1t64 libepoxy0 libevdev2 libevent-core-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgbm1 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglib2.0-0t64 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgtk-3-0t64 libgtk-3-common libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwloc-plugins libhwloc15 libibverbs1 libice6 libicu74 libimagequant0 libinput-bin libinput10 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap2 liblerc-dev liblerc4 libllvm17t64 liblz4-dev liblzf1 liblzma-dev libmagic-mgc libmagic1t64 libmd4c0 libmmdb2-0 libmmdb2-dev libmtdev1t64 libmunge2 libnetcdf19t64 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnotify4 libonig5 libopengl-dev libopengl0 libopenjp2-7 libopenmpi3t64 libpam-systemd libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpipeline1 libpixman-1-0 libpkgconf3 libpmix2t64 libpopt0 libpsl5t64 libpthread-stubs0-dev libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libraqm0 librdmacm1t64 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsharpyuv-dev libsharpyuv0 libsm6 libssh-4 libssl-dev libssm-dev libssm2 libsub-override-perl libsz2 libtcl8.6 libthai-data libthai0 libtiff-dev libtiff6 libtiffxx6 libtk8.6 libtool libuchardet0 libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp-dev libwebp7 libwebpdecoder3 libwebpdemux2 libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1 libxdmcp-dev libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzstd-dev m4 man-db media-types netbase ocl-icd-libopencl1 pkg-config pkgconf pkgconf-bin po-debconf pybind11-dev pymol-data python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cairo python3-certifi python3-chardet python3-contourpy python3-cycler python3-dateutil python3-decorator python3-dev python3-fonttools python3-freetype python3-fs python3-h5py python3-h5py-serial python3-idna python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-mrcfile python3-msgpack python3-numpy python3-nxmx python3-opengl python3-orderedset python3-packaging python3-pil python3-pil.imagetk python3-pint python3-pip python3-pkg-resources python3-pluggy python3-procrunner python3-psutil python3-pycbf python3-pymol python3-pyparsing python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip python3-pytest python3-reportlab python3-requests python3-rlpycairo python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tqdm python3-tz python3-ufolib2 python3-urllib3 python3-wheel python3-wxgtk4.0 python3.12 python3.12-dev python3.12-minimal rsync sbuild-build-depends-main-dummy scons sfftw-dev sfftw2 sgml-base shared-mime-info sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data w3c-sgml-lib x11-common x11proto-dev xfonts-encodings xfonts-utils xkb-data xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 427 newly installed, 0 to remove and 0 not upgraded. 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noble-proposed/main riscv64 libpython3-stdlib riscv64 3.12.2-0ubuntu2 [9856 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3 riscv64 3.12.2-0ubuntu2 [24.1 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 libpopt0 riscv64 1.19+dfsg-1 [25.0 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 rsync riscv64 3.2.7-1build2 [444 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-lato all 2.015-1 [2781 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 sgml-base all 1.31 [11.4 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdbus-1-3 riscv64 1.14.10-4ubuntu3 [224 kB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dbus-bin riscv64 1.14.10-4ubuntu3 [38.7 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dbus-session-bus-common all 1.14.10-4ubuntu3 [80.4 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dbus-daemon 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noble-proposed/main riscv64 adwaita-icon-theme all 46.0-1 [723 kB] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 at-spi2-common all 2.52.0-1 [8586 B] Get:68 http://ftpmaster.internal/ubuntu noble/main riscv64 m4 riscv64 1.4.19-4 [261 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main riscv64 autoconf all 2.71-3 [339 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main riscv64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main riscv64 autopoint all 0.21-14ubuntu1 [422 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtcl8.6 riscv64 8.6.14+dfsg-1build1 [1072 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbrotli1 riscv64 1.1.0-2build2 [389 kB] Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfreetype6 riscv64 2.13.2+dfsg-1build3 [430 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-dejavu-core all 2.37-8 [835 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main riscv64 libfontenc1 riscv64 1:1.1.8-1build1 [14.2 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main riscv64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 xfonts-utils riscv64 1:7.7+6build2 [92.1 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main riscv64 fonts-urw-base35 all 20200910-8 [11.0 MB] Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 fontconfig-config riscv64 2.15.0-1.1ubuntu2 [37.4 kB] Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfontconfig1 riscv64 2.15.0-1.1ubuntu2 [145 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main riscv64 libxrender1 riscv64 1:0.9.10-1.1 [17.5 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main riscv64 libxft2 riscv64 2.3.6-1 [39.0 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main riscv64 libxss1 riscv64 1:1.2.3-1build2 [7676 B] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtk8.6 riscv64 8.6.14-1build1 [802 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main riscv64 tk8.6-blt2.5 riscv64 2.5.3+dfsg-7 [645 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main riscv64 blt riscv64 2.5.3+dfsg-7 [4830 B] Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdconf1 riscv64 0.40.0-4build2 [44.3 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dconf-service riscv64 0.40.0-4build2 [33.7 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dconf-gsettings-backend riscv64 0.40.0-4build2 [29.0 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main riscv64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 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http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libatk1.0-0t64 riscv64 2.52.0-1 [57.0 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main riscv64 libxi6 riscv64 2:1.8.1-1 [34.8 kB] Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libatspi2.0-0t64 riscv64 2.52.0-1 [83.1 kB] Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libatk-bridge2.0-0t64 riscv64 2.52.0-1 [68.7 kB] Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libavahi-common-data riscv64 0.8-13ubuntu5 [29.6 kB] Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libavahi-common3 riscv64 0.8-13ubuntu5 [24.4 kB] Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libavahi-client3 riscv64 0.8-13ubuntu5 [27.9 kB] Get:147 http://ftpmaster.internal/ubuntu noble/main riscv64 libblas3 riscv64 3.12.0-3 [132 kB] Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost1.83-dev riscv64 1.83.0-2.1ubuntu2 [10.7 MB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-atomic1.83.0 riscv64 1.83.0-2.1ubuntu2 [239 kB] Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-atomic1.83-dev riscv64 1.83.0-2.1ubuntu2 [242 kB] Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-chrono1.83.0t64 riscv64 1.83.0-2.1ubuntu2 [246 kB] Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-chrono1.83-dev riscv64 1.83.0-2.1ubuntu2 [296 kB] Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-date-time1.83.0 riscv64 1.83.0-2.1ubuntu2 [236 kB] Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-serialization1.83.0 riscv64 1.83.0-2.1ubuntu2 [351 kB] Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-serialization1.83-dev riscv64 1.83.0-2.1ubuntu2 [893 kB] Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-date-time1.83-dev riscv64 1.83.0-2.1ubuntu2 [239 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main riscv64 libboost-dev riscv64 1.83.0.1ubuntu2 [4312 B] Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-python1.83.0 riscv64 1.83.0-2.1ubuntu2 [316 kB] Get:159 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-numpy1.83.0 riscv64 1.83.0-2.1ubuntu2 [242 kB] Get:160 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-numpy1.83-dev riscv64 1.83.0-2.1ubuntu2 [309 kB] Get:161 http://ftpmaster.internal/ubuntu noble/universe riscv64 libboost-numpy-dev riscv64 1.83.0.1ubuntu2 [4100 B] Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3.12t64 riscv64 3.12.2-5ubuntu2 [2405 kB] Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libexpat1-dev riscv64 2.6.1-2build1 [317 kB] Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg-3.1ubuntu2 [968 kB] Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3.12-dev riscv64 3.12.2-5ubuntu2 [17.2 MB] Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3-dev riscv64 3.12.2-0ubuntu2 [10.1 kB] Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3.12-dev riscv64 3.12.2-5ubuntu2 [498 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main riscv64 libjs-sphinxdoc all 7.2.6-6 [149 kB] Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-dev riscv64 3.12.2-0ubuntu2 [26.7 kB] Get:172 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libboost-python1.83-dev riscv64 1.83.0-2.1ubuntu2 [756 kB] Get:173 http://ftpmaster.internal/ubuntu noble/universe riscv64 libboost-python-dev riscv64 1.83.0.1ubuntu2 [4346 B] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-system1.83.0 riscv64 1.83.0-2.1ubuntu2 [236 kB] Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-system1.83-dev riscv64 1.83.0-2.1ubuntu2 [231 kB] Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-thread1.83.0 riscv64 1.83.0-2.1ubuntu2 [277 kB] Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libboost-thread1.83-dev riscv64 1.83.0-2.1ubuntu2 [419 kB] Get:178 http://ftpmaster.internal/ubuntu noble/main riscv64 libboost-thread-dev riscv64 1.83.0.1ubuntu2 [4088 B] Get:179 http://ftpmaster.internal/ubuntu noble/main riscv64 libpixman-1-0 riscv64 0.42.2-1 [165 kB] Get:180 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-render0 riscv64 1.15-1 [13.8 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-shm0 riscv64 1.15-1 [5326 B] Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcairo2 riscv64 1.18.0-3 [613 kB] Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcairo-gobject2 riscv64 1.18.0-3 [126 kB] Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-5ubuntu2 [22.1 kB] Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-5ubuntu2 [62.3 kB] Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libldap2 riscv64 2.6.7+dfsg-1~exp1ubuntu7 [207 kB] Get:187 http://ftpmaster.internal/ubuntu noble/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build7 [58.8 kB] Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssh-4 riscv64 0.10.6-2build2 [202 kB] Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl4t64 riscv64 8.5.0-2ubuntu9 [355 kB] Get:190 http://ftpmaster.internal/ubuntu noble/universe riscv64 libsz2 riscv64 1.1.2-1 [5068 B] Get:191 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhdf5-103-1t64 riscv64 1.10.10+repack-3.1ubuntu4 [1406 kB] Get:192 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libcbf1t64 riscv64 0.9.7+dfsg1-3.1build2 [373 kB] Get:193 http://ftpmaster.internal/ubuntu noble/universe riscv64 libccp4-data all 8.0.0-2 [65.1 kB] Get:194 http://ftpmaster.internal/ubuntu noble/universe riscv64 libccp4c0 riscv64 8.0.0-2 [87.1 kB] Get:195 http://ftpmaster.internal/ubuntu noble/main riscv64 libgfortran5 riscv64 14-20240315-1ubuntu1 [469 kB] Get:196 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmmdb2-0 riscv64 2.0.22-1 [354 kB] Get:197 http://ftpmaster.internal/ubuntu noble/universe riscv64 libccp4f0 riscv64 8.0.0-2 [215 kB] Get:198 http://ftpmaster.internal/ubuntu noble/universe riscv64 libccp4-dev riscv64 8.0.0-2 [42.3 kB] Get:199 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 sfftw2 riscv64 2.1.5-6build2 [187 kB] Get:200 http://ftpmaster.internal/ubuntu noble/universe riscv64 libclipper2 riscv64 2.1.20201109-2 [1211 kB] Get:201 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmmdb2-dev riscv64 2.0.22-1 [93.5 kB] Get:202 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 sfftw-dev riscv64 2.1.5-6build2 [290 kB] Get:203 http://ftpmaster.internal/ubuntu noble/universe riscv64 libclipper-dev riscv64 2.1.20201109-2 [77.0 kB] Get:204 http://ftpmaster.internal/ubuntu noble/main riscv64 liblcms2-2 riscv64 2.14-2 [145 kB] Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcolord2 riscv64 1.4.7-1build2 [152 kB] Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcups2t64 riscv64 2.4.7-1.2ubuntu3 [286 kB] Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl3t64-gnutls riscv64 8.5.0-2ubuntu9 [347 kB] Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl4-openssl-dev riscv64 8.5.0-2ubuntu9 [1116 kB] Get:209 http://ftpmaster.internal/ubuntu noble/main riscv64 libdatrie1 riscv64 0.2.13-3 [22.9 kB] Get:210 http://ftpmaster.internal/ubuntu noble/main riscv64 libdeflate-dev riscv64 1.19-1 [90.4 kB] Get:211 http://ftpmaster.internal/ubuntu noble/universe riscv64 libdouble-conversion3 riscv64 3.3.0-1 [39.2 kB] Get:212 http://ftpmaster.internal/ubuntu noble/main riscv64 libdrm-amdgpu1 riscv64 2.4.120-2 [21.3 kB] Get:213 http://ftpmaster.internal/ubuntu noble/main riscv64 libdrm-nouveau2 riscv64 2.4.120-2 [18.2 kB] Get:214 http://ftpmaster.internal/ubuntu noble/main riscv64 libdrm-radeon1 riscv64 2.4.120-2 [23.1 kB] Get:215 http://ftpmaster.internal/ubuntu noble/main riscv64 libwayland-server0 riscv64 1.22.0-2.1 [35.5 kB] Get:216 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-randr0 riscv64 1.15-1 [15.0 kB] Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgbm1 riscv64 24.0.3-1ubuntu4 [45.7 kB] Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libglapi-mesa riscv64 24.0.3-1ubuntu4 [60.0 kB] Get:219 http://ftpmaster.internal/ubuntu noble/main riscv64 libwayland-client0 riscv64 1.22.0-2.1 [27.6 kB] Get:220 http://ftpmaster.internal/ubuntu noble/main riscv64 libx11-xcb1 riscv64 2:1.8.7-1 [7618 B] Get:221 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-dri2-0 riscv64 1.15-1 [6400 B] Get:222 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-dri3-0 riscv64 1.15-1 [6270 B] Get:223 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-present0 riscv64 1.15-1 [5224 B] Get:224 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-sync1 riscv64 1.15-1 [8022 B] Get:225 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-xfixes0 riscv64 1.15-1 [8928 B] Get:226 http://ftpmaster.internal/ubuntu noble/main riscv64 libxshmfence1 riscv64 1.3-1build4 [4976 B] Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libegl-mesa0 riscv64 24.0.3-1ubuntu4 [122 kB] Get:228 http://ftpmaster.internal/ubuntu noble/main riscv64 libepoxy0 riscv64 1.5.10-1 [193 kB] Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfftw3-double3 riscv64 3.3.10-1ubuntu3 [416 kB] Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfftw3-long3 riscv64 3.3.10-1ubuntu3 [781 kB] Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfftw3-single3 riscv64 3.3.10-1ubuntu3 [421 kB] Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfftw3-bin riscv64 3.3.10-1ubuntu3 [32.4 kB] Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfftw3-dev riscv64 3.3.10-1ubuntu3 [1726 kB] Get:234 http://ftpmaster.internal/ubuntu noble/main riscv64 libglvnd0 riscv64 1.7.0-1 [94.2 kB] Get:235 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-glx0 riscv64 1.15-1 [20.5 kB] Get:236 http://ftpmaster.internal/ubuntu noble/main riscv64 libxfixes3 riscv64 1:6.0.0-2 [9620 B] Get:237 http://ftpmaster.internal/ubuntu noble/main riscv64 libxxf86vm1 riscv64 1:1.1.4-1build3 [9744 B] Get:238 http://ftpmaster.internal/ubuntu noble/main riscv64 libvulkan1 riscv64 1.3.275.0-1 [153 kB] Get:239 http://ftpmaster.internal/ubuntu noble/main riscv64 libllvm17t64 riscv64 1:17.0.6-9build2 [25.6 MB] Get:240 http://ftpmaster.internal/ubuntu noble/main riscv64 libsensors-config all 1:3.6.0-9build1 [5546 B] Get:241 http://ftpmaster.internal/ubuntu noble/main riscv64 libsensors5 riscv64 1:3.6.0-9build1 [28.1 kB] Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgl1-mesa-dri riscv64 24.0.3-1ubuntu4 [6751 kB] Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libglx-mesa0 riscv64 24.0.3-1ubuntu4 [187 kB] Get:244 http://ftpmaster.internal/ubuntu noble/main riscv64 libglx0 riscv64 1.7.0-1 [31.2 kB] Get:245 http://ftpmaster.internal/ubuntu noble/main riscv64 libgl1 riscv64 1.7.0-1 [137 kB] Get:246 http://ftpmaster.internal/ubuntu noble/main riscv64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:247 http://ftpmaster.internal/ubuntu noble/main riscv64 x11proto-dev all 2023.2-1 [602 kB] Get:248 http://ftpmaster.internal/ubuntu noble/main riscv64 libxau-dev riscv64 1:1.0.9-1build5 [12.9 kB] Get:249 http://ftpmaster.internal/ubuntu noble/main riscv64 libxdmcp-dev riscv64 1:1.1.3-0ubuntu5 [36.1 kB] Get:250 http://ftpmaster.internal/ubuntu noble/main riscv64 xtrans-dev all 1.4.0-1 [68.9 kB] Get:251 http://ftpmaster.internal/ubuntu noble/main riscv64 libpthread-stubs0-dev riscv64 0.4-1build2 [5500 B] Get:252 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb1-dev riscv64 1.15-1 [151 kB] Get:253 http://ftpmaster.internal/ubuntu noble/main riscv64 libx11-dev riscv64 2:1.8.7-1 [1382 kB] Get:254 http://ftpmaster.internal/ubuntu noble/main riscv64 libglx-dev riscv64 1.7.0-1 [14.2 kB] Get:255 http://ftpmaster.internal/ubuntu noble/main riscv64 libgl-dev riscv64 1.7.0-1 [102 kB] Get:256 http://ftpmaster.internal/ubuntu noble/universe riscv64 libglew2.2 riscv64 2.2.0-4 [212 kB] Get:257 http://ftpmaster.internal/ubuntu noble/main riscv64 libopengl0 riscv64 1.7.0-1 [47.0 kB] Get:258 http://ftpmaster.internal/ubuntu noble/main riscv64 libglu1-mesa riscv64 9.0.2-1.1 [180 kB] Get:259 http://ftpmaster.internal/ubuntu noble/main riscv64 libopengl-dev riscv64 1.7.0-1 [3436 B] Get:260 http://ftpmaster.internal/ubuntu noble/main riscv64 libglu1-mesa-dev riscv64 9.0.2-1.1 [614 kB] Get:261 http://ftpmaster.internal/ubuntu noble/main riscv64 libgraphite2-3 riscv64 1.3.14-2 [94.1 kB] Get:262 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libharfbuzz0b riscv64 8.3.0-2build2 [576 kB] Get:263 http://ftpmaster.internal/ubuntu noble/main riscv64 libthai-data all 0.1.29-2 [158 kB] Get:264 http://ftpmaster.internal/ubuntu noble/main riscv64 libthai0 riscv64 0.1.29-2 [19.2 kB] Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpango-1.0-0 riscv64 1.52.1+ds-1build1 [237 kB] Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpangoft2-1.0-0 riscv64 1.52.1+ds-1build1 [43.5 kB] Get:267 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpangocairo-1.0-0 riscv64 1.52.1+ds-1build1 [29.0 kB] Get:268 http://ftpmaster.internal/ubuntu noble/main riscv64 libwayland-cursor0 riscv64 1.22.0-2.1 [10.2 kB] Get:269 http://ftpmaster.internal/ubuntu noble/main riscv64 libwayland-egl1 riscv64 1.22.0-2.1 [5362 B] Get:270 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcomposite1 riscv64 1:0.4.5-1build2 [6570 B] Get:271 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcursor1 riscv64 1:1.2.1-1 [18.9 kB] Get:272 http://ftpmaster.internal/ubuntu noble/main riscv64 libxdamage1 riscv64 1:1.1.6-1 [5454 B] Get:273 http://ftpmaster.internal/ubuntu noble/main riscv64 libxinerama1 riscv64 2:1.1.4-3 [6616 B] Get:274 http://ftpmaster.internal/ubuntu noble/main riscv64 libxkbcommon0 riscv64 1.6.0-1 [121 kB] Get:275 http://ftpmaster.internal/ubuntu noble/main riscv64 libxrandr2 riscv64 2:1.5.2-2 [17.6 kB] Get:276 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgtk-3-common all 3.24.41-1.1ubuntu4 [1202 kB] Get:277 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgtk-3-0t64 riscv64 3.24.41-1.1ubuntu4 [3053 kB] Get:278 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgudev-1.0-0 riscv64 1:238-5ubuntu1 [15.7 kB] Get:279 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhdf5-cpp-103-1t64 riscv64 1.10.10+repack-3.1ubuntu4 [128 kB] Get:280 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhdf5-fortran-102t64 riscv64 1.10.10+repack-3.1ubuntu4 [88.3 kB] Get:281 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhdf5-hl-100t64 riscv64 1.10.10+repack-3.1ubuntu4 [60.7 kB] Get:282 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhdf5-hl-fortran-100t64 riscv64 1.10.10+repack-3.1ubuntu4 [32.8 kB] Get:283 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhdf5-hl-cpp-100t64 riscv64 1.10.10+repack-3.1ubuntu4 [11.1 kB] Get:284 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-turbo8-dev riscv64 2.1.5-2ubuntu1 [434 kB] Get:285 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu11 [1486 B] Get:286 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-dev riscv64 8c-2ubuntu11 [1484 B] Get:287 http://ftpmaster.internal/ubuntu noble/universe riscv64 libaec-dev riscv64 1.1.2-1 [46.2 kB] Get:288 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libssl-dev riscv64 3.0.13-0ubuntu3 [5178 kB] Get:289 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libhdf5-dev riscv64 1.10.10+repack-3.1ubuntu4 [6906 kB] Get:290 http://ftpmaster.internal/ubuntu noble/main riscv64 libice6 riscv64 2:1.0.10-1build2 [37.3 kB] Get:291 http://ftpmaster.internal/ubuntu noble/main riscv64 libimagequant0 riscv64 2.18.0-1 [39.5 kB] Get:292 http://ftpmaster.internal/ubuntu noble/main riscv64 libevdev2 riscv64 1.13.1+dfsg-1 [30.8 kB] Get:293 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libwacom-common all 2.10.0-2 [63.4 kB] Get:294 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libwacom9 riscv64 2.10.0-2 [24.2 kB] Get:295 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libinput-bin riscv64 1.25.0-1ubuntu2 [26.8 kB] Get:296 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmtdev1t64 riscv64 1.1.6-1.1build1 [15.0 kB] Get:297 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libinput10 riscv64 1.25.0-1ubuntu2 [139 kB] Get:298 http://ftpmaster.internal/ubuntu noble/universe riscv64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:299 http://ftpmaster.internal/ubuntu noble/main riscv64 liblapack3 riscv64 3.12.0-3 [2299 kB] Get:300 http://ftpmaster.internal/ubuntu noble/universe riscv64 liblbfgsb0 riscv64 3.0+dfsg.4-1 [27.6 kB] Get:301 http://ftpmaster.internal/ubuntu noble/main riscv64 liblerc-dev riscv64 4.0.0+ds-4ubuntu1 [895 kB] Get:302 http://ftpmaster.internal/ubuntu noble/universe riscv64 liblzf1 riscv64 3.6-4 [7448 B] Get:303 http://ftpmaster.internal/ubuntu noble/universe riscv64 libmd4c0 riscv64 0.4.8-1 [40.8 kB] Get:304 http://ftpmaster.internal/ubuntu noble/universe riscv64 libnetcdf19t64 riscv64 1:4.9.2-5ubuntu3 [503 kB] Get:305 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libnotify4 riscv64 0.8.3-1build2 [26.2 kB] Get:306 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-16-0 riscv64 10.42-4ubuntu1 [130 kB] Get:307 http://ftpmaster.internal/ubuntu noble/main riscv64 libpcre2-32-0 riscv64 10.42-4ubuntu1 [123 kB] Get:308 http://ftpmaster.internal/ubuntu noble/main riscv64 libpkgconf3 riscv64 1.8.1-2 [27.8 kB] Get:309 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3-all-dev riscv64 3.12.2-0ubuntu2 [914 B] Get:310 http://ftpmaster.internal/ubuntu noble/universe riscv64 libqhull-r8.0 riscv64 2020.2-6 [181 kB] Get:311 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5core5t64 riscv64 5.15.12+dfsg-3ubuntu7 [2153 kB] Get:312 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5dbus5t64 riscv64 5.15.12+dfsg-3ubuntu7 [233 kB] Get:313 http://ftpmaster.internal/ubuntu noble/main riscv64 libegl1 riscv64 1.7.0-1 [36.7 kB] Get:314 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5network5t64 riscv64 5.15.12+dfsg-3ubuntu7 [767 kB] Get:315 http://ftpmaster.internal/ubuntu noble/main riscv64 libsm6 riscv64 2:1.2.3-1build2 [15.3 kB] Get:316 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-icccm4 riscv64 0.4.1-1.1build2 [9870 B] Get:317 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-util1 riscv64 0.4.0-1build2 [10.1 kB] Get:318 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-image0 riscv64 0.4.0-2 [10.5 kB] Get:319 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-keysyms1 riscv64 0.4.0-1build3 [8028 B] Get:320 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-render-util0 riscv64 0.3.9-1build3 [9406 B] Get:321 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-shape0 riscv64 1.15-1 [5514 B] Get:322 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-xinerama0 riscv64 1.15-1 [4922 B] Get:323 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-xinput0 riscv64 1.15-1 [27.8 kB] Get:324 http://ftpmaster.internal/ubuntu noble/main riscv64 libxcb-xkb1 riscv64 1.15-1 [28.1 kB] Get:325 http://ftpmaster.internal/ubuntu noble/main riscv64 libxkbcommon-x11-0 riscv64 1.6.0-1 [15.3 kB] Get:326 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5gui5t64 riscv64 5.15.12+dfsg-3ubuntu7 [3652 kB] Get:327 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5widgets5t64 riscv64 5.15.12+dfsg-3ubuntu7 [2718 kB] Get:328 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5xml5t64 riscv64 5.15.12+dfsg-3ubuntu7 [131 kB] Get:329 http://ftpmaster.internal/ubuntu noble/universe riscv64 libqt5designer5 riscv64 5.15.12-2build2 [2879 kB] Get:330 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5sql5t64 riscv64 5.15.12+dfsg-3ubuntu7 [127 kB] Get:331 http://ftpmaster.internal/ubuntu noble/universe riscv64 libqt5help5 riscv64 5.15.12-2build2 [170 kB] Get:332 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5opengl5t64 riscv64 5.15.12+dfsg-3ubuntu7 [155 kB] Get:333 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5printsupport5t64 riscv64 5.15.12+dfsg-3ubuntu7 [214 kB] Get:334 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libqt5test5t64 riscv64 5.15.12+dfsg-3ubuntu7 [147 kB] Get:335 http://ftpmaster.internal/ubuntu noble/main riscv64 libraqm0 riscv64 0.10.1-1 [13.2 kB] Get:336 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsharpyuv-dev riscv64 1.3.2-0.4build3 [24.9 kB] Get:337 http://ftpmaster.internal/ubuntu noble/universe riscv64 libssm2 riscv64 1.4.0-2 [77.8 kB] Get:338 http://ftpmaster.internal/ubuntu noble/universe riscv64 libssm-dev riscv64 1.4.0-2 [14.0 kB] Get:339 http://ftpmaster.internal/ubuntu noble/main riscv64 libjbig-dev riscv64 2.1-6.1ubuntu1 [49.4 kB] Get:340 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma-dev riscv64 5.6.1+really5.4.5-1 [343 kB] Get:341 http://ftpmaster.internal/ubuntu noble/main riscv64 libzstd-dev riscv64 1.5.5+dfsg2-2 [1758 kB] Get:342 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libwebpdemux2 riscv64 1.3.2-0.4build3 [13.1 kB] Get:343 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libwebpmux3 riscv64 1.3.2-0.4build3 [28.3 kB] Get:344 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libwebpdecoder3 riscv64 1.3.2-0.4build3 [93.8 kB] Get:345 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libwebp-dev riscv64 1.3.2-0.4build3 [783 kB] Get:346 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtiffxx6 riscv64 4.5.1+git230720-4ubuntu2 [5758 B] Get:347 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtiff-dev riscv64 4.5.1+git230720-4ubuntu2 [700 kB] Get:348 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libwxbase3.2-1t64 riscv64 3.2.4+dfsg-4build1 [1059 kB] Get:349 http://ftpmaster.internal/ubuntu noble/main riscv64 libxtst6 riscv64 2:1.2.3-1.1 [12.3 kB] Get:350 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libwxgtk3.2-1t64 riscv64 3.2.4+dfsg-4build1 [5026 kB] Get:351 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libwxgtk-gl3.2-1t64 riscv64 3.2.4+dfsg-4build1 [53.9 kB] Get:352 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libxslt1.1 riscv64 1.1.39-0exp1build1 [177 kB] Get:353 http://ftpmaster.internal/ubuntu noble/main riscv64 pkgconf-bin riscv64 1.8.1-2 [20.4 kB] Get:354 http://ftpmaster.internal/ubuntu noble/main riscv64 pkgconf riscv64 1.8.1-2 [16.7 kB] Get:355 http://ftpmaster.internal/ubuntu noble/main riscv64 pkg-config riscv64 1.8.1-2 [7172 B] Get:356 http://ftpmaster.internal/ubuntu noble/universe riscv64 pybind11-dev all 2.11.1-2 [159 kB] Get:357 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 pymol-data all 2.5.0+dfsg-1build6 [1353 kB] Get:358 http://ftpmaster.internal/ubuntu noble/universe riscv64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] Get:359 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all riscv64 3.12.2-0ubuntu2 [890 B] Get:360 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-all-dev riscv64 3.12.2-0ubuntu2 [908 B] Get:361 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-appdirs all 1.4.4-4 [10.9 kB] Get:362 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-attr all 23.2.0-2 [48.6 kB] Get:363 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-numpy riscv64 1:1.26.4+ds-6ubuntu1 [3669 kB] Get:364 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-chardet all 5.2.0+dfsg-1 [117 kB] Get:365 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-tk riscv64 3.12.2-3ubuntu4 [103 kB] Get:366 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-pil.imagetk riscv64 10.2.0-1 [9616 B] Get:367 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libopenjp2-7 riscv64 2.5.0-2build3 [200 kB] Get:368 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pil riscv64 10.2.0-1 [506 kB] Get:369 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-cairo riscv64 1.25.1-2build2 [122 kB] Get:370 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-freetype all 2.4.0-1 [83.1 kB] Get:371 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-rlpycairo all 0.3.0-3 [9130 B] Get:372 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-reportlab all 4.1.0-4 [1105 kB] Get:373 http://ftpmaster.internal/ubuntu noble/main riscv64 xml-core all 0.19 [20.3 kB] Get:374 http://ftpmaster.internal/ubuntu noble/universe riscv64 w3c-sgml-lib all 1.3-3 [280 kB] Get:375 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-biopython riscv64 1.81+dfsg-3 [2190 kB] Get:376 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-brotli riscv64 1.1.0-2build2 [390 kB] Get:377 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-certifi all 2023.11.17-1 [165 kB] Get:378 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-contourpy riscv64 1.0.7-2build1 [202 kB] Get:379 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-cycler all 0.11.0-2 [8202 B] Get:380 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-six all 1.16.0-4 [12.4 kB] Get:381 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-dateutil all 2.8.2-3 [79.2 kB] Get:382 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-decorator all 5.1.1-5 [10.1 kB] Get:383 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-scipy riscv64 1.11.4-6 [20.2 MB] Get:384 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] Get:385 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-mpmath all 1.2.1-3 [421 kB] Get:386 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-sympy all 1.12-7 [3966 kB] Get:387 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-tz all 2024.1-2 [31.4 kB] Get:388 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-fs all 2.4.16-3 [91.1 kB] Get:389 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-lxml riscv64 5.1.0-1build2 [1353 kB] Get:390 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-lz4 riscv64 4.0.2+dfsg-1build4 [26.6 kB] Get:391 http://ftpmaster.internal/ubuntu noble/universe riscv64 unicode-data all 15.1.0-1 [8878 kB] Get:392 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-fonttools riscv64 4.46.0-1build2 [1436 kB] Get:393 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-h5py-serial riscv64 3.10.0-1ubuntu3 [947 kB] Get:394 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] Get:395 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-idna all 3.6-2 [46.0 kB] Get:396 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-iniconfig all 1.1.1-2 [6024 B] Get:397 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-kiwisolver riscv64 1.4.4-2build1 [65.7 kB] Get:398 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pyparsing all 3.1.1-1 [86.2 kB] Get:399 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-packaging all 23.2-1 [40.6 kB] Get:400 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-matplotlib riscv64 3.6.3-1ubuntu3 [6970 kB] Get:401 http://ftpmaster.internal/ubuntu noble/main riscv64 sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1012 kB] Get:402 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-mrcfile all 1.4.3-3 [110 kB] Get:403 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-msgpack riscv64 1.0.3-3build1 [101 kB] Get:404 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pint all 0.19.2-1 [170 kB] Get:405 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-nxmx all 0.0.3-2 [15.3 kB] Get:406 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-opengl all 3.1.7+dfsg-1 [612 kB] Get:407 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-orderedset riscv64 2.0.3+ds1-2 [102 kB] Get:408 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-wheel all 0.42.0-2 [53.1 kB] Get:409 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-pip all 24.0+dfsg-1ubuntu1 [1316 kB] Get:410 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-pluggy all 1.4.0-1 [20.4 kB] Get:411 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-procrunner all 2.3.3-1 [11.9 kB] Get:412 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-psutil riscv64 5.9.8-2build1 [196 kB] Get:413 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-pycbf riscv64 0.9.7+dfsg1-3.1build2 [157 kB] Get:414 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-pyqt5.sip riscv64 12.13.0-1build3 [62.8 kB] Get:415 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-pyqt5 riscv64 5.15.10+dfsg-1build4 [2754 kB] Get:416 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-pyqt5.qtopengl riscv64 5.15.10+dfsg-1build4 [131 kB] Get:417 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-pymol riscv64 2.5.0+dfsg-1build6 [3970 kB] Get:418 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-pytest all 8.0.2-1 [248 kB] Get:419 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-urllib3 all 2.0.7-1 [113 kB] Get:420 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-requests all 2.31.0+dfsg-1ubuntu1 [50.7 kB] Get:421 http://ftpmaster.internal/ubuntu noble/universe riscv64 python3-tqdm all 4.66.2-2 [91.1 kB] Get:422 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 python3-wxgtk4.0 riscv64 4.2.1+dfsg-3build2 [7888 kB] Get:423 http://ftpmaster.internal/ubuntu noble/universe riscv64 scons all 4.5.2+dfsg-1 [577 kB] Get:424 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 dh-exec riscv64 0.29build1 [26.6 kB] Get:425 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 libcbf-dev riscv64 0.9.7+dfsg1-3.1build2 [1483 kB] Get:426 http://ftpmaster.internal/ubuntu noble/universe riscv64 libeigen3-dev all 3.4.0-4 [1056 kB] Get:427 http://ftpmaster.internal/ubuntu noble/main riscv64 liblz4-dev riscv64 1.9.4-1 [334 kB] Preconfiguring packages ... Fetched 277 MB in 43s (6401 kB/s) Selecting previously unselected package libpython3.12-minimal:riscv64. (Reading database ... 15732 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.2-5ubuntu2_riscv64.deb ... Unpacking libpython3.12-minimal:riscv64 (3.12.2-5ubuntu2) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.6.1-2build1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.2-5ubuntu2_riscv64.deb ... Unpacking python3.12-minimal (3.12.2-5ubuntu2) ... Setting up libpython3.12-minimal:riscv64 (3.12.2-5ubuntu2) ... Setting up libexpat1:riscv64 (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.2-5ubuntu2) ... Selecting previously unselected package python3-minimal. (Reading database ... 16050 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.2-0ubuntu2_riscv64.deb ... Unpacking python3-minimal (3.12.2-0ubuntu2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libpython3.12-stdlib:riscv64. Preparing to unpack .../3-libpython3.12-stdlib_3.12.2-5ubuntu2_riscv64.deb ... Unpacking libpython3.12-stdlib:riscv64 (3.12.2-5ubuntu2) ... Selecting previously unselected package python3.12. Preparing to unpack .../4-python3.12_3.12.2-5ubuntu2_riscv64.deb ... Unpacking python3.12 (3.12.2-5ubuntu2) ... Selecting previously unselected package libpython3-stdlib:riscv64. Preparing to unpack .../5-libpython3-stdlib_3.12.2-0ubuntu2_riscv64.deb ... Unpacking libpython3-stdlib:riscv64 (3.12.2-0ubuntu2) ... Setting up python3-minimal (3.12.2-0ubuntu2) ... Selecting previously unselected package python3. (Reading database ... 16490 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.2-0ubuntu2_riscv64.deb ... Unpacking python3 (3.12.2-0ubuntu2) ... Selecting previously unselected package libpopt0:riscv64. Preparing to unpack .../001-libpopt0_1.19+dfsg-1_riscv64.deb ... Unpacking libpopt0:riscv64 (1.19+dfsg-1) ... Selecting previously unselected package rsync. Preparing to unpack .../002-rsync_3.2.7-1build2_riscv64.deb ... Unpacking rsync (3.2.7-1build2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../003-fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../004-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libdbus-1-3:riscv64. 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Unpacking dbus (1.14.10-4ubuntu3) ... Selecting previously unselected package libpam-systemd:riscv64. Preparing to unpack .../011-libpam-systemd_255.4-1ubuntu6_riscv64.deb ... Unpacking libpam-systemd:riscv64 (255.4-1ubuntu6) ... Selecting previously unselected package dbus-user-session. Preparing to unpack .../012-dbus-user-session_1.14.10-4ubuntu3_riscv64.deb ... Unpacking dbus-user-session (1.14.10-4ubuntu3) ... Selecting previously unselected package libbsd0:riscv64. Preparing to unpack .../013-libbsd0_0.12.1-1build1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.12.1-1build1) ... Selecting previously unselected package libelf1t64:riscv64. Preparing to unpack .../014-libelf1t64_0.190-1.1build3_riscv64.deb ... Unpacking libelf1t64:riscv64 (0.190-1.1build3) ... Selecting previously unselected package libfribidi0:riscv64. Preparing to unpack .../015-libfribidi0_1.0.13-3_riscv64.deb ... Unpacking libfribidi0:riscv64 (1.0.13-3) ... 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Setting up libxdamage1:riscv64 (1:1.1.6-1) ... Setting up libxcb1-dev:riscv64 (1.15-1) ... Setting up libcbf1t64:riscv64 (0.9.7+dfsg1-3.1build2) ... Setting up libxrender1:riscv64 (1:0.9.10-1.1) ... Setting up libgbm1:riscv64 (24.0.3-1ubuntu4) ... Setting up ibverbs-providers:riscv64 (50.0-2build2) ... Setting up libdrm-radeon1:riscv64 (2.4.120-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:riscv64 (1.52.1+ds-1build1) ... Setting up libhdf5-cpp-103-1t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up libgl1-mesa-dri:riscv64 (24.0.3-1ubuntu4) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu11) ... Setting up libx11-dev:riscv64 (2:1.8.7-1) ... Setting up libxext6:riscv64 (2:1.3.4-1build1) ... Setting up libhdf5-fortran-102t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up python3 (3.12.2-0ubuntu2) ... Setting up libpython3.12-dev:riscv64 (3.12.2-5ubuntu2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up man-db (2.12.0-4build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up python3-wheel (0.42.0-2) ... Setting up libcairo2:riscv64 (1.18.0-3) ... Setting up python3-psutil (5.9.8-2build1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-orderedset (2.0.3+ds1-2) ... Setting up libxxf86vm1:riscv64 (1:1.1.4-1build3) ... Setting up libxnvctrl0:riscv64 (510.47.03-0ubuntu4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:riscv64 (10.2.0-1) ... Setting up dbus-user-session (1.14.10-4ubuntu3) ... Setting up libqt5core5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up python3-decorator (5.1.1-5) ... Setting up libegl-mesa0:riscv64 (24.0.3-1ubuntu4) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up libtiff-dev:riscv64 (4.5.1+git230720-4ubuntu2) ... Setting up libxfixes3:riscv64 (1:6.0.0-2) ... Setting up libnotify4:riscv64 (0.8.3-1build2) ... Setting up python3-brotli (1.1.0-2build2) ... Setting up python3-cycler (0.11.0-2) ... Setting up libxinerama1:riscv64 (2:1.1.4-3) ... Setting up python3-pycbf (0.9.7+dfsg1-3.1build2) ... Setting up python3-kiwisolver (1.4.4-2build1) ... Setting up python3-idna (3.6-2) ... Setting up libxrandr2:riscv64 (2:1.5.2-2) ... Setting up python3.12-dev (3.12.2-5ubuntu2) ... Setting up python3-urllib3 (2.0.7-1) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-pyqt5.sip (12.13.0-1build3) ... Setting up python3-lxml:riscv64 (5.1.0-1build2) ... Setting up libegl1:riscv64 (1.7.0-1) ... Setting up libqt5sql5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up librdmacm1t64:riscv64 (50.0-2build2) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-msgpack (1.0.3-3build1) ... Setting up libcairo-gobject2:riscv64 (1.18.0-3) ... Setting up libxss1:riscv64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:riscv64 (1.52.1+ds-1build1) ... Setting up python3-mpmath (1.2.1-3) ... Setting up libhdf5-hl-cpp-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up python3-appdirs (1.4.4-4) ... Setting up libcups2t64:riscv64 (2.4.7-1.2ubuntu3) ... Setting up python3-procrunner (2.3.3-1) ... Setting up libboost-thread-dev:riscv64 (1.83.0.1ubuntu2) ... Setting up libpangocairo-1.0-0:riscv64 (1.52.1+ds-1build1) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up libfabric1:riscv64 (1.17.0-3build2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up libxft2:riscv64 (2.3.6-1) ... Setting up libqt5dbus5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up libglx-mesa0:riscv64 (24.0.3-1ubuntu4) ... Setting up libpython3-dev:riscv64 (3.12.2-0ubuntu2) ... Setting up python3-cairo (1.25.1-2build2) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up libxi6:riscv64 (2:1.8.1-1) ... Setting up libglx0:riscv64 (1.7.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1build4) ... Setting up python3-pytest (8.0.2-1) ... Setting up libxtst6:riscv64 (2:1.2.3-1.1) ... Setting up libtk8.6:riscv64 (8.6.14-1build1) ... Setting up libxcursor1:riscv64 (1:1.2.1-1) ... Setting up python3-tqdm (4.66.2-2) ... Setting up libqt5network5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up libhdf5-hl-fortran-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up libqt5xml5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up python3-all (3.12.2-0ubuntu2) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up dconf-service (0.40.0-4build2) ... Setting up dh-exec (0.29build1) ... Setting up libqt5test5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up libhwloc-plugins:riscv64 (2.10.0-1) ... Setting up pybind11-dev (2.11.1-2) ... Setting up python3-fs (2.4.16-3) ... Setting up python3-pint (0.19.2-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up libgl1:riscv64 (1.7.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up libpython3-all-dev:riscv64 (3.12.2-0ubuntu2) ... Setting up libatspi2.0-0t64:riscv64 (2.52.0-1) ... Setting up python3-dev (3.12.2-0ubuntu2) ... Setting up python3-requests (2.31.0+dfsg-1ubuntu1) ... Setting up libboost-python1.83-dev (1.83.0-2.1ubuntu2) ... Setting up libhdf5-dev (1.10.10+repack-3.1ubuntu4) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up scons (4.5.2+dfsg-1) ... Setting up libpmix2t64:riscv64 (5.0.1-4.1build1) ... Setting up python3-pip (24.0+dfsg-1ubuntu1) ... Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ... Setting up libglew2.2:riscv64 (2.2.0-4) ... Setting up libopenmpi3t64:riscv64 (4.1.6-7ubuntu2) ... Setting up python3-reportlab (4.1.0-4) ... Setting up libglx-dev:riscv64 (1.7.0-1) ... Setting up python3-contourpy (1.0.7-2build1) ... Setting up libgl-dev:riscv64 (1.7.0-1) ... Setting up python3-mrcfile (1.4.3-3) ... Setting up dh-python (6.20240401) ... Setting up python3-all-dev (3.12.2-0ubuntu2) ... Setting up libatk-bridge2.0-0t64:riscv64 (2.52.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-scipy (1.11.4-6) ... Setting up dconf-gsettings-backend:riscv64 (0.40.0-4build2) ... Setting up blt (2.5.3+dfsg-7) ... Setting up sfftw2 (2.1.5-6build2) ... Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... Setting up python3-tk:riscv64 (3.12.2-3ubuntu4) ... Setting up python3-opengl (3.1.7+dfsg-1) ... /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' '''OpenGL extension AMD.vertex_shader_tessellator Setting up libboost-python-dev (1.83.0.1ubuntu2) ... Setting up libqt5gui5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up fftw2 (2.1.5-6build2) ... Setting up python3-pil.imagetk:riscv64 (10.2.0-1) ... Setting up libcbf-dev:riscv64 (0.9.7+dfsg1-3.1build2) ... Setting up python3-h5py (3.10.0-1ubuntu3) ... Setting up sfftw-dev (2.1.5-6build2) ... Setting up libglu1-mesa-dev:riscv64 (9.0.2-1.1) ... Setting up libclipper2:riscv64 (2.1.20201109-2) ... Setting up fftw-dev (2.1.5-6build2) ... Setting up python3-nxmx (0.0.3-2) ... Setting up libgtk-3-common (3.24.41-1.1ubuntu4) ... Setting up libqt5widgets5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up libqt5help5:riscv64 (5.15.12-2build2) ... Setting up libclipper-dev:riscv64 (2.1.20201109-2) ... Setting up libqt5opengl5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up libqt5printsupport5t64:riscv64 (5.15.12+dfsg-3ubuntu7) ... Setting up libqt5designer5:riscv64 (5.15.12-2build2) ... Setting up python3-pyqt5 (5.15.10+dfsg-1build4) ... Setting up python3-pyqt5.qtopengl (5.15.10+dfsg-1build4) ... Setting up python3-pymol (2.5.0+dfsg-1build6) ... /usr/lib/python3/dist-packages/chempy/sdf.py:23: SyntaxWarning: invalid escape sequence '\s' getkee = re.compile("^>\s+<([^>]*)>") /usr/lib/python3/dist-packages/chempy/sdf.py:24: SyntaxWarning: invalid escape sequence '\s' gettag = re.compile("^>\s+<[^>]*>\s+\((.*)\)") /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:849: SyntaxWarning: invalid escape sequence '\.' g = re.search("(.*)(\..*)$", save_file) /usr/lib/python3/dist-packages/pmg_tk/skins/normal/__init__.py:889: SyntaxWarning: invalid escape sequence '\.' if re.search("\.pym*$|\.PYM*$",ofile): /usr/lib/python3/dist-packages/pymol/internal.py:252: SyntaxWarning: invalid escape sequence '\.' if re.search("[0-9]*\.png$",fname): # remove numbering, etc. /usr/lib/python3/dist-packages/pymol/internal.py:253: SyntaxWarning: invalid escape sequence '\.' fname = re.sub("[0-9]*\.png$","",fname) /usr/lib/python3/dist-packages/pymol/internal.py:254: SyntaxWarning: invalid escape sequence '\.' if re.search("[0-9]*\.ppm$",fname): /usr/lib/python3/dist-packages/pymol/internal.py:257: SyntaxWarning: invalid escape sequence '\.' fname = re.sub("[0-9]*\.ppm$","",fname) /usr/lib/python3/dist-packages/pymol/movie.py:818: SyntaxWarning: invalid escape sequence '\W' '''Return full path to executable or None. /usr/lib/python3/dist-packages/pymol/moving.py:733: SyntaxWarning: invalid escape sequence '\s' input = re.sub("\s"," ",specification) /usr/lib/python3/dist-packages/pymol/parser.py:48: SyntaxWarning: invalid escape sequence '\[' remove_lists_re = re.compile("\[[^\]]*\]") /usr/lib/python3/dist-packages/pymol/parser.py:408: SyntaxWarning: invalid escape sequence '\.' if re.search("\.py$|\.pym$",path) is not None: /usr/lib/python3/dist-packages/pymol/plugins/installation.py:23: SyntaxWarning: invalid escape sequence '\p' ''' /usr/lib/python3/dist-packages/pymol/viewing.py:899: SyntaxWarning: invalid escape sequence '\.' re_pat = re.compile("[0-9]+\.") /usr/lib/python3/dist-packages/pymol/viewing.py:912: SyntaxWarning: invalid escape sequence '\.' new_file = re.sub("\.pse$",".psw",new_file,re.I) /usr/lib/python3/dist-packages/pymol/viewing.py:914: SyntaxWarning: invalid escape sequence '\.' new_file = re.sub("\.psw$",".pse",new_file,re.I) /usr/lib/python3/dist-packages/pymol/wizard/pseudoatom.py:13: SyntaxWarning: invalid escape sequence '\8' self.prefix = 'Label text: \888' Setting up python3-fonttools (4.46.0-1build2) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk-3-0t64:riscv64 (3.24.41-1.1ubuntu4) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up libwxgtk3.2-1t64:riscv64 (3.2.4+dfsg-4build1) ... Setting up libwxgtk-gl3.2-1t64:riscv64 (3.2.4+dfsg-4build1) ... Setting up python3-matplotlib (3.6.3-1ubuntu3) ... Setting up python3-wxgtk4.0 (4.2.1+dfsg-3build2) ... Setting up humanity-icon-theme (0.6.16) ... Setting up ubuntu-mono (24.04-0ubuntu1) ... Processing triggers for systemd (255.4-1ubuntu6) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in amd64 arm64 armel armhf i386 ppc64 ppc64el riscv64 s390x) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 (riscv64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240315-1ubuntu1 linux-libc-dev_6.8.0-20.20 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 adwaita-icon-theme_46.0-1 apt_2.7.14build2 apt-utils_2.7.14build2 at-spi2-common_2.52.0-1 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu1 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-riscv64-linux-gnu_2.42-4ubuntu2 blt_2.5.3+dfsg-7 bsdextrautils_2.39.3-9ubuntu4 bsdutils_1:2.39.3-9ubuntu4 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu5 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu3 cpp-13-riscv64-linux-gnu_13.2.0-23ubuntu3 cpp-riscv64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 dbus_1.14.10-4ubuntu3 dbus-bin_1.14.10-4ubuntu3 dbus-daemon_1.14.10-4ubuntu3 dbus-session-bus-common_1.14.10-4ubuntu3 dbus-system-bus-common_1.14.10-4ubuntu3 dbus-user-session_1.14.10-4ubuntu3 dconf-gsettings-backend_0.40.0-4build2 dconf-service_0.40.0-4build2 debconf_1.5.86 debconf-i18n_1.5.86 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build1 dh-autoreconf_20 dh-exec_0.29build1 dh-python_6.20240401 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu3 fakeroot_1.33-1 fftw-dev_2.1.5-6build2 fftw2_2.1.5-6build2 file_1:5.45-3build1 findutils_4.9.0-5 fontconfig_2.15.0-1.1ubuntu2 fontconfig-config_2.15.0-1.1ubuntu2 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-lato_2.015-1 fonts-lyx_2.4.0~RC3-1build3 fonts-urw-base35_20200910-8 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu3 g++-13-riscv64-linux-gnu_13.2.0-23ubuntu3 g++-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu3 gcc-13-base_13.2.0-23ubuntu3 gcc-13-riscv64-linux-gnu_13.2.0-23ubuntu3 gcc-14-base_14-20240315-1ubuntu1 gcc-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu1 gettext-base_0.21-14ubuntu1 gpg_2.4.4-2ubuntu16 gpg-agent_2.4.4-2ubuntu16 gpgconf_2.4.4-2ubuntu16 gpgv_2.4.4-2ubuntu16 grep_3.11-4 groff-base_1.23.0-3build2 gtk-update-icon-cache_3.24.41-1.1ubuntu4 gzip_1.12-1ubuntu2 hdf5-helpers_1.10.10+repack-3.1ubuntu4 hicolor-icon-theme_0.17-2 hostname_3.23+nmu2ubuntu1 humanity-icon-theme_0.6.16 ibverbs-providers_50.0-2build2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 jq_1.7.1-3build1 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1 libaec-dev_1.1.2-1 libaec0_1.1.2-1 libann-cctbx-dev_1.1.2+doc-9 libann-cctbx0_1.1.2+doc-9 libantlr3c-3.4-0_3.4+dfsg-4build1 libantlr3c-dev_3.4+dfsg-4build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_14-20240315-1ubuntu1 libassuan0_2.5.6-1 libatk-bridge2.0-0t64_2.52.0-1 libatk1.0-0t64_2.52.0-1 libatomic1_14-20240315-1ubuntu1 libatspi2.0-0t64_2.52.0-1 libattr1_1:2.5.2-1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libavahi-client3_0.8-13ubuntu5 libavahi-common-data_0.8-13ubuntu5 libavahi-common3_0.8-13ubuntu5 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x11-common_1:7.7+23ubuntu2 x11proto-dev_2023.2-1 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xkb-data_2.41-2 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: amd64 arm64 armel armhf i386 ppc64 ppc64el riscv64 s390x Version: 2023.12+ds2+~3.17.0+ds1-4build2 Maintainer: Ubuntu Developers Uploaders: Picca Frédéric-Emmanuel , Radostan Riedel , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Testsuite: autopkgtest Testsuite-Triggers: bitshuffle, g++, python3-all, python3-dials-data, python3-h5py, python3-pytest, python3-pytest-mock, python3-pytest-regressions Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-h5py (>= 3) , python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-nxmx, python3-orderedset, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest , python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm , python3-wxgtk4.0, rsync, scons Package-List: libcctbx-dev deb devel optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x libcctbx0 deb libs optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x python3-cctbx deb python optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x Checksums-Sha1: 583bc5895221491d4781f9b93c10e83631ea2a6c 352408 cctbx_2023.12+ds2+~3.17.0+ds1.orig-dxtbx.tar.xz d8d510a0b3209e405f33e661c932251e5a9927e6 23566808 cctbx_2023.12+ds2+~3.17.0+ds1.orig.tar.xz e8ab16390728cee05fdd6b8d4c6c8e1608658f38 417300 cctbx_2023.12+ds2+~3.17.0+ds1-4build2.debian.tar.xz Checksums-Sha256: 82bd787fee9624766cb748f58368535bcf7bb35100c660f397a07e93b5b906da 352408 cctbx_2023.12+ds2+~3.17.0+ds1.orig-dxtbx.tar.xz b9fb29501e5916d780e9088415d738fa4f115e2b698908ade233a1295fb352f7 23566808 cctbx_2023.12+ds2+~3.17.0+ds1.orig.tar.xz b4693a9c813197d80f254a54fca393fb353ee62a886561830aaa6781dd8d8053 417300 cctbx_2023.12+ds2+~3.17.0+ds1-4build2.debian.tar.xz Files: c4433045379327608dad40e2fb4f23a4 352408 cctbx_2023.12+ds2+~3.17.0+ds1.orig-dxtbx.tar.xz 5f5060528d2079c30a309afdea3c6a28 23566808 cctbx_2023.12+ds2+~3.17.0+ds1.orig.tar.xz 75462826a005dca4d0c68289a8fb1ced 417300 cctbx_2023.12+ds2+~3.17.0+ds1-4build2.debian.tar.xz Original-Maintainer: Debian Science Maintainers -----BEGIN PGP SIGNATURE----- iQJOBAEBCgA4FiEErEg/aN5yj0PyIC/KVo0w8yGyEz0FAmYJoYwaHHN0ZXZlLmxh bmdhc2VrQHVidW50dS5jb20ACgkQVo0w8yGyEz3xURAAmX8RcVi7PXN6HoVguRGw bAsz+IAF/qL54mMDGvdkMku+D1dX6voCRHbU7NQsnp5Q/39uW3j+smvTsfhQ9OAY XVF2FDzBwgYEic6hw7elvZwwZCuhYk866iQqNByLgt8NkjS+DgrqrDom3tiYgWAD Taim2iAUrRryUgcWvA/azSvVVW6fK2uOON7kJ8XgULhomGGXZsgYH5cbbQG+ie3N UfMye7jULEHK5MBISnklj/aZCsGnPneP6a4Ajs7cYQ0wR6PW2DvC/89TxJlb4OOv syJKW8dkyF6U9yEOZC1EALH6p6WpYVwEfMuvx0GbWxydtAsdZZeY3D+g5Al9DaRD Ilr9MT4apvI8DiWDeyt7NLuzT1rhM4NxfDWxIeC2THkpZNkFV9aa+7nU/4fKNjZM CscbabitlI0KkZjoES4BvJg9Nxl2MY1OJ2Hqe/KXCWYSnNiOK0y40xSUZkWxKGrQ z5Cqa+1dwCvXz0JTpAKST+3HUTJIgYEuBoMhnbcBs2qrfTfJ9gYNe4J71UX+/GAi icHPemvPIOMGeLlYP3RsQA22y7le4gBkGTZf6MCWNiX7KXpOKlJeo/Xo2mj76Fxi CVtmWKfU4iNHRn25++AQTWa4+bntp0qaHinur73paPa4j84hJQRnjUG62oMw8HBW vrPh9fNnXxKjpAbGuFoMnRw= =lXw4 -----END PGP SIGNATURE----- gpgv: Signature made Sun Mar 31 17:46:52 2024 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cctbx_2023.12+ds2+~3.17.0+ds1-4build2.dsc: no acceptable signature found dpkg-source: info: extracting cctbx in /<> dpkg-source: info: unpacking cctbx_2023.12+ds2+~3.17.0+ds1.orig.tar.xz dpkg-source: info: unpacking cctbx_2023.12+ds2+~3.17.0+ds1.orig-dxtbx.tar.xz dpkg-source: info: unpacking cctbx_2023.12+ds2+~3.17.0+ds1-4build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying workaround_env_config.patch dpkg-source: info: applying boost_adaptbx.patch dpkg-source: info: applying reproducible-timestamp.patch dpkg-source: info: applying libtbx_env-per-python-version.patch dpkg-source: info: applying iotbx_with_system_libraries.patch dpkg-source: info: applying 0007-iotbx-mtz-load-ccp4-data-from-the-right-directory.patch dpkg-source: info: applying 0009-scons-soname.patch dpkg-source: info: applying 0010-fix-cbflib_adaptbx-compilation-with-the-system-cbfli.patch dpkg-source: info: applying 0011-dxtbx-use-the-system-libraries.patch dpkg-source: info: applying 0012-dxtbx-remove-hdf5plugin.patch dpkg-source: info: applying 0013-dxtbx-do-not-modify-the-HDF5_PLUGIN_PATH.patch dpkg-source: info: applying 0015-dxtbx-adapte-the-boost_python-link-name.patch dpkg-source: info: applying 0016-cctbx-avoid-FTBFS-when-cctbx-is-already-installed.patch dpkg-source: info: applying 0017-cctbx-do-not-hide-sign-comparison.patch dpkg-source: info: applying 0017-dxtbx-fix-for-unsigned-char-arch.patch dpkg-source: info: applying 0016-unactivated-ucif-compilation.patch dpkg-source: info: applying 0017-smtbx-save-the-generated-test-file-under-tmp.patch dpkg-source: info: applying 0018-iotbx-link-with-ccp4c-instead-of-ccp4io.patch dpkg-source: info: applying 0019-cbflib_adapter-link-cbf-private-with-cbf.patch dpkg-source: info: applying 0020-spotfinder-link-with-dxtbxspotfinder.patch dpkg-source: info: applying 0021-rstbx-link-with-ann_adaptor.patch dpkg-source: info: applying 0022-rstbx-link-rstbx_integration_ext-with-ann_adaptor.patch dpkg-source: info: applying 0023-rstbx-use-the-annself_excluded-namespace-from-ann-cc.patch dpkg-source: info: applying 0024-more-ann-ann-cctbx.patch dpkg-source: info: applying 0031-Add-missing-ctdint-header.patch dpkg-source: info: applying 0026-adapt-format-registry-to-Python-3.12.patch dpkg-source: info: applying 0032-no-future.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27987400 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27987400 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27987400 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2023.12+ds2+~3.17.0+ds1-4build2 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' cp -f debian/setup.py setup.py # add missing __init__.py files. It seems that it doesn not work when I use a patch touch serialtbx/__init__.py touch serialtbx/detector/legacy_metrology/__init__.py touch serialtbx/mono_simulation/__init__.py touch serialtbx/util/__init__.py cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_clean pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-riscv64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; find . -name __pycache__ -type d -exec rm -rf {} \; rm -f setup.py rm -rf annlib annlib_adaptbx rm -rf ccp4io ccp4io_adaptbx rm -rf gui_resources rm -f serialtbx/__init__.py rm -f serialtbx/detector/legacy_metrology/__init__.py rm -f serialtbx/mono_simulation/__init__.py rm -f serialtbx/util/__init__.py make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars debian/files rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/ debian/python3-cctbx/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' cp -f debian/setup.py setup.py # add missing __init__.py files. It seems that it doesn not work when I use a patch touch serialtbx/__init__.py touch serialtbx/detector/legacy_metrology/__init__.py touch serialtbx/mono_simulation/__init__.py touch serialtbx/util/__init__.py cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources # configure the cctbx python modules dh_auto_configure pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config running config # configure dxtbx python modules dh_auto_configure --sourcedirectory=dxtbx pybuild --configure -i python{version} -p 3.12 --dir dxtbx I: pybuild base:311: python3.12 setup.py config Found 20 dxtbx dispatchers Found 134 Format classes running config # configure the cctbx libtbx build system dh_auto_configure -- -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ \ && {interpreter} /<>/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io" pybuild --configure -i python{version} -p 3.12 -s custom "--configure-args=mkdir -p {build_dir}_ && cd {build_dir}_ && {interpreter} /<>/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io" I: pybuild base:311: mkdir -p '/<>/.pybuild/cpython3_3.12/build'_ && cd '/<>/.pybuild/cpython3_3.12/build'_ && python3.12 /<>/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io Python: 3.12.2 "/usr/bin/python3.12" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=3 LDFLAGS = -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 command_version_suffix: None Relocatable paths anchored at: /<>/.pybuild/cpython3_3.12/build_ Top-down list of all modules involved: wxtbx "/<>/wxtbx" serialtbx "/<>/serialtbx" rstbx "/<>/rstbx" spotfinder "/<>/spotfinder" mmtbx "/<>/mmtbx" gltbx "/<>/gltbx" dxtbx "/<>/dxtbx" iotbx "/<>/iotbx" smtbx "/<>/smtbx" ucif "/<>/ucif" crys3d "/<>/crys3d" cctbx "/<>/cctbx" chiltbx "/<>/chiltbx" ccp4io+adaptbx "/<>/ccp4io" "/<>/ccp4io_adaptbx" cbflib_adaptbx "/<>/cbflib_adaptbx" annlib+adaptbx "/<>/annlib" "/<>/annlib_adaptbx" scitbx "/<>/scitbx" fable "/<>/fable" cma_es "/<>/cma_es" omptbx "/<>/omptbx" boost+adaptbx "/<>/boost" "/<>/boost_adaptbx" tbxx "/<>/tbxx" libtbx "/<>/libtbx" Creating files in build directory: "/<>/.pybuild/cpython3_3.12/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/<>/libtbx/command_line" Processing: "/<>/boost_adaptbx/command_line" Processing: "/<>/fable/command_line" Processing: "/<>/scitbx/command_line" Processing: "/<>/cbflib_adaptbx/command_line" Processing: "/<>/cctbx/command_line" Processing: "/<>/crys3d/command_line" Processing: "/<>/smtbx/command_line" Processing: "/<>/iotbx/command_line" Processing: "/<>/gltbx/command_line" Processing: "/<>/mmtbx/command_line" Processing: "/<>/spotfinder/command_line" Processing: "/<>/rstbx/command_line" Processing: "/<>/wxtbx/command_line" Processing: "/<>/libtbx/libtbx_refresh.py" Processing: "/<>/boost_adaptbx/libtbx_refresh.py" Processing: "/<>/scitbx/libtbx_refresh.py" Generating C++ header files in: "/<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///<>/cctbx-2023.12%2Bds2%2B~3.17.0%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Installing collected packages: dxtbx Running setup.py develop for dxtbx Successfully installed dxtbx Processing: "/<>/cctbx/libtbx_refresh.py" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/cctbx/eltbx" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/include/cctbx/boost_python" Processing: "/<>/crys3d/libtbx_refresh.py" Processing: "/<>/smtbx/libtbx_refresh.py" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/include/smtbx/boost_python" Processing: "/<>/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/<>/dxtbx/libtbx_refresh.py" Processing: "/<>/gltbx/libtbx_refresh.py" Generating C++ files in: "/<>/.pybuild/cpython3_3.12/build_/gltbx" fonts: 8x13 9x15 10x20 /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() Processing: "/<>/mmtbx/libtbx_refresh.py" Done. make[1]: Leaving directory '/<>' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' # build the python modules dh_auto_build pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/view_refinement.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/hydrogens_button.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/interactive_edit.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/validation_lists.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/ligand_checklist.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/simple_zoom_list.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/watch_file.py -> /<>/.pybuild/cpython3_3.12/build/cootbx copying cootbx/xmlrpc_server.py -> /<>/.pybuild/cpython3_3.12/build/cootbx creating /<>/.pybuild/cpython3_3.12/build/omptbx copying omptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/omptbx copying omptbx/tst.py -> /<>/.pybuild/cpython3_3.12/build/omptbx creating /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/generate_fonts_ucs_cpp.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst_ellipsoids.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/quadrics.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_scene.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/extract_opengl_specs.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/glu.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewer.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewer_example.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewers_images.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/images.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/generate_defines_bpl.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst_fonts.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/viewer_utils.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/gl_managed.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_cube.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/util.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/fonts.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/generate_functions_bpl.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst_viewer_utils.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_motion_on_tab.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_viewer_leapmotion.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/tst.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/wx_ellipsoids_test.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/gltbx copying gltbx/gl.py -> /<>/.pybuild/cpython3_3.12/build/gltbx creating /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/clashes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/model_vs_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/f_model_info.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/msa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/arrays.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/grow_density.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/pdb_distances.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/proq2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/resolve_resources.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/real_space_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/map_tools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/xmanip_tasks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/pdb_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/lattice.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/domains_from_pae.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/find_peaks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/xmanip.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/invariant_domain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx copying mmtbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx creating /<>/.pybuild/cpython3_3.12/build/serialtbx copying serialtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx creating /<>/.pybuild/cpython3_3.12/build/qttbx copying qttbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/qttbx copying qttbx/phil.py -> /<>/.pybuild/cpython3_3.12/build/qttbx creating /<>/.pybuild/cpython3_3.12/build/spotfinder copying spotfinder/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder copying spotfinder/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder copying spotfinder/exception.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder creating /<>/.pybuild/cpython3_3.12/build/fftw3tbx copying fftw3tbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fftw3tbx copying fftw3tbx/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/fftw3tbx copying fftw3tbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/fftw3tbx creating /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/heavy_atoms.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/app.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/segmentedctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/symmetry_dialog.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/listeditor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/process_control.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/sequence_view.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/b_plot.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/layout.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/mtz_dump.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/path_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/windows.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/metallicbutton.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/misc_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/errors.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/bitmaps.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/qstat_view.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/monitor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/icons.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/checklistctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/pdb_editor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/custom_restraints.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/adp_statistics.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/tables.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/wx4_compatibility.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/browser.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/info_panels.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/anomalous_scattering.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/ensemble_validation.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/polygon.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx copying wxtbx/polygon_db_viewer.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx creating /<>/.pybuild/cpython3_3.12/build/rstbx copying rstbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/rstbx copying rstbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx copying rstbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/rstbx creating /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/dmtbx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/french_wilson.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/crystal_orientation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/math_module.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/symmetry_search.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/r_free_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/translation_search.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/adptbx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/run_examples.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/anharmonic.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/euclidean_model_matching.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/statistics.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/multipolar.py -> /<>/.pybuild/cpython3_3.12/build/cctbx copying cctbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/cctbx creating /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/exercise_compression.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx copying cbflib_adaptbx/copy_files.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx creating /<>/.pybuild/cpython3_3.12/build/fast_linalg copying fast_linalg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fast_linalg creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/hybrid_times.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx copying boost_adaptbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx creating /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/simple_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/builders.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/pymol.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_editor.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/crystal_symmetry_from_any.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/format.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_converter.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/ranges.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/phases.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/table_one.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/wildcard.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/csv_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/map_tools.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/builders_depending_on_smtbx.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/cif_mtz_data_labels.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/data_plots.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/mtrix_biomt.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/logfiles.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/option_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/map_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/map_model_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/poscar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/extract_xtal_data.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/reflection_file_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/merging_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx copying iotbx/cli_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx creating /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx copying ccp4io_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx copying ccp4io_adaptbx/copy_files.py -> /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx copying ccp4io_adaptbx/tst.py -> /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx creating /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/conftest.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/development.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/smtbx copying smtbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/smtbx creating /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/log.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/cpp_function_name.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_mp_state.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_math_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_fully_buffered_timeout.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_python_code_parsing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/forward_compatibility.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/dlite.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/configure.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_run.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/simplexml.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/mpi4py.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/find_reference_cycles.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_mp_multicore.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/subprocess_with_fixes.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/objgraph.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_program_template.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/progress.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/containers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_object_oriented_patterns.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/complex_math.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/topological_sort.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/console_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/xmlrpc_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/wingide.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_containers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/subversion.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/try_hello_world_c.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/crossmingw.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/table_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_profile.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_thread_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_pickle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/math_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/runtime_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_binary_search.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/cluster.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/callbacks.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/xmlrpc_server_example.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_representation.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/object_oriented_patterns.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/pkg_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_easy_mp.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/pyframe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/clusterTests.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_dlite.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/pyplot.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/env_config.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/assert_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/cli.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/thread_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/str_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/file_clutter.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/smart_open.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_find_unused_imports.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_mp.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/code_analysis.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/easy_pickle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/option_parser.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_topological_sort.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/fastentrypoints.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/introspection.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_xmlrpc_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/load_env.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/clear_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/citations.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_runtime_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/metric_prefixes.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/start_print_trace.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_str_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_scheduling.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/tst_citations.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/python_code_parsing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/program_template.py -> /<>/.pybuild/cpython3_3.12/build/libtbx copying libtbx/binary_search.py -> /<>/.pybuild/cpython3_3.12/build/libtbx creating /<>/.pybuild/cpython3_3.12/build/simtbx copying simtbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/simtbx copying simtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx creating /<>/.pybuild/cpython3_3.12/build/fable copying fable/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/intrinsics.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/simple_compilation.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_read.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_equivalence.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/equivalence.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/cout.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_cout_compile.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/utils.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tokenization.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/tst_cout.py -> /<>/.pybuild/cpython3_3.12/build/fable copying fable/read.py -> /<>/.pybuild/cpython3_3.12/build/fable creating /<>/.pybuild/cpython3_3.12/build/cctbx_website copying cctbx_website/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website copying cctbx_website/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website copying cctbx_website/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website creating /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx copying annlib_adaptbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx copying annlib_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx creating /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/cma_es_interface.py -> /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cma_es copying cma_es/tst_cma_es.py -> /<>/.pybuild/cpython3_3.12/build/cma_es creating /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/run_tests.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/smoothing.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/restraints.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/cubicle_neighbors.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/minimizers.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/genetic_algorithm_with_mp.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/direct_search_simulated_annealing.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/r3_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/fftpack.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/golden_section_search.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/minpack.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/lbfgsb.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/simplex.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/regular_grid_on_unit_sphere.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/libtbx_refresh.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/cross_entropy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx copying scitbx/differential_evolution.py -> /<>/.pybuild/cpython3_3.12/build/scitbx creating /<>/.pybuild/cpython3_3.12/build/cudatbx creating /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft copying cudatbx/cufft/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft copying cudatbx/cufft/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft creating /<>/.pybuild/cpython3_3.12/build/cudatbx/math copying cudatbx/math/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/math creating /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering copying cudatbx/scattering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering copying cudatbx/scattering/tst_direct_summation.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering creating /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions copying cudatbx/math/special_functions/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions copying cudatbx/math/special_functions/tst_spherical_bessel_jn.py -> /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions creating /<>/.pybuild/cpython3_3.12/build/gltbx/command_line copying gltbx/command_line/try_imports.py -> /<>/.pybuild/cpython3_3.12/build/gltbx/command_line copying gltbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/gltbx/command_line creating /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment copying mmtbx/alignment/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment creating /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/fem.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/kick.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/fobs_minus_fobs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/composite_omit_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/map_model_cc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/mtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps copying mmtbx/maps/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/maps creating /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/pair_interaction.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_00.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_03.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_04.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_05.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction creating /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hpdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/bond_angle_registry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/nucleotides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/metal_coordination_library.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/histidines.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_base_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hydrogen_bonding.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_setup.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/LinkedResidues.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/sf4_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_esd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/altloc_weighting.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/density_dependent_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_svl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_omega_cdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_03.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/check_cdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rdl_database.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_hpdl.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mutli_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/testing_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library creating /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/sample_rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/all_his.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/rotamer_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues creating /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/output.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/tst_polygon_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/tst_gui.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon copying mmtbx/polygon/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon creating /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/ensemble_ordered_solvent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/map_to_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent copying mmtbx/solvent/ordered_solvent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent creating /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/super.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/development.aev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/perigee.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/matthews.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/dynamics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fix_rama_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_ions.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/suitename_old.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/flipbase.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/distance_difference.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/show_suspicious_residues.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/get_related_ensemble.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_vs_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_H_cl_app.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/altloc_remediate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/verify_mon_lib_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_to_structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rebuild_rotarama_cache.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/select_best_starting_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/evalurama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/sort_hetatms.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/prune_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fmodel_simple.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/real_space_diff_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/search_pdb_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_vs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fetch_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/compute_map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/extend_sidechains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/secondary_structure_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fix_rotamer_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mp_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/table_one.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cc_star.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/grow_density.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rama_z.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/analyze_static_disorder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ssm_rmsd_for_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/reduce2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rigid_bond_test.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rebuild_cablam_cache.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/find_peaks_holes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/emringer_score.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/maps.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/density_modification.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/real_space_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_comparison.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/probe2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/show_r_factors_by_shell.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/f000.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/tls_as_xyz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/reciprocal_space_arrays.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mtz2map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_box.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fobs_minus_fobs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/models_as_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/massage_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mask.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rank_scale_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/remove_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdb_atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ss_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mon_lib_cif_triage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/find_residue_in_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/ntc_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cdl_lookup.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/chiral_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/estimate_bijvoet_ratio.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate_puckers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/geometry_minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validate_waters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/molprobity.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate_suites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fab_elbow_angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fmodel.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/probescore_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_model_distances.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/kinemage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fest.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/secondary_structure_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cif_as_mtz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/analyze_peptides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/chains_as_models.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/refine_anomalous_substructure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/development_fem.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/hydrogenate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/maximum_entropy_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdb_view_ad_hoc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/fake_f_obs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/pdb_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_vs_sequence.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/quantum_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/find_tls_groups.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/monomer_library.comp_as_motif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/r_factor_statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rna_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/compare_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/model_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/prepare_pdb_deposition.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/barbed_wire_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/partial_omit_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/xmanip.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/tls.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/map_to_model_histogram.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/anneal_real_space.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/validation_summary.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/afitt_fd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/water_b_factors.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/cablam_training.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/arginine_geometry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/afitt.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/water_screen.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/simulate_low_res_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/comparama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/sisa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/tls_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/strip_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line copying mmtbx/command_line/apply_ncs_to_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model copying mmtbx/f_model/f_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model copying mmtbx/f_model/f_model_info.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model copying mmtbx/f_model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model creating /<>/.pybuild/cpython3_3.12/build/mmtbx/den copying mmtbx/den/refinement.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/den copying mmtbx/den/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/den copying mmtbx/den/plot_weights.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/den creating /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm14.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm12.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm15.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm10.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/decompose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/tls_as_xyz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm11.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/perm13.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/tools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/command_line.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/ladp.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls copying mmtbx/tls/optimise_amplitudes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/tls creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_examples.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_add_h_to_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_ringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_sampled_model_density.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_ccs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_no_cryst1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_find_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_mtz2map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_altloc_remediate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cc_star.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_reduce.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_sort_hetatms.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_rank_scale_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_statistics_output.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_model_vs_sequence.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_minimize_chain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_scattering_type_registry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_reduce_timeout.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_fd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_special_term_at_end.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_loop_closure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_model_vs_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_isomorphous_difference_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_table_one.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_map_type_parser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_dynamics_cli.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_clashes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_real_space_correlation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_superpose.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_refine_anomalous_substructure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_map_coeffs_simple.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_prune_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_command_line_input.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_geo_min_restraints_phil.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_alignment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_ligand_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_chain_comparison.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_adp_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_flipping_his.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_metal_link_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_multi_residue_class.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cis_trans_peptide_link.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_sequence_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/make_fake_anomalous_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fmodel_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_map_model_cc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_rigid_bond_test.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_ml_estimate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_apply_cif_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_msa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_probe.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_fix_rotamer_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_polder_box.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_add_arrows_on_plot.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_models_to_from_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_geometry_minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_maps_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_origin_ids.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_schrodinger_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_model_map.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_altloc_chain_break.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_validation_summary.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_anomalous_substructure.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression copying mmtbx/regression/tst_psi_phi_extraction.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression creating /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/backbone.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/tst_analyze_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/analyze_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder copying mmtbx/disorder/tst_backbone.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder creating /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_6.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/specialised_hydrogen_atoms.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/parameterization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/connectivity.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/build_hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/riding.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_0.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_7.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/validate_H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/find.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_9.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_validate_H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/reduce_hydrogen.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_8.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_minimize.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens creating /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification copying mmtbx/density_modification/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification copying mmtbx/density_modification/tst_density_modification.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/tst_em_rscc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/em_rolling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/tst_emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/em_rscc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/em_scoring.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer copying mmtbx/ringer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer creating /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_fit_rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_anomalous_scatterer_groups.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/refinement_flags.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/weights_params.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/adp_refinement.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_select_best_starting_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/print_statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/select_best_starting_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/targets.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_refinement_flags.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_real_space_simple.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/energy_monitor.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_misc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_group_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_group.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/group.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/geometry_minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/minimization_monitor.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/flip_peptide_side_chain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/anomalous_scatterer_groups.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tardy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/orca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/minimization_ncs_constraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/inspect_tardy_trajectory.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/minimization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/occupancies.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/wx_tardy_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement copying mmtbx/refinement/tst_occupancy_selections.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement creating /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_geo_file_parsing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/ramachandran.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/orca_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/reference.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_restraints_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/c_beta.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_c_beta_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/geo_file_parsing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qm_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/external.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_ramachandran.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/mopac_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qi_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/base_qm_manager.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/afitt.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints creating /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/tst_cartesian_dynamics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/ensemble_cd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/cartesian_dynamics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/constants.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/tst_sa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics copying mmtbx/dynamics/simulated_annealing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics creating /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/standard_geometry_cif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_web_services.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_web_services.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb copying mmtbx/wwpdb/tst_standard_geometry_cif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb creating /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model copying mmtbx/model/model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/model creating /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_res.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_math.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_fingerprints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_align.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam copying mmtbx/cablam/cablam_training.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/waters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/evalurama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/chain_comparison.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/sequence.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/graphics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/rama_z.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/comprehensive_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/ensembles.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/cbd_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mean_devs_PRO_phi_psi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/convert_lists.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mean_devs_others_phi_psi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/experimental.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/analyze_peptides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/model_properties.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/datasets.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/barbed_wire_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/fav_lists.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation copying mmtbx/validation/comparama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation creating /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/find_ss_from_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/regularize_from_pdb.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_insertion_codes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/proteins.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/nucleic_acids.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/secondary_structure_params.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/ss_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_segid.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure creating /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa copying mmtbx/sisa/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa creating /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/max_like_non_uniform.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/maxlik.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/tst_maxlik.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik copying mmtbx/max_lik/tst_max_lik.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik creating /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/matthews.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_massage_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/rip_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/relative_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_xtriage_twin_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/sir_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/outlier_plots.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_bayesian_estimator.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/make_param.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/absences.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/outlier_rejection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/absence_likelihood.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_sigmaa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/massage_twin_detwin_data.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_mean_f_rms_f.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_absences.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/remove_outliers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/relative_wilson.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/pre_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/fest.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/siras_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/sad_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/bayesian_estimator.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/random_omit.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/twin_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_outlier.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/thorough_outlier_test.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/basic_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/absolute_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/tst_xtriage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/ta_alpha_beta_calc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/sigmaa_estimation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/twmad_scale.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/pair_analyses.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/data_statistics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/mean_f_rms_f.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling copying mmtbx/scaling/fa_estimation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_geometries.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_symmetry_axis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/identify.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_mg.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_parameters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/build.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pickle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_validate_ca.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_validate_mg.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_approx_zn.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_ca_svm.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/environment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/geometry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_pick_k.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/halides.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions copying mmtbx/ions/tst_environment.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions creating /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors creating /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/InteractionGraph.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/Optimizers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/tst_mmtbx_reduce_ext.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce copying mmtbx/reduce/Movers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce creating /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components copying mmtbx/chemical_components/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components copying mmtbx/chemical_components/cif_parser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components copying mmtbx/chemical_components/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components creating /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_scaler.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/f_model_all_scales.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/kbu_refinery.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_flat_nonuniform.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_mosaic.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/mosaic.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/scaler.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_aniso_scaler.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent creating /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space copying mmtbx/real_space/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space copying mmtbx/real_space/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space creating /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/altloc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/clash.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/asa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/sphere_surface_sampling.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/topology.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/indexing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry copying mmtbx/geometry/shared_types.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry creating /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning copying mmtbx/twinning/twin_f_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning copying mmtbx/twinning/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning copying mmtbx/twinning/probabalistic_detwinning.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning creating /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr copying mmtbx/rsr/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr copying mmtbx/rsr/tst.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr creating /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage copying mmtbx/kinemage/validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage copying mmtbx/kinemage/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/cartesian_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_search.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/tncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_restraints_group_list.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ncs_params.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs copying mmtbx/ncs/ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs creating /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/grid2d.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/rotatable_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/tst_switch_rotamers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/fab_elbow_angle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils copying mmtbx/utils/ntc.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/utils creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ias copying mmtbx/ias/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ias copying mmtbx/ias/tst_ias.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ias creating /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/AtomTypes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/tst_mmtbx_probe_ext.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe copying mmtbx/probe/Helpers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/probe creating /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/suitename_old.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/evalurama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/emringer.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rama_z.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/reduce2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/validate_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/probe2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/pdb_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/cablam_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/mask.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ss_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ss_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/ntc_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/chiral_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/pdbtools.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate_puckers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/polder.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate_suites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/probescore_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/hydrogenate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/quantum_interface.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/process_predicted_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rna_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/prepare_pdb_deposition.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/barbed_wire_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/water_b_factors.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/arginine_geometry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs copying mmtbx/programs/comparama.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/programs creating /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_carbo_linking.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/hydrogen_restrictions.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_protein_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/server.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/cif_types.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/linking_setup.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_chiral_values.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_motif.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_coordination.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_triage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/idealized_aa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_neutron_distance.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/bondlength_defaults.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/linking_mixins.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_correct_hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_superpose_ideal.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_all_cif_files.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_paral_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/conformation_dependent_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_idealized_aa.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_metal_coordination.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/linking_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_chg.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/conv_v2_v3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/correct_hydrogen_geometries.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_dna_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/pdb_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/rotamer_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_linking.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_hand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/cif_triage.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_server.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_types.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rotamer_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library copying mmtbx/monomer_library/tst_deuterium_terminii.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/ready_set_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/tst_ready_set_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/xtal_screens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/chemistry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/ready_set_basics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/hierarchy_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/tst_xtal_screens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/electrons.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands copying mmtbx/ligands/rdkit_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands creating /<>/.pybuild/cpython3_3.12/build/mmtbx/masks copying mmtbx/masks/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/masks copying mmtbx/masks/tst_masks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/masks copying mmtbx/masks/tst_asu_mask.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/masks creating /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/make_library.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/merge_models.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/extend_sidechains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/minimize_chain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/cablam_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/tst_extend_sidechains_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/tst_extend_sidechains.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/tst_make_library.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building copying mmtbx/building/loop_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building creating /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitenamedefs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suiteninput.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/dualparse.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/mainchain.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitealyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/diangle.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suiteninit.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/transdent.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename copying mmtbx/suitename/suitenout.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename creating /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/tst_hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/skew_kurt_plot.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/data_filtering.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci copying mmtbx/nci/hbond.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/nci creating /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/sidechain_angles.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/nqh.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/graphics.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/n_dim_table.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/tst_rotamer_eval.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval_deprecated.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer copying mmtbx/rotamer/rotamer_eval.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_get_t_scheme.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_as_xyz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_refinement_fft.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_analysis.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_tors_ref_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_utils_merge_models.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_cart_ref_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_dedeuterate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_neutralize_scatterers.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ramachandran.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_merge.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_mtrix.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_get_vdw_radii.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model copying mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model creating /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search_flips.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs creating /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement creating /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/flipbase.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_selection.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/individual_sites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_6.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/explode_and_refine.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_rigid_body.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_weight.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/occupancy.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_small_molecule.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_6.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/adp.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1H.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_7.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residue.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_monitor.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_water.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_his.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/weight.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_flipbase.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residues.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space creating /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints creating /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/parallel_beta.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/regular_helix_definitions.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/how_to.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints copying mmtbx/cablam/fingerprints/antiparallel_beta.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/mp_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/kinemage_templates.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/probescore_ligand.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_do_flips_clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_validate_bonds.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_model_properties.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_4.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_waters.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_endtoend.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/run_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev_02.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_suitename.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_restraints.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_symmetry_SS.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_find_region_max_value.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rotalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_omegalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_keep_hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_5.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_arguments.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_01.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rna_validate.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_chiral_validation.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_experimental.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression creating /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/convert_from_text.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran creating /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_1.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_3.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_2.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/ss_idealization.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_io.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build creating /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_util.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_masks.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_ga.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_mtz.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_input.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_optimize.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize creating /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/dump_sites.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm creating /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/custom_gm.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/ccd.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/berkeley_ramalyze.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/starting_conformations.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/utils.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure creating /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands copying mmtbx/building/ligands/lifi.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands copying mmtbx/building/ligands/__init__.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands copying mmtbx/building/ligands/tst_00.py -> /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands creating /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/cspad.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/xtc.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/rayonix.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector copying serialtbx/detector/jungfrau.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector creating /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/construct_frame.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/energy_scan_notch_finder.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util copying serialtbx/util/time.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/util creating /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation copying serialtbx/mono_simulation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation copying serialtbx/mono_simulation/util.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation copying serialtbx/mono_simulation/max_like.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation creating /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/generic_detector.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/__init__.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/cspad_detector.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/metrology.py -> /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology creating /<>/.pybuild/cpython3_3.12/build/qttbx/viewers copying qttbx/viewers/__init__.py -> /<>/.pybuild/cpython3_3.12/build/qttbx/viewers copying qttbx/viewers/chimerax.py -> /<>/.pybuild/cpython3_3.12/build/qttbx/viewers creating /<>/.pybuild/cpython3_3.12/build/crys3d creating /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/HKLinfo.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/make_install_HKLviewer_ChimeraX.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/hklview.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/compare_datasets.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/visualize_r_factors.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/multiplicity_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/HKLviewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/model_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line copying crys3d/command_line/qttbx.view_structure.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/command_line creating /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/jsview_3d.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/hklviewer_gui.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/webbrowser_messenger_py3.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/display2.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/cmdlineframes.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/qt.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/hklview_frame.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/qt_chromium_check.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/default_user_preset_buttons.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/preset_buttons.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/webbrowser_messenger_py2.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/helpers.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/xtricorder_runner.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/HKLviewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer copying crys3d/hklviewer/xtriage_runner.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer creating /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx copying crys3d/qttbx/map_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx copying crys3d/qttbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx copying crys3d/qttbx/xray_structure_viewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx creating /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_hklinfo.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tst_websocket.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression copying crys3d/regression/tests_HKLviewer.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/regression creating /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/frames.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/view_2d.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/comparison.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview copying crys3d/hklview/view_3d.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklview creating /<>/.pybuild/cpython3_3.12/build/crys3d/programs copying crys3d/programs/HKLinfo.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/programs copying crys3d/programs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/programs creating /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src copying crys3d/hklviewer/chimeraX_wheel_src/tool.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src copying crys3d/hklviewer/chimeraX_wheel_src/__init__.py -> /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src creating /<>/.pybuild/cpython3_3.12/build/xfel creating /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/progress_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/simulate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/progress_support.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/split_pickles.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp copying xfel/xpp/isoform.py -> /<>/.pybuild/cpython3_3.12/build/xfel/xpp creating /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/simulate_partial_data.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/api.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/cluster_groups.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/cluster.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering copying xfel/clustering/singleframe.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering creating /<>/.pybuild/cpython3_3.12/build/xfel/cftbx copying xfel/cftbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx creating /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_xtc_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_circular_gain_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_congruence.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/make_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xtc_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/get_next_trial_id.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_mpi_submit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/frame_unpickler.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/print_pickle.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/subtract_background.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/drift.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_progress_bar.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/monitor_detectors.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_stream_to_pickle.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_congruence2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/upload_mtz.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/FEE_average_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_pbs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/trumpet_plots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/overlay_spectra.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/view_pixel_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/quadrants_cbf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_view.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_calibdir2cbfheader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/convert_gain_map_cbf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xes_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/striping.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xes_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_isoform.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_merge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_display_metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/histogram_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_generate_circular_gain_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_psana.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cctbx_integration_pickle_viewer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xtc_dump.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xfel_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_cspad_pinwheel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_cbfheader2slaccalib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cbf_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_optical2cbfheader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_parameters.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/find_highres_shots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/runs_sentinel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/mpi_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_simulate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/h5_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/frame_extractor.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_slaccalib2cbfheader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/show_spot_separation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/beamcenter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/jungfrau_metrics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/experiment_json_to_cbf_def.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/monitor_trials.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/xpp_progress_detail.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/smooth_spectrum.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_apply_metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/auto_submit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/quadrants.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/brehm_diederichs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_lsf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/detector_residuals.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/weather.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/experiment_manager.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_pickle2cbf.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/radial_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_detector_format_versions.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/stills_merge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_diff.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/plot_to_subpixel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/fee_calibration.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/launch_fxs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/make_mar_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/make_dials_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/calc_gain_ratio.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_index.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_pyana.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_detector_shifts.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/list_db_metadata.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cspad_cbf_metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/convert_gain_map.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/or_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/postrefine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/trial_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_plotcv.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/jobs_sentinel.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/experiment_residuals.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/recompute_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/fee_view.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/riso.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/metrology.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/cxi_xmerge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line copying xfel/command_line/filter_experiments_by_rmsd.py -> /<>/.pybuild/cpython3_3.12/build/xfel/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark10.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark0.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/panel_fitting.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark3.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/flatfile.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/quadrant.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology copying xfel/metrology/mark1.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology creating /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/drift.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/split_detector.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/mp.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/reflection_length.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/show_spot_separation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/dials_file_matcher.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/cctbx_xfel_installer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/weather.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/dials_pickle_reader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/kapton_2019_correction_frame_frame_plugin.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util copying xfel/util/image_pickle_locator.py -> /<>/.pybuild/cpython3_3.12/build/xfel/util creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_updated_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/completeness_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/strong_zulu.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/trumpet_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/average_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_hybrid_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/merging_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/cxi_cc.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/display_powder_arcs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/postrefinement_legacy_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/spectra_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/util.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/correction_vector_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/display_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/integrate_image_api.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi copying xfel/cxi/data_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi creating /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/read_geom.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/agipd_cxigeom2nexus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/agipd_from_defs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel copying xfel/euxfel/write_composite_image.py -> /<>/.pybuild/cpython3_3.12/build/xfel/euxfel creating /<>/.pybuild/cpython3_3.12/build/xfel/amo copying xfel/amo/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo creating /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos copying xfel/vonHamos/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos copying xfel/vonHamos/test_3_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos copying xfel/vonHamos/fit_3_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos creating /<>/.pybuild/cpython3_3.12/build/xfel/ui copying xfel/ui/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui copying xfel/ui/phil_patch.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui creating /<>/.pybuild/cpython3_3.12/build/xfel/swissfel copying xfel/swissfel/jf16m_cxigeom2nexus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/swissfel copying xfel/swissfel/sync_jf16m_geometry.py -> /<>/.pybuild/cpython3_3.12/build/xfel/swissfel copying xfel/swissfel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/swissfel creating /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation copying xfel/mono_simulation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation copying xfel/mono_simulation/mono_treatment.py -> /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation copying xfel/mono_simulation/max_like_pos_neg.py -> /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation creating /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/solve_orientation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/write_orientation_arrows.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/powder_util.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell copying xfel/small_cell/small_cell.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell creating /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/graph.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/multiproc_temp_parame_opt.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/parameter_optimizer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc copying xfel/graph_proc/components.py -> /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc creating /<>/.pybuild/cpython3_3.12/build/xfel/pal copying xfel/pal/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/pal copying xfel/pal/jf4m_geom2nexus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/pal creating /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/phil_validation.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/general_fcalc.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/absorption.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/predictions_to_edges.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging copying xfel/merging/refine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging creating /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api copying xfel/lcls_api/psana_cctbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api copying xfel/lcls_api/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api copying xfel/lcls_api/exercise_api.py -> /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api creating /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_per_frame_wilson.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_42.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_intensity_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_unit_cell.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line copying xfel/clustering/command_line/cluster_visualise_orientations.py -> /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector copying xfel/cftbx/detector/cspad_cbf_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector copying xfel/cftbx/detector/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector copying xfel/cftbx/detector/metrology2phil.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector creating /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale copying xfel/metrology/legacy_scale/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/test_cluster.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/Cluster.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/SingleFrame.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering copying xfel/cxi/clustering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/status_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/trials_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx copying xfel/cxi/gfx/wx_detectors.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line copying xfel/cxi/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line copying xfel/cxi/command_line/einsle.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_radial_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/display_calib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_pulnix_dump.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_event_info.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_hdf5.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_dump_bitmap.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/xes_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_view.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/xes_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_illumination_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_hitfind.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/histogram_finalise.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_dump.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_spectrum_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_daq_status.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_event_code.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/xes_faster_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_mar.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/hitfinder_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_param.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_average.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_ledge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/pixel_histograms.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/cspad_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/average_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_image_dict.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/parse_calib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/common_mode.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/rayonix_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana copying xfel/cxi/cspad_ana/mod_xes.py -> /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana creating /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_index.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/fxs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_bg.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_mask.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_launch.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_calib.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/mpi_fxs_c2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/pnccd_hit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana copying xfel/amo/pnccd_ana/pnccd_tbx.py -> /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/spotfinder_scraper.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_init.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/spotfinder_plotter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_plotter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/run_stats_plotter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_controls.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/xfel_gui_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/tooltips.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/timeit.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components copying xfel/ui/components/submission_tracker.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/components creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/run.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/rungroup.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/experiment.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/frame_logging.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/job.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/dxtbx_db.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/trial.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/tag.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/merging_log_scraper.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/dataset.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/xfel_db.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db copying xfel/ui/db/task.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_run_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_uc_cloud_from_experiments.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_isoform_cloud.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_uc_cloud.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_run_stats_in_gui.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/xfel_gui_launch.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_spotfinder_stats_in_gui.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/print_run_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_reflection_stats.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/ui_server.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/plot_run_stats_from_experiments.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line copying xfel/ui/command_line/get_hit_timestamps.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs copying xfel/ui/db/cfgs/shifter_templates.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs copying xfel/ui/db/cfgs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs creating /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/small_cell_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/xfel_small_cell_process.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/cake_plot_prep.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/candidate_cells.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/small_cell_index.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/powder_from_spots.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line copying xfel/small_cell/command_line/cake_plot.py -> /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line copying xfel/merging/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line copying xfel/merging/command_line/mpi_integrate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line copying xfel/merging/command_line/merge.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/report copying xfel/merging/report/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/report creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/reflection_table_utils.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/worker.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/mpi_helper.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application copying xfel/merging/application/mpi_logger.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/model copying xfel/merging/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/model creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms copying xfel/merging/algorithms/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database_fs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database_flex.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database copying xfel/merging/database/merging_database_sqlite3.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/database creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables copying xfel/merging/report/tables/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs copying xfel/merging/report/graphs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge copying xfel/merging/application/merge/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge copying xfel/merging/application/merge/merger.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge copying xfel/merging/application/merge/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group copying xfel/merging/application/group/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group copying xfel/merging/application/group/group_reflections.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group copying xfel/merging/application/group/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus copying xfel/merging/application/lunus/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus copying xfel/merging/application/lunus/lunus.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus copying xfel/merging/application/lunus/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale copying xfel/merging/application/scale/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale copying xfel/merging/application/scale/experiment_scaler.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale copying xfel/merging/application/scale/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/file_loader.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/file_load_calculator.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/file_lister.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input copying xfel/merging/application/input/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/unit_cell_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/experiment_resolution_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/beam_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/intensity_histogram.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/intensity_resolution_statistics.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics copying xfel/merging/application/statistics/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil copying xfel/merging/application/phil/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil copying xfel/merging/application/phil/phil.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance copying xfel/merging/application/balance/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance copying xfel/merging/application/balance/load_balancer.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance copying xfel/merging/application/balance/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate copying xfel/merging/application/integrate/integrate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate copying xfel/merging/application/integrate/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate copying xfel/merging/application/integrate/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/resolution_binner.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/crystal_model.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model copying xfel/merging/application/model/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation copying xfel/merging/application/validation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation copying xfel/merging/application/validation/application.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output copying xfel/merging/application/output/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output copying xfel/merging/application/output/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/reindex_to_abc.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/token_passing_left_right.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/df_cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/aux_cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/polarization.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/reindex_cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/cosym_tranch_align.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/compare_results.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/reindex_to_reference.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/cosym.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify copying xfel/merging/application/modify/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/error_modifier_sr.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/error_modifier_ha14.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/error_modifier_ev11.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors copying xfel/merging/application/errors/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils copying xfel/merging/application/utils/memory_usage.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils copying xfel/merging/application/utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils copying xfel/merging/application/utils/data_counter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/reflection_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/experiment_filter.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter copying xfel/merging/application/filter/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata copying xfel/merging/application/tdata/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata copying xfel/merging/application/tdata/cell_listing.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata copying xfel/merging/application/tdata/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/postrefinement_rs2.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/postrefinement_rs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine copying xfel/merging/application/postrefine/factory.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics copying xfel/merging/algorithms/statistics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/error_modeler_base.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/reduced_chi_squared.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_refine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_refine_levmar.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_propagate.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model copying xfel/merging/algorithms/error_model/errors_from_residuals.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model creating /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine copying xfel/merging/algorithms/postrefine/__init__.py -> /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine creating /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache_dials.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_read_file.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache_bcsb.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/adsc_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/apache_utils.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/bcsb_client_example.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/multipart_encoder.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/thin_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/spotfinder_server_read_file.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/pilatus_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/general_client_example.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/specific_client_example.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/spotfinder_server_client_push.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_is_alive.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/servers creating /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction copying spotfinder/diffraction/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction copying spotfinder/diffraction/imagefiles.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction copying spotfinder/diffraction/geometry.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction creating /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family copying spotfinder/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family copying spotfinder/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family creating /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/mp_spotfinder_server_read_file.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/signal_strength.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/sweep_strength.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/image_viewer.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/thin_client.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line copying spotfinder/command_line/find_active_area.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line creating /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support copying spotfinder/math_support/sphere_formulae.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support copying spotfinder/math_support/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support creating /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox copying spotfinder/core_toolbox/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox copying spotfinder/core_toolbox/close_spots_detail.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox creating /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/signal_strength.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/stats_distl.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/image_viewer.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/wrappers.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications copying spotfinder/applications/practical_heuristics.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications creating /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/practical_heuristics.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox creating /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_phil.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/correction_vector_plot.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_run3.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel creating /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/method2_resolution.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice2.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice_nztt.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/spotreporter.py -> /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx creating /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/xtriage.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/inspect_r_free_flags.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/b_plot.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/wxpython.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/pdb_statistics.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/plot_anomalous_scattering.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/plan_sad_experiment.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/pdb_editor.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/show_file_info.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/anomalous_differences_histogram.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line copying wxtbx/command_line/loggraph.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/wxtbx/reports copying wxtbx/reports/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/reports copying wxtbx/reports/blast.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/reports copying wxtbx/reports/pdb_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/reports creating /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/misc_ctrls.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/boolctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/tree.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/tribool.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/strings.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/unit_cell.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/path.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/strctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/ints.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/floatctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/array_label.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/symop.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/numbers.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/text_base.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/floats.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/simple_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/choice_multi.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/choice.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/intctrl.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls copying wxtbx/phil_controls/space_group.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls creating /<>/.pybuild/cpython3_3.12/build/wxtbx/plots copying wxtbx/plots/emringer.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/plots copying wxtbx/plots/__init__.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/plots copying wxtbx/plots/molprobity.py -> /<>/.pybuild/cpython3_3.12/build/wxtbx/plots creating /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass copying rstbx/bandpass/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass copying rstbx/bandpass/simulated_annealing.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass creating /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots copying rstbx/outlier_spots/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots copying rstbx/outlier_spots/fit_distribution.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots creating /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/tst_coordinate_frame_converter.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_converter.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_helpers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx creating /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/tst_partial_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/tst_ewald_sphere.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction copying rstbx/diffraction/tst_predict.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction creating /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/controls.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/spotfinder_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/drivers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/spotfinder_wrap.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/processing.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/calibration_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/pixels3d.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/indexing.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/calibration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/dataset.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/results_base.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/tst.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer copying rstbx/viewer/frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/viewer creating /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core copying rstbx/dials_core/integration_core.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core copying rstbx/dials_core/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core creating /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/ersatz_misset.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2a.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions_idx.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/compare_mosflm_xds.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx copying rstbx/bpcx/uc1_2_validate.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx creating /<>/.pybuild/cpython3_3.12/build/rstbx/array_family copying rstbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/array_family copying rstbx/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/array_family creating /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/slip_viewer.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.explore_completeness.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/viewer.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/example_viewer.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.solver.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.create.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line copying rstbx/command_line/simage.wx_display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/command_line creating /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/sim_pdf.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/constants.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/tst_xfel1_simple.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation copying rstbx/simulation/sim_utils.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simulation creating /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/uc_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/ring_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/tile_generation.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/pyslip.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/score_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/calibration_frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/slip_display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/slip_viewer_image_factory.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/example_frame_plugin_hidden.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer copying rstbx/slip_viewer/frame.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer creating /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/phil_preferences.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/preferences.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil copying rstbx/phil/scope.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/phil creating /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry copying rstbx/symmetry/sgtbx_adaptor.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry copying rstbx/symmetry/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry copying rstbx/symmetry/subgroup.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry creating /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/spot_shape.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/speckfinder.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/stats_index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/pixel_spread.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons copying rstbx/new_horizons/oscillation_shots.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons creating /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support copying rstbx/sublattice_support/tst_sublattice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support copying rstbx/sublattice_support/change_basis.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support copying rstbx/sublattice_support/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support creating /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/tst_auto_monoscan.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/tst_dataset1.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing copying rstbx/indexing/do_index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing creating /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/outlier_detection.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/sampling.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/nearest_neighbor.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/test_dps.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/force_cell.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/lattice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/outlier_procedure.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/basis_choice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api copying rstbx/indexing_api/tools.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api creating /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/slip_helpers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/dual_resolution_helpers.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps copying rstbx/apps/spot_markup.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps creating /<>/.pybuild/cpython3_3.12/build/rstbx/detectors copying rstbx/detectors/silicon.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/detectors copying rstbx/detectors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/detectors creating /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/solver.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/explore_completeness.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/integrate_crude.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/create.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/run_labelit_index.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/refine_uc_cr.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/wx_display.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/tst.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage copying rstbx/simage/run_spotfinder.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/simage creating /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/tst_iotbx_converter.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/constrainment.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/sampling.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/zuoreduction.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/cell_assessment.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/lepage.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core copying rstbx/dps_core/basis_choice.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core creating /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_utils_clustering.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg creating /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/instrument_specifics.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/tst_detector_model.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/detector.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model creating /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/g_gradients.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/parameter_reduction.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints creating /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/dials_refinement_preceding_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/stills_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/__init__.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/util.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills copying rstbx/apps/stills/simple_integration.py -> /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills creating /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_resolution_from_map_and_model.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_mask.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/refine_scales_errors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_interpolation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_interpolation_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_docking.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/map_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_ccp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_loft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_get_percentile_cutoffs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/real_space_refinement_simple.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/mask.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_target_and_gradients.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_peak_volume_estimate.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_real_space_refinement_simple.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_asymmetric_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/mem.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_bcr.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_map_peak_3d_as_2d.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/auto_sharpen.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/box.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/segment_and_split_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/refine_sharpening.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/resolution_from_map_and_model.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/minimization.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx copying cctbx/maptbx/tst_atom_curves.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/emma.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/io_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/dispatcher.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/change_basis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/replay.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/frac_cart.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/phase_o_phrenia.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/shelx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/iotbx_cif_validate.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/change_hand.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/browse_settings.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/explore_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/libtbx_help.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/multiple_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/change_setting.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/all_axes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/wyckoff.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/structure_factors_pdb.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web copying cctbx/web/cgi_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web creating /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/coordination_sequences.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/find_best_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/distance_based_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/burzlaff_zimmermann_dewolff.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/direct_space_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/tst_distance_based_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/super_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/reindex.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/tst_super_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal copying cctbx/crystal/close_packing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/crystal creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/observation_types.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/target_functors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/structure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/scatterer.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/minimization.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray copying cctbx/xray/weighting_schemes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray creating /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators copying cctbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators copying cctbx/source_generators/flex_fwd_h.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/van_der_waals_radii.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/icsd_radii.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/e_scattering.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/neutron.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/distance_based_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/covalent_radii.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/read_custom_scattering_dict.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/fp_fdp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/chemical_elements.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/tiny_pse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/formula.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/sasaki.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/henke.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/wavelengths.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/gaussian_fit.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx copying cctbx/eltbx/attenuation_coefficient.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/gruber_1973.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/krivy_gruber_1976.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/reduction_base.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx copying cctbx/uctbx/gruber_1973_table_1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/array_family copying cctbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/array_family copying cctbx/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/array_family creating /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/samosa_join.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/cod_select_and_pickle.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/precession_view.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/version.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/find_reticular_twin_laws.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/form_factor_query.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/samosa_scale.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/cctbx_test_nightly.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/brehm_diederichs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/diffuse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/space_group_info.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/wavelength_units.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/structure_factor_timings.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/xray_structure.show.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/eltbx.show_fp_fdp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/auto_sharpen.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/euclidean_model_matching.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line copying cctbx/command_line/segment_and_split_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/command_line creating /<>/.pybuild/cpython3_3.12/build/cctbx/neutron copying cctbx/neutron/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/neutron creating /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_weighting_schemes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sampled_model_density.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_show_cosets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_wilson_plot.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_expand_to_p1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_krivy_gruber.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_maptbx_structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_math_module.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_map_weights_for_symmetry_summation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_find_best_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_prepare_map_for_docking.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_diffuse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_wavelength_units.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_geometry_restraints_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_data_manipulation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_direct_scaling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_special_op_simplifier.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_mem_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_fast_nv1995.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_fourier_transform_real_part_at_x.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_pointgroup_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_r_free_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_triplet_generator.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_fft_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_loc_res.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_adp_aniso_restraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_emma.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sphericity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_denominators.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_web_change_basis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_minimization.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_create_models_or_maps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_geometry_restraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_reciprocal_space_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_lookup_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_minimization_failure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_reflection_statistics.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_grm_pickling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_maptbx_mask.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_mem.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_fast_gradients.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_tidy_pickling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_map_is_periodic.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_harker.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_twin_target.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sf_low_res_accuracy.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_f_model.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_grouped_data.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_grm_modifications.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_coordination_sequences.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_geometry_restraints_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_refine_xray_curvs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_change_basis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_french_wilson.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_crystal.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_pair_asu_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_maptbx_box.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_adp_constraints_cartesian.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_direct_space_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_xray_target_functors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_fcalc_fft_stability.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_statistics_graphs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_sgtbx_site_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_crystal_close_packing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_merge_equivalents.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_adp_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_crystal_asu_clusters.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_double_step_filtration.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_amplitude_normalisation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_miller_statistics.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression copying cctbx/regression/tst_connectivity_allsym.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/regression creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/quartz_structure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/reduced_cell_two_folds.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/random_puckers.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_phase_o_phrenia.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/space_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/find_distances_using_cpp_objects.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/convert_ccp4_symop_lib.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/neutron_structure_factors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/steve_collins.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/g_exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/view_fft_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/miller_transform.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/hirshfeld_test.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_space_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/location_part.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/site_symmetry_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/getting_started.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/phase_o_phrenia.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/maximum_subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/adp_symmetry_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/map_skewness.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_3.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/random_f_calc.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/trigonal_r_vs_tetragonal_i.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/space_group_matrices.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/ccp4_map.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives_4.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/cr2o3_consistency_checks.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/f_model_example.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/analyze_adp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/change_hand_p31.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/lebedev_2005_perturbation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/miller_common_sets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/structure_factor_derivatives_3.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/sub_group_graph.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/list_non_principal_continuous_shifts.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/all_axes.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/symops_530.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/find_sys_abs_equiv_space_groups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/g_exp_i_partial_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/fft_map_electron_density_around_atom.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_4.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/unit_cell_minimizers.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/unit_cell_refinement.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/le_page_1982_vs_lebedev_2005.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/site_symmetry_constraints.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_exp_i_alpha_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/cr2o3_primitive_cell.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples creating /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/display.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/tst_map_to_asu_isym.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/reindexing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller copying cctbx/miller/tst_reindexing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/miller creating /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/auto_linking_types.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_motif.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/flags.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/base_geometry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_proxy_registry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_angle_derivs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/nonbonded_overlaps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/process_nonbonded_proxies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/linking_class.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/distance_least_squares.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/energies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints copying cctbx/geometry_restraints/standard_cif_links.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints creating /<>/.pybuild/cpython3_3.12/build/cctbx/covariance copying cctbx/covariance/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/covariance creating /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/bravais_types.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/subgroups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/harker.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/reticular_pg_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/cosets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/sys_abs_equiv.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/sub_lattice_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/reticular_twin_laws.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/rational_matrices_point_groups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/show_cosets.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/symbol_confidence.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/plane_groups.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/pointgroup_tools.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx copying cctbx/sgtbx/literal_description.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/geometry copying cctbx/geometry/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/geometry creating /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/flags.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints copying cctbx/adp_restraints/energies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints creating /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/bfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/cod_select_and_pickle.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/cif_refine.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/eval_iso_vs_refined.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/dev.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/pdb_dev.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/tst_dev.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/tst_bfgs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/tardy_adaptor.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz copying cctbx/omz/cod_refine.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/omz creating /<>/.pybuild/cpython3_3.12/build/cctbx/merging copying cctbx/merging/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/merging copying cctbx/merging/brehm_diederichs.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/merging creating /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/fmt_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/run_shelx76.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/tst_cns_hl.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/space_group_option_parser.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/structure_factor_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/github.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/run_shelx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/cns_density_modification.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/tst_cns_epsilon.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/make_settings.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/random_structure.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/make_cns_input.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/debug_utils.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/electron_density_sampling.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/direct_or_fft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/create_models_or_maps.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development copying cctbx/development/approx_amplitude_vs_resolution.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/development creating /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol copying cctbx/macro_mol/rotation_parameters.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol copying cctbx/macro_mol/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol creating /<>/.pybuild/cpython3_3.12/build/cctbx/masks copying cctbx/masks/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/masks creating /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/bcr.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr creating /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/guide_to_notation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_index.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/web_links.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jvx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/global_counters.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_fft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_direct.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradient_flags.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_base.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/misc.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_fft.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/r1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/tst_r1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets copying cctbx/xray/targets/tst_shelxl_wght_ls.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets creating /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations copying cctbx/xray/observations/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations copying cctbx/xray/observations/tst_observations.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations creating /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_henke_cpp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx creating /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_section61_io.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_cross_validation.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/hydrogen_plots.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/combine_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/format_gaussian_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_approx.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_kissel.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/rez_rez_grant.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_io.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/e_scattering_plots.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_fits.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development creating /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering copying cctbx/eltbx/xray_scattering/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering creating /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell copying cctbx/uctbx/determine_unit_cell/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/site_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_derivatives.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/data_utilities.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/test1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/sigma_correction.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/tst_permutations.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/test_levenberg_sparse.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/task4.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/data_subset.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/show_results.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging copying cctbx/examples/merging/test_cc_half.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging creating /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/scale.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/join.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa creating /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/short_cuts.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/facet_analysis.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/cut_plane.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/check_redundancies.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/reference_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu creating /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto creating /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/dump.py -> /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/std_pair.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/rational.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/optional.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/tuple.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost copying boost_adaptbx/boost/python.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/gcd.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/divide_by_zero.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/inexact.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/int_overflow.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/segmentation_fault.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_environ_usage.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_platform_info.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/double_overflow.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line copying boost_adaptbx/command_line/lcm.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line creating /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/graph_structure_comparison.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/utility.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/min_cut_max_flow.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/minimum_cut_enumerate.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/__init__.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/breadth_first_search.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/metric.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/connected_component_algorithm.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/maximum_clique.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph copying boost_adaptbx/graph/clustering_algorithm.py -> /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph creating /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/builders.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/validation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/restraints.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/crystal_symmetry_from_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/errors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/cod_tools.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/geometry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/citations.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/model.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif copying iotbx/cif/restraint_file_merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cif creating /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_unmerged.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_extract_from_symmetry_lib.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/extract_from_symmetry_lib.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/crystal_symmetry_from_mtz.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_dano.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz copying iotbx/mtz/tst_miller_dict.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mtz creating /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.join_fragment_files.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns.reflection_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/shelx.dump_as_python.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/emma.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_file_editor.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_as_fasta.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/crystal_symmetry_from_any.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns.sdb_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/csv_as_mtz.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/r_free_flags_accumulation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/french_wilson.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_file_converter.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/get_pubmed_citation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif.as_miller_arrays.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/biomt_reconstruction.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/blast_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/patterson_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/symmetry_search.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/r_free_flags_completion_simple.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif_as_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.print_sequence.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/mtz.dump.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/sort_atoms.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.insert_scale_records.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_split_models.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/flip_symmetric_amino_acids.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/mtz_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif.validate.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/dano_as_amplitudes.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_labels_comparison.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/shelx.as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns.transfer_crystal_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/split_data_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/shelx.as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/mtrix_reconstruction.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/detector_image_as_png.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/show_systematic_absences.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/explore_metric_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/show_distances.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_show_connectivity.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cns_as_mtz.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_add_conformations.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/build_phil_cache.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reflection_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/r_free_flags_as_cns.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cif.as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/reindex.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.superpose_atoms_by_name.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.box_around_molecule.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/xplor.map.show_summary.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/dtrek.to_cns.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/unique_with_biomt.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_labels_diff.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.superpose_centers_of_mass.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/distance_least_squares.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/cbf_read.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_remediator.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/isomorphous_difference_patterson.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/poscar_as_xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/simple_map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb.b_factor_stats.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/pdb_get_citation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/effective_resolution.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/merging_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line copying iotbx/command_line/export_scalepack_unmerged.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/command_line creating /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/miller_array.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/sdb_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/tst_cns.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/space_group_symbols.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/pdb_remarks.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/crystal_symmetry_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/index_fobs_sigma_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/crystal_symmetry_from_sdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/reflection_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/crystal_symmetry_from_inp.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns copying iotbx/cns/sdb_writer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/cns creating /<>/.pybuild/cpython3_3.12/build/iotbx/kriber copying iotbx/kriber/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/kriber copying iotbx/kriber/tst_strudat.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/kriber copying iotbx/kriber/strudat.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/kriber creating /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_examples.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_miller_sort_asu.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_generate_n_char_string.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_xray_scale.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_data_plots.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_selected_hierarchy_flip.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_atom_selections_10k.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_3.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_manager_wrapping.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_all_chain_ids.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_box_around_molecule.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_merging_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_bioinformatics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_1.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mmcif_segids.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_show_systematic_absences.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_4.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reindex.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_group_rounding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_patterson.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_as_fasta.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_link_records.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_split_models.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_statistics.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_poscar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_csv_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_4.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_cif_inputs.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_tools.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_cif_as_pdb_1atom.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_extract_xtal_data.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_3.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_data_manager.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_copy_select.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_crystal_symmetry_from_any.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_fetch.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_split_data_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_lattice_symmetry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdbx_mmcif_tutorial.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mtz_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_pdb_v3.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_pdb_as_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mmcif_to_from_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_restraints_merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_file_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_occupancies_rounding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_add_conformations.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_map_model_manager_call_consistency.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_phases.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_mmcif_multimodel.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_export_scalepack_unmerged.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_hierarchy_id_str.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_simple_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_file_editor.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_reflection_file_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_wildcard.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_simple_map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_sort_atoms.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_cli_parser.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression copying iotbx/regression/tst_cif_1.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression creating /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_symmetry_copies.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/mtz_free_flipper.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_to_map_simple.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/prepare_model_for_rsr.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/direct_methods_light.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdbx_mmcif_tutorial.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/libtbx_phil_examples.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_split_chains.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_tardy_conf_sampling_simple.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/tst_mtz_free_flipper.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/recalculate_phenix_refine_r_factors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_shake.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/mtz_convert_free_to_work.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples copying iotbx/examples/pdb_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/examples creating /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile copying iotbx/mrcfile/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile copying iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile creating /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map copying iotbx/ccp4_map/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map copying iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map copying iotbx/ccp4_map/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map creating /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/ext.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/tst_xplormap.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/crystal_symmetry_from_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor copying iotbx/xplor/map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xplor creating /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof copying iotbx/fullprof/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof copying iotbx/fullprof/read_pcr.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof copying iotbx/fullprof/write_pcr.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof creating /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/cif_conversions.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/reflections.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/import_data_and_flags.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools copying iotbx/gui_tools/models.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools creating /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/lexer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/write_ins.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_writer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tokens.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/fcf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/parsers.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/hklf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/errors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_hklf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_fvar_encoding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/tst_lex_parse_build.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/crystal_symmetry_from_ins.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/fvar_encoding.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx copying iotbx/shelx/writer.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/shelx creating /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/xds_inp.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/blank_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/xds_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/xparm.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/read_ascii.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/crystal_symmetry_from_hkl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/correction.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/spot_xds.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/integrate_hkl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/gain_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds copying iotbx/xds/geometry.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/xds creating /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6 copying iotbx/dsn6/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6 copying iotbx/dsn6/tst.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6 creating /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/tst_merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/no_merge_original_index.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/tst_no_merge_original_index.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/crystal_symmetry_from_hkl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/merge.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack copying iotbx/scalepack/space_group_dictionary.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack creating /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint copying iotbx/PrettyPrint/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint copying iotbx/PrettyPrint/tables.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint creating /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/dtrek_symmetry_dict.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/reflnlist_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek copying iotbx/dtrek/crystal_symmetry_from_ref.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek creating /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/test_raxis2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_debug_write.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/raxis_nonsquare.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/marIP.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/generic_detector.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/macscience.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/noir.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/test_mar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/active_area_filter.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/cspad_detector_formats.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/beam_center_convention.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/hamamatsu.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/dtrek.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/eiger.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/npy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/adsc_minicbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/bruker.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_detectors.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/raxisbase.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_py_cbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/image_from_http_request.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/adsc_module.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_cbf_comp_read_meth.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/detectorbase.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/saturn.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/pilatus_minicbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/adsc.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/tst_adsc.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/url_support.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/mar.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/eiger_minicbf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/pilatus_slice.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/raxis.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors copying iotbx/detectors/edf.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors creating /<>/.pybuild/cpython3_3.12/build/iotbx/ncs copying iotbx/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/ncs creating /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/split_data_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/unique_with_biomt.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs copying iotbx/programs/box_around_molecule.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/programs creating /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/real_map.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/sequence.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/ncs_spec.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/map_coefficients.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/common.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/miller_array.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/phil.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/model.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager copying iotbx/data_manager/restraint.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager creating /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_mmcif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/records.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/experiment_type.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/rna_dna_detection.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy_atom_sort.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_atom_name_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/remark_3_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/nucleic_acid_codes.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_atom_selection_string.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/hybrid_36.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/remark_290_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/modified_aa_names.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/modified_rna_dna_names.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/aa_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_rna_dna_atom_names.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/pdbe.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/pdb_v3_cif_conversion.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/amino_acid_codes.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/mmcif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/remark_2_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_secondary_structure_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_read_mtrix_records_from_cif.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/secondary_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/atom_name_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/rcsb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_secondary_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/misc_records_output.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy_2.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/crystal_symmetry_from_pdb.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/download.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/xray_structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/tst_tls.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/cryst1_interpretation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/extract_rfactors_resolutions_sigma.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/utils.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/atom_selection.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/web_service_api.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb copying iotbx/pdb/fetch.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb creating /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/alignment_as_hsearch.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/local_blast.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/ncbi_blast_xml.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/pubmed.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/ebi_wu_blast_xml.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/homologues.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/xmlbuild.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/structure.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics copying iotbx/bioinformatics/pdb_info.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics creating /<>/.pybuild/cpython3_3.12/build/iotbx/solve copying iotbx/solve/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/solve copying iotbx/solve/fpfm_reader.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/solve copying iotbx/solve/crystal_symmetry_from_inp.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/solve creating /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_ligs.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_reordered_chains.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_user_selections.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_without_validation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs creating /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util copying iotbx/detectors/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util copying iotbx/detectors/util/filters.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util creating /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/camera_convention.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/config_detector.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/endstation_max_iv_trial.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/endstation.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context copying iotbx/detectors/context/spot_xy_convention.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context creating /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation copying iotbx/pdb/remediation/remediator.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation copying iotbx/pdb/remediation/__init__.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation copying iotbx/pdb/remediation/tst_remediator.py -> /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation creating /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators copying smtbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators copying smtbx/source_generators/flex_fwd_h.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/smtbx/array_family copying smtbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/array_family creating /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/benchmark_refinement.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/masks.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/absolute_structure.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/anom_refine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line copying smtbx/command_line/refine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/smtbx/regression copying smtbx/regression/tst_commandline_anomrefine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression copying smtbx/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression copying smtbx/regression/tst_commandline_refine.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement copying smtbx/refinement/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement copying smtbx/refinement/weighting_schemes.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement copying smtbx/refinement/least_squares.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement creating /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure copying smtbx/absolute_structure/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure creating /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio copying smtbx/ab_initio/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio copying smtbx/ab_initio/charge_flipping.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio creating /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors copying smtbx/structure_factors/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors creating /<>/.pybuild/cpython3_3.12/build/smtbx/stl copying smtbx/stl/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/stl copying smtbx/stl/map.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/stl creating /<>/.pybuild/cpython3_3.12/build/smtbx/masks copying smtbx/masks/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/masks creating /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data copying smtbx/regression/test_data/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/all.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/fpfdp.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/occupancy.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/adp.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/site.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints copying smtbx/refinement/constraints/rigid.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints copying smtbx/refinement/restraints/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints copying smtbx/refinement/restraints/adp_restraints.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints copying smtbx/refinement/restraints/origin_fixing_restraints.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_occupancies.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_constrained_structure.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_disorder.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_reparametrisation.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_direction.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_same_group.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/test_rigid.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests creating /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/all.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/hydrogens.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical creating /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_ab_initio_ext.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_charge_flipping.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests creating /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct copying smtbx/structure_factors/direct/__init__.py -> /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct creating /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/sge_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/communication.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/pbs_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling_helpers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/generic.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/lsf.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/looping.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/tst.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/remote.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils creating /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/wait_for_file.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/sphinx_build.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_all_on_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/install.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/seconds_since_the_epoch.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_include_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_unused_imports_crude.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_numeric_version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_reserved_names.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/run_tests_parallel.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_windows_exe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/nequal.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/printenv.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_unused_imports.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/git_avoid_merges.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/remote_processing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/clean_clutter.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_clutter.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_not_show_diff.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_but_no_repr.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/analyse_code_comments.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_mac_app.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_stdin.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_python_sys_executable.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_bin_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_stdin_contains_strings.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/start_binary_bundle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/add_from_future_import_division.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_tests.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/remove_tree.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_dist_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_commands.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_variable_names.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_selfx.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_line_count.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_host_and_user.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/env_run.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/extract_code_from_txt.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_environ_usage.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_install_script_bat.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_full_command_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/install_conda.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_lib_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_files.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/parallel_simple.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/assert_stdin_ends_with.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/help.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/make_dist.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/raise_exception_for_testing.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/prime_factors_of.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/list_modules.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/check_libcpp.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/sge_qstat_counts.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/list_source_files_sorted_by_size.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_number_of_processors.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/epydoc_run.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_date_and_time.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/any2unix.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_in_repositories.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/py_compile_all.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/start_process.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/list_files.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/ipython_shell_start.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_numpy_version.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_old_style_classes.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/path_utility.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_repository_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/import_all_ext.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/phil.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_cctbx_bundle_for_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/line_count.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_build_options.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/sge_available_slots.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/clear_paths.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_env.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_under_build.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/chunk.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_build_path.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/bundle_as_exe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/find_untested.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/scons.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/import_all_python.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/easy_qsub.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_python_dependencies.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/run_pickled_function.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_module_dependencies.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/make_sphinx_html.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/create_unzipsfx.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/show_pythonpath.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/dtrace.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line copying libtbx/command_line/bootstrap.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/gui_objects.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/parser.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst_tokenizer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/interface.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/experimental.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst_interface.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tokenizer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/command_line.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil copying libtbx/phil/tst_experimental.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/phil creating /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/FileSocket.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/FileClient.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/StartServer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/FileServer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server copying libtbx/server/SocketServer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/server creating /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/rpath.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_windows_exe.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_windows_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_mac_app.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/install_base_packages.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/make_bundle.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/install_conda.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/plus_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_mac_pkg.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/install_distribution.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/regenerate_module_files.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/write_gui_dispatcher_include.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/installer_utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/setup_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/create_cctbx_bundle_for_installer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/package_defs.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build copying libtbx/auto_build/bootstrap.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build creating /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/mp_handler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/result.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/stacktrace.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/cluster_handler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/philgen.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/mainthread.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/file_queue.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/thread_handler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/shared_resource.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/parallel_for.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/job_scheduler.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/socket_queue.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling copying libtbx/scheduling/process_pool.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling creating /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils copying libtbx/program_utils/result.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils copying libtbx/program_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils copying libtbx/program_utils/statistics_info.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils creating /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/copy_runtime_sources.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/install_bat.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/copy_build_libtbx.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/install_csh.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/copy_all.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle copying libtbx/bundle/utils.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/bundle creating /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/except_Exception.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/xcode_build_phase.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development copying libtbx/development/timers.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/development creating /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/pubmed.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/python_string.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx copying libtbx/sphinx/phil.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx creating /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils copying libtbx/test_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils copying libtbx/test_utils/parallel.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils copying libtbx/test_utils/pytest.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils creating /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/transfer.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/submission.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/polling.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/__init__.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/errors.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/util.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/status.py -> /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing creating /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos copying simtbx/kokkos/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos copying simtbx/kokkos/tst_kokkos_lib.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos creating /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/tst_exafel_api.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/tst_gpu_multisource_background.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu copying simtbx/gpu/tst_shoeboxes.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/gpu creating /<>/.pybuild/cpython3_3.12/build/simtbx/pixel copying simtbx/pixel/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/pixel creating /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/predictions.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/FormatHDF5AttributeGeometry.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling copying simtbx/modeling/forward_models.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/modeling creating /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_input.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/anisotropic_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_multisource_background.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/sim_data.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_minimal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_beam.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_init.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_basic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_threads.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gauss_argchk.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_frames.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_crystal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg creating /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/attr_list.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/stage_two_utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/device.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/parameter_errors.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/prep_stage2_input.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/ensemble_refine_launcher.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/phil.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/mpi_logger.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/psf.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/hopper_utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/hopper_io.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg copying simtbx/diffBragg/hopper_ensemble_utils.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg creating /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/stage_two_refiner.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/base_refiner.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/parameters.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners creating /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/manager.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/__init__.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems creating /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/fem_include_search_paths.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/show_calls.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/insert_write_at_start_of_each_procedure.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/cout.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/split.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line copying fable/command_line/read.py -> /<>/.pybuild/cpython3_3.12/build/fable/command_line creating /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line copying cctbx_website/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line copying cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line creating /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_11_script_1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_17_script_rfactors.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_10_doc_programming_tips_1.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_2_doc_hlo_intro.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_18_doc_programming_tips_2.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_1_template.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/__init__.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/exercise.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_19_doc_programming_tips_3.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_9_doc_maps_boxing.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_13_script_ideal_ss.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_8_doc_maps_intro.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_12_script_compare_ss.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_py_from_html.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression copying cctbx_website/regression/tst_15_doc_models_hierarchy.py -> /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression creating /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/generate_all.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/self_match.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/sample.py -> /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx creating /<>/.pybuild/cpython3_3.12/build/prime creating /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/run.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/view_fineslices.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/change_path_indexing_ambiguity.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/plotstats.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/ray_trace.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/change_basis.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/frame_extractor_by_scan.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/mpi_scale.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/viewstats.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/comparestats.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/iotacc.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/plot_energy_spectrum.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/mpi_run.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/spot_param_visualizer.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/r_mtz_mtz.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/cluster_isoform.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/explore_twin_operators.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/compare_solution_pickles.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/solve_indexing_ambiguity.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/prime_gui.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/postrefine.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line copying prime/command_line/print_integration_pickle.py -> /<>/.pybuild/cpython3_3.12/build/prime/command_line creating /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster copying prime/isoform_cluster/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster copying prime/isoform_cluster/mod_isoform_cluster.py -> /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster creating /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_leastsqr.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_util.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_lbfgs_partiality.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_perf.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_plotter.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_merge_data.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_partiality.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_outlier.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_gui_frames.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_mx.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_threads.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_misc.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_gui_dialogs.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_run.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/postrefine.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_input.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_pdb.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine copying prime/postrefine/mod_results.py -> /<>/.pybuild/cpython3_3.12/build/prime/postrefine creating /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/__init__.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/mod_indexing_ambiguity.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/mod_kmeans.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity copying prime/index_ambiguity/mod_lbfgs.py -> /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity creating /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/lbfgs_fem.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators copying scitbx/source_generators/flex_fwd_h.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators creating /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib copying scitbx/stdlib/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib creating /<>/.pybuild/cpython3_3.12/build/scitbx/array_family copying scitbx/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/array_family copying scitbx/array_family/flex.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/array_family copying scitbx/array_family/shared.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/array_family creating /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/robust_statistics.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/tst_random_transform.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/random_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/tst_robust.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/misc.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/signal_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/graph_tools.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/tst_graph.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/random_transform.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/command_line.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils copying scitbx/python_utils/dicts.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils creating /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface copying scitbx/iso_surface/tst_iso_surface.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface copying scitbx/iso_surface/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface creating /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils copying scitbx/graphics_utils/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils copying scitbx/graphics_utils/tst.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils creating /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/immoptibox_ports.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/flex_array_loops.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/rigid_body_refinement_core.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/flex_grid.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/lbfgs_linear_least_squares_fit.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/lbfgs_recipe.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/minimizer_comparisons.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/principal_axes_of_inertia.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/functions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/integrating_a_weighted_sinc_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/chebyshev_lsq_example.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples copying scitbx/examples/bootstrap.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples creating /<>/.pybuild/cpython3_3.12/build/scitbx/sparse copying scitbx/sparse/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/sparse creating /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/ext.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/svd.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/householder.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg copying scitbx/linalg/eigensystem.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/linalg creating /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_tardy_tree_find_paths.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tardy_tree.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_rigidity.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/test_cases_tardy_pdb.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/rigidity_matrix_symbolic.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/tst_tardy_tree.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph copying scitbx/graph/rigidity.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/graph creating /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/curve_fitting.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/periodogram.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/lefebvre.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/ext.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_zernike_mom.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/euler_angles.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/gumbel.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fliege_mayer_900.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/sphere_sphere_intersection.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/scale_curves.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/farey.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/clustering.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/zernike_align_fft.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_multivariate_moments.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fit_peak.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/chebyshev_lsq_fit.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/cubic_spline.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_bessel_zeros.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/besselk.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/so3_lie_algebra.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/superpose.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_so3_lie_algebra.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/des_3_240_21.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/distributions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_undirected_graph.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/undirected_graph.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fit_quadratic_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/spe.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fliege_mayer_400.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/des_3_100_13.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/fliege_mayer_900_ylm.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/minimum_covering_ellipsoid.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/multiple_superposition.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/breakpoint.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/gaussian_fit.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/gaussian.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/incremental_SO3_sampling.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_zernike.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/tst_2d_zernike.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math copying scitbx/math/sieve_of_eratosthenes.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math creating /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx copying scitbx/lstbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx copying scitbx/lstbx/normal_eqns_solving.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx copying scitbx/lstbx/normal_eqns.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx creating /<>/.pybuild/cpython3_3.12/build/scitbx/random copying scitbx/random/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/random creating /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/reparams.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/auxiliary.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/compulsory.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/realsymmetricpseudoinverse.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/refinebase.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/bounds.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/optional.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/min_logging.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/twisted_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin copying scitbx/dtmin/minimizer.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin creating /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_ext.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_lbfgs_fem.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_curvatures.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_func_free_line_search.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs copying scitbx/lbfgs/tst_mpi_split_evaluator.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs creating /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx copying scitbx/glmtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx creating /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/map.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/tst_map.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/vector.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/set.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/tst_set.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl copying scitbx/stl/tst_vector.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/stl creating /<>/.pybuild/cpython3_3.12/build/scitbx/wigner copying scitbx/wigner/tst_wigner3j.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/wigner copying scitbx/wigner/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/wigner creating /<>/.pybuild/cpython3_3.12/build/scitbx/matrix copying scitbx/matrix/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/matrix copying scitbx/matrix/row_echelon.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/matrix creating /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body copying scitbx/rigid_body/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body copying scitbx/rigid_body/tst.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body creating /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree copying scitbx/suffixtree/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree copying scitbx/suffixtree/single.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree creating /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python copying scitbx/boost_python/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python creating /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_reductions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_std_imports.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/operator_functor_info.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_apply.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_all.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_functors.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_algebras.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family creating /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington copying scitbx/examples/bevington/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington copying scitbx/examples/bevington/silver.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington creating /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_fit_quadratic_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_gcd.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_clustering.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_cubic_equation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_dmatrix.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_uniform_rotation_matrix.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_resample.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_gaussian.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_exp_functions.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_line_search.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_similarity_indices.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_angle_derivative.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_r3_rotation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_superpose.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_bessel.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_periodogram.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_g_function.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_math.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_halton.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_orthonormal_basis.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_curve_fitting.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_weighted_correlation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_quadrature.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_euler_angles.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_tetrahedron.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests copying scitbx/math/tests/tst_fit_peak.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests creating /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python copying scitbx/math/boost_python/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python creating /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests copying scitbx/lstbx/tests/tst_normal_equations.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests copying scitbx/lstbx/tests/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests copying scitbx/lstbx/tests/test_problems.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests creating /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_molecules.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_singular.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/free_motion_reference_impl.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_spherical_refinement.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_featherstone.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/featherstone.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion_hard.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_simulation.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_free_motion.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_molecules.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/utils.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto creating /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_tardy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/spatial_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/body_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/__init__.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_basic.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/wx_tardy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_energy_plots.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/make_bundles.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/featherstone.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/joint_lib.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tardy.py -> /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence # build the dxtbx python module dh_auto_build --sourcedirectory=dxtbx pybuild --build -i python{version} -p 3.12 --dir dxtbx I: pybuild base:311: /usr/bin/python3 setup.py build Found 20 dxtbx dispatchers Found 134 Format classes running build running build_py creating /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/ext.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/version.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/flumpy.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/imageset.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/filecache.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/datablock.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/filecache_controller.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/sequence_filenames.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx creating /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/load.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/imageset.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/filename.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize copying src/dxtbx/serialize/xds.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize creating /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/dlsnxs2cbf.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/print_header.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/install_format.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/show_mask_info.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/image2pickle.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/show_registry.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/image_average.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/print_matching_images.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/read_sequence.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/detector_superpose.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/debug_memory.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/saturation.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/plot_detector_models.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/radial_average.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/display_parallax_correction.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/overload.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/show_matching_formats.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line copying src/dxtbx/command_line/depends_on.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line creating /<>/.pybuild/cpython3_3.12/build/dxtbx/util copying src/dxtbx/util/dlsnxs2cbf.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/util copying src/dxtbx/util/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/util copying src/dxtbx/util/rotate_and_average.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/util creating /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/beam.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/profile.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/compare.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector_helpers_types.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector_helpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan_helpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/goniometer.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/crystal.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/experiment_list.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model creating /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniADSCHF4M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatRAXIS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerPetraP14.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSER.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVJHSim.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5SaclaRayonix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuPilatus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFBruker.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatStill.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFull.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLSI19_2.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnNoTS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPYmultitile.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCDBG.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMultiTileHierarchy.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonixSPring8.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI41.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigaku.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5PAL.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxED.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS12M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCNoDateStamp.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPYunspecifiedStill.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullByteOffset.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN445.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMultiImage.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/image.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPilatusHelpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMV.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI32.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMultiTile.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVCMOS1.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMRC.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatBrukerFixedChi.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatGatanDM4.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerChessID7B2.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatEDFALS733.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN915.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5EigerNearlyNexus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFHelpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuA200.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXDS.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCmlfsom.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI71.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonixXPP.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI51.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI31.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexusJungfrauHack.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCRayonix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/cbf_writer.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCMultipleDetectors.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVNOIR.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatBrukerPhoton.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI7d.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFFRayonixESRF.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexusJungfrauExt.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCJungfrau.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatRAXISII.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMultiImageLazy.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/nxmx_writer.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN905.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmx.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatROD.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatBruker.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/nexus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN442.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCEpix.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLS16M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5Lambda.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatMarIP.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTC.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/TemplatePYCXI61.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSNAPSID19.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatRAXISIVSpring8.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPY.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatXTCCspad.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/Registry.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniEiger.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/Format.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusXXX.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVHamamatsu.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMini.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBF.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN926.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxEigerFilewriter.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFCspad.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNexusTimepix2M.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN920.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuEiger.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatus.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusHelpers.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatTIFF.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVTimePix_SU.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatNXmxDLS16MI03.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatPYunspecified.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVRigakuSaturn.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN457.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatDIP2030b.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSC.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5Sacla.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatHDF5SaclaMPCCD.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/FormatSMVADSCSN928.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format creating /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus copying src/dxtbx/nexus/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus creating /<>/.pybuild/cpython3_3.12/build/dxtbx/data copying src/dxtbx/data/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data creating /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/SmarGonShadowMask.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking creating /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/data/beamline_defs/__init__.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs copying src/dxtbx/py.typed -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_format_image_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/imageset.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_flumpy.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_imageset_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_format_nexus_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_model_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/error.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/CMakeLists.txt -> /<>/.pybuild/cpython3_3.12/build/dxtbx copying src/dxtbx/dxtbx_masking_ext.pyi -> /<>/.pybuild/cpython3_3.12/build/dxtbx creating /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family copying src/dxtbx/array_family/flex_table_suite.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family copying src/dxtbx/array_family/flex_table.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family copying src/dxtbx/array_family/ref_pickle_double_buffered.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family creating /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/ext.cpp -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/flumpy.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/imageset_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/compression.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python copying src/dxtbx/boost_python/compression.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python creating /<>/.pybuild/cpython3_3.12/build/dxtbx/example copying src/dxtbx/example/resolution_corners.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/example copying src/dxtbx/example/to_xds.py -> /<>/.pybuild/cpython3_3.12/build/dxtbx/example copying src/dxtbx/model/model_helpers.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/parallax_correction.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/multi_axis_goniometer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/virtual_panel.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan_helpers.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/panel_data.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/goniometer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/scan.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/experiment.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/pixel_to_millimeter.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/panel.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/ray_intersection.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/spectrum.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/kappa_goniometer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/detector.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/experiment_list.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/crystal.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model copying src/dxtbx/model/beam.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model creating /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/parallax_correction.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/goniometer.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/detector.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/scan_helpers.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/experiment_list.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/to_from_dict.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/kappa_goniometer.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/pixel_to_millimeter.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/crystal.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/multi_axis_goniometer.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/panel.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/spectrum.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/experiment.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/model_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/scan.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/pickle_suite.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/model/boost_python/beam.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python copying src/dxtbx/format/README.md -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format copying src/dxtbx/format/image.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format creating /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/nexus_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/cbf_read_buffer.cpp -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/image_ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/format/boost_python/cbf_read_buffer.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python copying src/dxtbx/data/detectors.lib -> /<>/.pybuild/cpython3_3.12/build/dxtbx/data copying src/dxtbx/masking/SConscript -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/goniometer_shadow_masking.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking copying src/dxtbx/masking/masking.h -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking creating /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python copying src/dxtbx/masking/boost_python/ext.cc -> /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python # build the cctbx extensions and libraries dh_auto_build -- -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 4 " pybuild --build -i python{version} -p 3.12 -s custom "--build-args=cd {build_dir}_ && ./bin/libtbx.scons -j 4 " I: pybuild base:311: cd '/<>/.pybuild/cpython3_3.12/build'_ && ./bin/libtbx.scons -j 4 scons: Reading SConscript files ... /<>/libtbx/SConscript:1401: SyntaxWarning: invalid escape sequence '\.' cuda_version = re.findall('release [0-9]+\.*[0-9]+', line) libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=3 LDFLAGS = -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python312 BOOST_NUMPY_LIB_VERSION: boost_numpy312 BOOST_VERSION: 108300 Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/<>/.pybuild/cpython3_3.12/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/<>/annlib_adaptbx/src -Iannlib_adaptbx/include -I/<>/annlib_adaptbx/include /<>/annlib_adaptbx/ann/ann_adaptor.cpp g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/usr/include/python3.12 -Iannlib_adaptbx/ann/boost_python/src -I/<>/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/<>/annlib_adaptbx/ann/boost_python/include /<>/annlib_adaptbx/ann/boost_python/annlib_ext.cpp g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/blobs_cmd.cpp g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/asymmetric_map.cpp g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/skeletons.cpp g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/dijkstra.cpp g++ -o iotbx/xplor/map_reader.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/iotbx/xplor/map_reader.cpp g++ -o iotbx/xplor/map_writer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/iotbx/xplor/map_writer.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/cut.cpp g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp g++ -o cctbx/eltbx/basic.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/basic.cpp g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/xray_scattering/it1992.cpp g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/eltbx/xray_scattering/wk1995.cpp g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection 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-I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/reference_settings/wyckoff.cpp g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/uctbx/uctbx.cpp g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/uctbx/spoil_optimization.cpp g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/uctbx/crystal_orientation.cpp g++ -o omptbx/stubs.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> /<>/omptbx/stubs.cpp g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/breadth_first_search_ext.cpp g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/clustering_algorithm_ext.cpp g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/connected_component_algorithm_ext.cpp g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lm Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/graph_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/graph_structure_comparison_ext.cpp g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/maximum_clique_ext.cpp g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/metric_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/min_cut_max_flow_ext.cpp g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/graph/utility_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/hybrid_times_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/meta_ext.cpp g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/optional_ext.cpp g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/rational_ext.cpp g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/std_pair_ext.cpp g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/boost_adaptbx/tests/boost_thread_test.cpp g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/tests/python_streambuf_test_ext.cpp g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> /<>/boost_adaptbx/tests/tst_optional_copy.cpp g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/boost_adaptbx/tuple_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/boost_adaptbx/tests/python_streambuf_test_ext.cpp:2: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 /<>/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/buffer_based_service.cpp g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/cbf_adaptor.cpp g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/usr/include/hdf5/serial -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx /<>/cbflib_adaptbx/detectors/mar_adaptor.cpp g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DCBF_NO_REGEX -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/hdf5/serial /<>/cbflib_adaptbx/detectors/tst_memory.cpp g++ -o ccp4io_adaptbx/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/ccp4io -I/usr/include -I/usr/include/python3.12 /<>/ccp4io_adaptbx/ext.cpp gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/<> -I/usr/include -I/usr/include/ccp4 -I/<>/ccp4io -I. -I/<> /<>/ccp4io_adaptbx/fortran_call_stubs.c gcc -o ccp4io_adaptbx/printf_wrappers.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/<> -I/usr/include -I/usr/include/ccp4 -I/<>/ccp4io -I. -I/<> /<>/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/adp_restraints/adp_restraints_bpl.cpp g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/adp_restraints/adp_restraints_ext.cpp g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/adp_restraints/adp_similarity_bpl.cpp g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/adp_restraints/aniso_restraints_bpl.cpp g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/adp_restraints/isotropic_adp_bpl.cpp g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/adp_restraints/rigid_bond_bpl.cpp g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 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-Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/getting_started.cpp g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/lattice_symmetry.cpp g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/sym_equiv_sites.cpp g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/sys_abs_equiv_space_groups.cpp g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry/boost_python/geometry_ext.cpp g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/angle_bpl.cpp g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/bond_bpl.cpp g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/angle.h:6, from /<>/cctbx/geometry_restraints/angle_bpl.cpp:13: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/angle_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/bond_similarity.h:6, from /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/geometry_restraints/bond_similarity.h: In constructor ‘cctbx::geometry_restraints::bond_similarity::bond_similarity(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /<>/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i>/cctbx/geometry_restraints/bond_similarity.h: In constructor ‘cctbx::geometry_restraints::bond_similarity::bond_similarity(const cctbx::uctbx::unit_cell&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /<>/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/cctbx/geometry_restraints/bond_misc.h:4, from /<>/cctbx/geometry_restraints/bond_bpl.cpp:14: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/bond_bpl.cpp:10: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /<>/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /<>/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/bond_sorted_bpl.cpp In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/cctbx/geometry_restraints/bond_sorted.h:4, from /<>/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/chirality_bpl.cpp /<>/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /<>/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ /<>/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ /<>/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here /<>/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym>/cctbx/crystal/direct_space_asu.h:869:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/dihedral_bpl.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/chirality.h:5, from /<>/cctbx/geometry_restraints/chirality_bpl.cpp:13: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/chirality_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/dihedral.h:6, from /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:12: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/geometry_restraints/dihedral_bpl.cpp:13: /<>/cctbx/geometry_restraints/proxy_select.h: In instantiation of ‘scitbx::af::shared cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here /<>/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/geometry_restraints_ext.cpp g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/motif_bpl.cpp g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/nonbonded.h:4, from /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/parallelity_bpl.cpp In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/nonbonded.h:4, from /<>/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /<>/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/crystal/neighbors_fast.h:5, from /<>/cctbx/crystal/pair_tables.h:4, from /<>/cctbx/geometry_restraints/nonbonded_sorted.h:5: /<>/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /<>/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ /<>/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here /<>/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/parallelity_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/geometry_restraints/planarity_bpl.cpp g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/asymmetric_map_ext.cpp g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/maptbx/bcr/bcr_ext.cpp In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/cctbx/geometry_restraints/planarity_bpl.cpp:11: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/coordinate_transformers.cpp g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/grid_tags.cpp g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/gridding.cpp g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/maptbx_ext.cpp g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/misc.cpp g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/peak_search.cpp g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/pymol_interface.cpp g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/statistics.cpp g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/maptbx/boost_python/structure_factors.cpp g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/masks/boost_python/masks_ext.cpp g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/math/boost_python/math_ext.cpp g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/math/time_trigonometry.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_array.hpp:17, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/math/cos_sin_table.h:6, from /<>/cctbx/math/time_trigonometry.cpp:1: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lm g++ -o cctbx/merging/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/merging/ext.cpp g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/miller/boost_python/amplitude_normalisation.cpp g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/miller/boost_python/asu.cpp g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/miller/boost_python/bins.cpp g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/miller/boost_python/change_basis.cpp g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 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-DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/sgtbx/boost_python/wyckoff.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/translation_search/boost_python/fast_nv1995.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/translation_search/boost_python/fast_terms.cpp g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/translation_search/boost_python/symmetry_flags.cpp g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/translation_search/boost_python/translation_search_ext.cpp g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/uctbx/boost_python/uctbx_ext.cpp g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DHAVE_SINGLEFILE_NCDIST -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/uctbx/determine_unit_cell/ext.cpp g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/conversions.cpp g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/curvatures_simple.cpp g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/curvatures_simple.h:4, from /<>/cctbx/xray/boost_python/curvatures_simple.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/extinction.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/gradients_direct.h:4, from /<>/cctbx/xray/each_hkl_gradients_direct.h:4, from /<>/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/f_model_bpl.cpp g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/fast_gradients.cpp g++ -o cctbx/xray/boost_python/gradient_flags.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/gradient_flags.cpp g++ -o cctbx/xray/boost_python/gradients_direct.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/gradients_direct.cpp In file included from /<>/cctbx/miller/match_indices.h:4, from /<>/cctbx/miller/lookup_utils.h:11, from /<>/cctbx/xray/f_model.h:11, from /<>/cctbx/xray/boost_python/f_model_bpl.cpp:3: /<>/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /<>/scitbx/error_utils.h:4, from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/cctbx/xray/f_model.h:4: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /<>/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here /<>/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/f_model.h:732:10: note: in expansion of macro ‘CCTBX_ASSERT’ 732 | CCTBX_ASSERT( iselection[ii]>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/sampling_base.h:4, from /<>/cctbx/xray/fast_gradients.h:4, from /<>/cctbx/xray/boost_python/fast_gradients.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/gradients_direct.h:4, from /<>/cctbx/xray/boost_python/gradients_direct.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/grouped_data.cpp In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/minimization.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/minimization.cpp In file included from /<>/cctbx/miller/match_indices.h:4, from /<>/cctbx/miller/lookup_utils.h:11, from /<>/cctbx/xray/grouped_data.h:14, from /<>/cctbx/xray/boost_python/grouped_data.cpp:3: /<>/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /<>/scitbx/error_utils.h:4, from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/cctbx/xray/grouped_data.h:4: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/parameter_map.cpp g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/sampled_model_density.cpp /<>/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /<>/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here /<>/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii>/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::r_abs() [with FloatType = double]’: /<>/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here /<>/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii>/cctbx/xray/grouped_data.h: In instantiation of ‘std::vector cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /<>/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ /<>/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here /<>/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii>/cctbx/xray/grouped_data.h:231:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii>/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::unmerged_data::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here /<>/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii>/cctbx/xray/grouped_data.h:61:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii>/cctbx/xray/grouped_data.h:67:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here /<>/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii>/cctbx/xray/grouped_data.h:167:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/minimization.h:4, from /<>/cctbx/xray/boost_python/minimization.cpp:8: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/sampling_base.h:4, from /<>/cctbx/xray/sampled_model_density.h:6, from /<>/cctbx/xray/boost_python/sampled_model_density.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/boost_python/parameter_map.cpp:10: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/xray/boost_python/parameter_map.cpp:9: /<>/cctbx/xray/parameter_map.h: In instantiation of ‘void cctbx::xray::parameter_map::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /<>/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ /<>/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here /<>/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o cctbx/xray/boost_python/sampling_base.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/sampling_base.cpp In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/scatterer.cpp g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/scatterer_flags.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/sampling_base.h:4, from /<>/cctbx/xray/boost_python/sampling_base.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scatterer_utils.h:4, from /<>/cctbx/xray/boost_python/scatterer.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /<>/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here /<>/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /<>/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /<>/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here /<>/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/boost_python/scatterer_flags.cpp:7: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/sgtbx/tensor_rank_2.h:9, from /<>/cctbx/sgtbx/site_symmetry.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/scattering_type_registry.cpp g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/sigmaa.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/xray/boost_python/scattering_type_registry.cpp: At global scope: /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:49:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/sigmaa.h:4, from /<>/cctbx/xray/boost_python/sigmaa.cpp:8: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/structure_factors_direct.cpp g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/structure_factors_simple.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/structure_factors_direct.h:4, from /<>/cctbx/xray/boost_python/structure_factors_direct.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/structure_factors_simple.h:12, from /<>/cctbx/xray/boost_python/structure_factors_simple.cpp:3: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o cctbx/xray/boost_python/targets.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/targets.cpp In file included from /<>/scitbx/array_family/small.h:4, from /<>/cctbx/uctbx.h:11, from /<>/cctbx/sgtbx/change_of_basis_op.h:6, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/cctbx/sgtbx/site_constraints.h:4, from /<>/cctbx/sgtbx/site_symmetry.h:4: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /<>/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ /<>/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ /<>/cctbx/xray/scattering_type_registry.h:192:40: required from here /<>/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/twin_components.cpp g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/twin_targets.cpp g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/boost_python/xray_ext.cpp g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/xray/observations/boost_python/observations.cpp In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/stl/vector_wrapper.h:4, from /<>/cctbx/xray/boost_python/twin_components.cpp:6: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ /<>/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ /<>/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/cctbx/miller/match_indices.h:4, from /<>/cctbx/miller/lookup_utils.h:11, from /<>/cctbx/xray/twin_targets.h:14, from /<>/cctbx/xray/boost_python/twin_targets.cpp:3: /<>/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /<>/scitbx/error_utils.h:4, from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/cctbx/xray/twin_targets.h:4: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here /<>/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here /<>/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here /<>/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here /<>/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here /<>/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here /<>/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /<>/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here /<>/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /<>/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/cctbx/xray/observations/boost_python/observations_ext.cpp /<>/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here /<>/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii>/cctbx/xray/twin_targets.h:10: /<>/scitbx/math/quadrature.h: In instantiation of ‘FloatType scitbx::math::quadrature::gauss_legendre_engine::refine(const FloatType&) [with FloatType = double]’: /<>/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ /<>/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here /<>/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from /<>/cctbx/xray/targets/shelxl_wght_ls.hpp:1, from /<>/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp:23: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o chiltbx/handle_test.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> /<>/chiltbx/handle_test.cpp g++ -o chiltbx/handle_test -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread chiltbx/handle_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o cma_es/cma/cmaes.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/cma_es/cma/cmaes.cpp g++ -o cma_es/cma_es_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/cma_es/cma_es_ext.cpp g++ -o dxtbx/src/dxtbx/boost_python/compression.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/compression.cc /<>/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /<>/dxtbx/src/dxtbx/boost_python/compression.cc:123:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY6_decompress(int*, const char*, const char*, int, int)’: /<>/dxtbx/src/dxtbx/boost_python/compression.cc:203:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 203 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:224:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 224 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:250:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 250 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:257:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 257 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/compression.cc:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 278 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/ext.cpp g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /<>/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:184:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 184 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:184:5: note: in expansion of macro ‘DXTBX_ASSERT’ 184 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:219:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /<>/dxtbx/src/dxtbx/boost_python/ext.cpp:220:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 220 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/imageset.h:24, from /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/imageset.h:25: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/imageset.h:27: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc In file included from /<>/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /<>/dxtbx/src/dxtbx/imageset.h:30: /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /<>/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /<>/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /<>/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /<>/dxtbx/src/dxtbx/imageset.h:647:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 647 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /<>/dxtbx/src/dxtbx/imageset.h:1115:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1115 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: At global scope: /<>/dxtbx/src/dxtbx/imageset.h:1062:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1062 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1202:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1202 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /<>/dxtbx/src/dxtbx/imageset.h:1138:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1138 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /<>/dxtbx/src/dxtbx/imageset.h:1138:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1138 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /<>/dxtbx/src/dxtbx/imageset.h:1152:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1152 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /<>/dxtbx/src/dxtbx/imageset.h:1152:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1152 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: At global scope: /<>/dxtbx/src/dxtbx/imageset.h:1062:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1062 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1473:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1473 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /<>/dxtbx/src/dxtbx/imageset.h:1237:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1237 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /<>/dxtbx/src/dxtbx/imageset.h:1276:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1276 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /<>/dxtbx/src/dxtbx/imageset.h:1398:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1398 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1414:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1414 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h:1414:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1414 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /<>/dxtbx/src/dxtbx/imageset.h:468:56: required from here /<>/dxtbx/src/dxtbx/imageset.h:501:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 501 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /<>/dxtbx/src/dxtbx/imageset.h:470:55: required from here /<>/dxtbx/src/dxtbx/imageset.h:501:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /<>/dxtbx/src/dxtbx/imageset.h:472:53: required from here /<>/dxtbx/src/dxtbx/imageset.h:501:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:249:56: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:253:56: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:257:58: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:261:52: required from here /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:231:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 231 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:235:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 235 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here /<>/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/masking/boost_python/ext.cc g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc In file included from /<>/dxtbx/src/dxtbx/masking/masking.h:16, from /<>/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/masking/masking.h:17: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /<>/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /<>/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /<>/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/beam.h:17: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /<>/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/experiment.cc In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:22: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:18: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:9: note: in expansion of macro ‘DXTBX_ASSERT’ 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:100:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 100 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:124:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 124 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:134:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 134 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:158:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 158 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:168:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 168 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/detector.cc:228:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 228 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/experiment.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/experiment.h:23: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/experiment.h:25: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/experiment.h:19: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc In file included from /<>/dxtbx/src/dxtbx/model/experiment.h:22, from /<>/dxtbx/src/dxtbx/model/experiment_list.h:23, from /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/experiment.h:23: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/experiment.h:25: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/experiment_list.h:20: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /<>/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/model_ext.cc In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/goniometer.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /<>/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc:20: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/dxtbx/src/dxtbx/model/goniometer.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/dxtbx/src/dxtbx/model/boost_python/panel.cc:18: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /<>/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec2.h:4, from /<>/dxtbx/src/dxtbx/model/scan.h:17: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:62:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 62 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /<>/dxtbx/src/dxtbx/model/boost_python/scan.cc:191:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/<> -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DBUILD_CBF -I/<> -I/<>/.pybuild/cpython3_3.12/base/include -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/dxtbx/src -I/usr/include/cbflib -I/<>/cbflib_adaptbx -I/usr/include/python3.12 -I/usr/include/hdf5/serial /<>/dxtbx/src/dxtbx/model/boost_python/spectrum.cc In file included from /<>/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lboost_thread -lboost_system -lhdf5 -lcbf Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lcbf -lcbf-private -lm -lhdf5 g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o fable/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<>/fable -I/<> -I/usr/include -I/usr/include/python3.12 /<>/fable/ext.cpp In file included from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /<>/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:549:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 549 | vec3 direction_; | ^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:91:5: warning: when initialized here [-Wreorder] 91 | Beam() | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:124:5: warning: when initialized here [-Wreorder] 124 | Beam(vec3 direction, double wavelength) | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:163:5: warning: when initialized here [-Wreorder] 163 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:191:5: warning: when initialized here [-Wreorder] 191 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /<>/dxtbx/src/dxtbx/model/beam.h:560:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 560 | double wavelength_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:550:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 550 | double divergence_; | ^~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/beam.h:225:5: warning: when initialized here [-Wreorder] 225 | Beam(vec3 direction, | ^~~~ /<>/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /<>/dxtbx/src/dxtbx/model/beam.h:740:52: warning: left operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /<>/dxtbx/src/dxtbx/model/beam.h:740:60: warning: right operand of comma operator has no effect [-Wunused-value] 740 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /<>/dxtbx/src/dxtbx/model/scan.h:22, from /<>/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /<>/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /<>/dxtbx/src/dxtbx/model/scan_helpers.h:85:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 85 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan()’: /<>/dxtbx/src/dxtbx/model/scan.h:504:32: warning: ‘dxtbx::model::Scan::epochs_’ will be initialized after [-Wreorder] 504 | scitbx::af::shared epochs_; | ^~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:502:9: warning: ‘int dxtbx::model::Scan::batch_offset_’ [-Wreorder] 502 | int batch_offset_; | ^~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:39:5: warning: when initialized here [-Wreorder] 39 | Scan() | ^~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/dxtbx/src/dxtbx/model/spectrum.h:9, from /<>/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /<>/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, scitbx::vec2, const scitbx::af::shared&, const scitbx::af::shared&, int)’: /<>/dxtbx/src/dxtbx/model/scan.h:99:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:99:7: note: in expansion of macro ‘DXTBX_ASSERT’ 99 | DXTBX_ASSERT(exposure_times_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:100:7: note: in expansion of macro ‘DXTBX_ASSERT’ 100 | DXTBX_ASSERT(epochs_.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /<>/dxtbx/src/dxtbx/model/scan.h:231:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:231:7: note: in expansion of macro ‘DXTBX_ASSERT’ 231 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /<>/dxtbx/src/dxtbx/model/scan.h:237:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/dxtbx/src/dxtbx/model/scan.h:237:7: note: in expansion of macro ‘DXTBX_ASSERT’ 237 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/font_ucs_10x20.cpp g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/font_ucs_8x13.cpp In file included from /<>/fable/ext.cpp:5: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/utils/string_to_double.hpp:5, from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/ext.cpp:6: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string.hpp:6, from /<>/fable/fem/str_ref.hpp:5, from /<>/fable/fem/format.hpp:5, from /<>/fable/ext.cpp:4: /<>/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /<>/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /<>/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /<>/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /<>/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/font_ucs_9x15.cpp g++ -o gltbx/fonts_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/fonts_ext.cpp g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_00_bpl.cpp g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_01_bpl.cpp g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_02_bpl.cpp g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_03_bpl.cpp g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_04_bpl.cpp g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_05_bpl.cpp g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_06_bpl.cpp g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_defines_07_bpl.cpp g++ -o gltbx/gl_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/gl_ext.cpp g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_00_bpl.cpp g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_01_bpl.cpp g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_02_bpl.cpp g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_03_bpl.cpp g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_04_bpl.cpp g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_05_bpl.cpp g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 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-I/usr/include/python3.12 gltbx/gl_functions_08_bpl.cpp g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_09_bpl.cpp g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_13_bpl.cpp g++ -o gltbx/gl_functions_14_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/gl_functions_14_bpl.cpp g++ -o gltbx/gl_functions_15_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat 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-I/usr/include/python3.12 /<>/gltbx/glu_ext.cpp g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/glu_functions_00_bpl.cpp g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 gltbx/glu_functions_03_bpl.cpp g++ -o gltbx/quadrics_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/quadrics_ext.cpp g++ -o gltbx/util_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/util_ext.cpp g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/gltbx/viewer_utils_ext.cpp g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/ccp4_map/ext.cpp /<>/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /<>/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /<>/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /<>/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /<>/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /<>/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /<>/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /<>/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /<>/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /<>/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /<>/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /<>/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/cif/boost_python/cif_ext.cpp g++ -o iotbx/detectors/bruker.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/bruker.cpp g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/bruker_ext.cpp g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/detectors_ext.cpp g++ -o iotbx/detectors/image_divider.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/detectors/image_divider.cpp g++ -o iotbx/dsn6/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/dsn6/ext.cpp g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/misc/boost_python/dtrek_ext.cpp g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/misc/boost_python/scalepack_ext.cpp g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/batch_bpl.cpp g++ -o iotbx/mtz/column.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/column.cpp g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/column_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/column.h:4, from /<>/iotbx/mtz/column.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /<>/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/batch_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/batch_bpl.cpp:78:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/crystal.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/crystal.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/crystal.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/column.h:4, from /<>/iotbx/mtz/column_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/column_bpl.cpp:76:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/crystal_bpl.cpp g++ -o iotbx/mtz/dataset.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/dataset.cpp g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/dataset_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/dataset.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/ext.cpp g++ -o iotbx/mtz/object.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/mtz/object.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/crystal_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/object_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/mtz/object_bpl.cpp In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/crystal_bpl.cpp:42:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx/hendrickson_lattman.h:4, from /<>/cctbx/miller/sym_equiv.h:4, from /<>/cctbx/miller/asu.h:4, from /<>/iotbx/mtz/object.cpp:5: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/dataset_bpl.cpp:6: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/hendrickson_lattman.h:9, from /<>/iotbx/mtz/object.h:13: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/mtz/dataset_bpl.cpp:43:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /<>/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl>/iotbx/mtz/object.cpp: In member function ‘scitbx::af::shared iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /<>/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i>/iotbx/mtz/object.cpp: In member function ‘scitbx::af::shared iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /<>/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/sgtbx/rot_mx.h:4, from /<>/cctbx/sgtbx/rt_mx.h:4, from /<>/cctbx/sgtbx/change_of_basis_op.h:4, from /<>/cctbx/sgtbx/tr_group.h:4, from /<>/cctbx/sgtbx/space_group.h:4, from /<>/iotbx/mtz/object.h:12, from /<>/iotbx/mtz/crystal.h:4, from /<>/iotbx/mtz/dataset.h:4, from /<>/iotbx/mtz/batch.h:4, from /<>/iotbx/mtz/object_bpl.cpp:9: /<>/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /<>/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /<>/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/pdb/atom_selection.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/atom_selection.cpp g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/common_residue_names_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/atom_selection.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/construct_hierarchy.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/construct_hierarchy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/ext.cpp g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hierarchy_atom_bpl.cpp g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy_atoms.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp:242:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 242 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /<>/iotbx/pdb/hierarchy_atoms.cpp:248:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 248 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /<>/iotbx/pdb/hierarchy_atoms.cpp:257:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 257 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /<>/iotbx/pdb/hierarchy_atoms.cpp:261:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 261 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hierarchy_ext.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/iotbx/pdb/hierarchy_ext.cpp:11: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/function/function_base.hpp:28, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy_select.cpp g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hierarchy_write.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_select.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_write.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/hybrid_36_bpl.cpp gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hybrid_36_c.c g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/hybrid_36_cpp.cpp g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/<>/fable iotbx/pdb/hybrid_36_fem.cpp In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/input.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/input.cpp g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/input_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/input.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/input_write.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/input_write.cpp In file included from /<>/scitbx/misc/file_utils.h:4, from /<>/iotbx/pdb/input.cpp:3: /<>/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /<>/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /<>/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/input_write.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/overall_counts.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/overall_counts.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/rna_dna_atom_names_bpl.cpp g++ -o iotbx/pdb/utils.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/utils.cpp g++ -o iotbx/pdb/write_utils.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 /<>/iotbx/pdb/write_utils.cpp g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/pdb/xray_structure_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/write_utils.h:5, from /<>/iotbx/pdb/write_utils.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /<>/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 -I/<>/fable /<>/iotbx/shelx/shelx_ext.cpp g++ -o iotbx/wildcard_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 /<>/iotbx/wildcard_ext.cpp g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/iotbx/xplor/boost_python/xplor_ext.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/iotbx/pdb/xray_structure.h:6, from /<>/iotbx/pdb/xray_structure_bpl.cpp:7: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_system -lboost_python312 -lm In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm /usr/bin/ld: Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm boost_adaptbx/meta_ext.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:50:(.text+0x70): warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:51:(.text+0x82): warning: feenableexcept is not implemented and will always fail /usr/bin/ld: boost_adaptbx/meta_ext.o: in function `Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' boost_adaptbx::floating_point::is_division_by_zero_trapped()': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:65:(.text+0xa4): warning: fegetexcept is not implemented and will always fail g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lcbf-private -lcbf -lboost_thread -lboost_system -lboost_python312 -lm -lhdf5 Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm -lccp4c Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o scitbx/boost_python/utils.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/boost_python/utils.cpp Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o lib/ccp4io_adaptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=ccp4io_adaptbx_ext.so.0 ccp4io_adaptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lccp4io -lccp4c -lssm -lmmdb2 -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/boost_python/slice.cpp Create symlinks for: 'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so.0'->'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so'->'lib/ccp4io_adaptbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/utils.cpp g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lhdf5 In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/boost_python/utils.h:5, from /<>/scitbx/array_family/boost_python/utils.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lhdf5 /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lccp4c -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o ucif/cifParser.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/ucif/cifParser.cpp g++ -o ucif/cifLexer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/ucif/cifLexer.cpp g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm -lantlr3c Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lboost_thread -lboost_system -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lboost_thread -lboost_system -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python312 -lcbf -lhdf5 g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -L/<>/.pybuild/cpython3_3.12/base/lib -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python312 -lcbf -lboost_thread -lboost_system -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python312 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread -lboost_system Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/dxtbx_toolbox/libdistl.cpp Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/dxtbx_toolbox/distl.cpp Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/spot.cpp Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/libdistl.cpp g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/hough.cpp g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/distl.cpp g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Ispotfinder/src -I/<>/spotfinder/src -Ispotfinder/include -I/<>/spotfinder/include /<>/spotfinder/core_toolbox/spotfilter.cpp g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/masks/atom_mask.cpp g++ -o mmtbx/tls/decompose.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/decompose.cpp g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/dps_core/dps_core.cpp g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/dps_core/directional_fft.cpp g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lm Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o rstbx/dps_core/direction.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/dps_core/direction.cpp g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/indexing_api/indexing_api.cpp g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/diffraction/ewald_sphere.cpp g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/diffraction/partial_spot_position_partial_H.cpp g++ -o scitbx/minpack/raw.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/minpack/raw.cpp gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> /<>/scitbx/slatec/lib_c.c g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/affine.cpp g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lcctbx -lm Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/geometrical_hydrogens.cpp g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/occupancy.cpp g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/reparametrisation.cpp g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/rigid.cpp g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/same_group.cpp g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/scaled_adp.cpp g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/shared.cpp g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/special_position.cpp g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/symmetry_equivalent.cpp g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include /<>/mmtbx/alignment/alignment_ext.cpp g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/building/loop_closure/ccd_bpl.cpp g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/bulk_solvent/bulk_solvent_ext.cpp g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/bulk_solvent/bulk_solvent.cpp g++ -o mmtbx/cablam/boost_python/cablam_align_utils_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/cablam/boost_python/cablam_align_utils_ext.cpp g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/den/boost_python/den_ext.cpp g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/secondary_structure/dssp_ext.cpp In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/mmtbx/den/den.h:2, from /<>/mmtbx/den/boost_python/den_ext.cpp:12: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/sgtbx/tensor_rank_2.h:9, from /<>/cctbx/sgtbx/site_symmetry.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_cablam_align_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_cablam_align_utils_ext.so.0 mmtbx/cablam/boost_python/cablam_align_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_cablam_align_utils_ext.so.0.0.1' 'lib/mmtbx_cablam_align_utils_ext.so.0'->'lib/mmtbx_cablam_align_utils_ext.so.0.0.1' 'lib/mmtbx_cablam_align_utils_ext.so'->'lib/mmtbx_cablam_align_utils_ext.so.0.0.1' g++ -o mmtbx/dynamics/dynamics_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/dynamics/dynamics_ext.cpp g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/dynamics/dynamics.cpp g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/f_model/f_model_ext.cpp g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/asa_ext.cpp g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/clash_ext.cpp g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/indexing_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/object_manager.hpp:8, from /usr/include/boost/python/extract.hpp:10, from /<>/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/primitive_ext.cpp g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/shared_types_ext.cpp g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp In file included from /usr/include/boost/function/detail/requires_cxx11.hpp:9, from /usr/include/boost/function/detail/prologue.hpp:12, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/hydrogens/hydrogens_ext.cpp g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/masks/masks_ext.cpp g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/max_lik/max_lik_ext.cpp g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/max_lik/max_lik.cpp g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/bulk_solvent/mosaic_ext.cpp g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/ncs/cartesian_restraints_ext.cpp g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/ncs/tncs_ext.cpp g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/pair_interaction/interaction_ext.cpp g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/boost_python/probe_bpl.cpp g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/Scoring.cpp g++ -o lib/mmtbx_ncs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_ext.so.0 mmtbx/ncs/tncs_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/DotSpheres.cpp g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/probe/SpatialQuery.cpp g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/boost_python/reduce_bpl.cpp ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o ranlib probe/lib/libprobelib.a g++ -o mmtbx/reduce/PositionReturn.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/PositionReturn.cpp In file included from /<>/cctbx/xray/scatterer.h:5, from /<>/cctbx/restraints.h:6, from /<>/cctbx/geometry_restraints/dihedral.h:6, from /<>/mmtbx/geometry_restraints/ramachandran.h:10, from /<>/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/mmtbx/geometry_restraints/ramachandran.h: In instantiation of ‘scitbx::af::tiny mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /<>/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here /<>/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i>/mmtbx/geometry_restraints/ramachandran.h:284:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /<>/cctbx/geometry_restraints/dihedral.h:8: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -Lprobe/lib -L/<>/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/InteractionGraph.cpp g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/mmtbx/reduce/Optimizers.cpp g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/rotamer/fit_ext.cpp In file included from /<>/cctbx/sgtbx/wyckoff.h:4, from /<>/cctbx/sgtbx/sym_equiv_sites.h:5, from /<>/cctbx/crystal/direct_space_asu.h:4, from /<>/cctbx/geometry_restraints/asu_cache.h:4, from /<>/cctbx/geometry_restraints/bond.h:5, from /<>/mmtbx/geometry_restraints/reference_coordinate.h:2, from /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /<>/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /<>/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:14: /<>/cctbx/geometry_restraints/proxy_select.h: In instantiation of ‘scitbx::af::shared cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here /<>/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /<>/cctbx/sgtbx/site_symmetry.h:6: /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:203:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /<>/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /<>/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ /<>/cctbx/sgtbx/site_symmetry.h:214:75: required from here /<>/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_array.hpp:23, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/sgtbx/tensor_rank_2.h:9, from /<>/cctbx/sgtbx/site_symmetry.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/rsr/rsr_ext.cpp g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/scaling_ext.cpp g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/twinning_bpl.cpp g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -Lreduce/lib -L/<>/reduce/lib -Lprobe/lib -L/<>/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/relative_scaling_bpl.cpp g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/scaling/outlier_bpl.cpp g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.12 /<>/mmtbx/secondary_structure/ext.cpp g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/decompose_ext.cpp g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/tls_ext.cpp g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/optimise_amplitudes.cpp g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/optimise_amplitudes_ext.cpp g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/utils.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/utils.cpp g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/tls/utils_ext.cpp g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/utils/utils_ext.cpp g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/validation/ramachandran/rama_eval_bpl.cpp g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' g++ -o omptbx/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> /<>/omptbx/ext.cpp Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/array_family/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/array_family/ext.cpp g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/array_family/flex_rstbx_arrays.cpp g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' g++ -o rstbx/bandpass/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/bandpass/src -I/<>/rstbx/bandpass/src -Irstbx/bandpass/include -I/<>/rstbx/bandpass/include /<>/rstbx/bandpass/ext.cpp g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lomptbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/bpcx/src -I/<>/rstbx/bpcx/src -Irstbx/bpcx/include -I/<>/rstbx/bpcx/include /<>/rstbx/bpcx/detector_model/detector_model_ext.cpp In file included from /<>/rstbx/bandpass/ext.cpp:10: /<>/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /<>/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/rstbx/bandpass/parameters.h:3: /<>/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /<>/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /<>/rstbx/bandpass/ext.cpp:11: /<>/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /<>/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /<>/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /<>/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /<>/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /<>/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /<>/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /<>/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /<>/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /<>/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /<>/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /<>/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /<>/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /<>/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /<>/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /<>/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /<>/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /<>/rstbx/bandpass/ext.cpp:616:87: required from here /<>/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /<>/rstbx/bandpass/ext.cpp:620:78: required from here /<>/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o lib/mmtbx_tls_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_utils_ext.so.0 mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so.0'->'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/bpcx/src -I/<>/rstbx/bpcx/src -Irstbx/bpcx/include -I/<>/rstbx/bpcx/include /<>/rstbx/bpcx/detector_model/sensor.cpp /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /<>/rstbx/bandpass/ext.cpp:4: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec2.h:4, from /<>/rstbx/bpcx/detector_model/sensor.h:3, from /<>/rstbx/bpcx/detector_model/sensor.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/<>/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/<>/rstbx/diffraction/fastbragg/include /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/<>/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/<>/rstbx/diffraction/fastbragg/include /<>/rstbx/diffraction/fastbragg/fastbragg.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/rstbx/diffraction/fastbragg/fastbragg.h:8, from /<>/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4: /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o rstbx/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/src -I/<>/rstbx/src -Irstbx/include -I/<>/rstbx/include /<>/rstbx/ext.cpp g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' In file included from /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/rstbx/diffraction/fastbragg/fastbragg.h:8: /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /<>/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here /<>/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /<>/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /<>/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here /<>/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o rstbx/indexing_api/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/indexing_api/src -I/<>/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/<>/rstbx/indexing_api/include /<>/rstbx/indexing_api/ext.cpp In file included from /<>/scitbx/fftpack/real_to_complex.h:4, from /<>/rstbx/dps_core/directional_fft.h:5, from /<>/rstbx/dps_core/dps_core.h:11, from /<>/rstbx/indexing_api/indexing_api.h:9, from /<>/rstbx/indexing_api/ext.cpp:4: /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/dxtbx/src/dxtbx/model/panel.h:22, from /<>/dxtbx/src/dxtbx/model/detector.h:25, from /<>/rstbx/indexing_api/indexing_api.h:11: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /<>/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /<>/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /<>/dxtbx/src/dxtbx/model/panel.h:367:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 367 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /<>/dxtbx/src/dxtbx/model/panel.h:368:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 368 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /<>/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /<>/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' g++ -o rstbx/apps/integration_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/apps/src -I/<>/rstbx/apps/src -Irstbx/apps/include -I/<>/rstbx/apps/include /<>/rstbx/apps/integration_ext.cpp g++ -o lib/rstbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_array_family_flex_ext.so.0 rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' g++ -o rstbx/simage/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/simage/src -I/<>/rstbx/simage/src -Irstbx/simage/include -I/<>/rstbx/simage/include /<>/rstbx/simage/ext.cpp g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so.0'->'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/simulation/src -I/<>/rstbx/simulation/src -Irstbx/simulation/include -I/<>/rstbx/simulation/include /<>/rstbx/simulation/ext.cpp In file included from /<>/spotfinder/core_toolbox/libdistl.h:81, from /<>/spotfinder/core_toolbox/distl.h:14, from /<>/rstbx/apps/stills/simple_integration.h:9, from /<>/rstbx/apps/integration_ext.cpp:3: /<>/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /<>/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ /<>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /<>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::null_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:320:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p>/rstbx/apps/stills/simple_integration.h: In member function ‘scitbx::af::shared > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /<>/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort>/rstbx/apps/stills/simple_integration.h:378:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort>/rstbx/apps/stills/simple_integration.h:395:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:495:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort>/rstbx/apps/stills/simple_integration.h:550:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::integration_proper_fast(const scitbx::af::flex_int&, scitbx::af::shared >, scitbx::af::shared >, scitbx::af::shared >)’: /<>/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i>/rstbx/apps/stills/simple_integration.h:631:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k>/rstbx/apps/stills/simple_integration.h:638:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k>/rstbx/simage/ext.cpp:2: /<>/rstbx/simage/image_simple.hpp: In member function ‘rstbx::simage::image_simple& rstbx::simage::image_simple::compute(const cctbx::uctbx::unit_cell&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /<>/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /<>/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /<>/rstbx/simage/image_simple.hpp:10: /<>/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /<>/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /<>/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm In file included from /<>/rstbx/simulation/ext.cpp:11: /<>/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /<>/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /<>/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /<>/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount>/rstbx/simulation/sim_xfel1.h:230:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /<>/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so.0'->'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/usr/include/python3.12 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -Irstbx/symmetry/constraints/src -I/<>/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/<>/rstbx/symmetry/constraints/include /<>/rstbx/symmetry/constraints/ext.cpp In file included from /<>/scitbx/array_family/shared_plain.h:307, from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7, from /<>/rstbx/simulation/sim_xfel1.h:4: /<>/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::vec3]’: /<>/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = cctbx::crystal_orientation]’: /<>/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const cctbx::crystal_orientation&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = cctbx::crystal_orientation]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_ext.cpp Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_grid.cpp g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_bool.cpp g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so.0'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_size_t.cpp /<>/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /<>/scitbx/array_family/boost_python/flex_ext.cpp:367:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 367 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_ext.cpp:375:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 375 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_ext.cpp:383:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 383 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/ref.h:4, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/selections.h:4, from /<>/scitbx/array_family/boost_python/flex_ext.cpp:2: /<>/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_ext.cpp:544:7: required from here /<>/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /<>/scitbx/array_family/boost_python/flex_ext.cpp:10: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:84:46: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:85:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:86:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:90:37: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:91:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:96:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:100:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:101:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:102:55: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:105:58: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:106:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:110:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:112:46: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:115:49: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:117:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:122:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:127:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:128:52: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:129:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:131:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:132:63: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:133:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:134:49: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:135:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:136:52: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:137:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:139:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:141:49: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:143:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:146:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:153:64: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:154:56: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:156:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ /<>/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_bool.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /<>/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /<>/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_size_t.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_int.cpp In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_int.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = signed char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = signed char]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = short int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_float.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_float.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_double.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_double.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /<>/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /<>/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /<>/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i>/scitbx/array_family/boost_python/flex_double.cpp:454:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/boost_python/flex_double.cpp:7: /<>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here /<>/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i>/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /<>/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here /<>/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp In file included from /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /<>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here /<>/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i>/scitbx/matrix/norms.h:16:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_inf(const scitbx::af::const_ref >&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here /<>/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i>/scitbx/matrix/norms.h:34:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 34 | for (int j=0; j>/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_frobenius(const scitbx::af::const_ref >&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here /<>/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_complex_double.cpp g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_std_string.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_random.cpp In file included from /<>/scitbx/array_family/boost_python/flex_std_string.cpp:3: /<>/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /<>/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /<>/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /<>/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/array_family/boost_python/flex_std_string.cpp:1: /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438, from /usr/include/c++/13/functional:49, from /usr/include/boost/config/no_tr1/functional.hpp:21, from /usr/include/boost/function/detail/prologue.hpp:15, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /<>/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_sort.cpp g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_weighted_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_mean_and_variance.cpp g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_median.cpp In file included from /<>/scitbx/array_family/boost_python/flex_median.cpp:2: /<>/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /<>/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ /<>/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ /<>/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here /<>/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_linear_interpolation.cpp g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i>/scitbx/array_family/boost_python/flex_vec2_double.cpp:129:28: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 129 | for(std::size_t j=0;j>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /<>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec2]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec2*; _Size = long unsigned int; _Tp = scitbx::vec2]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::sym_mat3]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::sym_mat3*; _Size = long unsigned int; _Tp = scitbx::sym_mat3]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec2; AccessorType = scitbx::af::flex_grid<>]’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::sym_mat3; AccessorType = scitbx::af::flex_grid<>]’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::sym_mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/array_family/accessors/flex_grid.h:4, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:3: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/loops.cpp g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/show_sizes.cpp In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:15, from /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:3: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] In file included from /<>/scitbx/array_family/boost_python/flex_wrapper.h:18: /<>/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’: /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i>/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /<>/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ /<>/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here /<>/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::mat3]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::mat3*; _Size = long unsigned int; _Tp = scitbx::mat3]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include /<>/scitbx/array_family/boost_python/numpy_bridge.cpp /<>/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::mat3; AccessorType = scitbx::af::flex_grid<>]’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/shared_ext.cpp In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/flex_types.h:7: /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/function/function_base.hpp:33, from /usr/include/boost/function/detail/prologue.hpp:18, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::af::tiny; AccessorType = scitbx::af::flex_grid<>]’: /<>/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/boost/move/detail/type_traits.hpp:33, from /usr/include/boost/move/traits.hpp:31, from /usr/include/boost/move/utility.hpp:30, from /usr/include/boost/optional/optional.hpp:59, from /usr/include/boost/optional.hpp:15, from /<>/scitbx/array_family/ref_reductions.h:8, from /<>/scitbx/array_family/tiny.h:5, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/scitbx/array_family/boost_python/shared_wrapper.h:12, from /<>/scitbx/array_family/boost_python/shared_ext.cpp:3: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/error.h:16, from /<>/scitbx/array_family/versa_plain.h:4, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:4: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i>/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘scitbx::af::versa > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/cubicle_neighbors_ext.cpp g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/fftpack/boost_python/fftpack_ext.cpp g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm -lboost_numpy312 /usr/bin/ld: scitbx/array_family/boost_python/numpy_bridge.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:50:(.text+0x638): warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:51:(.text+0x64a): warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/array_family/boost_python/numpy_bridge.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:65:(.text+0x66c): warning: fegetexcept is not implemented and will always fail In file included from /<>/scitbx/fftpack/gridding.h:5, from /<>/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/cubicle_neighbors_ext.cpp:3: /<>/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /<>/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here /<>/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /<>/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /<>/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /<>/scitbx/cubicle_neighbors.hpp:4: /<>/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /<>/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ /<>/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here /<>/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/glmtbx/boost_python/ext.cc Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/graphics_utils/ext.cpp g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/iso_surface/iso_surface_ext.cpp g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm -lboost_numpy312 Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/lbfgs/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 -I/<>/fable /<>/scitbx/lbfgs/ext.cpp g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/fable scitbx/lbfgs/lbfgs_fem.cpp In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/linalg_ext.cpp g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/matrix.cpp g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/cholesky.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb.h:8, from /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>/scitbx/lbfgsb.h: In instantiation of ‘scitbx::lbfgsb::minimizer::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here /<>/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/householder.cpp g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/svd.cpp g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/eigensystem.cpp g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5, from /<>/scitbx/sym_mat3.h:4, from /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/lstbx/boost_python/lstbx_ext.cpp g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/lstbx/boost_python/normal_equations.cpp g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/math_ext.cpp g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/basic_statistics.cpp g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm /usr/bin/ld: scitbx/linalg/boost_python/cholesky.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:50:(.text+0x526): warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:51:(.text+0x538): warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/linalg/boost_python/cholesky.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:65:(.text+0x55a): warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/gaussian.cpp g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/golay.cpp g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/minimum_covering_sphere.cpp g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm /usr/bin/ld: scitbx/lstbx/boost_python/normal_equations.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:50:(.text+0x8b6): warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:51:(.text+0x8c8): warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/lstbx/boost_python/normal_equations.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:65:(.text+0x8ea): warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/principal_axes_of_inertia.cpp g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/row_echelon.cpp g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/tensor_rank_2.cpp g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/chebyshev.cpp g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/icosahedron.cpp g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection 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-o scitbx/math/boost_python/interpolation.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/interpolation.cpp g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/tetrahedron.cpp g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/math/boost_python/angle_derivative.cpp g++ -o scitbx/minpack/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/minpack/ext.cpp In file included from /<>/scitbx/error.h:16, from /<>/scitbx/minpack/raw.h:4, from /<>/scitbx/minpack/levenberg_marquardt.h:4, from /<>/scitbx/minpack/ext.cpp:4: /<>/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /<>/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ g++ -o scitbx/r3_utils_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/r3_utils_ext.cpp g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/random/boost_python/random_ext.cpp g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/random/boost_python/basic_distributions.cpp g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/rigid_body/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/rigid_body/ext.cpp g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/vector.cpp g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/matrix.cpp In file included from /<>/scitbx/array_family/tiny_plain.h:6, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/rotr3.h:4, from /<>/scitbx/rigid_body/spatial_lib.h:4, from /<>/scitbx/rigid_body/featherstone.h:4, from /<>/scitbx/rigid_body/tardy.h:6, from /<>/scitbx/rigid_body/ext.cpp:14: /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /<>/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ /<>/scitbx/rigid_body/ext.cpp:24:49: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/versa_matrix.h:6, from /<>/scitbx/rigid_body/spatial_lib.h:5: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /<>/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ /<>/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ /<>/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ /<>/scitbx/rigid_body/ext.cpp:120:46: required from here /<>/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/scitbx/error.h:16, from /<>/scitbx/mat3.h:5: /<>/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /<>/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ /<>/scitbx/rigid_body/ext.cpp:151:13: required from here /<>/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /<>/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:643:5: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /<>/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ /<>/scitbx/rigid_body/joint_lib.h:271:5: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /<>/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:313:5: required from here /<>/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /<>/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ /<>/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ /<>/scitbx/rigid_body/joint_lib.h:313:5: required from here /<>/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/versa_matrix.h:4: /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/memory:69, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/scitbx/boost_python/array_as_list.h:4, from /<>/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /<>/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:312:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 312 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/shared_plain.h:307: /<>/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /<>/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/approx_equal.cpp g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/random.cpp g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/lu_factorization.cpp g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/sparse/boost_python/sparse_ext.cpp g++ -o scitbx/stl/map_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/stl/map_ext.cpp g++ -o scitbx/stl/set_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/stl/set_ext.cpp In file included from /<>/scitbx/stl/set_ext.cpp:1: /<>/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /<>/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/stl/set_wrapper.h:4: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ /<>/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/set_ext.cpp:9:32: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ /<>/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/set_ext.cpp:10:35: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o scitbx/stl/vector_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/stl/vector_ext.cpp g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/stl/vector_wrapper.h:4, from /<>/scitbx/stl/vector_ext.cpp:2: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/vector_ext.cpp:10:35: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/vector_ext.cpp:11:33: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ /<>/scitbx/stl/vector_ext.cpp:14:50: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/suffixtree/boost_python/object_extensions.cpp g++ -o scitbx/wigner/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/wigner/ext.cpp g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/ab_initio/ab_initio_ext.cpp g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/array_family/af_ext.cpp g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/affine.cpp g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/constraints_ext.cpp Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/direction.cpp g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/occupancy.cpp g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/reparametrisation.cpp g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/rigid.cpp g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/same_group.cpp g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/scaled_adp.cpp g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/shared.cpp g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/special_position.cpp g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/boost_python/least_squares_ext.cpp g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/boost_python/weighting_schemes.cpp g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/boost_python/least_squares.cpp g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/restraints/boost_python/origin_fixing.cpp g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/refinement/restraints/boost_python/restraints_ext.cpp Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o smtbx/stl/map_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/stl/map_ext.cpp g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/structure_factors/direct/boost_python/ext.cpp g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/smtbx/structure_factors/direct/boost_python/standard_xray.cpp g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/array_family/src -I/<>/spotfinder/array_family/src -Ispotfinder/array_family/include -I/<>/spotfinder/array_family/include /<>/spotfinder/array_family/flex_ext.cpp g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/array_family/src -I/<>/spotfinder/array_family/src -Ispotfinder/array_family/include -I/<>/spotfinder/array_family/include /<>/spotfinder/array_family/flex_distl_spot.cpp g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm /usr/bin/ld: smtbx/refinement/restraints/boost_python/origin_fixing.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:50:(.text+0x426): warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:51:(.text+0x438): warning: feenableexcept is not implemented and will always fail /usr/bin/ld: smtbx/refinement/restraints/boost_python/origin_fixing.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:65:(.text+0x45a): warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/core_toolbox/boost_python/src -I/<>/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/<>/spotfinder/core_toolbox/boost_python/include /<>/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm /usr/bin/ld: smtbx/refinement/boost_python/least_squares.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:50:(.text+0x173a): warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:51:(.text+0x174c): warning: feenableexcept is not implemented and will always fail /usr/bin/ld: smtbx/refinement/boost_python/least_squares.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:65:(.text+0x176e): warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so.0'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/core_toolbox/boost_python/src -I/<>/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/<>/spotfinder/core_toolbox/boost_python/include /<>/spotfinder/diffraction/geometry.cpp g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/dxtbx_toolbox/src -I/<>/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/<>/spotfinder/dxtbx_toolbox/include /<>/spotfinder/dxtbx_toolbox/ext.cpp g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/annlib_adaptbx/include -I/<>/.pybuild/cpython3_3.12/build_/annlib_adaptbx/include -I/<>/dxtbx/src -I/usr/include/python3.12 -Ispotfinder/core_toolbox/boost_python/src -I/<>/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/<>/spotfinder/core_toolbox/boost_python/include /<>/spotfinder/core_toolbox/boost_python/hough_ext.cpp g++ -o lib/spotfinder_distltbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_distltbx_ext.so.0 spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so.0'->'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/mmtbx/masks/tst_mask.cpp g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so.0'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/usr/include/python3.12 /<>/scitbx/array_family/boost_python/regression_test_ext.cpp g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_accessors.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/tst_accessors.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/tst_accessors.cpp:15: /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /<>/scitbx/array_family/tst_accessors.cpp:127:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /<>/scitbx/array_family/tst_accessors.cpp:145:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /<>/scitbx/array_family/tst_accessors.cpp:172:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /<>/scitbx/array_family/tst_accessors.cpp:202:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:248:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:280:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:326:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] /<>/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /<>/scitbx/array_family/tst_accessors.cpp:371:11: required from here /<>/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] In file included from /usr/include/boost/assert.hpp:58, from /usr/include/boost/smart_ptr/shared_ptr.hpp:25, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/list.hpp:10, from /<>/scitbx/boost_python/container_conversions.h:4, from /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:7: /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] /<>/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /<>/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ /<>/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here /<>/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_1.cpp g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_2.cpp g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /<>/scitbx/array_family/tst_af_1.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_3.cpp /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:619:52: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ /<>/scitbx/array_family/tst_af_1.cpp:621:46: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::shared_plain]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:624:48: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/tst_af_2.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::shared]’: /<>/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ /<>/scitbx/array_family/tst_af_1.cpp:629:42: required from here /<>/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /<>/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ /<>/scitbx/array_family/tst_af_1.cpp:635:64: required from here /<>/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /<>/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ /<>/scitbx/array_family/tst_af_1.cpp:637:58: required from here /<>/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /<>/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/small_plain_apply.h:15, from /<>/scitbx/array_family/tst_af_1.cpp:3: /<>/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /<>/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ /<>/scitbx/array_family/tst_af_1.cpp:619:52: required from here /<>/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_3.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_4.cpp g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python312 -lm -lboost_numpy312 Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_5.cpp g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_4.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_mat3.cpp /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_5.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/array_family/tst_mat3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_optional_copy.cpp g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_5.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_rectangular_full_packed.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/tst_optional_copy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_ref_matrix_facet.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/accessors/rectangular_full_packed.h:3, from /<>/scitbx/array_family/tst_rectangular_full_packed.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /<>/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i>/scitbx/array_family/tst_rectangular_full_packed.cpp:53:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 53 | for(int j=0; j>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_sym_mat3.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_sym_mat3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tst_ref_matrix_facet.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_unsigned_float_arithmetic.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/scitbx/array_family/tst_sym_mat3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_ref_matrix_facet.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/usr/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_vec3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/array_family/tiny_algebra.h:14, from /<>/scitbx/array_family/tst_unsigned_float_arithmetic.cpp:3: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/error/tst_error.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/error -I/<>/scitbx/error /<>/scitbx/error/tst_error.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/array_family/tst_vec3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_sym_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/fftpack/timing/fftpack_timer.cpp g++ -o scitbx/error/tst_error -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/fftpack/timing/test0.cpp g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -I/<>/fable scitbx/lbfgs/sdrive_fem.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/tiny_types.h:4, from /<>/scitbx/fftpack/factorization.h:4, from /<>/scitbx/fftpack/complex_to_complex.h:4, from /<>/scitbx/fftpack/timing/fftpack_timer.cpp:6: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/tiny_types.h:4, from /<>/scitbx/fftpack/factorization.h:4, from /<>/scitbx/fftpack/complex_to_complex.h:4, from /<>/scitbx/fftpack/complex_to_complex_3d.h:4, from /<>/scitbx/fftpack/timing/test0.cpp:3: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/io.hpp:8, from /<>/fable/fem/close_chain.hpp:4, from /<>/fable/fem/common.hpp:4, from /<>/fable/fem/read.hpp:4, from /<>/fable/fem/major_types.hpp:6, from /<>/fable/fem.hpp:10, from /<>/.pybuild/cpython3_3.12/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /<>/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /<>/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /<>/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /<>/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/fable/fem/utils/string_to_double_fmt.hpp:4, from /<>/fable/fem/read.hpp:9: /<>/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /<>/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /<>/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /<>/fable/fem/variant.hpp:5, from /<>/fable/fem/major_types.hpp:7: /<>/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /<>/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /<>/fable/fem/major_types.hpp:8: /<>/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /<>/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgs/tst_lbfgs.cpp g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lomptbx -lm g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgsb/dev/driver1.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver1.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/tst_lbfgs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgsb/dev/driver2.cpp g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lomptbx -lm In file included from /<>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include /<>/scitbx/lbfgsb/dev/driver3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver2.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver3.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/scoped_array.hpp:13, from /usr/include/boost/scoped_array.hpp:13, from /<>/scitbx/array_family/ref.h:10: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:25:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 25 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here /<>/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j>/scitbx/error.h:16, from /<>/scitbx/serialization/base_256.h:2, from /<>/scitbx/math/floating_point_epsilon.h:4, from /<>/scitbx/lbfgsb/raw.h:5: /<>/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /<>/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ /<>/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here /<>/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /<>/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /<>/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/math/tests/tst.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/math/tests -I/<>/scitbx/math/tests /<>/scitbx/math/tests/tst.cpp g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_cholesky.cpp g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_givens.cpp g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_householder.cpp g++ -o scitbx/math/tests/tst -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_svd.cpp g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/serialization -I/<>/scitbx/serialization /<>/scitbx/serialization/tst_base_256.cpp g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Iscitbx/sparse/tests -I/<>/scitbx/sparse/tests /<>/scitbx/sparse/tests/tst_sparse.cpp g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system /usr/bin/ld: scitbx/matrix/tests/tst_cholesky.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:50:(.text+0x3b8): warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:51:(.text+0x3ca): warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/matrix/tests/tst_cholesky.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': /usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2/boost_adaptbx/floating_point_exceptions.h:65:(.text+0x3ec): warning: fegetexcept is not implemented and will always fail g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/cctbx-2023.12+ds2+~3.17.0+ds1-4build2 -Wdate-time -D_FORTIFY_SOURCE=3 -I/<> -I/<>/.pybuild/cpython3_3.12/build_/include -I/<> -I/usr/include -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_special_position.cpp g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/riscv64-linux-gnu -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system scons: done building targets. usr+sys time: 513.53 seconds wall clock time: 317 minutes 58.40 seconds (19078.40 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h # cp all extensions into the python build directory # special case for an extension used during test dh_auto_build -- -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" pybuild --build -i python{version} -p 3.12 -s custom "--build-args=cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" I: pybuild base:311: cp -f '/<>/.pybuild/cpython3_3.12/build'_/lib/*_ext.so '/<>/.pybuild/cpython3_3.12/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/<>/.pybuild/cpython3_3.12/build' # cp the dxtbx pybind11 extension at the right place. dh_auto_build -- -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" pybuild --build -i python{version} -p 3.12 -s custom "--build-args=cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" I: pybuild base:311: cp -f '/<>/.pybuild/cpython3_3.12/build'_/lib/dxtbx_flumpy.so '/<>/.pybuild/cpython3_3.12/build' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars rm -fr -- debian/.debhelper/generated/libcctbx0/ debian/libcctbx0/ debian/tmp/ debian/.debhelper/generated/libcctbx-dev/ debian/libcctbx-dev/ debian/.debhelper/generated/python3-cctbx/ debian/python3-cctbx/ rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' # install the cctbx python modules dh_auto_install install -m0755 -d /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.12 --dest-dir /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root '/<>/debian/tmp' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python3.12 creating /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/tst_spherical_bessel_jn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/tst_direct_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dssp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_attenuation_coefficient_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_xplor_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bpcx_detector_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgsb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_building_loop_closure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_alignment_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_bcr_bcr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/view_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/hydrogens_button.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/interactive_edit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/validation_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/ligand_checklist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/simple_zoom_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/watch_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/xmlrpc_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rotamer_fit_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_r3_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_structure_factors_direct_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_cablam_align_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_imageset_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_wigner_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_asu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_iso_surface_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_observations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/omptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/omptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_bulk_solvent_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_french_wilson_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_cubicle_neighbors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_hough_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_tuple_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_scaling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_xray_scattering_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_uctbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_icsd_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_fonts_ucs_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_ellipsoids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/quadrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_scene.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/extract_opengl_specs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/glu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/try_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewers_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_defines_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl_managed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_cube.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_functions_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_motion_on_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_leapmotion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_ellipsoids_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/iotbx_cif_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bandpass_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment copying /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/kick.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/mtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/pair_interaction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_05.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hpdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/bond_angle_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/metal_coordination_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/histidines.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_base_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/LinkedResidues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/sf4_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/altloc_weighting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_svl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/check_cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_hpdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/testing_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/sample_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/all_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/rotamer_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_polygon_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ensemble_ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/map_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/super.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development.aev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/perigee.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rama_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/distance_difference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_suspicious_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/get_related_ensemble.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_H_cl_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/verify_mon_lib_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_rotarama_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_diff_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/search_pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fetch_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compute_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_static_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ssm_rmsd_for_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_cablam_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_peaks_holes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer_score.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_r_factors_by_shell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/f000.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reciprocal_space_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/models_as_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mon_lib_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_residue_in_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cdl_lookup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/estimate_bijvoet_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_model_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/kinemage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cif_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chains_as_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maximum_entropy_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_view_ad_hoc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fake_f_obs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_tls_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/monomer_library.comp_as_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/r_factor_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compare_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/partial_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_model_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/anneal_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_screen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/simulate_low_res_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sisa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/strip_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/apply_ncs_to_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/plot_weights.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm12.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm15.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/decompose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/ladp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_h_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_ccs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_no_cryst1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_statistics_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_scattering_type_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_special_term_at_end.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_loop_closure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_get_t_scheme.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_refinement_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_isomorphous_difference_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_type_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_dynamics_cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_utils_merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_dedeuterate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_get_vdw_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_coeffs_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_command_line_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geo_min_restraints_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_alignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ligand_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_flipping_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ss_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_metal_link_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cis_trans_peptide_link.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sequence_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/make_fake_anomalous_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ml_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_apply_cif_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search_flips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_probe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_arrows_on_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_models_to_from_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_maps_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_schrodinger_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_chain_break.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_psi_phi_extraction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/parameterization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/build_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/riding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/find.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/reduce_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_minimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/tst_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rolling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_scoring.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_fit_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/weights_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/adp_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/print_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/targets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_real_space_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/energy_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/flip_peptide_side_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/individual_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/explode_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_small_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/orca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/inspect_tardy_trajectory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/wx_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_occupancy_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/proq2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/resolve_resources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/orca_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_restraints_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/c_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/external.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/mopac_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/base_qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/ensemble_cd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_sa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/parallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/regular_helix_definitions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/how_to.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_fingerprints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/kinemage_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_do_flips_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/run_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_symmetry_SS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_find_region_max_value.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_keep_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_arguments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comprehensive_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ensembles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/convert_from_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbd_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_PRO_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/convert_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_others_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/fav_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/find_ss_from_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_insertion_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/proteins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/nucleic_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/secondary_structure_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_segid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_ga.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_optimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/max_like_non_uniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_max_lik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/rip_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage_twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sir_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/make_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_rejection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absence_likelihood.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_sigmaa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/massage_twin_detwin_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pre_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/siras_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/random_omit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/thorough_outlier_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/basic_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absolute_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/ta_alpha_beta_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sigmaa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twmad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pair_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/data_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_symmetry_axis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/dump_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/tst_classifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/identify.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_approx_zn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca_svm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/halides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip_tasks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/InteractionGraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Optimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Movers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/cif_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/f_model_all_scales.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/kbu_refinery.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_aniso_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/altloc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/clash.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/asa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/sphere_surface_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/topology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/shared_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/twin_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/probabalistic_detwinning.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/find_peaks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/cartesian_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/tncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/grid2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/rotatable_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/tst_switch_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/ntc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/tst_ias.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/AtomTypes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/tst_mmtbx_probe_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/Helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_carbo_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/hydrogen_restrictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_protein_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_chiral_values.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_neutron_distance.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/bondlength_defaults.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_mixins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_correct_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_superpose_ideal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_all_cif_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_paral_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conformation_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_metal_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_chg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conv_v2_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/correct_hydrogen_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_deuterium_terminii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/chemistry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_basics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/hierarchy_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/electrons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/rdkit_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_asu_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/custom_gm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/ccd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/berkeley_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/starting_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/lifi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/invariant_domain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenamedefs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninput.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/dualparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/mainchain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitealyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/diangle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/transdent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/tst_hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/skew_kurt_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/data_filtering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/sidechain_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/nqh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/n_dim_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval_deprecated.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/cspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/xtc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/rayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/cspad_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/jungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/construct_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/energy_scan_notch_finder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/max_like.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_graph_structure_comparison_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/chimerax.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/qttbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_min_cut_max_flow_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_dtrek_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_f_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_wildcard_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_adp_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/omptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_rigid_body_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_minpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reduce_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dynamics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_sparse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_cartesian_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/make_install_HKLviewer_ChimeraX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/hklview.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/compare_datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/visualize_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/multiplicity_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/model_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/qttbx.view_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/jsview_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklviewer_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/display2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/cmdlineframes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklview_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt_chromium_check.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/default_user_preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtricorder_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtriage_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/map_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/xray_structure_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_hklinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_websocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tests_HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_maximum_clique_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_fftpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/split_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/simulate_partial_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_per_frame_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_42.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_intensity_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_visualise_orientations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/singleframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/cspad_cbf_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/metrology2phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/get_next_trial_id.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_mpi_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_unpickler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/print_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/subtract_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_bar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_stream_to_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/upload_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/FEE_average_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pbs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trumpet_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/overlay_spectra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/view_pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_calibdir2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/striping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_display_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_generate_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_psana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cctbx_integration_pickle_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xfel_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cspad_pinwheel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cbfheader2slaccalib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cbf_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_optical2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/find_highres_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/runs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/mpi_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/h5_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_extractor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_slaccalib2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/beamcenter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jungfrau_metrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_json_to_cbf_def.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_trials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/smooth_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_apply_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/auto_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/detector_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pickle2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_detector_format_versions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/stills_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/plot_to_subpixel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/launch_fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mar_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_dials_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/calc_gain_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pyana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/list_db_metadata.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_cbf_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/or_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trial_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_plotcv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jobs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/recompute_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/riso.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xmerge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/filter_experiments_by_rmsd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/panel_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/flatfile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/quadrant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/split_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/reflection_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_file_matcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/cctbx_xfel_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_pickle_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/kapton_2019_correction_frame_frame_plugin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/image_pickle_locator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_updated_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/test_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/Cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/SingleFrame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/status_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/trials_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/wx_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/completeness_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/strong_zulu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/trumpet_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/einsle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/average_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_hybrid_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/merging_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cxi_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_powder_arcs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_legacy_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/spectra_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/display_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_pulnix_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hdf5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump_bitmap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_illumination_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hitfind.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_daq_status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_code.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_faster_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/hitfinder_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_ledge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/cspad_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/average_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_image_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/parse_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/common_mode.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/rayonix_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_xes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/integrate_image_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/data_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/read_geom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_from_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/write_composite_image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_bg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_c2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_hit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/test_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/fit_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/run_stats_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/tooltips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/timeit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/submission_tracker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/rungroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/frame_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/job.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dxtbx_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/tag.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/merging_log_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/xfel_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/task.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/shifter_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_isoform_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/xfel_gui_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/print_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_reflection_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/ui_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/get_hit_timestamps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/phil_patch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/jf16m_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/sync_jf16m_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/mono_treatment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/max_like_pos_neg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/solve_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/xfel_small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot_prep.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/candidate_cells.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/powder_from_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/write_orientation_arrows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/powder_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/small_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/multiproc_temp_parame_opt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/parameter_optimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/components.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/jf4m_geom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/phil_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/general_fcalc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/mpi_integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/absorption.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/merger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/group_reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/lunus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/experiment_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_loader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_load_calculator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_lister.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/unit_cell_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/experiment_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/beam_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/load_balancer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/reflection_table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/resolution_binner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/crystal_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/application.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/worker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_helper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_abc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/token_passing_left_right.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/df_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/aux_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/polarization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym_tranch_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/compare_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_sr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ha14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ev11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/memory_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/data_counter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/reflection_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/experiment_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/cell_listing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/predictions_to_edges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/error_modeler_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/reduced_chi_squared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/errors_from_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_fs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/psana_cctbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/exercise_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/mmtbx_pair_interaction_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_ab_initio_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/annlib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_max_lik_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_multipolar_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_dials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_bcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/adsc_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/bcsb_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/multipart_encoder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/pilatus_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/general_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/specific_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_client_push.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_is_alive.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/imagefiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/sweep_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/find_active_area.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/sphere_formulae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/close_spots_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/stats_distl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_run3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/wrappers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/method2_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice_nztt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/spotreporter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_flumpy.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_dmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_den_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_henke_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/heavy_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/segmentedctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/symmetry_dialog.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/inspect_r_free_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/wxpython.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plot_anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/show_file_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/anomalous_differences_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/loggraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/listeditor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/process_control.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/sequence_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/layout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/mtz_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/path_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/windows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/metallicbutton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/misc_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/bitmaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/qstat_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/misc_ctrls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/boolctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tribool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/ints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floatctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/array_label.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/symop.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/numbers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/text_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/simple_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice_multi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/intctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/space_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/icons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/checklistctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/custom_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/adp_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/wx4_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/browser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/info_panels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/ensemble_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon_db_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/boost_python_meta_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_python_hybrid_times_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ramachandran_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/fit_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/tst_coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_ewald_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_predict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/drivers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_wrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/pixels3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/results_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/integration_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/ersatz_misset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2a.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions_idx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/compare_mosflm_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/instrument_specifics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/tst_detector_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/slip_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/example_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_pdf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/tst_xfel1_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/uc_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/ring_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/tile_generation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/pyslip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/score_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_viewer_image_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/example_frame_plugin_hidden.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/phil_preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/scope.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/g_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/parameter_reduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/sgtbx_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/subgroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/spot_shape.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/speckfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/stats_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/pixel_spread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/oscillation_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/tst_sublattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_auto_monoscan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_dataset1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/do_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/nearest_neighbor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/test_dps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/force_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/slip_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/dials_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/stills_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/simple_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/dual_resolution_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/spot_markup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/silicon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/integrate_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_labelit_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/refine_uc_cr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_spotfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/tst_iotbx_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/constrainment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/zuoreduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/cell_assessment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/lepage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/cma_es_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_scales_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/map_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_ccp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_loft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_get_percentile_cutoffs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_target_and_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_peak_volume_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_asymmetric_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_sharpening.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/io_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/dispatcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/replay.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/frac_cart.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/iotbx_cif_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/browse_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/explore_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/libtbx_help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/guide_to_notation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/web_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jvx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/multiple_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_setting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/wyckoff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/cgi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observation_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/global_counters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradient_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_shelxl_wght_ls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/scatterer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/tst_observations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_henke_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx/dmtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/van_der_waals_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/icsd_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/e_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/neutron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/covalent_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/read_custom_scattering_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/chemical_elements.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/tiny_pse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/formula.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/sasaki.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/henke.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_section61_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_cross_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/hydrogen_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/combine_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/format_gaussian_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_approx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_kissel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/rez_rez_grant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/e_scattering_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/attenuation_coefficient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/krivy_gruber_1976.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/reduction_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973_table_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/precession_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/find_reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/form_factor_query.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cctbx_test_nightly.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/space_group_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/structure_factor_timings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/xray_structure.show.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/eltbx.show_fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron copying /<>/.pybuild/cpython3_3.12/build/cctbx/neutron/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wilson_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_expand_to_p1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_krivy_gruber.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_data_manipulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fast_nv1995.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_triplet_generator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_loc_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_aniso_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sphericity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_denominators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_web_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reciprocal_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_lookup_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization_failure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_fast_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_tidy_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_is_periodic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_twin_target.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sf_low_res_accuracy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grouped_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_modifications.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_refine_xray_curvs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pair_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints_cartesian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fcalc_fft_stability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_statistics_graphs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_site_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_merge_equivalents.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_asu_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_double_step_filtration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_amplitude_normalisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity_allsym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/quartz_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/reduced_cell_two_folds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_distances_using_cpp_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/convert_ccp4_symop_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/neutron_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/steve_collins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/view_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/hirshfeld_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/site_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/location_part.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/getting_started.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/maximum_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/adp_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/map_skewness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_f_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_group_matrices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_consistency_checks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/f_model_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/analyze_adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/change_hand_p31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/lebedev_2005_perturbation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_common_sets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/sub_group_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/list_non_principal_continuous_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/symops_530.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_sys_abs_equiv_space_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/fft_map_electron_density_around_atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_utilities.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/sigma_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/tst_permutations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_levenberg_sparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/task4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_subset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/show_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_cc_half.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_primitive_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_map_to_asu_isym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/auto_linking_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/base_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_proxy_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_angle_derivs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/linking_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/standard_cif_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance copying /<>/.pybuild/cpython3_3.12/build/cctbx/covariance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance copying /<>/.pybuild/cpython3_3.12/build/cctbx/translation_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/adptbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/bravais_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/short_cuts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/cut_plane.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_pg_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sys_abs_equiv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sub_lattice_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/rational_matrices_point_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/symbol_confidence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/plane_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/literal_description.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cif_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/eval_iso_vs_refined.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/pdb_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tardy_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/anharmonic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/multipolar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/fmt_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx76.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_hl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/space_group_option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/structure_factor_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/github.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/cns_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_epsilon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/random_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_cns_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/debug_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/electron_density_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/direct_or_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/approx_amplitude_vs_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/rotation_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks copying /<>/.pybuild/cpython3_3.12/build/cctbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks copying /<>/.pybuild/cpython3_3.12/build/cctbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_covariance_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/exercise_compression.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_emma_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_orientation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_asa_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_validation_ramachandran_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lstbx_normal_equations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_nexus_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simulation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rsr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_gl_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_fonts_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_mosaic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_vector_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_linalg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/py.typed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/load.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/filename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/ref_pickle_double_buffered.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_header.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/install_format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_mask_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image2pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_matching_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/read_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/detector_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/debug_memory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/saturation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/plot_detector_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/display_parallax_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/overload.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_matching_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/depends_on.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_image_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/rotate_and_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/flumpy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_flumpy.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/model_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/parallax_correction.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/multi_axis_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/virtual_panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel_data.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/pixel_to_millimeter.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/ray_intersection.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/compare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/spectrum.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/kappa_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/parallax_correction.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/detector.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan_helpers.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment_list.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/to_from_dict.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/kappa_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pixel_to_millimeter.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/crystal.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/multi_axis_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/panel.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/spectrum.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/model_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pickle_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/beam.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_imageset_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniADSCHF4M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXIS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPetraP14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSER.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVJHSim.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFull.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLSI19_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/README.md -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnNoTS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYmultitile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCDBG.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTileHierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI41.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigaku.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5PAL.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxED.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS12M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCNoDateStamp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecifiedStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullByteOffset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN445.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMV.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI32.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVCMOS1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMRC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerFixedChi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatGatanDM4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerChessID7B2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatEDFALS733.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN915.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXDS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCmlfsom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI71.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixXPP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI51.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauHack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/cbf_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCMultipleDetectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVNOIR.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerPhoton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI7d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixESRF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauExt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCJungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISII.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImageLazy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nxmx_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN905.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatROD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN442.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCEpix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Lambda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMarIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI61.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSNAPSID19.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISIVSpring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPY.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusXXX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMini.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN926.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusTimepix2M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN920.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVTimePix_SU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16MI03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecified.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN457.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatDIP2030b.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Sacla.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaMPCCD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN928.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/nexus_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/image_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus copying /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/detectors.lib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SConscript -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/goniometer_shadow_masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SmarGonShadowMask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python/ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_nexus_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/resolution_corners.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/to_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/datablock.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_model_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/error.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/CMakeLists.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache_controller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/sequence_filenames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_masking_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/ext.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/flumpy.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/imageset_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_clash_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_glu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_decompose_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_hierarchy_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_masking_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_merging_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_rational_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_neutron_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_fp_fdp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg copying /<>/.pybuild/cpython3_3.12/build/fast_linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg copying /<>/.pybuild/cpython3_3.12/build/rstbx_symmetry_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_statistics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_set_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_translation_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reference_coordinate_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_sphere_surface_sampling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_breadth_first_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/std_pair.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/rational.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/tuple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/divide_by_zero.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/inexact.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/int_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/segmentation_fault.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_platform_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/double_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/lcm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/graph_structure_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/min_cut_max_flow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/minimum_cut_enumerate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/breadth_first_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/metric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/connected_component_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/maximum_clique.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/clustering_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/hybrid_times.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_connected_component_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_optimise_amplitudes_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_shelx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_probe_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_chemical_elements_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_ccp4_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_crystal_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/std_pair_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_diffraction_fastbragg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/crystal_symmetry_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/cod_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraint_file_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/pymol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/crystal_symmetry_from_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_dano.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_miller_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/ranges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.join_fragment_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.dump_as_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/csv_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_accumulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/get_pubmed_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_miller_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/biomt_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/blast_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/patterson_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_completion_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif_as_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.print_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz.dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.insert_scale_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/flip_symmetric_amino_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dano_as_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.transfer_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtrix_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/detector_image_as_png.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/explore_metric_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_show_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/build_phil_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_as_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_atoms_by_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/xplor.map.show_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dtrek.to_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_centers_of_mass.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cbf_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/isomorphous_difference_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/poscar_as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.b_factor_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_get_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/effective_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/tst_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/space_group_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/pdb_remarks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/index_fobs_sigma_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_sdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/tst_strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_miller_sort_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_generate_n_char_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_xray_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_selected_hierarchy_flip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_atom_selections_10k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager_wrapping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_all_chain_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_bioinformatics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_segids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_group_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_link_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_cif_inputs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_as_pdb_1atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_copy_select.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_pdb_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_restraints_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_call_consistency.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_ligs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_user_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_without_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_multimodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_id_str.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_symmetry_copies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_to_map_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/prepare_model_for_rsr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/direct_methods_light.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/libtbx_phil_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_split_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/tst_mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/recalculate_phenix_refine_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_shake.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_convert_free_to_work.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/tst_xplormap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/crystal_symmetry_from_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/read_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/write_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/cif_conversions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/import_data_and_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/lexer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/write_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tokens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fcf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/parsers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_lex_parse_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/crystal_symmetry_from_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/blank_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xparm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/read_ascii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/spot_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/integrate_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/gain_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders_depending_on_smtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif_mtz_data_labels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/space_group_dictionary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtrix_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/logfiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/dtrek_symmetry_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/reflnlist_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/crystal_symmetry_from_ref.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_raxis2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_debug_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis_nonsquare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/marIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/macscience.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/noir.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/active_area_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/filters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cspad_detector_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/beam_center_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/hamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/dtrek.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/npy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/bruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxisbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_py_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/image_from_http_request.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_cbf_comp_read_meth.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/detectorbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/saturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/url_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/camera_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/config_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation_max_iv_trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/spot_xy_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_slice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/edf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/real_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/ncs_spec.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/common.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/restraint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/experiment_type.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rna_dna_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_atom_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/tst_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_3_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/nucleic_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hybrid_36.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_290_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_aa_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_rna_dna_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/aa_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_rna_dna_atom_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdbe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdb_v3_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/amino_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_2_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/misc_records_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/crystal_symmetry_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/download.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/cryst1_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/web_service_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/alignment_as_hsearch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/local_blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ncbi_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ebi_wu_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/homologues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/xmlbuild.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pdb_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/fpfm_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/scitbx_glmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_indexing_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_asymmetric_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_array_family_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_hydrogens_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_graphics_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/smtbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/benchmark_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/absolute_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/anom_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_anomrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/fpfdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_direction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_same_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/site.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/origin_fixing_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure copying /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/conftest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors copying /<>/.pybuild/cpython3_3.12/build/smtbx/development.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks copying /<>/.pybuild/cpython3_3.12/build/smtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks copying /<>/.pybuild/cpython3_3.12/build/smtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_boost_thread_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_bruker_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_clustering_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_primitive_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_anharmonic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_distltbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simage_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/log.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cpp_function_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_state.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_fully_buffered_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/forward_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/sge_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/communication.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/transfer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/submission.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/polling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/pbs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/generic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/looping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/remote.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/configure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/simplexml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/mpi4py.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/find_reference_cycles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_multicore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subprocess_with_fixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/objgraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/wait_for_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sphinx_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_all_on_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/seconds_since_the_epoch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_include_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numeric_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_reserved_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_tests_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/nequal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/printenv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/git_avoid_merges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remote_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clean_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_not_show_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_but_no_repr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/analyse_code_comments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_sys_executable.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_bin_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_contains_strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_binary_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/add_from_future_import_division.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remove_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_dist_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_commands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_variable_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_selfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_host_and_user.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/env_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/extract_code_from_txt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_install_script_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_full_command_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_lib_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/parallel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_ends_with.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_dist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/raise_exception_for_testing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/prime_factors_of.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_modules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/check_libcpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_qstat_counts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_source_files_sorted_by_size.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_number_of_processors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/epydoc_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_date_and_time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/any2unix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_in_repositories.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/py_compile_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/ipython_shell_start.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numpy_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_old_style_classes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/path_utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_repository_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_options.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_available_slots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_under_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/chunk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bundle_as_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_untested.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/scons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/easy_qsub.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_pickled_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_module_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_sphinx_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_unzipsfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_pythonpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/dtrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/progress.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/complex_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/console_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/wingide.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/gui_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/try_hello_world_c.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/crossmingw.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileSocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileClient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/StartServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/SocketServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/rpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_base_packages.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/make_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/plus_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_pkg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/regenerate_module_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/write_gui_dispatcher_include.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/installer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/setup_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/package_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/callbacks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_server_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mp_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/stacktrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/cluster_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/philgen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mainthread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/file_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/thread_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/shared_resource.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/parallel_for.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/job_scheduler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/socket_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/process_pool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_representation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pkg_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clusterTests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyplot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/env_config.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/assert_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/file_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/statistics_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/smart_open.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/code_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_runtime_sources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_build_libtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_csh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/fastentrypoints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/introspection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/load_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/except_Exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/xcode_build_phase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/timers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/metric_prefixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/start_print_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/python_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/pytest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_least_squares_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_shared_types_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_miller_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_wavelengths_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_mtz_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cbflib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_metric_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fable_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_integration_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_viewer_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_image_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_sasaki_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/tst_kokkos_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_exafel_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_gpu_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_shoeboxes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel copying /<>/.pybuild/cpython3_3.12/build/simtbx/pixel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/predictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/FormatHDF5AttributeGeometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/forward_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/sim_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gauss_argchk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/attr_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/stage_two_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/device.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/parameter_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/prep_stage2_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/ensemble_refine_launcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/stage_two_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/base_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/psf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_python_streambuf_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_single_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/intrinsics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/fem_include_search_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/show_calls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/insert_write_at_start_of_each_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/split.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/simple_compilation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout_compile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tokenization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_11_script_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_17_script_rfactors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_2_doc_hlo_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_1_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/exercise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_9_doc_maps_boxing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_13_script_ideal_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_8_doc_maps_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_12_script_compare_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_py_from_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_adptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/self_match.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/sample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_symmetry_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/view_fineslices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_path_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plotstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/ray_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/frame_extractor_by_scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/viewstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/comparestats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/iotacc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plot_energy_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/spot_param_visualizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/r_mtz_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/cluster_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/explore_twin_operators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/compare_solution_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/solve_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/prime_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/print_integration_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/mod_isoform_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_leastsqr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_perf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_merge_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_mx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_kmeans.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_covalent_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/determine_unit_cell_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_util_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/cma_es_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/tst_cma_es.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/iotbx_dsn6_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_tiny_pse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_utility_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_optional_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_indexing_api_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_secondary_structure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/smoothing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_reductions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_std_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/operator_functor_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_apply.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_algebras.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib copying /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/shared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/robust_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_robust.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/signal_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/graph_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/dicts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cubicle_neighbors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/tst_iso_surface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/immoptibox_ports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_array_loops.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/rigid_body_refinement_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_grid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/silver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_linear_least_squares_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_recipe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/minimizer_comparisons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/principal_axes_of_inertia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/integrating_a_weighted_sinc_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/chebyshev_lsq_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse copying /<>/.pybuild/cpython3_3.12/build/scitbx/sparse/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse copying /<>/.pybuild/cpython3_3.12/build/scitbx/genetic_algorithm_with_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/svd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/householder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/eigensystem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree_find_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/test_cases_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity_matrix_symbolic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/lefebvre.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike_mom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gumbel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sphere_sphere_intersection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/scale_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/farey.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/zernike_align_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_multivariate_moments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/chebyshev_lsq_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/cubic_spline.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_bessel_zeros.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/besselk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_240_21.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/distributions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_cubic_equation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_dmatrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_uniform_rotation_matrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_resample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_exp_functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_similarity_indices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_angle_derivative.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_r3_rotation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_bessel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_g_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_halton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_orthonormal_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_weighted_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_quadrature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_tetrahedron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/spe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_400.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_100_13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900_ylm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/multiple_superposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/breakpoint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/incremental_SO3_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_2d_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sieve_of_eratosthenes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/tst_normal_equations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/test_problems.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns_solving.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random copying /<>/.pybuild/cpython3_3.12/build/scitbx/random/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/reparams.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/auxiliary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/compulsory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/realsymmetricpseudoinverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/refinebase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/bounds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/min_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/twisted_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/minimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_curvatures.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_func_free_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_mpi_split_evaluator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/direct_search_simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/r3_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/fftpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/golden_section_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/minpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/simplex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/regular_grid_on_unit_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/tst_wigner3j.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/row_echelon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_singular.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/free_motion_reference_impl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_spherical_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion_hard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_simulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/spatial_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/body_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/wx_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_energy_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/make_bundles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/single.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cross_entropy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/differential_evolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx creating /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/iotbx_scalepack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/regression_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_quadrics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_random_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/tst_spherical_bessel_jn.py to tst_spherical_bessel_jn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/tst_direct_summation.py to tst_direct_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/view_refinement.py to view_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/hydrogens_button.py to hydrogens_button.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/interactive_edit.py to interactive_edit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/validation_lists.py to validation_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/ligand_checklist.py to ligand_checklist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/simple_zoom_list.py to simple_zoom_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/watch_file.py to watch_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/xmlrpc_server.py to xmlrpc_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_fonts_ucs_cpp.py to generate_fonts_ucs_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_ellipsoids.py to tst_ellipsoids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/quadrics.py to quadrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_scene.py to wx_scene.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/extract_opengl_specs.py to extract_opengl_specs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/glu.py to glu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer.py to wx_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_example.py to wx_viewer_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/try_imports.py to try_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewers_images.py to wx_viewers_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/images.py to images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_defines_bpl.py to generate_defines_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_fonts.py to tst_fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/viewer_utils.py to viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl_managed.py to gl_managed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_cube.py to wx_cube.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/util.py to util.cpython-312.pyc /usr/lib/python3.12/dist-packages/gltbx/util.py:61: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/fonts.py to fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_functions_bpl.py to generate_functions_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_viewer_utils.py to tst_viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_motion_on_tab.py to wx_motion_on_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_leapmotion.py to wx_viewer_leapmotion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_ellipsoids_test.py to wx_ellipsoids_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl.py to gl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/clashes.py to clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fem.py to fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py to tst_composite_omit_map_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_correlation.py to tst_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py to tst_map_model_cc_and_vals_per_atom_xtal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map.py to tst_composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/correlation.py to correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/kick.py to kick.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py to tst_composite_omit_map_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/composite_omit_map.py to composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/map_model_cc.py to map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/mtriage.py to mtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/pair_interaction.py to pair_interaction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_03.py to tst_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_01.py to tst_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_02.py to tst_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_04.py to tst_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_05.py to tst_05.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py to hpdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py to bond_angle_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py to nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega.py to omega.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py to cdl_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py to tst_cis_c_n_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py to metal_coordination_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py to tst_rna_dna_fragments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/histidines.py to histidines.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega_database.py to omega_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py to investigate_rotamer_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl.py to mcl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py to multi_base_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py to cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py to tst_mcl_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py to hydrogen_bonding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py to multi_residue_cdl_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py to tst_poly_ca_multi_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py to tst_mcl_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py to tst_pH_mechanism.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py to mcl_sf4_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py to cdl_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py to LinkedResidues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rotamers.py to rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py to sf4_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py to tst_rdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py to tst_cdl_esd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py to tst_multi_residue_rna.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py to altloc_weighting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py to pH_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py to density_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py to cdl_svl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py to tst_omega_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py to tst_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py to tst_mcl_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py to check_cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py to rdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py to multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py to tst_cdl_nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py to tst_hpdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py to tst_mutli_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py to testing_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py to sample_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/all_his.py to all_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py to rotamer_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/output.py to output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_polygon_data.py to tst_polygon_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_gui.py to tst_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/msa.py to msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py to ensemble_ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/map_to_water.py to map_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ordered_solvent.py to ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/super.py to super.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development.aev.py to development.aev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/perigee.py to perigee.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/dynamics.py to dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rama_outliers.py to fix_rama_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ions.py to validate_ions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/distance_difference.py to distance_difference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_suspicious_residues.py to show_suspicious_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/get_related_ensemble.py to get_related_ensemble.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_H_cl_app.py to validate_H_cl_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/altloc_remediate.py to altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/verify_mon_lib_data.py to verify_mon_lib_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_structure_factors.py to map_to_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py to rebuild_rotarama_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sort_hetatms.py to sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prune_model.py to prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel_simple.py to fmodel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_diff_map.py to real_space_diff_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/search_pdb_symmetry.py to search_pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_map.py to model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fetch_pdb.py to fetch_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compute_map_coefficients.py to compute_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py to helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_restraints.py to secondary_structure_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rotamer_outliers.py to fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cc_star.py to cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_static_disorder.py to analyze_static_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ssm_rmsd_for_chains.py to ssm_rmsd_for_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rigid_bond_test.py to rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py to rebuild_cablam_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_peaks_holes.py to find_peaks_holes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer_score.py to emringer_score.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maps.py to maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/density_modification.py to density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_comparison.py to map_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py to show_r_factors_by_shell.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py:106: SyntaxWarning: invalid escape sequence '\(' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/f000.py to f000.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ringer.py to ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py to reciprocal_space_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mtz2map.py to mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_box.py to map_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/models_as_chains.py to models_as_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/massage_data.py to massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rank_scale_map.py to rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_atom_selection.py to pdb_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py to mon_lib_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_residue_in_pdb.py to find_residue_in_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cdl_lookup.py to cdl_lookup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py to estimate_bijvoet_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_waters.py to validate_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel.py to fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_model_distances.py to model_model_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/kinemage.py to kinemage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_validation.py to secondary_structure_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cif_as_mtz.py to cif_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chains_as_models.py to chains_as_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py to refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development_fem.py to development_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maximum_entropy_map.py to maximum_entropy_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_view_ad_hoc.py to pdb_view_ad_hoc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fake_f_obs.py to fake_f_obs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_sequence.py to model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_map.py to model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_tls_groups.py to find_tls_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/monomer_library.comp_as_motif.py to monomer_library.comp_as_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/r_factor_statistics.py to r_factor_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compare_ligands.py to compare_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_idealization.py to model_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/partial_omit_map.py to partial_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls.py to tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_model_histogram.py to map_to_model_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/anneal_real_space.py to anneal_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validation_summary.py to validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt_fd.py to afitt_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/angle.py to angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_screen.py to water_screen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/simulate_low_res_data.py to simulate_low_res_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sisa.py to sisa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_analysis.py to tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/strip_model.py to strip_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py to apply_ncs_to_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model.py to f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/refinement.py to refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/plot_weights.py to plot_weights.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm14.py to perm14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm12.py to perm12.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm15.py to perm15.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/analysis.py to analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm10.py to perm10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/decompose.py to decompose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm11.py to perm11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm13.py to perm13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/ladp.py to ladp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/optimise_amplitudes.py to optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/arrays.py to arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_h_to_water.py to tst_add_h_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ringer.py to tst_ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_ccs.py to tst_polder_ccs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py to tst_fmodel_no_cryst1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ncs.py to tst_find_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_mtz2map.py to tst_mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_remediate.py to tst_altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cc_star.py to tst_cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce.py to tst_reduce.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder.py to tst_polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sort_hetatms.py to tst_sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_3.py to tst_polder_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_2.py to tst_fmodel_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rank_scale_map.py to tst_rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_statistics_output.py to tst_statistics_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_sequence.py to tst_model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_angle.py to tst_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_minimize_chain.py to tst_minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_scattering_type_registry.py to tst_scattering_type_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce_timeout.py to tst_reduce_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_fd.py to tst_fmodel_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_special_term_at_end.py to tst_special_term_at_end.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_loop_closure.py to tst_loop_closure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py to tst_tls_optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py to tst_formula_t_S_10_vs_11_2igd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_utils.py to tst_tls_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py to tst_get_t_scheme.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py to tst_u_tls_vs_u_ens_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py to tst_tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py to tst_formula_t_S_10_vs_11_4muy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py to tst_u_tls_vs_u_ens_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py to tst_u_tls_vs_u_ens_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py to tst_tls_refinement_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py to tst_u_tls_vs_u_ens_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py to tst_u_tls_vs_u_ens_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py to tst_tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_map.py to tst_model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py to tst_helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py to tst_isomorphous_difference_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_table_one.py to tst_table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_type_parser.py to tst_map_type_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_1.py to tst_polder_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_2.py to tst_polder_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_dynamics_cli.py to tst_dynamics_cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_domains_from_pae.py to tst_domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_clashes.py to tst_clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_real_space_correlation.py to tst_real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py to tst_regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py to tst_model_tors_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py to tst_model_utils_merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_symmetry.py to tst_model_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py to tst_model_biomt_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py to tst_model_cart_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py to tst_model_dedeuterate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py to tst_model_neutralize_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_2.py to tst_model_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py to tst_model_set_hydrogen_bond_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py to tst_model_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_merge.py to tst_model_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model.py to tst_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_mtrix.py to tst_model_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py to tst_model_get_vdw_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py to tst_model_biomt_mtrix_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ncs.py to tst_model_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py to tst_model_remove_alternative_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py to tst_refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validate_ligands.py to tst_validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_coeffs_simple.py to tst_map_coeffs_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_process_predicted_model.py to tst_process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel.py to tst_fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_prune_model.py to tst_prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_command_line_input.py to tst_command_line_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py to tst_geo_min_restraints_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_alignment.py to tst_alignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ligand_ncs.py to tst_ligand_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_chain_comparison.py to tst_chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_adp_restraints.py to tst_adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_flipping_his.py to tst_flipping_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ss_structure.py to tst_find_ss_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_metal_link_1.py to tst_metal_link_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_multi_residue_class.py to tst_multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py to tst_cis_trans_peptide_link.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sequence_validation.py to tst_sequence_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/make_fake_anomalous_data.py to make_fake_anomalous_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_misc.py to tst_fmodel_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_model_cc.py to tst_map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rigid_bond_test.py to tst_rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ml_estimate.py to tst_ml_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py to tst_apply_cif_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_msa.py to tst_msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py to tst_ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py to tst_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py to tst_minimization_ncs_constraints_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py to tst_ncs_search_flips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py to tst_geometry_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py to tst_minimization_ncs_constraints3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py to tst_ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py to tst_minimization_ncs_constraints2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py to tst_ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_probe.py to tst_probe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fix_rotamer_outliers.py to tst_fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_box.py to tst_polder_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py to tst_add_arrows_on_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_models_to_from_chains.py to tst_models_to_from_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geometry_minimization.py to tst_geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_maps_misc.py to tst_maps_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_pdbtools.py to tst_pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_origin_ids.py to tst_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_schrodinger_interface.py to tst_schrodinger_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_map.py to tst_model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_chain_break.py to tst_altloc_chain_break.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validation_summary.py to tst_validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_anomalous_substructure.py to tst_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py to tst_cif_as_mtz_wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py to tst_psi_phi_extraction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/backbone.py to backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_analyze_model.py to tst_analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/analyze_model.py to analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_backbone.py to tst_backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py to pdb_distances.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:777: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:779: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:816: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1191: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1194: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1499: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1501: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1503: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1505: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1825: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1879: SyntaxWarning: invalid escape sequence '\/' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1988: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1991: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2318: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2324: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2892: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2979: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2981: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py to tst_riding_fd_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py to tst_parameterization_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py to specialised_hydrogen_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/parameterization.py to parameterization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py to tst_riding_fd_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/connectivity.py to connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py to tst_riding_fd_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py to tst_add_hydrogen_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py to tst_riding_fd_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py to tst_parameterization_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/build_hydrogens.py to build_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/riding.py to riding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_0.py to tst_add_hydrogen_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py to tst_parameterization_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py to tst_parameterization_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/validate_H.py to validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py to tst_parameterization_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/find.py to find.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py to tst_riding_fd_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py to tst_parameterization_9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_validate_H.py to tst_validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py to reduce_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py to tst_add_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py to tst_parameterization_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py to tst_add_hydrogen_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_manager.py to tst_riding_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py to tst_parameterization_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py to tst_parameterization_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py to tst_riding_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py to tst_riding_minimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/tst_density_modification.py to tst_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_em_rscc.py to tst_em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rolling.py to em_rolling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_emringer.py to tst_emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rscc.py to em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_scoring.py to em_scoring.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_fit_rotamers.py to tst_fit_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py to tst_anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/refinement_flags.py to refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/weights_params.py to weights_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/adp_refinement.py to adp_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py to tst_select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/print_statistics.py to print_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/targets.py to targets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_refinement_flags.py to tst_refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_real_space_simple.py to tst_real_space_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/energy_monitor.py to energy_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_misc.py to tst_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group_2.py to tst_group_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py to ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py to ensemble_probability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group.py to tst_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/group.py to group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py to tst_rigid_body_groups_from_pdb_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_monitor.py to minimization_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py to flip_peptide_side_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py to tst_individual_sites_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py to tst_fit_residue_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py to tst_fit_residues_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py to tst_aa_residue_axes_and_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py to tst_individual_sites_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/individual_sites.py to individual_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py to tst_fit_residues_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_water.py to fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py to explode_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py to tst_fit_residues_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py to tst_fit_residues_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py to tst_fit_residue_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py to tst_fit_residue_0H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_weight.py to tst_weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py to tst_fit_residues_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py to tst_fit_residues_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py to tst_fit_residues_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py to fit_small_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py to tst_fit_residue_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py to tst_individual_sites_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py to tst_fit_residue_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py to tst_fit_residue_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py to tst_fit_residue_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py to tst_fit_residues_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py to tst_fit_residue_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py to tst_fit_residue_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residue.py to fit_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_monitor.py to tst_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py to tst_fit_residue_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py to tst_fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_his.py to fit_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/weight.py to weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_flipbase.py to tst_flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residues.py to fit_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py to anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/orca.py to orca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py to minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py to inspect_tardy_trajectory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/occupancies.py to occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/wx_tardy_pdb.py to wx_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_occupancy_selections.py to tst_occupancy_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/proq2.py to proq2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/resolve_resources.py to resolve_resources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py to tst_reference_coordinate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py to tst_geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py to tst_torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py to tst_reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py to reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py to torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py to rotamer_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py to tst_reference_model_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/ramachandran.py to ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/orca_manager.py to orca_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/reference.py to reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py to quantum_restraints_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/c_beta.py to c_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py to tst_c_beta_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py to geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qm_manager.py to qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py to tst_reference_coordinate2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/external.py to external.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py to tst_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_manager.py to tst_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/mopac_manager.py to mopac_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qi_utils.py to qi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py to base_qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py to tst_cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/ensemble_cd.py to ensemble_cd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/cartesian_dynamics.py to cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_sa.py to tst_sa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/standard_geometry_cif.py to standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py to tst_rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/rcsb_web_services.py to rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_standard_geometry_cif.py to tst_standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_res.py to cablam_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/parallel_beta.py to parallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/regular_helix_definitions.py to regular_helix_definitions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/how_to.py to how_to.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py to antiparallel_beta_bridge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta.py to antiparallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_math.py to cablam_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_fingerprints.py to cablam_fingerprints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_align.py to cablam_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/waters.py to waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/chain_comparison.py to chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py to kinemage_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py to mean_devs_VAL_THR_ILE_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam_2.py to tst_cablam_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py to tst_do_flips_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py to tst_mp_geo_chiral_volume_cases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py to tst_rama_z_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_undowser.py to tst_undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py to tst_mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py to tst_molprobity_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_model_properties.py to tst_model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py to tst_molprobity_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_waters.py to tst_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py to tst_mp_geo_endtoend.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/run_restraints.py to run_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze.py to tst_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py to tst_clashscore_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py to tst_molprobity_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py to tst_cbetadev_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_suitename.py to tst_suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py to tst_symmetry_SS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py to tst_find_region_max_value.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rotalyze.py to tst_rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_omegalyze.py to tst_omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py to tst_molprobity_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore.py to tst_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo.py to tst_mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py to tst_keep_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py to tst_ramalyze2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py to tst_molprobity_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py to tst_molprobity_arguments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py to tst_rama_z_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rna_validate.py to tst_rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py to tst_chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py to tst_hydrogen_addition_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev.py to tst_cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comprehensive_residue.py to comprehensive_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ensembles.py to ensembles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py to convert_from_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbd_utils.py to cbd_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py to mean_devs_PRO_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/convert_lists.py to convert_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py to mean_devs_others_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/model_properties.py to model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/datasets.py to datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/fav_lists.py to fav_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py to find_ss_from_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py to regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py to tst_insertion_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/proteins.py to proteins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/nucleic_acids.py to nucleic_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py to secondary_structure_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_segid.py to tst_segid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_1.py to tst_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_3.py to tst_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_2.py to tst_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py to tst_ss_id_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_io.py to tst_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_masks.py to mod_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_ga.py to mod_ga.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_mtz.py to mod_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_optimize.py to mod_optimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/max_like_non_uniform.py to max_like_non_uniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/maxlik.py to maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_maxlik.py to tst_maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_max_lik.py to tst_max_lik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_massage_data.py to tst_massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/rip_scale.py to rip_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_scaling.py to relative_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py to tst_xtriage_twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sir_scale.py to sir_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_plots.py to outlier_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py to tst_plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py to tst_bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/make_param.py to make_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absences.py to absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_rejection.py to outlier_rejection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absence_likelihood.py to absence_likelihood.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_scaling.py to tst_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_sigmaa.py to tst_sigmaa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py to massage_twin_detwin_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py to tst_mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_absences.py to tst_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_wilson.py to relative_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pre_scale.py to pre_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/siras_scale.py to siras_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sad_scale.py to sad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/bayesian_estimator.py to bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/random_omit.py to random_omit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twin_analyses.py to twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_outlier.py to tst_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/thorough_outlier_test.py to thorough_outlier_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/basic_analyses.py to basic_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absolute_scaling.py to absolute_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage.py to tst_xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py to ta_alpha_beta_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sigmaa_estimation.py to sigmaa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twmad_scale.py to twmad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pair_analyses.py to pair_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/data_statistics.py to data_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/mean_f_rms_f.py to mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fa_estimation.py to fa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_geometries.py to tst_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_symmetry_axis.py to tst_symmetry_axis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/dump_sites.py to dump_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/tst_classifier.py to tst_classifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca.py to tst_pick_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/identify.py to identify.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_mg.py to tst_pick_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_parameters.py to tst_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/build.py to build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pickle.py to tst_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_ca.py to tst_validate_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_mg.py to tst_validate_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_approx_zn.py to tst_pick_approx_zn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca_svm.py to tst_pick_ca_svm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/environment.py to environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_k.py to tst_pick_k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/halides.py to halides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_environment.py to tst_environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip_tasks.py to xmanip_tasks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/InteractionGraph.py to InteractionGraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Optimizers.py to Optimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py to tst_mmtbx_reduce_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Movers.py to Movers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/cif_parser.py to cif_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_scaler.py to tst_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py to f_model_all_scales.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py to multi_mask_bulk_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py to kbu_refinery.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py to bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py to tst_flat_nonuniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example2.py to example2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example.py to example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py to tst_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py to tst_bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py to tst_fit_kexpb_to_ktotal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/mosaic.py to mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/scaler.py to scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py to tst_kb_sol_u_star_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py to tst_aniso_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/domains_from_pae.py to domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/altloc.py to altloc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/clash.py to clash.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/asa.py to asa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/sphere_surface_sampling.py to sphere_surface_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/topology.py to topology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/shared_types.py to shared_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/twin_f_model.py to twin_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/probabalistic_detwinning.py to probabalistic_detwinning.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/find_peaks.py to find_peaks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_utils.py to ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/cartesian_restraints.py to cartesian_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_search.py to ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/tncs.py to tncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py to ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs.py to ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_params.py to ncs_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/grid2d.py to grid2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/rotatable_bonds.py to rotatable_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/tst_switch_rotamers.py to tst_switch_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/ntc.py to ntc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/tst_ias.py to tst_ias.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/AtomTypes.py to AtomTypes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py to tst_mmtbx_probe_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py to CompareOriginalAndNewProbeAtomInfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/Helpers.py to Helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py to tst_carbo_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py to hydrogen_restrictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py to tst_protein_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py to tst_geo_reduce_for_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_utils.py to glyco_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/server.py to server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_types.py to cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py to tst_rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_setup.py to linking_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py to glyco_chiral_values.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py to tst_glyco_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_triage.py to tst_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/idealized_aa.py to idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py to tst_neutron_distance.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/bondlength_defaults.py to bondlength_defaults.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_mixins.py to linking_mixins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py to tst_iron_sulfur_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py to tst_correct_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py to tst_superpose_ideal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py to tst_all_cif_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_paral_geo.py to tst_paral_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py to conformation_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py to tst_idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py to tst_metal_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_utils.py to linking_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py to tst_pdb_interpretation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py to tst_pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_chg.py to tst_chg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py to tst_tyr_from_gly_and_bnz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conv_v2_v3.py to conv_v2_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py to correct_hydrogen_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py to tst_rna_dna_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py to rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py to populate_auto_linking_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rotamer_utils.py to rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_linking.py to tst_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py to tst_pdb_interpretation_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_selection.py to tst_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py to tst_glyco_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_triage.py to cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_server.py to tst_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py to tst_pdb_interpretation_ncs_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_types.py to tst_cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py to tst_rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py to tst_deuterium_terminii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_utils.py to ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_ready_set_utils.py to tst_ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/xtal_screens.py to xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/chemistry.py to chemistry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_basics.py to ready_set_basics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/hierarchy_utils.py to hierarchy_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_xtal_screens.py to tst_xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/electrons.py to electrons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/rdkit_utils.py to rdkit_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_masks.py to tst_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_asu_mask.py to tst_asu_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/make_library.py to make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/merge_models.py to merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/minimize_chain.py to minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains_2.py to tst_extend_sidechains_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains.py to tst_extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_make_library.py to tst_make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/custom_gm.py to custom_gm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/ccd.py to ccd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py to berkeley_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/starting_conformations.py to starting_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/lifi.py to lifi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_idealization.py to loop_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/invariant_domain.py to invariant_domain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenamedefs.py to suitenamedefs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninput.py to suiteninput.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/dualparse.py to dualparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suites.py to suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/mainchain.py to mainchain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitealyze.py to suitealyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/diangle.py to diangle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninit.py to suiteninit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/transdent.py to transdent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenout.py to suitenout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/tst_hbond.py to tst_hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/skew_kurt_plot.py to skew_kurt_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/data_filtering.py to data_filtering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/sidechain_angles.py to sidechain_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/nqh.py to nqh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/n_dim_table.py to n_dim_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py to tst_rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py to tst_geostd_vs_sidechain_angles_props.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval.py to ramachandran_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py to ramachandran_eval_deprecated.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/rotamer_eval.py to rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/cspad.py to cspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/xtc.py to xtc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/rayonix.py to rayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py to cspad_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/jungfrau.py to jungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/construct_frame.py to construct_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/energy_scan_notch_finder.py to energy_scan_notch_finder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/time.py to time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/max_like.py to max_like.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/chimerax.py to chimerax.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py to make_install_HKLviewer_ChimeraX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/hklview.py to hklview.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/compare_datasets.py to compare_datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/visualize_r_factors.py to visualize_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/multiplicity_viewer.py to multiplicity_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/model_viewer.py to model_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/qttbx.view_structure.py to qttbx.view_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/jsview_3d.py to jsview_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklviewer_gui.py to hklviewer_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py3.py to webbrowser_messenger_py3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/display2.py to display2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/cmdlineframes.py to cmdlineframes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt.py to qt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/tool.py to tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklview_frame.py to hklview_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt_chromium_check.py to qt_chromium_check.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/default_user_preset_buttons.py to default_user_preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/preset_buttons.py to preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py2.py to webbrowser_messenger_py2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/helpers.py to helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtricorder_runner.py to xtricorder_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtriage_runner.py to xtriage_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/map_viewer.py to map_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/xray_structure_viewer.py to xray_structure_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py to tst_HKLviewerQtGuiBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py to tst_HKLviewerOSbrowserBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_hklinfo.py to tst_hklinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py to tst_HKLviewerQtGuiSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py to tst_HKLviewerOSbrowserSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_websocket.py to tst_websocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tests_HKLviewer.py to tests_HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/frames.py to frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_2d.py to view_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/comparison.py to comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_3d.py to view_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_utils.py to progress_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/simulate.py to simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_support.py to progress_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/split_pickles.py to split_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/isoform.py to isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/simulate_partial_data.py to simulate_partial_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_per_frame_wilson.py to cluster_per_frame_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_42.py to cluster_42.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_intensity_statistics.py to cluster_intensity_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_unit_cell.py to cluster_unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_visualise_orientations.py to cluster_visualise_orientations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/api.py to api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster_groups.py to cluster_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/singleframe.py to singleframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/cspad_cbf_tbx.py to cspad_cbf_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/metrology2phil.py to metrology2phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xtc_process.py to cxi_xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_circular_gain_mask.py to cspad_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence.py to cspad_detector_congruence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mask.py to make_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_process.py to xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/get_next_trial_id.py to get_next_trial_id.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_mpi_submit.py to cxi_mpi_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_unpickler.py to frame_unpickler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/print_pickle.py to print_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/subtract_background.py to subtract_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_bar.py to xpp_progress_bar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_detectors.py to monitor_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py to cxi_stream_to_pickle.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:41: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:42: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:45: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:48: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:51: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence2.py to cspad_detector_congruence2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/upload_mtz.py to upload_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/FEE_average_plot.py to FEE_average_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pbs.py to cxi_pbs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trumpet_plots.py to trumpet_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/overlay_spectra.py to overlay_spectra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/view_pixel_histograms.py to view_pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants_cbf.py to quadrants_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_view.py to cxi_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_calibdir2cbfheader.py to cxi_calibdir2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map_cbf.py to convert_gain_map_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/striping.py to striping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_statistics.py to cspad_detector_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_isoform.py to xpp_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_merge.py to cxi_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_display_metrology.py to cxi_display_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_generate_circular_gain_mask.py to cxi_generate_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_psana.py to cxi_psana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cctbx_integration_pickle_viewer.py to cctbx_integration_pickle_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_dump.py to xtc_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xfel_process.py to xfel_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cspad_pinwheel.py to cxi_cspad_pinwheel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cbfheader2slaccalib.py to cxi_cbfheader2slaccalib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cbf_average.py to cbf_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_optical2cbfheader.py to cxi_optical2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_parameters.py to cxi_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/find_highres_shots.py to find_highres_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/runs_sentinel.py to runs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/mpi_average.py to mpi_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_simulate.py to xpp_simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/h5_average.py to h5_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_extractor.py to frame_extractor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_slaccalib2cbfheader.py to cxi_slaccalib2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/beamcenter.py to beamcenter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jungfrau_metrics.py to jungfrau_metrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_json_to_cbf_def.py to experiment_json_to_cbf_def.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_trials.py to monitor_trials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_detail.py to xpp_progress_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/smooth_spectrum.py to smooth_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_apply_metrology.py to cxi_apply_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/auto_submit.py to auto_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants.py to quadrants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_lsf.py to cxi_lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py to detector_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1124: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1126: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1266: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1267: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1268: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1294: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1295: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1296: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_spots.py to cxi_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_manager.py to experiment_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pickle2cbf.py to cxi_pickle2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_detector_format_versions.py to cxi_detector_format_versions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/stills_merge.py to stills_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_diff.py to cxi_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/plot_to_subpixel.py to plot_to_subpixel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_calibration.py to fee_calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/launch_fxs.py to launch_fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mar_mask.py to make_mar_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_dials_mask.py to make_dials_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/calc_gain_ratio.py to calc_gain_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_index.py to cxi_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pyana.py to cxi_pyana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_shifts.py to cspad_detector_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/list_db_metadata.py to list_db_metadata.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_cbf_metrology.py to cspad_cbf_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map.py to convert_gain_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/or_mask.py to or_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trial_stats.py to trial_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_plotcv.py to cxi_plotcv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jobs_sentinel.py to jobs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py to experiment_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py:203: SyntaxWarning: invalid escape sequence '\D' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/recompute_mosaicity.py to recompute_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_view.py to fee_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/riso.py to riso.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xmerge.py to cxi_xmerge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/filter_experiments_by_rmsd.py to filter_experiments_by_rmsd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark10.py to mark10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark0.py to mark0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/panel_fitting.py to panel_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark3.py to mark3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py to flatfile.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1022: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1024: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1026: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1028: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/quadrant.py to quadrant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark1.py to mark1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/split_detector.py to split_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/mp.py to mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/reflection_length.py to reflection_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_file_matcher.py to dials_file_matcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/cctbx_xfel_installer.py to cctbx_xfel_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_pickle_reader.py to dials_pickle_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/kapton_2019_correction_frame_frame_plugin.py to kapton_2019_correction_frame_frame_plugin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/image_pickle_locator.py to image_pickle_locator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_updated_rs.py to postrefinement_updated_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/test_cluster.py to test_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/Cluster.py to Cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/SingleFrame.py to SingleFrame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/status_plot.py to status_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/trials_plot.py to trials_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/wx_detectors.py to wx_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/completeness_plot.py to completeness_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/strong_zulu.py to strong_zulu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/trumpet_plot.py to trumpet_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/einsle.py to einsle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/average_spots.py to average_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_factory.py to postrefinement_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_hybrid_rs.py to postrefinement_hybrid_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/merging_utils.py to merging_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py to cxi_cc.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py:132: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_powder_arcs.py to display_powder_arcs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_legacy_rs.py to postrefinement_legacy_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/spectra_filter.py to spectra_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_spots.py to display_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_radial_average.py to mod_radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/display_calib.py to display_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_pulnix_dump.py to mod_pulnix_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_info.py to mod_event_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hdf5.py to mod_hdf5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py to mod_spectrum_filter_v2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump_bitmap.py to mod_dump_bitmap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_view.py to mod_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py to mod_onecolor_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_illumination_filter.py to mod_illumination_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hitfind.py to mod_hitfind.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py to mod_filter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:52: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:53: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump.py to mod_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter.py to mod_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_daq_status.py to mod_daq_status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_code.py to mod_event_code.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_faster_histograms.py to xes_faster_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_mar.py to mod_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/hitfinder_tbx.py to hitfinder_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_param.py to mod_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_average.py to mod_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_ledge.py to mod_ledge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/pixel_histograms.py to pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py to mod_spectrum_filter_remote_only.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/cspad_tbx.py to cspad_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/average_tbx.py to average_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_image_dict.py to mod_image_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/parse_calib.py to parse_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/common_mode.py to common_mode.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/rayonix_tbx.py to rayonix_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_xes.py to mod_xes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/integrate_image_api.py to integrate_image_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/data_utils.py to data_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/read_geom.py to read_geom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_cxigeom2nexus.py to agipd_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_from_defs.py to agipd_from_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/write_composite_image.py to write_composite_image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_index.py to mpi_fxs_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/fxs.py to fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_bg.py to mpi_fxs_bg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_mask.py to mpi_fxs_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_launch.py to mpi_fxs_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_calib.py to mpi_fxs_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_c2.py to mpi_fxs_c2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_hit.py to pnccd_hit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_tbx.py to pnccd_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/test_3_gaussian.py to test_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/fit_3_gaussian.py to fit_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_scraper.py to spotfinder_scraper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_init.py to xfel_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_plotter.py to spotfinder_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py to xfel_gui_plotter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:393: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:395: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:397: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/run_stats_plotter.py to run_stats_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_controls.py to xfel_gui_controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_dialogs.py to xfel_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/tooltips.py to tooltips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/timeit.py to timeit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/submission_tracker.py to submission_tracker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/rungroup.py to rungroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/experiment.py to experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/frame_logging.py to frame_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/job.py to job.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dxtbx_db.py to dxtbx_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/stats.py to stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/trial.py to trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/tag.py to tag.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py to merging_log_scraper.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:106: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:189: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/xfel_db.py to xfel_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/task.py to task.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/shifter_templates.py to shifter_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats.py to plot_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud_from_experiments.py to plot_uc_cloud_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_isoform_cloud.py to plot_isoform_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud.py to plot_uc_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_in_gui.py to plot_run_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/xfel_gui_launch.py to xfel_gui_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py to plot_spotfinder_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/print_run_stats.py to print_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_reflection_stats.py to plot_reflection_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/ui_server.py to ui_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_from_experiments.py to plot_run_stats_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/get_hit_timestamps.py to get_hit_timestamps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/phil_patch.py to phil_patch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/jf16m_cxigeom2nexus.py to jf16m_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/sync_jf16m_geometry.py to sync_jf16m_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/mono_treatment.py to mono_treatment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/max_like_pos_neg.py to max_like_pos_neg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/solve_orientation.py to solve_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_process.py to small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/xfel_small_cell_process.py to xfel_small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot_prep.py to cake_plot_prep.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/candidate_cells.py to candidate_cells.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_index.py to small_cell_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/powder_from_spots.py to powder_from_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot.py to cake_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/write_orientation_arrows.py to write_orientation_arrows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/powder_util.py to powder_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/small_cell.py to small_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/graph.py to graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/multiproc_temp_parame_opt.py to multiproc_temp_parame_opt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/parameter_optimizer.py to parameter_optimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/components.py to components.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/jf4m_geom2nexus.py to jf4m_geom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/phil_validation.py to phil_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/general_fcalc.py to general_fcalc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/mpi_integrate.py to mpi_integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/absorption.py to absorption.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/merger.py to merger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/group_reflections.py to group_reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/lunus.py to lunus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/experiment_scaler.py to experiment_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_loader.py to file_loader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_load_calculator.py to file_load_calculator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_lister.py to file_lister.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py to intensity_resolution_statistics_cxi.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py:350: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/unit_cell_statistics.py to unit_cell_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/experiment_resolution_statistics.py to experiment_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/beam_statistics.py to beam_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_histogram.py to intensity_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics.py to intensity_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/load_balancer.py to load_balancer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/integrate.py to integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/reflection_table_utils.py to reflection_table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/resolution_binner.py to resolution_binner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/crystal_model.py to crystal_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/application.py to application.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/worker.py to worker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_helper.py to mpi_helper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_abc.py to reindex_to_abc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/token_passing_left_right.py to token_passing_left_right.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/df_cosym.py to df_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/aux_cosym.py to aux_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/polarization.py to polarization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_cosym.py to reindex_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym_tranch_align.py to cosym_tranch_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/compare_results.py to compare_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_reference.py to reindex_to_reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym.py to cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_sr.py to error_modifier_sr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ha14.py to error_modifier_ha14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ev11.py to error_modifier_ev11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/memory_usage.py to memory_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/data_counter.py to data_counter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/reflection_filter.py to reflection_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/experiment_filter.py to experiment_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/cell_listing.py to cell_listing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs2.py to postrefinement_rs2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs.py to postrefinement_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/predictions_to_edges.py to predictions_to_edges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/error_modeler_base.py to error_modeler_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/reduced_chi_squared.py to reduced_chi_squared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine.py to sdfac_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py to sdfac_propagate_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py to sdfac_refine_levmar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate.py to sdfac_propagate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py to sdfac_refine_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/errors_from_residuals.py to errors_from_residuals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_fs.py to merging_database_fs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_flex.py to merging_database_flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database.py to merging_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_sqlite3.py to merging_database_sqlite3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/psana_cctbx.py to psana_cctbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_dials.py to apache_dials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_bcsb.py to apache_bcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache.py to apache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/adsc_client.py to adsc_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_utils.py to apache_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/bcsb_client_example.py to bcsb_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/multipart_encoder.py to multipart_encoder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_read_file.py to spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/pilatus_client.py to pilatus_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/general_client_example.py to general_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/specific_client_example.py to specific_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_client_push.py to spotfinder_server_client_push.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py to mp_spotfinder_server_is_alive.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/imagefiles.py to imagefiles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/sweep_strength.py to sweep_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/find_active_area.py to find_active_area.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/sphere_formulae.py to sphere_formulae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/close_spots_detail.py to close_spots_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/exception.py to exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/stats_distl.py to stats_distl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_phil.py to cxi_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_run3.py to cxi_run3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/wrappers.py to wrappers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py to method2_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py to ice2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py to ice_nztt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py to spotreporter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/heavy_atoms.py to heavy_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/app.py to app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/segmentedctrl.py to segmentedctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/symmetry_dialog.py to symmetry_dialog.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/inspect_r_free_flags.py to inspect_r_free_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/wxpython.py to wxpython.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_statistics.py to pdb_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py to plot_anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/show_file_info.py to show_file_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py to anomalous_differences_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/loggraph.py to loggraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/listeditor.py to listeditor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/process_control.py to process_control.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/sequence_view.py to sequence_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/blast.py to blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/layout.py to layout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/mtz_dump.py to mtz_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/path_dialogs.py to path_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/windows.py to windows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/metallicbutton.py to metallicbutton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/misc_dialogs.py to misc_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/bitmaps.py to bitmaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/qstat_view.py to qstat_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/misc_ctrls.py to misc_ctrls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/boolctrl.py to boolctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tree.py to tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tribool.py to tribool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strings.py to strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/unit_cell.py to unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strctrl.py to strctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/ints.py to ints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floatctrl.py to floatctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/array_label.py to array_label.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/symop.py to symop.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/numbers.py to numbers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/text_base.py to text_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floats.py to floats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/simple_dialogs.py to simple_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice_multi.py to choice_multi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py to choice.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py:18: SyntaxWarning: invalid escape sequence '\*' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/intctrl.py to intctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/space_group.py to space_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/monitor.py to monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/icons.py to icons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/checklistctrl.py to checklistctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/custom_restraints.py to custom_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/adp_statistics.py to adp_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/wx4_compatibility.py to wx4_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/browser.py to browser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/info_panels.py to info_panels.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:208: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:418: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/anomalous_scattering.py to anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/ensemble_validation.py to ensemble_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon.py to polygon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon_db_viewer.py to polygon_db_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/fit_distribution.py to fit_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py to tst_coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_converter.py to coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py to coordinate_frame_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_partial_derivatives.py to tst_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py to tst_bragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py to tst_utils_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_ewald_sphere.py to tst_ewald_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_predict.py to tst_predict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/controls.py to controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_frame.py to spotfinder_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/drivers.py to drivers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_wrap.py to spotfinder_wrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/processing.py to processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/pixels3d.py to pixels3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration.py to calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/results_base.py to results_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/integration.py to integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/integration_core.py to integration_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/ersatz_misset.py to ersatz_misset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2a.py to uc1_2a.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2.py to uc1_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py to uc1_2_positions_idx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/compare_mosflm_xds.py to compare_mosflm_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions.py to uc1_2_positions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_validate.py to uc1_2_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py to instrument_specifics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py to tst_detector_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/slip_viewer.py to slip_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.explore_completeness.py to simage.explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/viewer.py to viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/example_viewer.py to example_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.solver.py to simage.solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.create.py to simage.create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.wx_display.py to simage.wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_pdf.py to sim_pdf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/tst_xfel1_simple.py to tst_xfel1_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_utils.py to sim_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/uc_frame.py to uc_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/ring_frame.py to ring_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/tile_generation.py to tile_generation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/pyslip.py to pyslip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/score_frame.py to score_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_display.py to slip_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py to slip_viewer_image_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py to example_frame_plugin_hidden.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/phil_preferences.py to phil_preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/preferences.py to preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/scope.py to scope.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/g_gradients.py to g_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py to parameter_reduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/sgtbx_adaptor.py to sgtbx_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/subgroup.py to subgroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/spot_shape.py to spot_shape.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/speckfinder.py to speckfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/stats_index.py to stats_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/pixel_spread.py to pixel_spread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/oscillation_shots.py to oscillation_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/tst_sublattice.py to tst_sublattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_auto_monoscan.py to tst_auto_monoscan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_dataset1.py to tst_dataset1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/do_index.py to do_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_detection.py to outlier_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/nearest_neighbor.py to nearest_neighbor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/test_dps.py to test_dps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/force_cell.py to force_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_procedure.py to outlier_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/slip_helpers.py to slip_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py to dials_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/stills_integration.py to stills_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py to deltapsi_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/simple_integration.py to simple_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/dual_resolution_helpers.py to dual_resolution_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/spot_markup.py to spot_markup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/silicon.py to silicon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/solver.py to solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/explore_completeness.py to explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/integrate_crude.py to integrate_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/create.py to create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_labelit_index.py to run_labelit_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/refine_uc_cr.py to refine_uc_cr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/wx_display.py to wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_spotfinder.py to run_spotfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/tst_iotbx_converter.py to tst_iotbx_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/constrainment.py to constrainment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/zuoreduction.py to zuoreduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/cell_assessment.py to cell_assessment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/lepage.py to lepage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py to tst_resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_mask.py to tst_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_scales_errors.py to refine_scales_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation.py to tst_interpolation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py to tst_atom_radius_as_central_peak_width.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation_2.py to tst_interpolation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/prepare_map_for_docking.py to prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/map_symmetry.py to map_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_ccp.py to tst_ccp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_loft.py to tst_loft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py to tst_get_percentile_cutoffs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/real_space_refinement_simple.py to real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_target_and_gradients.py to tst_target_and_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py to tst_peak_volume_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py to tst_real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_asymmetric_map.py to tst_asymmetric_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mem.py to mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_bcr.py to tst_bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py to tst_map_peak_3d_as_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/box.py to box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/bcr.py to bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_sharpening.py to refine_sharpening.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py to resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_curves.py to tst_atom_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/io_utils.py to io_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/dispatcher.py to dispatcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/replay.py to replay.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/frac_cart.py to frac_cart.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/shelx.py to shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/iotbx_cif_validate.py to iotbx_cif_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_hand.py to change_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/browse_settings.py to browse_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors.py to structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/explore_symmetry.py to explore_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/libtbx_help.py to libtbx_help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py to guide_to_notation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_asu.py to jv_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_index.py to jv_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/web_links.py to web_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jvx.py to jvx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/multiple_cell.py to multiple_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_setting.py to change_setting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/wyckoff.py to wyckoff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors_pdb.py to structure_factors_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/cgi_utils.py to cgi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/coordination_sequences.py to coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/find_best_cell.py to find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py to burzlaff_zimmermann_dewolff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/direct_space_asu.py to direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py to tst_distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/super_cell.py to super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_super_cell.py to tst_super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/close_packing.py to close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observation_types.py to observation_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/target_functors.py to target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py to from_scatterers_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/global_counters.py to global_counters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_fft.py to gradients_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_direct.py to gradients_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py to from_scatterers_direct_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers.py to from_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradient_flags.py to gradient_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_base.py to gradients_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients.py to gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py to from_scatterers_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/r1.py to r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_r1.py to tst_r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py to tst_shelxl_wght_ls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/scatterer.py to scatterer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/tst_observations.py to tst_observations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py to generate_henke_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py to generate_sasaki_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/dmtbx.py to dmtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/van_der_waals_radii.py to van_der_waals_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/icsd_radii.py to icsd_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/e_scattering.py to e_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/neutron.py to neutron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/covalent_radii.py to covalent_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py to read_custom_scattering_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/fp_fdp.py to fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/chemical_elements.py to chemical_elements.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/tiny_pse.py to tiny_pse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/formula.py to formula.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/sasaki.py to sasaki.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/henke.py to henke.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/wavelengths.py to wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_section61_io.py to itvc_section61_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py to create_n_gaussian_raw_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py to itvc_cross_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/hydrogen_plots.py to hydrogen_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/combine_fits.py to combine_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py to format_gaussian_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_approx.py to itvc_approx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_kissel.py to itvc_kissel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/rez_rez_grant.py to rez_rez_grant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_fits.py to kissel_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_io.py to kissel_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/e_scattering_plots.py to e_scattering_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_fits.py to itvc_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/attenuation_coefficient.py to attenuation_coefficient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973.py to gruber_1973.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/krivy_gruber_1976.py to krivy_gruber_1976.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/reduction_base.py to reduction_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973_table_1.py to gruber_1973_table_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_join.py to samosa_join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/precession_view.py to precession_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py to find_reticular_twin_laws.cpython-312.pyc /usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py:37: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/form_factor_query.py to form_factor_query.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_scale.py to samosa_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cctbx_test_nightly.py to cctbx_test_nightly.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/diffuse.py to diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/space_group_info.py to space_group_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/wavelength_units.py to wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/structure_factor_timings.py to structure_factor_timings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/xray_structure.show.py to xray_structure.show.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py to eltbx.show_fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal_orientation.py to crystal_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/math_module.py to math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_weighting_schemes.py to tst_weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_show_cosets.py to tst_show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wilson_plot.py to tst_wilson_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_expand_to_p1.py to tst_expand_to_p1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_krivy_gruber.py to tst_krivy_gruber.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py to tst_maptbx_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_math_module.py to tst_math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py to tst_map_weights_for_symmetry_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_find_best_cell.py to tst_find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py to tst_prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_diffuse.py to tst_diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wavelength_units.py to tst_wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py to tst_geometry_restraints_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_data_manipulation.py to tst_miller_data_manipulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_scaling.py to tst_direct_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py to tst_sgtbx_special_op_simplifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem_2.py to tst_mem_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fast_nv1995.py to tst_fast_nv1995.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py to tst_fourier_transform_real_part_at_x.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pointgroup_tools.py to tst_pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_r_free_utils.py to tst_r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_triplet_generator.py to tst_triplet_generator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_fft_map.py to tst_miller_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_loc_res.py to tst_loc_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py to tst_adp_aniso_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_emma.py to tst_emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sphericity.py to tst_sphericity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_denominators.py to tst_sgtbx_denominators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_web_change_basis.py to tst_web_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py to tst_sgtbx_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py to tst_itvb_2001_table_a1427_hall_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization.py to tst_xray_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_create_models_or_maps.py to tst_create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints.py to tst_geometry_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py to tst_reciprocal_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_lookup_utils.py to tst_miller_lookup_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization_failure.py to tst_xray_minimization_failure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_pickling.py to tst_grm_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_mask.py to tst_maptbx_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem.py to tst_mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_fast_gradients.py to tst_xray_fast_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py to tst_sgtbx_tidy_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_is_periodic.py to tst_map_is_periodic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_harker.py to tst_sgtbx_harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py to tst_sgtbx_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_twin_target.py to tst_twin_target.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py to tst_sf_low_res_accuracy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_f_model.py to tst_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grouped_data.py to tst_grouped_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_modifications.py to tst_grm_modifications.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_coordination_sequences.py to tst_coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_2.py to tst_geometry_restraints_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray.py to tst_xray.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_derivatives.py to tst_xray_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_refine_xray_curvs.py to tst_refine_xray_curvs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_change_basis.py to tst_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_french_wilson.py to tst_french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal.py to tst_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pair_asu_table.py to tst_pair_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_box.py to tst_maptbx_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py to tst_adp_constraints_cartesian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx.py to tst_sgtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_space_asu.py to tst_direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_target_functors.py to tst_xray_target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py to tst_fcalc_fft_stability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_statistics_graphs.py to tst_statistics_graphs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py to tst_sgtbx_site_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_close_packing.py to tst_crystal_close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py to tst_miller_merge_equivalents.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints.py to tst_adp_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller.py to tst_miller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py to tst_space_group_type_tidy_cb_op_t.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py to tst_crystal_asu_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py to tst_miller_double_step_filtration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_amplitude_normalisation.py to tst_amplitude_normalisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_statistics.py to tst_miller_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity_allsym.py to tst_connectivity_allsym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/quartz_structure.py to quartz_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/reduced_cell_two_folds.py to reduced_cell_two_folds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_puckers.py to random_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_phase_o_phrenia.py to tst_phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_subgroups.py to space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_2.py to structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py to exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py to find_distances_using_cpp_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py to convert_ccp4_symop_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/neutron_structure_factors.py to neutron_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py to tst_structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/steve_collins.py to steve_collins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py to g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/view_fft_map.py to view_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_transform.py to miller_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/hirshfeld_test.py to hirshfeld_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py to sites_least_squares_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py to u_star_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py to site_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py to sites_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_space_subgroups.py to tst_space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives.py to structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/location_part.py to location_part.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_table.py to site_symmetry_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/getting_started.py to getting_started.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/maximum_subgroups.py to maximum_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/adp_symmetry_constraints.py to adp_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/map_skewness.py to map_skewness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py to tst_structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_f_calc.py to random_f_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py to trigonal_r_vs_tetragonal_i.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_group_matrices.py to space_group_matrices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/ccp4_map.py to ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_4.py to structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_consistency_checks.py to cr2o3_consistency_checks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/f_model_example.py to f_model_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/analyze_adp.py to analyze_adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/change_hand_p31.py to change_hand_p31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/lebedev_2005_perturbation.py to lebedev_2005_perturbation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_common_sets.py to miller_common_sets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_3.py to structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/sub_group_graph.py to sub_group_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py to list_non_principal_continuous_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py to tst_g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/symops_530.py to symops_530.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py to find_sys_abs_equiv_space_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py to g_exp_i_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py to fft_map_electron_density_around_atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py to tst_structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_utilities.py to data_utilities.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test1.py to test1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/scale.py to scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/join.py to join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py to per_lattice_postrefinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/sigma_correction.py to sigma_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/tst_permutations.py to tst_permutations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py to test_levenberg_sparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/task4.py to task4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_subset.py to data_subset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/show_results.py to show_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_cc_half.py to test_cc_half.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_minimizers.py to unit_cell_minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_refinement.py to unit_cell_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py to le_page_1982_vs_lebedev_2005.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_constraints.py to site_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py to tst_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_primitive_cell.py to cr2o3_primitive_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py to tst_structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/r_free_utils.py to r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_map_to_asu_isym.py to tst_map_to_asu_isym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/reindexing.py to reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_reindexing.py to tst_reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/auto_linking_types.py to auto_linking_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py to tst_process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/base_geometry.py to base_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/lbfgs.py to lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py to tst_proxy_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py to tst_nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py to tst_angle_derivs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py to process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/linking_class.py to linking_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/standard_cif_links.py to standard_cif_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/translation_search.py to translation_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adptbx.py to adptbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/bravais_types.py to bravais_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py to plane_group_reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py to short_cuts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py to facet_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py to cut_plane.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py to generate_cpp_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py to tst_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py to check_redundancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py to reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/harker.py to harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_pg_tools.py to reticular_pg_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/cosets.py to cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sys_abs_equiv.py to sys_abs_equiv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sub_lattice_tools.py to sub_lattice_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_twin_laws.py to reticular_twin_laws.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py to rational_matrices_point_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/show_cosets.py to show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/symbol_confidence.py to symbol_confidence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/plane_groups.py to plane_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/pointgroup_tools.py to pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/literal_description.py to literal_description.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_examples.py to run_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/bfgs.py to bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cif_refine.py to cif_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/eval_iso_vs_refined.py to eval_iso_vs_refined.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/dev.py to dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/pdb_dev.py to pdb_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_dev.py to tst_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_bfgs.py to tst_bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tardy_adaptor.py to tardy_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_refine.py to cod_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/anharmonic.py to anharmonic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/multipolar.py to multipolar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/fmt_utils.py to fmt_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx76.py to run_shelx76.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_hl.py to tst_cns_hl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/space_group_option_parser.py to space_group_option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/structure_factor_utils.py to structure_factor_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/github.py to github.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx.py to run_shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/cns_density_modification.py to cns_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_epsilon.py to tst_cns_epsilon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_settings.py to make_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/random_structure.py to random_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_cns_input.py to make_cns_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/debug_utils.py to debug_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/electron_density_sampling.py to electron_density_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/direct_or_fft.py to direct_or_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/create_models_or_maps.py to create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py to approx_amplitude_vs_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/rotation_parameters.py to rotation_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/dump.py to dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/exercise_compression.py to exercise_compression.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/load.py to load.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/filename.py to filename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/xds.py to xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_header.py to print_header.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/install_format.py to install_format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_mask_info.py to show_mask_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image2pickle.py to image2pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_registry.py to show_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image_average.py to image_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_matching_images.py to print_matching_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/read_sequence.py to read_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/detector_superpose.py to detector_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/debug_memory.py to debug_memory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/saturation.py to saturation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/plot_detector_models.py to plot_detector_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/display_parallax_correction.py to display_parallax_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/overload.py to overload.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_matching_formats.py to show_matching_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/depends_on.py to depends_on.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/rotate_and_average.py to rotate_and_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/flumpy.py to flumpy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/beam.py to beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/profile.py to profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers_types.py to detector_helpers_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers.py to detector_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan_helpers.py to scan_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/goniometer.py to goniometer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/crystal.py to crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan.py to scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/experiment_list.py to experiment_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniADSCHF4M.py to FormatCBFMiniADSCHF4M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXIS.py to FormatRAXIS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexus.py to FormatNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPetraP14.py to FormatCBFMiniEigerPetraP14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSER.py to FormatSER.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVJHSim.py to FormatSMVJHSim.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaRayonix.py to FormatHDF5SaclaRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuPilatus.py to FormatSMVRigakuPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py to FormatNXmxEigerFilewriterESRFID232.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFBruker.py to FormatTIFFBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatStill.py to FormatStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFull.py to FormatCBFFull.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLSI19_2.py to FormatNXmxDLSI19_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnNoTS.py to FormatSMVRigakuSaturnNoTS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYmultitile.py to FormatPYmultitile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCDBG.py to FormatSMVADSCDBG.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTileHierarchy.py to FormatCBFMultiTileHierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py to FormatCBFMiniEigerMaxIVBio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixSPring8.py to FormatTIFFRayonixSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI41.py to TemplatePYCXI41.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigaku.py to FormatSMVRigaku.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py to FormatSMVRigakuA200SPring8BL26B1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5PAL.py to FormatHDF5PAL.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxED.py to FormatNXmxED.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS12M.py to FormatCBFMiniPilatusDLS12M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCNoDateStamp.py to FormatSMVADSCNoDateStamp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py to FormatSMVHamamatsuSPring8BL32XU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecifiedStill.py to FormatPYunspecifiedStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullByteOffset.py to FormatCBFFullByteOffset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5.py to FormatHDF5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN445.py to FormatSMVADSCSN445.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py to FormatSMVRigakuSaturnSN07400090.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py to FormatCBFMiniEigerDLS16MSN160.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImage.py to FormatMultiImage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/image.py to image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPilatusHelpers.py to FormatPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS.py to FormatNXmxDLS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMV.py to FormatSMV.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI32.py to TemplatePYCXI32.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTile.py to FormatCBFMultiTile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVCMOS1.py to FormatSMVCMOS1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMRC.py to FormatMRC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatus.py to FormatCBFFullPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerFixedChi.py to FormatBrukerFixedChi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py to FormatCBFFullPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatGatanDM4.py to FormatGatanDM4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerChessID7B2.py to FormatCBFMiniEigerChessID7B2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatEDFALS733.py to FormatEDFALS733.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN915.py to FormatSMVADSCSN915.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexus.py to FormatHDF5EigerNearlyNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFHelpers.py to FormatTIFFHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200.py to FormatSMVRigakuA200.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXDS.py to FormatXDS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCmlfsom.py to FormatSMVADSCmlfsom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI71.py to TemplatePYCXI71.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py to FormatCBFMiniPilatusDLS6MSN119.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py to FormatCBFMiniPilatusDESY6MSN115.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py to FormatCBFFullPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixXPP.py to FormatTIFFRayonixXPP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI51.py to TemplatePYCXI51.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN.py to FormatSMVADSCSN.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI31.py to TemplatePYCXI31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py to FormatCBFMiniPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonix.py to FormatTIFFRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py to FormatSMVRigakuSaturnSN11480296.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py to FormatSMVRigakuSaturnSN09040159.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauHack.py to FormatNexusJungfrauHack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCRayonix.py to FormatXTCRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/cbf_writer.py to cbf_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCMultipleDetectors.py to FormatXTCMultipleDetectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py to FormatCBFFullPilatusDLS300KSN104.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py to FormatCBFMiniPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVNOIR.py to FormatSMVNOIR.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py to FormatCBFMiniEigerPhotonFactory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py to FormatCBFMiniPilatusSPring8_6MSN125.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerPhoton.py to FormatBrukerPhoton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI7d.py to TemplatePYCXI7d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py to FormatHDF5EigerNearlyNexusSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixESRF.py to FormatTIFFRayonixESRF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauExt.py to FormatNexusJungfrauExt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCJungfrau.py to FormatXTCJungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISII.py to FormatRAXISII.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImageLazy.py to FormatMultiImageLazy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nxmx_writer.py to nxmx_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN905.py to FormatSMVADSCSN905.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmx.py to FormatNXmx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatROD.py to FormatROD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBruker.py to FormatBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nexus.py to nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN442.py to FormatSMVADSCSN442.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py to FormatCBFMiniPilatusCHESS_6MSN127.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCEpix.py to FormatXTCEpix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16M.py to FormatNXmxDLS16M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Lambda.py to FormatHDF5Lambda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMarIP.py to FormatMarIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTC.py to FormatXTC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py to FormatCBFMiniPilatusDLS6MSN114.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI61.py to TemplatePYCXI61.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSNAPSID19.py to FormatSMVADSCSNAPSID19.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISIVSpring8.py to FormatRAXISIVSpring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPY.py to FormatPY.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCCspad.py to FormatXTCCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Registry.py to Registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEiger.py to FormatCBFMiniEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py to FormatCBFMiniPilatus3APS19ID6MSN132.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Format.py to Format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusXXX.py to FormatCBFMiniPilatusXXX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsu.py to FormatSMVHamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMini.py to FormatCBFMini.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBF.py to FormatCBF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN926.py to FormatSMVADSCSN926.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriter.py to FormatNXmxEigerFilewriter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py to FormatCBFMiniPilatusDLS6MSN114DMM.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFCspad.py to FormatCBFCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusTimepix2M.py to FormatNexusTimepix2M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN920.py to FormatSMVADSCSN920.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuEiger.py to FormatSMVRigakuEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus.py to FormatCBFMiniPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusHelpers.py to FormatCBFMiniPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFF.py to FormatTIFF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVTimePix_SU.py to FormatSMVTimePix_SU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16MI03.py to FormatNXmxDLS16MI03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecified.py to FormatPYunspecified.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturn.py to FormatSMVRigakuSaturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN457.py to FormatSMVADSCSN457.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatDIP2030b.py to FormatDIP2030b.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSC.py to FormatSMVADSC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Sacla.py to FormatHDF5Sacla.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py to FormatCBFMiniPilatusSOLEILPX16MSN106.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaMPCCD.py to FormatHDF5SaclaMPCCD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN928.py to FormatSMVADSCSN928.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache.py to filecache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py to PILATUS_2M_S_N_24_0107_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py to PILATUS_300K_S_N_3_0104_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/SmarGonShadowMask.py to SmarGonShadowMask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/resolution_corners.py to resolution_corners.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/to_xds.py to to_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/datablock.py to datablock.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache_controller.py to filecache_controller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/sequence_filenames.py to sequence_filenames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/std_pair.py to std_pair.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/rational.py to rational.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/tuple.py to tuple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/python.py to python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/gcd.py to gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/divide_by_zero.py to divide_by_zero.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/inexact.py to inexact.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/int_overflow.py to int_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/segmentation_fault.py to segmentation_fault.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py to nested_cpp_loops_with_check_signals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_platform_info.py to show_platform_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/double_overflow.py to double_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/lcm.py to lcm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py to graph_structure_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/utility.py to utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py to min_cut_max_flow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py to minimum_cut_enumerate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/breadth_first_search.py to breadth_first_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/metric.py to metric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py to connected_component_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/maximum_clique.py to maximum_clique.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/clustering_algorithm.py to clustering_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/hybrid_times.py to hybrid_times.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/simple_parser.py to simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py to crystal_symmetry_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/cod_tools.py to cod_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraint_file_merge.py to restraint_file_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pymol.py to pymol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/format.py to format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_unmerged.py to tst_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py to tst_extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py to extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py to crystal_symmetry_from_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_dano.py to tst_dano.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_miller_dict.py to tst_miller_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ranges.py to ranges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.join_fragment_files.py to pdb.join_fragment_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.reflection_reader.py to cns.reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.dump_as_python.py to shelx.dump_as_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_fasta.py to pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.sdb_reader.py to cns.sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/csv_as_mtz.py to csv_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_accumulation.py to r_free_flags_accumulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/get_pubmed_citation.py to get_pubmed_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_miller_arrays.py to cif.as_miller_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/biomt_reconstruction.py to biomt_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/blast_pdb.py to blast_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/patterson_map.py to patterson_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py to r_free_flags_completion_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif_as_pdb.py to cif_as_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.print_sequence.py to pdb.print_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz.dump.py to mtz.dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/sort_atoms.py to sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.insert_scale_records.py to pdb.insert_scale_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_split_models.py to pdb_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py to flip_symmetric_amino_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz_as_cif.py to mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.validate.py to cif.validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dano_as_amplitudes.py to dano_as_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_comparison.py to pdb_labels_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_xray_structure.py to shelx.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.hierarchy.py to pdb.hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py to cns.transfer_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_cif.py to shelx.as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtrix_reconstruction.py to mtrix_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/detector_image_as_png.py to detector_image_as_png.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_systematic_absences.py to show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py to explore_metric_symmetry.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:339: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:341: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_distances.py to show_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_show_connectivity.py to pdb_show_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns_as_mtz.py to cns_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_statistics.py to reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_add_conformations.py to pdb_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/build_phil_cache.py to build_phil_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_as_cns.py to r_free_flags_as_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_xray_structure.py to cif.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py to pdb.superpose_atoms_by_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.box_around_molecule.py to pdb.box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/xplor.map.show_summary.py to xplor.map.show_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dtrek.to_cns.py to dtrek.to_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_diff.py to pdb_labels_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py to pdb.link_as_geometry_restraints_edits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py to pdb.superpose_centers_of_mass.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.as_xray_structure.py to pdb.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cbf_read.py to cbf_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_remediator.py to pdb_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/isomorphous_difference_patterson.py to isomorphous_difference_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/poscar_as_xray_structure.py to poscar_as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/simple_map_coefficients.py to simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.b_factor_stats.py to pdb.b_factor_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_get_citation.py to pdb_get_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/effective_resolution.py to effective_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/export_scalepack_unmerged.py to export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_reader.py to sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/tst_cns.py to tst_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/space_group_symbols.py to space_group_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/pdb_remarks.py to pdb_remarks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_utils.py to crystal_symmetry_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/index_fobs_sigma_reader.py to index_fobs_sigma_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py to crystal_symmetry_from_sdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/reflection_reader.py to reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_writer.py to sdb_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phases.py to phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/tst_strudat.py to tst_strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/strudat.py to strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py to tst_hierarchy_long_resname_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_miller_sort_asu.py to tst_miller_sort_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_generate_n_char_string.py to tst_generate_n_char_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager.py to tst_map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_xray_scale.py to tst_xray_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py to tst_map_model_manager_external_sharpening_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_plots.py to tst_data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py to tst_hierarchy_long_chain_ids_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py to tst_selected_hierarchy_flip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_atom_selections_10k.py to tst_atom_selections_10k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py to tst_hierarchy_long_resname_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager.py to tst_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager_wrapping.py to tst_map_manager_wrapping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_all_chain_ids.py to tst_all_chain_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_box_around_molecule.py to tst_box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_merging_statistics.py to tst_merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_symmetry.py to tst_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_bioinformatics.py to tst_bioinformatics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py to tst_hierarchy_long_resname_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py to tst_hierarchy_forward_compatible_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py to tst_map_model_manager_model_sharpening_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_segids.py to tst_mmcif_segids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_show_systematic_absences.py to tst_show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py to tst_hierarchy_long_resname_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reindex.py to tst_reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_group_rounding.py to tst_group_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_patterson.py to tst_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py to tst_map_model_manager_half_map_sharpening_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_fasta.py to tst_pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_link_records.py to tst_pdb_link_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_models.py to tst_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py to tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_poscar.py to tst_poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_csv_utils.py to tst_csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_4.py to tst_map_model_manager_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py to tst_pdb_cif_inputs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_tools.py to tst_map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py to tst_cif_as_pdb_1atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_extract_xtal_data.py to tst_extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_3.py to tst_map_model_manager_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_manager.py to tst_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py to tst_hierarchy_copy_select.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py to tst_crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_fetch.py to tst_fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_data_cif.py to tst_split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_lattice_symmetry.py to tst_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py to tst_pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mtz_as_cif.py to tst_mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py to tst_hierarchy_pdb_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_cif.py to tst_pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py to tst_mmcif_to_from_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_restraints_merge.py to tst_restraints_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_2.py to tst_map_model_manager_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_utils.py to tst_reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py to tst_hierarchy_occupancies_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_add_conformations.py to tst_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py to tst_map_model_manager_tls_from_map_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py to tst_map_model_manager_call_consistency.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phases.py to tst_phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_file_reader.py to tst_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phil.py to tst_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py to tst_ncs_search_broken_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py to tst_mmcif_biomt_reduction_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_input.py to tst_ncs_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py to tst_mtrix_biomt_cmdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs.py to tst_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py to tst_ncs_search_ligs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py to tst_ncs_reordered_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py to tst_ncs_user_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py to tst_ncs_groups_preprocessing.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py:409: SyntaxWarning: invalid escape sequence '\P' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py to tst_ncs_without_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_multimodel.py to tst_mmcif_multimodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py to tst_export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_id_str.py to tst_hierarchy_id_str.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_parser.py to tst_simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_editor.py to tst_reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_reader.py to tst_reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_wildcard.py to tst_wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_map_coefficients.py to tst_simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_sort_atoms.py to tst_sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cli_parser.py to tst_cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_1.py to tst_cif_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_symmetry_copies.py to pdb_symmetry_copies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_free_flipper.py to mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_to_map_simple.py to pdb_to_map_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/prepare_model_for_rsr.py to prepare_model_for_rsr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/direct_methods_light.py to direct_methods_light.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py to shelx_latt_sym_to_space_group_symbol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py to pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/libtbx_phil_examples.py to libtbx_phil_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_split_chains.py to pdb_split_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py to pdb_tardy_conf_sampling_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/tst_mtz_free_flipper.py to tst_mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py to recalculate_phenix_refine_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_shake.py to pdb_shake.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_convert_free_to_work.py to mtz_convert_free_to_work.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_hierarchy.py to pdb_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/tst_xplormap.py to tst_xplormap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py to crystal_symmetry_from_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/read_pcr.py to read_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/write_pcr.py to write_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/cif_conversions.py to cif_conversions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/reflections.py to reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/import_data_and_flags.py to import_data_and_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/models.py to models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/lexer.py to lexer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/write_ins.py to write_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_writer.py to tst_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tokens.py to tokens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fcf.py to fcf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/parsers.py to parsers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/hklf.py to hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_hklf.py to tst_hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_fvar_encoding.py to tst_fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_lex_parse_build.py to tst_lex_parse_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py to crystal_symmetry_from_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fvar_encoding.py to fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/writer.py to writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_inp.py to xds_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/blank_cbf.py to blank_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_cbf.py to xds_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xparm.py to xparm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/read_ascii.py to read_ascii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/correction.py to correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/spot_xds.py to spot_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/integrate_hkl.py to integrate_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/gain_cbf.py to gain_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/wildcard.py to wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/csv_utils.py to csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/symmetry.py to symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders_depending_on_smtbx.py to builders_depending_on_smtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif_mtz_data_labels.py to cif_mtz_data_labels.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_plots.py to data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_merge.py to tst_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/no_merge_original_index.py to no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py to tst_no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/space_group_dictionary.py to space_group_dictionary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtrix_biomt.py to mtrix_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/logfiles.py to logfiles.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:19: SyntaxWarning: invalid escape sequence '\%' /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:474: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py to dtrek_symmetry_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/reflnlist_reader.py to reflnlist_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py to crystal_symmetry_from_ref.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_manager.py to map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_raxis2.py to test_raxis2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_debug_write.py to tst_debug_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis_nonsquare.py to raxis_nonsquare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/marIP.py to marIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cbf.py to cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/macscience.py to macscience.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/noir.py to noir.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_mar.py to test_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/active_area_filter.py to active_area_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/filters.py to filters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cspad_detector_formats.py to cspad_detector_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/beam_center_convention.py to beam_center_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/hamamatsu.py to hamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/dtrek.py to dtrek.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger.py to eiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/npy.py to npy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_minicbf.py to adsc_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/bruker.py to bruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_detectors.py to tst_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxisbase.py to raxisbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_py_cbf.py to tst_py_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/image_from_http_request.py to image_from_http_request.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_module.py to adsc_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py to tst_cbf_comp_read_meth.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/detectorbase.py to detectorbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/saturn.py to saturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_minicbf.py to pilatus_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc.py to adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_adsc.py to tst_adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/url_support.py to url_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/mar.py to mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger_minicbf.py to eiger_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/camera_convention.py to camera_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/config_detector.py to config_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py to endstation_max_iv_trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation.py to endstation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/spot_xy_convention.py to spot_xy_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_slice.py to pilatus_slice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis.py to raxis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/edf.py to edf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_model_manager.py to map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/poscar.py to poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/extract_xtal_data.py to extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/box_around_molecule.py to box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/real_map.py to real_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/ncs_spec.py to ncs_spec.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/map_coefficients.py to map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/common.py to common.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/restraint.py to restraint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif.py to tst_mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/records.py to records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/experiment_type.py to experiment_type.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rna_dna_detection.py to rna_dna_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_pdb.py to tst_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py to tst_hierarchy_flip_symmetric_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py to tst_hierarchy_atom_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py to tst_atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/remediator.py to remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/tst_remediator.py to tst_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection.py to tst_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_3_interpretation.py to remark_3_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hierarchy.py to hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/nucleic_acid_codes.py to nucleic_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection_string.py to tst_atom_selection_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hybrid_36.py to hybrid_36.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_290_interpretation.py to remark_290_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_aa_names.py to modified_aa_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_rna_dna_names.py to modified_rna_dna_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/aa_utils.py to aa_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py to tst_rna_dna_atom_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py to tst_mmcif_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdbe.py to pdbe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py to pdb_v3_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/amino_acid_codes.py to amino_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/mmcif.py to mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_2_interpretation.py to remark_2_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure_2.py to tst_secondary_structure_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py to tst_read_mtrix_records_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/secondary_structure.py to secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_name_interpretation.py to atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rcsb.py to rcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy.py to tst_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure.py to tst_secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/misc_records_output.py to misc_records_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py to tst_mmcif_hierarchy_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py to crystal_symmetry_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/download.py to download.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py to tst_hierarchy_flip_symmetric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py to tst_extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/cryst1_interpretation.py to cryst1_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py to extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py to utils.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:7: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:45: SyntaxWarning: invalid escape sequence '\/' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/web_service_api.py to web_service_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py to forward_compatible_pdb_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/fetch.py to fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/alignment_as_hsearch.py to alignment_as_hsearch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/local_blast.py to local_blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py to ncbi_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ebi_wu_blast_xml.py to ebi_wu_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/homologues.py to homologues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/xmlbuild.py to xmlbuild.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pdb_info.py to pdb_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_utils.py to reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/fpfm_reader.py to fpfm_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cli_parser.py to cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/benchmark_refinement.py to benchmark_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/masks.py to masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/absolute_structure.py to absolute_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/anom_refine.py to anom_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_anomrefine.py to tst_commandline_anomrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_refine.py to tst_commandline_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/fpfdp.py to fpfdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_occupancies.py to test_occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py to tst_constrained_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_disorder.py to test_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py to tst_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py to tst_reparametrisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_direction.py to test_direction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_same_group.py to test_same_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_rigid.py to test_rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py to hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/site.py to site.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/rigid.py to rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/adp_restraints.py to adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py to origin_fixing_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/least_squares.py to least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/charge_flipping.py to charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py to tst_ab_initio_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py to tst_charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/conftest.py to conftest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/development.py to development.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/log.py to log.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cpp_function_name.py to cpp_function_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_state.py to tst_easy_mp_state.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_math_utils.py to tst_math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_fully_buffered_timeout.py to tst_fully_buffered_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_python_code_parsing.py to tst_python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/forward_compatibility.py to forward_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/dlite.py to dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/sge_utils.py to sge_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/communication.py to communication.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/transfer.py to transfer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/submission.py to submission.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py to polling.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py:282: SyntaxWarning: invalid escape sequence '\?' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/status.py to status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/pbs_utils.py to pbs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py to scheduling_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/generic.py to generic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/lsf.py to lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling.py to scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/looping.py to looping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/remote.py to remote.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/configure.py to configure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_run.py to easy_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/simplexml.py to simplexml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/mpi4py.py to mpi4py.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/find_reference_cycles.py to find_reference_cycles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_multicore.py to tst_easy_mp_multicore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subprocess_with_fixes.py to subprocess_with_fixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/objgraph.py to objgraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_program_template.py to tst_program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/wait_for_file.py to wait_for_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sphinx_build.py to sphinx_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_all_on_path.py to show_all_on_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install.py to install.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/seconds_since_the_epoch.py to seconds_since_the_epoch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_include_paths.py to show_include_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports_crude.py to find_unused_imports_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numeric_version.py to show_numeric_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_reserved_names.py to find_reserved_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_tests_parallel.py to run_tests_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/nequal.py to nequal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/printenv.py to printenv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports.py to find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/git_avoid_merges.py to git_avoid_merges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remote_processing.py to remote_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clean_clutter.py to clean_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_clutter.py to find_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_not_show_diff.py to assert_not_show_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_but_no_repr.py to show_but_no_repr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/analyse_code_comments.py to analyse_code_comments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin.py to assert_stdin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_sys_executable.py to show_python_sys_executable.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_bin_path.py to show_bin_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py to assert_stdin_contains_strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_binary_bundle.py to start_binary_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/add_from_future_import_division.py to add_from_future_import_division.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_tests.py to show_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remove_tree.py to remove_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_dist_paths.py to show_dist_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_commands.py to show_commands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_variable_names.py to show_variable_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_selfx.py to create_selfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_line_count.py to assert_line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_host_and_user.py to show_host_and_user.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/env_run.py to env_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/extract_code_from_txt.py to extract_code_from_txt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_install_script_bat.py to create_install_script_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_full_command_path.py to show_full_command_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_lib_path.py to show_lib_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_files.py to find_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/parallel_simple.py to parallel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_ends_with.py to assert_stdin_ends_with.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/help.py to help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_dist.py to make_dist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/raise_exception_for_testing.py to raise_exception_for_testing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/prime_factors_of.py to prime_factors_of.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_modules.py to list_modules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/check_libcpp.py to check_libcpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_qstat_counts.py to sge_qstat_counts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py to list_source_files_sorted_by_size.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_number_of_processors.py to show_number_of_processors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/epydoc_run.py to epydoc_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_date_and_time.py to show_date_and_time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/any2unix.py to any2unix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_in_repositories.py to find_in_repositories.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/py_compile_all.py to py_compile_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_process.py to start_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_files.py to list_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/ipython_shell_start.py to ipython_shell_start.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numpy_version.py to show_numpy_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_old_style_classes.py to find_old_style_classes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/path_utility.py to path_utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_repository_paths.py to show_repository_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_ext.py to import_all_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/line_count.py to line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_options.py to show_build_options.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_available_slots.py to sge_available_slots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_env.py to show_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_under_build.py to find_under_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/chunk.py to chunk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_path.py to show_build_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bundle_as_exe.py to bundle_as_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_untested.py to find_untested.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/scons.py to scons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_python.py to import_all_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/easy_qsub.py to easy_qsub.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_dependencies.py to show_python_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_pickled_function.py to run_pickled_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_module_dependencies.py to show_module_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_sphinx_html.py to make_sphinx_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_unzipsfx.py to create_unzipsfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_pythonpath.py to show_pythonpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/dtrace.py to dtrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/progress.py to progress.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/containers.py to containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_object_oriented_patterns.py to tst_object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/complex_math.py to complex_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/topological_sort.py to topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/console_utils.py to console_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_utils.py to xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/wingide.py to wingide.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_containers.py to tst_containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subversion.py to subversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/gui_objects.py to gui_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/parser.py to parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_tokenizer.py to tst_tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/interface.py to interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_interface.py to tst_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tokenizer.py to tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/try_hello_world_c.py to try_hello_world_c.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/crossmingw.py to crossmingw.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/table_utils.py to table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_profile.py to easy_profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_thread_utils.py to tst_thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_pickle.py to tst_easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/math_utils.py to math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/runtime_utils.py to runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_version.py to tst_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_binary_search.py to tst_binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileSocket.py to FileSocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileClient.py to FileClient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/StartServer.py to StartServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileServer.py to FileServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/SocketServer.py to SocketServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/rpath.py to rpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_installer.py to create_windows_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py to install_base_packages.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py:840: SyntaxWarning: invalid escape sequence '\$' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/make_bundle.py to make_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/plus_installer.py to plus_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_pkg.py to create_mac_pkg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_distribution.py to install_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/regenerate_module_files.py to regenerate_module_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py to write_gui_dispatcher_include.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/installer_utils.py to installer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/setup_installer.py to setup_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/package_defs.py to package_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py to bootstrap.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:455: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:457: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/callbacks.py to callbacks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_server_example.py to xmlrpc_server_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mp_handler.py to mp_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/stacktrace.py to stacktrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/cluster_handler.py to cluster_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/philgen.py to philgen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mainthread.py to mainthread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/file_queue.py to file_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/thread_handler.py to thread_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/shared_resource.py to shared_resource.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/parallel_for.py to parallel_for.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/job_scheduler.py to job_scheduler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/socket_queue.py to socket_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/process_pool.py to process_pool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_representation.py to tst_representation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/object_oriented_patterns.py to object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pkg_utils.py to pkg_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp.py to tst_easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyframe.py to pyframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clusterTests.py to clusterTests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_dlite.py to tst_dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyplot.py to pyplot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/env_config.py to env_config.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/assert_utils.py to assert_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cli.py to cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/thread_utils.py to thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/str_utils.py to str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/file_clutter.py to file_clutter.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:12: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:14: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:16: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/statistics_info.py to statistics_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/smart_open.py to smart_open.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_find_unused_imports.py to tst_find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_mp.py to easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/code_analysis.py to code_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_pickle.py to easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_topological_sort.py to tst_topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_runtime_sources.py to copy_runtime_sources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_bat.py to install_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_build_libtbx.py to copy_build_libtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_csh.py to install_csh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_all.py to copy_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py to fastentrypoints.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:43: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:92: SyntaxWarning: invalid escape sequence '\.' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_path.py to tst_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/introspection.py to introspection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_xmlrpc_utils.py to tst_xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/load_env.py to load_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_runtime_utils.py to tst_runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/except_Exception.py to except_Exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/xcode_build_phase.py to xcode_build_phase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/timers.py to timers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/metric_prefixes.py to metric_prefixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/start_print_trace.py to start_print_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_str_utils.py to tst_str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/python_string.py to python_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_scheduling.py to tst_scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_citations.py to tst_citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/parallel.py to parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/pytest.py to pytest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/python_code_parsing.py to python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_template.py to program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/binary_search.py to binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/tst_kokkos_lib.py to tst_kokkos_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_exafel_api.py to tst_exafel_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py to tst_gpu_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_shoeboxes.py to tst_shoeboxes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/predictions.py to predictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py to FormatHDF5AttributeGeometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/forward_models.py to forward_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_input.py to nanoBragg_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py to tst_nanoBragg_pilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py to anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_multisource_background.py to tst_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/sim_data.py to sim_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py to tst_nanoBragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py to nanoBragg_beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py to tst_gaussian_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py to tst_nanoBragg_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py to nanoBragg_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py to tst_gaussian_mosaicity2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py to nanoBragg_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py to tst_nanoBragg_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py to tst_nanoBragg_multipanel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py to tst_nanoBragg_cbf_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py to tst_anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py to nanoBragg_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py to tst_gauss_argchk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py to nanoBragg_gui_frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py to nanoBragg_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/attr_list.py to attr_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/stage_two_utils.py to stage_two_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/device.py to device.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/parameter_errors.py to parameter_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/prep_stage2_input.py to prep_stage2_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py to ensemble_refine_launcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py to stage_two_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/base_refiner.py to base_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py to tetragonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py to monoclinic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py to hexagonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py to orthorhombic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/parameters.py to parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/psf.py to psf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_utils.py to hopper_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_io.py to hopper_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py to hopper_ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/intrinsics.py to intrinsics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/fem_include_search_paths.py to fem_include_search_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/show_calls.py to show_calls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py to insert_write_at_start_of_each_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/split.py to split.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/simple_compilation.py to simple_compilation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_read.py to tst_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_equivalence.py to tst_equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/equivalence.py to equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout_compile.py to tst_cout_compile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tokenization.py to tokenization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout.py to tst_cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py to extract_script_from_html_cctbx_doc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_11_script_1.py to tst_11_script_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py to tst_17_script_rfactors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py to tst_10_doc_programming_tips_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py to tst_2_doc_hlo_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py to tst_18_doc_programming_tips_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_1_template.py to tst_1_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py to tst_6_doc_hlo_model_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/exercise.py to exercise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py to tst_19_doc_programming_tips_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py to tst_3_doc_hlo_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py to tst_16_script_lbfgs_with_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py to tst_7_doc_low_flex_advanced.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py to tst_4_doc_hlo_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py to tst_9_doc_maps_boxing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py to tst_13_script_ideal_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py to tst_5_doc_hlo_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py to tst_8_doc_maps_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py to tst_12_script_compare_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py to tst_14_script_lbfgs_no_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_py_from_html.py to tst_py_from_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py to tst_15_doc_models_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py to self_match.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py to sample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/view_fineslices.py to view_fineslices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_path_indexing_ambiguity.py to change_path_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plotstats.py to plotstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/ray_trace.py to ray_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/frame_extractor_by_scan.py to frame_extractor_by_scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_scale.py to mpi_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/viewstats.py to viewstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/comparestats.py to comparestats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/iotacc.py to iotacc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plot_energy_spectrum.py to plot_energy_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_run.py to mpi_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/spot_param_visualizer.py to spot_param_visualizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/r_mtz_mtz.py to r_mtz_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/cluster_isoform.py to cluster_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/explore_twin_operators.py to explore_twin_operators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/compare_solution_pickles.py to compare_solution_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/solve_indexing_ambiguity.py to solve_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/prime_gui.py to prime_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/print_integration_pickle.py to print_integration_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/mod_isoform_cluster.py to mod_isoform_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_leastsqr.py to mod_leastsqr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs_partiality.py to mod_lbfgs_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_perf.py to mod_perf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_plotter.py to mod_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_merge_data.py to mod_merge_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_partiality.py to mod_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_outlier.py to mod_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py to mod_gui_frames.cpython-312.pyc /usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py:750: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_mx.py to mod_mx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_threads.py to mod_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_misc.py to mod_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_dialogs.py to mod_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_run.py to mod_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_pdb.py to mod_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_results.py to mod_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_indexing_ambiguity.py to mod_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_kmeans.py to mod_kmeans.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/cma_es_interface.py to cma_es_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/tst_cma_es.py to tst_cma_es.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/smoothing.py to smoothing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_reductions.py to generate_reductions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py to generate_std_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py to operator_functor_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_apply.py to generate_apply.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py to generate_operator_traits_builtin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py to generate_operator_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_algebras.py to generate_algebras.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/lbfgs_fem.py to lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/shared.py to shared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/robust_statistics.py to robust_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_random_transform.py to tst_random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_utils.py to random_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_robust.py to tst_robust.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/signal_utils.py to signal_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/graph_tools.py to graph_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_graph.py to tst_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_transform.py to random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/dicts.py to dicts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cubicle_neighbors.py to cubicle_neighbors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/tst_iso_surface.py to tst_iso_surface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minimizers.py to minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/immoptibox_ports.py to immoptibox_ports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_array_loops.py to flex_array_loops.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/rigid_body_refinement_core.py to rigid_body_refinement_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_grid.py to flex_grid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/silver.py to silver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py to lbfgs_linear_least_squares_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_recipe.py to lbfgs_recipe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/minimizer_comparisons.py to minimizer_comparisons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/principal_axes_of_inertia.py to principal_axes_of_inertia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py to integrating_a_weighted_sinc_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/chebyshev_lsq_example.py to chebyshev_lsq_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/genetic_algorithm_with_mp.py to genetic_algorithm_with_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/svd.py to svd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/householder.py to householder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/eigensystem.py to eigensystem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py to tst_tardy_tree_find_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tardy_tree.py to tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_rigidity.py to tst_rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/test_cases_tardy_pdb.py to test_cases_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py to rigidity_matrix_symbolic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree.py to tst_tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity.py to rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/curve_fitting.py to curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/periodogram.py to periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/lefebvre.py to lefebvre.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike_mom.py to tst_zernike_mom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/euler_angles.py to euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gumbel.py to gumbel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900.py to fliege_mayer_900.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sphere_sphere_intersection.py to sphere_sphere_intersection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/scale_curves.py to scale_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/farey.py to farey.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/clustering.py to clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/zernike_align_fft.py to zernike_align_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_multivariate_moments.py to tst_multivariate_moments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_peak.py to fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/chebyshev_lsq_fit.py to chebyshev_lsq_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/cubic_spline.py to cubic_spline.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_bessel_zeros.py to tst_bessel_zeros.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/besselk.py to besselk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/so3_lie_algebra.py to so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_so3_lie_algebra.py to tst_so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_240_21.py to des_3_240_21.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/distributions.py to distributions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_undirected_graph.py to tst_undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/undirected_graph.py to undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_quadratic_function.py to fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py to tst_fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gcd.py to tst_gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_clustering.py to tst_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_cubic_equation.py to tst_cubic_equation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_dmatrix.py to tst_dmatrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py to tst_uniform_rotation_matrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_resample.py to tst_resample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian.py to tst_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_exp_functions.py to tst_exp_functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_line_search.py to tst_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_similarity_indices.py to tst_similarity_indices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_angle_derivative.py to tst_angle_derivative.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_r3_rotation.py to tst_r3_rotation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py to tst_minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_bessel.py to tst_bessel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_periodogram.py to tst_periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_g_function.py to tst_g_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_math.py to tst_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_halton.py to tst_halton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py to tst_orthonormal_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_curve_fitting.py to tst_curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py to tst_gaussian_fit_1d_analytical.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_weighted_correlation.py to tst_weighted_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py to tst_error_propagation_matrix_inverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_quadrature.py to tst_quadrature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_euler_angles.py to tst_euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_tetrahedron.py to tst_tetrahedron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_peak.py to tst_fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/spe.py to spe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_400.py to fliege_mayer_400.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_100_13.py to des_3_100_13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py to fliege_mayer_900_ylm.cpython-312.pyc /usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py:1: SyntaxWarning: invalid escape sequence '\i' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/minimum_covering_ellipsoid.py to minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/multiple_superposition.py to multiple_superposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/breakpoint.py to breakpoint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian.py to gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/incremental_SO3_sampling.py to incremental_SO3_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike.py to tst_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_2d_zernike.py to tst_2d_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sieve_of_eratosthenes.py to sieve_of_eratosthenes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py to tst_normal_equations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/test_problems.py to test_problems.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns_solving.py to normal_eqns_solving.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns.py to normal_eqns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/reparams.py to reparams.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/auxiliary.py to auxiliary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/compulsory.py to compulsory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py to realsymmetricpseudoinverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/refinebase.py to refinebase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/bounds.py to bounds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/min_logging.py to min_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/twisted_gaussian.py to twisted_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/minimizer.py to minimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py to tst_lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_curvatures.py to tst_curvatures.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py to tst_func_free_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py to tst_mpi_split_evaluator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/direct_search_simulated_annealing.py to direct_search_simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_map.py to tst_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/vector.py to vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/set.py to set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_set.py to tst_set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_vector.py to tst_vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/r3_utils.py to r3_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/fftpack.py to fftpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/golden_section_search.py to golden_section_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minpack.py to minpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgsb.py to lbfgsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/simplex.py to simplex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/regular_grid_on_unit_sphere.py to regular_grid_on_unit_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/tst_wigner3j.py to tst_wigner3j.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/row_echelon.py to row_echelon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py to wx_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py to tst_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_molecules.py to wx_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_singular.py to tst_singular.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py to free_motion_reference_impl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_utils.py to test_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py to tst_spherical_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py to tst_featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py to tst_free_motion_hard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_simulation.py to test_simulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py to wx_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_molecules.py to tst_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py to tst_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_tardy.py to tst_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/spatial_lib.py to spatial_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/body_lib.py to body_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_basic.py to tst_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/wx_tardy.py to wx_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py to tst_energy_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/make_bundles.py to make_bundles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/single.py to single.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cross_entropy.py to cross_entropy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/differential_evolution.py to differential_evolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating cctbx.egg-info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt writing manifest file 'cctbx.egg-info/SOURCES.txt' reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' Copying cctbx.egg-info to /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx-2023.12.egg-info Skipping SOURCES.txt running install_scripts # install the dxtbx python modules dh_auto_install --sourcedirectory=dxtbx install -m0755 -d /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.12 --dir dxtbx --dest-dir /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp I: pybuild base:311: /usr/bin/python3 setup.py install --root '/<>/debian/tmp' Found 20 dxtbx dispatchers Found 134 Format classes running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/cudatbx/cufft/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/special_functions/tst_spherical_bessel_jn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions copying /<>/.pybuild/cpython3_3.12/build/cudatbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/cudatbx/scattering/tst_direct_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dssp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_attenuation_coefficient_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_xplor_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bpcx_detector_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgsb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_building_loop_closure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_alignment_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_bcr_bcr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cootbx/view_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/hydrogens_button.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/interactive_edit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/validation_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/ligand_checklist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/simple_zoom_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/watch_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/cootbx/xmlrpc_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rotamer_fit_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_r3_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_structure_factors_direct_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_cablam_align_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_imageset_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_wigner_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_asu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_iso_surface_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_xray_observations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/omptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/omptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_bulk_solvent_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_french_wilson_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_cubicle_neighbors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_hough_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_tuple_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_scaling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_xray_scattering_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_math_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_uctbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_icsd_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_fonts_ucs_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_ellipsoids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/quadrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_scene.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/extract_opengl_specs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/glu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/try_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewers_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_defines_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl_managed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_cube.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/fonts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/generate_functions_bpl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst_viewer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_motion_on_tab.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_viewer_leapmotion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/wx_ellipsoids_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/gltbx/gl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx copying /<>/.pybuild/cpython3_3.12/build/iotbx_cif_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_bandpass_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/alignment/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/kick.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/tst_composite_omit_map_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/composite_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/mtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/maps/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/pair_interaction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pair_interaction/tst_05.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hpdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/bond_angle_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/metal_coordination_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/histidines.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/omega_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_base_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/LinkedResidues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/sf4_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_rdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/altloc_weighting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/cdl_svl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mcl_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/check_cdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/rdl_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_hpdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/conformation_dependent_library/testing_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/sample_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/all_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/rotamer_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/idealized_aa_residues/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_polygon_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/polygon/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon copying /<>/.pybuild/cpython3_3.12/build/mmtbx/msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ensemble_ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/map_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/solvent/ordered_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/super.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development.aev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/perigee.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rama_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/distance_difference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_suspicious_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/get_related_ensemble.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_H_cl_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/verify_mon_lib_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_rotarama_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_diff_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/search_pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fetch_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compute_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_static_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ssm_rmsd_for_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rebuild_cablam_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_peaks_holes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/emringer_score.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/show_r_factors_by_shell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/f000.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/reciprocal_space_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fobs_minus_fobs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/models_as_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mon_lib_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_residue_in_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cdl_lookup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/estimate_bijvoet_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validate_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_model_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/kinemage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/secondary_structure_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cif_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/chains_as_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/development_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/maximum_entropy_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_view_ad_hoc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/fake_f_obs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/find_tls_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/monomer_library.comp_as_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/r_factor_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/compare_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/model_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/partial_omit_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/map_to_model_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/anneal_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/water_screen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/simulate_low_res_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/sisa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/strip_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/command_line/apply_ncs_to_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/mmtbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/f_model_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/f_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/den/plot_weights.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm12.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm15.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/decompose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/perm13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/ladp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/tls/optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/grow_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_h_to_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_ccs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_no_cryst1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_mtz2map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_remediate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cc_star.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sort_hetatms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rank_scale_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_statistics_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_scattering_type_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_reduce_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_special_term_at_end.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_loop_closure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_get_t_scheme.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_as_xyz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_refinement_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tls/tst_tls_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_vs_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_isomorphous_difference_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_type_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_dynamics_cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_clashes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_utils_merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_dedeuterate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_mtrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_get_vdw_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_refine_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_coeffs_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_prune_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_command_line_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geo_min_restraints_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_alignment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ligand_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_flipping_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_find_ss_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_metal_link_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_multi_residue_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cis_trans_peptide_link.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_sequence_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/make_fake_anomalous_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fmodel_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_map_model_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_rigid_bond_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_ml_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_apply_cif_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_msa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_search_flips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/ncs/tst_ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_probe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_fix_rotamer_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_polder_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_add_arrows_on_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_models_to_from_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_maps_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_schrodinger_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_model_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_altloc_chain_break.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_validation_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_anomalous_substructure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/regression/tst_psi_phi_extraction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/analyze_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/disorder/tst_backbone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/parameterization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/build_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/riding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/find.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_fd_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_validate_H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/reduce_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_add_hydrogen_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_parameterization_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/hydrogens/tst_riding_minimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/density_modification/tst_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rolling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/tst_emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_rscc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/em_scoring.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ringer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_fit_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/weights_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/adp_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/print_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/select_best_starting_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/targets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_refinement_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_real_space_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/energy_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/geometry_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/flip_peptide_side_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/individual_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/explode_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_rigid_body.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_small_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_individual_sites_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residues_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_residue_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_fit_water.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_his.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/weight.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/tst_flipbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/real_space/fit_residues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/anomalous_scatterer_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/orca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization_ncs_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/inspect_tardy_trajectory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/wx_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/refinement/tst_occupancy_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/mmtbx/proq2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/resolve_resources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/torsion_restraints/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/orca_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_restraints_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/c_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/geo_file_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/external.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_ramachandran.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/tst_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/mopac_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/qi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/base_qm_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry_restraints/afitt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/ensemble_cd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/cartesian_dynamics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/tst_sa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/dynamics/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/rcsb_web_services.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/wwpdb/tst_standard_geometry_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/model/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model copying /<>/.pybuild/cpython3_3.12/build/mmtbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/parallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/regular_helix_definitions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/how_to.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/fingerprints/antiparallel_beta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_fingerprints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/cablam/cablam_training.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/chain_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/kinemage_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/molprobity/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_do_flips_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_waters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/run_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev_02.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_symmetry_SS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_find_region_max_value.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_mp_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_keep_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_ramalyze2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_molprobity_arguments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rama_z_01.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/regression/tst_cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comprehensive_residue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ensembles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/convert_from_text.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ramachandran/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbd_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_PRO_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/convert_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mean_devs_others_phi_psi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/analyze_peptides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/model_properties.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/fav_lists.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/validation/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation copying /<>/.pybuild/cpython3_3.12/build/mmtbx/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/find_ss_from_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/regularize_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_insertion_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/proteins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/nucleic_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/secondary_structure_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst_segid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/build/tst_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/secondary_structure/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_ga.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/sisa/optimize/mod_optimize.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/max_like_non_uniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_maxlik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/max_lik/tst_max_lik.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/matthews.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_massage_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/rip_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage_twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sir_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/make_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/outlier_rejection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absence_likelihood.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_sigmaa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/massage_twin_detwin_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/remove_outliers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/relative_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pre_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/siras_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/bayesian_estimator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/random_omit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twin_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/thorough_outlier_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/basic_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/absolute_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/tst_xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/ta_alpha_beta_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/sigmaa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/twmad_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/pair_analyses.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/data_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/mean_f_rms_f.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/scaling/fa_estimation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_symmetry_axis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/dump_sites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/svm/tst_classifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/identify.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_ca.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_validate_mg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_approx_zn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_ca_svm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_pick_k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/halides.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ions/tst_environment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip_tasks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/atomic_environment_vectors/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/InteractionGraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Optimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/reduce/Movers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/cif_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/chemical_components/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/f_model_all_scales.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/kbu_refinery.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/bulk_solvent/tst_aniso_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/real_space/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space copying /<>/.pybuild/cpython3_3.12/build/mmtbx/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/domains_from_pae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/altloc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/clash.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/asa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/sphere_surface_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/topology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/geometry/shared_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/twin_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/twinning/probabalistic_detwinning.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning copying /<>/.pybuild/cpython3_3.12/build/mmtbx/find_peaks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rsr/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr copying /<>/.pybuild/cpython3_3.12/build/mmtbx/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/kinemage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/cartesian_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/tncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_restraints_group_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ncs_params.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ncs/ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/grid2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/rotatable_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/tst_switch_rotamers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/fab_elbow_angle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/utils/ntc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ias/tst_ias.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/AtomTypes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/tst_mmtbx_probe_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/probe/Helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename_old.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/undowser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/evalurama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rama_z.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/reduce2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/validate_ligands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probe2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/clashscore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ss_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/ntc_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/chiral_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/pdbtools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/polder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/probescore_ligand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/omegalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/hydrogenate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cablam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/quantum_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/cbetadev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/process_predicted_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rna_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/mp_validate_bonds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/prepare_pdb_deposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/barbed_wire_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/rotalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/water_b_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/arginine_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/programs/comparama.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_carbo_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/hydrogen_restrictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_protein_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_setup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/glyco_chiral_values.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_neutron_distance.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/bondlength_defaults.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_mixins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_correct_hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_superpose_ideal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_all_cif_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_paral_geo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conformation_dependent_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_idealized_aa.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_metal_coordination.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/linking_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_chg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/conv_v2_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/correct_hydrogen_geometries.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/pdb_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_linking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_glyco_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/cif_triage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_cif_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_rotamer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/monomer_library/tst_deuterium_terminii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_ready_set_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/chemistry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/ready_set_basics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/hierarchy_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/tst_xtal_screens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/electrons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/ligands/rdkit_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/xmanip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/masks/tst_asu_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/merge_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/minimize_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/cablam_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_extend_sidechains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/tst_make_library.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/custom_gm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/ccd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/berkeley_ramalyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/starting_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_closure/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/lifi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/ligands/tst_00.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands copying /<>/.pybuild/cpython3_3.12/build/mmtbx/building/loop_idealization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building copying /<>/.pybuild/cpython3_3.12/build/mmtbx/invariant_domain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenamedefs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninput.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/dualparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suites.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/mainchain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitealyze.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/diangle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suiteninit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/transdent.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/suitename/suitenout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/tst_hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/skew_kurt_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/data_filtering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/nci/hbond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/sidechain_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/nqh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/graphics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/n_dim_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/ramachandran_eval_deprecated.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/mmtbx/rotamer/rotamer_eval.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/cspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/xtc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/rayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/cspad_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/legacy_metrology/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/detector/jungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector copying /<>/.pybuild/cpython3_3.12/build/serialtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/construct_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/energy_scan_notch_finder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/util/time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/serialtbx/mono_simulation/max_like.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_graph_structure_comparison_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/viewers/chimerax.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers copying /<>/.pybuild/cpython3_3.12/build/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/qttbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_min_cut_max_flow_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_dtrek_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_f_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_wildcard_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_adp_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/omptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_rigid_body_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_minpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reduce_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_maptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_dynamics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_sparse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_cartesian_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/make_install_HKLviewer_ChimeraX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/hklview.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/compare_datasets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/visualize_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/multiplicity_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/model_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/command_line/qttbx.view_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/jsview_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklviewer_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/display2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/cmdlineframes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/tool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/chimeraX_wheel_src/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/hklview_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/qt_chromium_check.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/default_user_preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/preset_buttons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/webbrowser_messenger_py2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtricorder_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklviewer/xtriage_runner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/map_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/qttbx/xray_structure_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_hklinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tst_websocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/regression/tests_HKLviewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/hklview/view_3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/HKLinfo.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/crys3d/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_maximum_clique_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_fftpack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/progress_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/split_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/xpp/isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/simulate_partial_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_per_frame_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_42.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_intensity_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/command_line/cluster_visualise_orientations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/clustering/singleframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/cspad_cbf_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/detector/metrology2phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector copying /<>/.pybuild/cpython3_3.12/build/xfel/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/get_next_trial_id.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_mpi_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_unpickler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/print_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/subtract_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_bar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_stream_to_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_congruence2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/upload_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/FEE_average_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pbs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trumpet_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/overlay_spectra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/view_pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_calibdir2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/striping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_display_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_generate_circular_gain_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_psana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cctbx_integration_pickle_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xtc_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xfel_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cspad_pinwheel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_cbfheader2slaccalib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cbf_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_optical2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/find_highres_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/runs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/mpi_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_simulate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/h5_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/frame_extractor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_slaccalib2cbfheader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/beamcenter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jungfrau_metrics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_json_to_cbf_def.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/monitor_trials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/xpp_progress_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/smooth_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_apply_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/auto_submit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/quadrants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/detector_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pickle2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_detector_format_versions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/stills_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/plot_to_subpixel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/launch_fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_mar_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/make_dials_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/calc_gain_ratio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_pyana.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_detector_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/list_db_metadata.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cspad_cbf_metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/convert_gain_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/or_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/trial_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_plotcv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/jobs_sentinel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/experiment_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/recompute_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/fee_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/riso.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/metrology.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/cxi_xmerge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/command_line/filter_experiments_by_rmsd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark10.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark0.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/panel_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/legacy_scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/flatfile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/quadrant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/metrology/mark1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology copying /<>/.pybuild/cpython3_3.12/build/xfel/util/drift.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/split_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/reflection_length.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/show_spot_separation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_file_matcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/cctbx_xfel_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/weather.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/dials_pickle_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/kapton_2019_correction_frame_frame_plugin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/util/image_pickle_locator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_updated_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/test_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/Cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/SingleFrame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/clustering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/status_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/trials_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/gfx/wx_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/completeness_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/strong_zulu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/trumpet_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/command_line/einsle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/average_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_hybrid_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/merging_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cxi_cc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_powder_arcs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/postrefinement_legacy_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/spectra_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/display_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/display_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_pulnix_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hdf5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump_bitmap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_illumination_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_hitfind.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/histogram_finalise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_daq_status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_event_code.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/xes_faster_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/hitfinder_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_param.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_ledge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/pixel_histograms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/cspad_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/average_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_image_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/parse_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/common_mode.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/rayonix_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/cspad_ana/mod_xes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/integrate_image_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/cxi/data_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/read_geom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/agipd_from_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/euxfel/write_composite_image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/fxs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_bg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_calib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/mpi_fxs_c2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_hit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/pnccd_ana/pnccd_tbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana copying /<>/.pybuild/cpython3_3.12/build/xfel/amo/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/test_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/vonHamos/fit_3_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/spotfinder_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/run_stats_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/xfel_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/tooltips.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/timeit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/components/submission_tracker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/rungroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/frame_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/job.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dxtbx_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/tag.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/merging_log_scraper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/xfel_db.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/task.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/shifter_templates.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/db/cfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_isoform_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_uc_cloud.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/xfel_gui_launch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/print_run_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_reflection_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/ui_server.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/plot_run_stats_from_experiments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/command_line/get_hit_timestamps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui copying /<>/.pybuild/cpython3_3.12/build/xfel/ui/phil_patch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/jf16m_cxigeom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/sync_jf16m_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/swissfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/mono_treatment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/mono_simulation/max_like_pos_neg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/solve_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/xfel_small_cell_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot_prep.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/candidate_cells.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/small_cell_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/powder_from_spots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/command_line/cake_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/write_orientation_arrows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/powder_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/small_cell/small_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/multiproc_temp_parame_opt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/parameter_optimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/graph_proc/components.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/pal/jf4m_geom2nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/phil_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/general_fcalc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/mpi_integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/command_line/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/absorption.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/tables/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/report/graphs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/merger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/merge/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/group_reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/group/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/lunus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/lunus/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/experiment_scaler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/scale/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_loader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_load_calculator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/file_lister.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/input/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/unit_cell_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/experiment_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/beam_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/intensity_resolution_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/statistics/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/phil/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/load_balancer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/balance/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/integrate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/integrate/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/reflection_table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/resolution_binner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/crystal_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/model/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/validation/application.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/output/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/worker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_helper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_abc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/token_passing_left_right.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/df_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/aux_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/polarization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym_tranch_align.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/compare_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/reindex_to_reference.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/cosym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/modify/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_sr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ha14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/error_modifier_ev11.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/errors/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/memory_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/utils/data_counter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/reflection_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/experiment_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/filter/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/cell_listing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/tdata/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/postrefinement_rs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/application/postrefine/factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/predictions_to_edges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/statistics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/error_modeler_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/reduced_chi_squared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_propagate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/error_model/errors_from_residuals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/algorithms/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_fs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/database/merging_database_sqlite3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database copying /<>/.pybuild/cpython3_3.12/build/xfel/merging/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/psana_cctbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/xfel/lcls_api/exercise_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api copying /<>/.pybuild/cpython3_3.12/build/mmtbx_pair_interaction_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_ab_initio_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/annlib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_max_lik_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_multipolar_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_dials.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_bcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/adsc_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/apache_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/bcsb_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/multipart_encoder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/pilatus_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/general_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/specific_client_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/spotfinder_server_client_push.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/servers/mp_spotfinder_server_is_alive.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/imagefiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/diffraction/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/mp_spotfinder_server_read_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/sweep_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/thin_client.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/command_line/find_active_area.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line copying /<>/.pybuild/cpython3_3.12/build/spotfinder/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/sphere_formulae.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/math_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/core_toolbox/close_spots_detail.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/signal_strength.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/stats_distl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/correction_vector_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/xfel/cxi_run3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/image_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/wrappers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/method2_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/ice_nztt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/applications/heuristic_tbx/spotreporter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/spotfinder/dxtbx_toolbox/practical_heuristics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_flumpy.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_dmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/fftw3tbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_den_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_henke_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ncs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/wxtbx/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/heavy_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/segmentedctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/symmetry_dialog.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/xtriage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/inspect_r_free_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/wxpython.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plot_anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/plan_sad_experiment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/show_file_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/anomalous_differences_histogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/command_line/loggraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/wxtbx/listeditor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/process_control.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/sequence_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/reports/pdb_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports copying /<>/.pybuild/cpython3_3.12/build/wxtbx/b_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/layout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/mtz_dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/path_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/windows.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/metallicbutton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/misc_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/bitmaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/qstat_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/misc_ctrls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/boolctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/tribool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/unit_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/strctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/ints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floatctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/array_label.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/symop.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/numbers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/text_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/floats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/simple_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice_multi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/intctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/phil_controls/space_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls copying /<>/.pybuild/cpython3_3.12/build/wxtbx/monitor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/icons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/checklistctrl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/pdb_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/custom_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/adp_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/wx4_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/browser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/info_panels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/anomalous_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/ensemble_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/emringer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/plots/molprobity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/wxtbx/polygon_db_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx copying /<>/.pybuild/cpython3_3.12/build/boost_python_meta_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_python_hybrid_times_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_ramachandran_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/bandpass/simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass copying /<>/.pybuild/cpython3_3.12/build/rstbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/outlier_spots/fit_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/tst_coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/cftbx/coordinate_frame_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_ewald_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/diffraction/tst_predict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/controls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/drivers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/spotfinder_wrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/pixels3d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/indexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/calibration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/dataset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/results_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/integration_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dials_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/ersatz_misset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2a.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions_idx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/compare_mosflm_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_positions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/uc1_2_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/instrument_specifics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/tst_detector_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/bpcx/detector_model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/slip_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/example_viewer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/command_line/simage.wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_pdf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/constants.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/tst_xfel1_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/simulation/sim_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/uc_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/ring_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/tile_generation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/pyslip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/score_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/calibration_frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/slip_viewer_image_factory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/example_frame_plugin_hidden.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/slip_viewer/frame.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer copying /<>/.pybuild/cpython3_3.12/build/rstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/phil_preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/preferences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/phil/scope.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/g_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/constraints/parameter_reduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/sgtbx_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/symmetry/subgroup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/spot_shape.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/speckfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/stats_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/pixel_spread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/new_horizons/oscillation_shots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/tst_sublattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/sublattice_support/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_auto_monoscan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/tst_dataset1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing/do_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/nearest_neighbor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/test_dps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/force_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/lattice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/outlier_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/indexing_api/tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/slip_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/dials_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/stills_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/stills/simple_integration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/dual_resolution_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/apps/spot_markup.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/silicon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors copying /<>/.pybuild/cpython3_3.12/build/rstbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/solver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/explore_completeness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/integrate_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/create.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_labelit_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/refine_uc_cr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/wx_display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/simage/run_spotfinder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/tst_iotbx_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/constrainment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/zuoreduction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/cell_assessment.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/lepage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/rstbx/dps_core/basis_choice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core copying /<>/.pybuild/cpython3_3.12/build/cma_es_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_scales_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_interpolation_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/map_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_ccp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_loft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_get_percentile_cutoffs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_target_and_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_peak_volume_estimate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_real_space_refinement_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_asymmetric_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/bcr/bcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/refine_sharpening.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/resolution_from_map_and_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/maptbx/tst_atom_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/io_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/dispatcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/replay.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/frac_cart.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/iotbx_cif_validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_hand.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/browse_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/explore_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/libtbx_help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/guide_to_notation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jv_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/web_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/asu_gallery/jvx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/multiple_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/change_setting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/wyckoff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/structure_factors_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/web/cgi_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/tst_super_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal/close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observation_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/global_counters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_direct.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradient_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure_factors/from_scatterers_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_r1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/targets/tst_shelxl_wght_ls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/scatterer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/observations/tst_observations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/xray/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_henke_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/cctbx/dmtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/van_der_waals_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/icsd_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/e_scattering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/neutron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/distance_based_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/covalent_radii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/read_custom_scattering_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/chemical_elements.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/tiny_pse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/formula.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/sasaki.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/henke.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/wavelengths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_section61_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_cross_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/hydrogen_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/combine_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/format_gaussian_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_approx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_kissel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/rez_rez_grant.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/kissel_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/e_scattering_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/development/itvc_fits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/xray_scattering/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/eltbx/attenuation_coefficient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/determine_unit_cell/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/krivy_gruber_1976.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/reduction_base.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/uctbx/gruber_1973_table_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/precession_view.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/find_reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/form_factor_query.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/samosa_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/cctbx_test_nightly.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/space_group_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/structure_factor_timings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/xray_structure.show.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/eltbx.show_fp_fdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/auto_sharpen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/command_line/segment_and_split_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx/neutron/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron copying /<>/.pybuild/cpython3_3.12/build/cctbx/crystal_orientation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sampled_model_density.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wilson_plot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_expand_to_p1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_krivy_gruber.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_math_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_find_best_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_prepare_map_for_docking.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_diffuse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_wavelength_units.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_data_manipulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_scaling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fast_nv1995.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_triplet_generator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_loc_res.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_aniso_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sphericity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_denominators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_web_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reciprocal_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_lookup_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_minimization_failure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_mask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_mem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_fast_gradients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_tidy_pickling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_map_is_periodic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_twin_target.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sf_low_res_accuracy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_f_model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grouped_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_grm_modifications.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_coordination_sequences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_geometry_restraints_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_refine_xray_curvs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_pair_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_maptbx_box.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints_cartesian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_direct_space_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_xray_target_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_fcalc_fft_stability.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_statistics_graphs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_sgtbx_site_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_close_packing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_merge_equivalents.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_adp_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_crystal_asu_clusters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_double_step_filtration.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_amplitude_normalisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_miller_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/regression/tst_connectivity_allsym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/quartz_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/reduced_cell_two_folds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_puckers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_distances_using_cpp_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/convert_ccp4_symop_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/neutron_structure_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/steve_collins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/view_fft_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/hirshfeld_test.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/site_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_space_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/location_part.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/getting_started.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/phase_o_phrenia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/maximum_subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/adp_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/map_skewness.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/random_f_calc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/space_group_matrices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_consistency_checks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/f_model_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/analyze_adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/change_hand_p31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/lebedev_2005_perturbation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/miller_common_sets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/structure_factor_derivatives_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/sub_group_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/list_non_principal_continuous_shifts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/all_axes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/symops_530.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/find_sys_abs_equiv_space_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/g_exp_i_partial_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/fft_map_electron_density_around_atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_utilities.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/join.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/sigma_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/tst_permutations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_levenberg_sparse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/task4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/data_subset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/show_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/merging/test_cc_half.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/unit_cell_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/site_symmetry_constraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_exp_i_alpha_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/cr2o3_primitive_cell.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/examples/tst_structure_factor_derivatives.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples copying /<>/.pybuild/cpython3_3.12/build/cctbx/r_free_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/display.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_map_to_asu_isym.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/miller/tst_reindexing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/auto_linking_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_motif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/base_geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_proxy_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/tst_angle_derivs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/nonbonded_overlaps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/process_nonbonded_proxies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/linking_class.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry_restraints/standard_cif_links.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/covariance/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance copying /<>/.pybuild/cpython3_3.12/build/cctbx/translation_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/adptbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/bravais_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/short_cuts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/cut_plane.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/direct_space_asu/reference_table.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/subgroups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/harker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_pg_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sys_abs_equiv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/sub_lattice_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/reticular_twin_laws.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/rational_matrices_point_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/show_cosets.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/symbol_confidence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/plane_groups.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/pointgroup_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/sgtbx/literal_description.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/geometry/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry copying /<>/.pybuild/cpython3_3.12/build/cctbx/run_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/adp_restraints/energies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_select_and_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cif_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/eval_iso_vs_refined.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/pdb_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_dev.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tst_bfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/tardy_adaptor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/omz/cod_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz copying /<>/.pybuild/cpython3_3.12/build/cctbx/anharmonic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/euclidean_model_matching.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/merging/brehm_diederichs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging copying /<>/.pybuild/cpython3_3.12/build/cctbx/multipolar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/fmt_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx76.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_hl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/space_group_option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/structure_factor_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/github.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/run_shelx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/cns_density_modification.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/tst_cns_epsilon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_settings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/random_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/make_cns_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/debug_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/electron_density_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/direct_or_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/create_models_or_maps.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/development/approx_amplitude_vs_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/rotation_parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/macro_mol/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol copying /<>/.pybuild/cpython3_3.12/build/cctbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks copying /<>/.pybuild/cpython3_3.12/build/cctbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_covariance_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/command_line/dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/exercise_compression.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cbflib_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_emma_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_orientation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_asa_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_validation_ramachandran_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lstbx_normal_equations_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_nexus_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simulation_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_rsr_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_gl_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_fonts_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_model_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_mosaic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_vector_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_linalg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx/py.typed -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/load.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/filename.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/serialize/xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/flex_table.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/array_family/ref_pickle_double_buffered.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_header.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/install_format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_mask_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image2pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/image_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/print_matching_images.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/read_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/detector_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/debug_memory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/saturation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/plot_detector_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/radial_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/display_parallax_correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/overload.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/show_matching_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/command_line/depends_on.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/dxtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_image_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/dlsnxs2cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/util/rotate_and_average.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/flumpy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_flumpy.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/imageset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/model_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/parallax_correction.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/multi_axis_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/virtual_panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel_data.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/pixel_to_millimeter.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/panel.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/ray_intersection.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/compare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/spectrum.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/kappa_goniometer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers_types.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/goniometer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/beam.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/experiment_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/parallax_correction.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/detector.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan_helpers.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment_list.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/to_from_dict.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/kappa_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pixel_to_millimeter.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/crystal.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/multi_axis_goniometer.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/panel.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/spectrum.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/experiment.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/model_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/scan.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/pickle_suite.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/model/boost_python/beam.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_imageset_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniADSCHF4M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXIS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPetraP14.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSER.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVJHSim.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFull.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLSI19_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/README.md -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnNoTS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYmultitile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCDBG.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTileHierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI41.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigaku.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5PAL.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxED.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS12M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCNoDateStamp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecifiedStill.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullByteOffset.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN445.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMV.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI32.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMultiTile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVCMOS1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMRC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerFixedChi.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatGatanDM4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerChessID7B2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatEDFALS733.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN915.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuA200.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXDS.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCmlfsom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI71.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixXPP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI51.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI31.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauHack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCRayonix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/cbf_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCMultipleDetectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/image.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVNOIR.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBrukerPhoton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI7d.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFFRayonixESRF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusJungfrauExt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCJungfrau.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISII.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMultiImageLazy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nxmx_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN905.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatROD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatBruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/nexus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN442.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCEpix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Lambda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatMarIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/TemplatePYCXI61.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSNAPSID19.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatRAXISIVSpring8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPY.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatXTCCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Registry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/Format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusXXX.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVHamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMini.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN926.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxEigerFilewriter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFCspad.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNexusTimepix2M.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN920.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuEiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusHelpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatTIFF.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVTimePix_SU.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatNXmxDLS16MI03.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatPYunspecified.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVRigakuSaturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN457.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatDIP2030b.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSC.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5Sacla.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatHDF5SaclaMPCCD.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/FormatSMVADSCSN928.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/nexus_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/image_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/format/boost_python/cbf_read_buffer.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/nexus/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/detectors.lib -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SConscript -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/goniometer_shadow_masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/SmarGonShadowMask.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/masking.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking copying /<>/.pybuild/cpython3_3.12/build/dxtbx/masking/boost_python/ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_format_nexus_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/resolution_corners.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/example/to_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example copying /<>/.pybuild/cpython3_3.12/build/dxtbx/datablock.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_model_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/error.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/CMakeLists.txt -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/filecache_controller.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/sequence_filenames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/dxtbx_masking_ext.pyi -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/ext.cpp -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/flumpy.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/imageset_ext.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.h -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/dxtbx/boost_python/compression.cc -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_clash_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_glu_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_decompose_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_hierarchy_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_masking_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_merging_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_rational_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_neutron_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_fp_fdp_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fast_linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg copying /<>/.pybuild/cpython3_3.12/build/rstbx_symmetry_constraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_statistics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_stl_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_stl_set_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_lbfgs_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_translation_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_reference_coordinate_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_sphere_surface_sampling_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_pdb_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_breadth_first_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/std_pair.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/rational.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/tuple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/boost/python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/divide_by_zero.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/inexact.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/int_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/segmentation_fault.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/show_platform_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/double_overflow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/command_line/lcm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/graph_structure_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/min_cut_max_flow.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/minimum_cut_enumerate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/breadth_first_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/metric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/connected_component_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/maximum_clique.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/graph/clustering_algorithm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/hybrid_times.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_connected_component_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_tls_optimise_amplitudes_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_shelx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_probe_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_chemical_elements_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_ccp4_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_crystal_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/std_pair_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_diffraction_fastbragg_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/builders.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/crystal_symmetry_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/cod_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif/restraint_file_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif copying /<>/.pybuild/cpython3_3.12/build/iotbx/pymol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/format.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/extract_from_symmetry_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/crystal_symmetry_from_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_dano.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtz/tst_miller_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz copying /<>/.pybuild/cpython3_3.12/build/iotbx/ranges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.join_fragment_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.dump_as_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/emma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/csv_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_accumulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/french_wilson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_converter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/get_pubmed_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_miller_arrays.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/biomt_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/blast_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/patterson_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/symmetry_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_completion_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif_as_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.print_sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz.dump.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.insert_scale_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/flip_symmetric_amino_acids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.validate.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dano_as_amplitudes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_comparison.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns.transfer_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/shelx.as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/mtrix_reconstruction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/detector_image_as_png.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/explore_metric_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/show_distances.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_show_connectivity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cns_as_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/build_phil_cache.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/r_free_flags_as_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cif.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_atoms_by_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/xplor.map.show_summary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/dtrek.to_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_labels_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.superpose_centers_of_mass.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/distance_least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/cbf_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/isomorphous_difference_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/poscar_as_xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb.b_factor_stats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/pdb_get_citation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/effective_resolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/command_line/export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/tst_cns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/space_group_symbols.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/pdb_remarks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/index_fobs_sigma_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_sdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/reflection_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/cns/sdb_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns copying /<>/.pybuild/cpython3_3.12/build/iotbx/phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/tst_strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/kriber/strudat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber copying /<>/.pybuild/cpython3_3.12/build/iotbx/table_one.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_miller_sort_asu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_generate_n_char_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_xray_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_selected_hierarchy_flip.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_atom_selections_10k.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_manager_wrapping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_all_chain_ids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_bioinformatics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_segids.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_show_systematic_absences.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_long_resname_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reindex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_group_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_patterson.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_fasta.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_link_records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_4.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_cif_inputs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_as_pdb_1atom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_copy_select.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_crystal_symmetry_from_any.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_lattice_symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mtz_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_pdb_v3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_pdb_as_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_restraints_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_add_conformations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_map_model_manager_call_consistency.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phases.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_search_ligs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_user_selections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/ncs/tst_ncs_without_validation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_mmcif_multimodel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_export_scalepack_unmerged.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_hierarchy_id_str.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_editor.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_simple_map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_sort_atoms.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/regression/tst_cif_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_symmetry_copies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_to_map_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/prepare_model_for_rsr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/direct_methods_light.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdbx_mmcif_tutorial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/libtbx_phil_examples.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_split_chains.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/tst_mtz_free_flipper.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/recalculate_phenix_refine_r_factors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_shake.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/mtz_convert_free_to_work.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/examples/pdb_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/ccp4_map/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/tst_xplormap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/crystal_symmetry_from_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/xplor/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/read_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/fullprof/write_pcr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/cif_conversions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/reflections.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/import_data_and_flags.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/gui_tools/models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/lexer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/write_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tokens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fcf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/parsers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_hklf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/tst_lex_parse_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/crystal_symmetry_from_ins.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/fvar_encoding.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/shelx/writer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/blank_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xds_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/xparm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/read_ascii.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/correction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/spot_xds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/integrate_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/gain_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/xds/geometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds copying /<>/.pybuild/cpython3_3.12/build/iotbx/wildcard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/csv_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/symmetry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/builders_depending_on_smtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/dsn6/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6 copying /<>/.pybuild/cpython3_3.12/build/iotbx/cif_mtz_data_labels.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/tst_no_merge_original_index.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/crystal_symmetry_from_hkl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/merge.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/scalepack/space_group_dictionary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack copying /<>/.pybuild/cpython3_3.12/build/iotbx/mtrix_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/logfiles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/PrettyPrint/tables.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/dtrek_symmetry_dict.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/reflnlist_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/dtrek/crystal_symmetry_from_ref.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek copying /<>/.pybuild/cpython3_3.12/build/iotbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/file_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_raxis2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_debug_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis_nonsquare.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/marIP.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/generic_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/macscience.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/noir.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/test_mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/active_area_filter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/util/filters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/cspad_detector_formats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/beam_center_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/hamamatsu.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/dtrek.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/npy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/bruker.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_detectors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxisbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_py_cbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/image_from_http_request.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc_module.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_cbf_comp_read_meth.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/detectorbase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/saturn.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/tst_adsc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/url_support.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/mar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/eiger_minicbf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/camera_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/config_detector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation_max_iv_trial.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/endstation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/context/spot_xy_convention.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/pilatus_slice.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/raxis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/detectors/edf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors copying /<>/.pybuild/cpython3_3.12/build/iotbx/map_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/poscar.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/extract_xtal_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/ncs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/split_data_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/unique_with_biomt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/programs/box_around_molecule.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs copying /<>/.pybuild/cpython3_3.12/build/iotbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/real_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/sequence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/ncs_spec.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/map_coefficients.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/common.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/miller_array.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/model.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/data_manager/restraint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/records.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/experiment_type.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rna_dna_detection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_atom_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remediation/tst_remediator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_3_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/nucleic_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_atom_selection_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/hybrid_36.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_290_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_aa_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/modified_rna_dna_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/aa_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_rna_dna_atom_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdbe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/pdb_v3_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/amino_acid_codes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/mmcif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/remark_2_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_name_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/rcsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_secondary_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/misc_records_output.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_mmcif_hierarchy_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/crystal_symmetry_from_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/download.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/xray_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/tst_tls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/cryst1_interpretation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/atom_selection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/web_service_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/pdb/fetch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/alignment_as_hsearch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/local_blast.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ncbi_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/ebi_wu_blast_xml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/homologues.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/xmlbuild.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/bioinformatics/pdb_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics copying /<>/.pybuild/cpython3_3.12/build/iotbx/reflection_file_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/merging_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/fpfm_reader.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/solve/crystal_symmetry_from_inp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve copying /<>/.pybuild/cpython3_3.12/build/iotbx/cli_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx copying /<>/.pybuild/cpython3_3.12/build/scitbx_glmtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_indexing_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_asymmetric_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx_array_family_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/copy_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/ccp4io_adaptbx/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx copying /<>/.pybuild/cpython3_3.12/build/mmtbx_hydrogens_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_graphics_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_geometry_restraints_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/smtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/smtbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/benchmark_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/masks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/absolute_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/anom_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/command_line/refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/smtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_anomrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/test_data/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data copying /<>/.pybuild/cpython3_3.12/build/smtbx/regression/tst_commandline_refine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/fpfdp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/occupancy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_occupancies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_disorder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_direction.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_same_group.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/tests/test_rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/geometrical/hydrogens.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/adp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/site.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/constraints/rigid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/weighting_schemes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/adp_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/restraints/origin_fixing_restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints copying /<>/.pybuild/cpython3_3.12/build/smtbx/refinement/least_squares.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement copying /<>/.pybuild/cpython3_3.12/build/smtbx/absolute_structure/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/ab_initio/tests/tst_charge_flipping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests copying /<>/.pybuild/cpython3_3.12/build/smtbx/conftest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/direct/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct copying /<>/.pybuild/cpython3_3.12/build/smtbx/structure_factors/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors copying /<>/.pybuild/cpython3_3.12/build/smtbx/development.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl copying /<>/.pybuild/cpython3_3.12/build/smtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx/masks/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks copying /<>/.pybuild/cpython3_3.12/build/smtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_boost_thread_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_bruker_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_clustering_algorithm_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_primitive_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_anharmonic_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/spotfinder_distltbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_simage_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/libtbx/log.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cpp_function_name.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_state.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_fully_buffered_timeout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/forward_compatibility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/sge_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/communication.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/transfer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/submission.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/polling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/processing/status.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/pbs_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling_helpers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/generic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/lsf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/looping.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/queuing_system_utils/remote.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/configure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/simplexml.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/mpi4py.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/find_reference_cycles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp_multicore.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subprocess_with_fixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/objgraph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/wait_for_file.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sphinx_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_all_on_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/seconds_since_the_epoch.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_include_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports_crude.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numeric_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_reserved_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_tests_parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/nequal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/printenv.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/git_avoid_merges.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remote_processing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clean_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_not_show_diff.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_but_no_repr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/analyse_code_comments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_sys_executable.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_bin_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_contains_strings.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_binary_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/add_from_future_import_division.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/remove_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_dist_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_commands.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_variable_names.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_selfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_host_and_user.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/env_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/extract_code_from_txt.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_environ_usage.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_install_script_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_full_command_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_lib_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/parallel_simple.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/assert_stdin_ends_with.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/help.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_dist.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/raise_exception_for_testing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/prime_factors_of.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_modules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/check_libcpp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_qstat_counts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_source_files_sorted_by_size.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_number_of_processors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/epydoc_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_date_and_time.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/any2unix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_in_repositories.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/py_compile_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/start_process.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/list_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/ipython_shell_start.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_numpy_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_old_style_classes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/path_utility.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_repository_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/line_count.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_options.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/sge_available_slots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_under_build.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/chunk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_build_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bundle_as_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/find_untested.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/scons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/import_all_python.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/easy_qsub.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_python_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/run_pickled_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_module_dependencies.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/make_sphinx_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/create_unzipsfx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/show_pythonpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/dtrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/command_line/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line copying /<>/.pybuild/cpython3_3.12/build/libtbx/path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/progress.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/complex_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/console_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/wingide.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_containers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/subversion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/gui_objects.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tokenizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/phil/tst_experimental.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil copying /<>/.pybuild/cpython3_3.12/build/libtbx/try_hello_world_c.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/crossmingw.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/table_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_profile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/math_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_version.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileSocket.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileClient.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/StartServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/FileServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/server/SocketServer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/rpath.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_exe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_windows_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_app.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_base_packages.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/make_bundle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_conda.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/plus_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_mac_pkg.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/install_distribution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/regenerate_module_files.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/write_gui_dispatcher_include.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/installer_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/setup_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/package_defs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/auto_build/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build copying /<>/.pybuild/cpython3_3.12/build/libtbx/callbacks.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/xmlrpc_server_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mp_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/stacktrace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/cluster_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/philgen.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/mainthread.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/file_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/thread_handler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/shared_resource.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/parallel_for.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/job_scheduler.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/socket_queue.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/scheduling/process_pool.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_representation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/object_oriented_patterns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pkg_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyframe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clusterTests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_dlite.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/pyplot.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/env_config.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/assert_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/cli.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/thread_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/file_clutter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/result.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_utils/statistics_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/smart_open.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_find_unused_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/code_analysis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/easy_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/option_parser.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_topological_sort.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_runtime_sources.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_bat.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_build_libtbx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/install_csh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/copy_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/bundle/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle copying /<>/.pybuild/cpython3_3.12/build/libtbx/fastentrypoints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_path.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/introspection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_xmlrpc_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/load_env.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/clear_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_runtime_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/except_Exception.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/xcode_build_phase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/development/timers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development copying /<>/.pybuild/cpython3_3.12/build/libtbx/metric_prefixes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/start_print_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_str_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/pubmed.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/python_string.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/sphinx/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_scheduling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/tst_citations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/parallel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/test_utils/pytest.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils copying /<>/.pybuild/cpython3_3.12/build/libtbx/python_code_parsing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/program_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/libtbx/binary_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx copying /<>/.pybuild/cpython3_3.12/build/smtbx_refinement_least_squares_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_geometry_shared_types_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_miller_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_wavelengths_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_mtz_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_masks_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cbflib_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_metric_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fable_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_integration_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/iotbx_detectors_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_viewer_utils_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_format_image_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_sasaki_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/kokkos/tst_kokkos_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos copying /<>/.pybuild/cpython3_3.12/build/simtbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_exafel_api.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_gpu_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/gpu/tst_shoeboxes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu copying /<>/.pybuild/cpython3_3.12/build/simtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx copying /<>/.pybuild/cpython3_3.12/build/simtbx/pixel/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/predictions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/FormatHDF5AttributeGeometry.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/modeling/forward_models.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_multisource_background.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/sim_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_beam.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_init.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/tst_gauss_argchk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/nanoBragg/nanoBragg_crystal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/attr_list.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/stage_two_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/device.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/parameter_errors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/prep_stage2_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/ensemble_refine_launcher.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/stage_two_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/base_refiner.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/refiners/parameters.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/phil.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/mpi_logger.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/psf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_io.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/simtbx/diffBragg/hopper_ensemble_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_python_streambuf_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_single_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/fable/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/intrinsics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/fem_include_search_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/show_calls.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/insert_write_at_start_of_each_procedure.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/split.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/command_line/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line copying /<>/.pybuild/cpython3_3.12/build/fable/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/simple_compilation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/equivalence.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout_compile.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tokenization.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/tst_cout.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/fable/read.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_11_script_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_17_script_rfactors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_2_doc_hlo_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_1_template.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/exercise.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_9_doc_maps_boxing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_13_script_ideal_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_8_doc_maps_intro.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_12_script_compare_ss.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_py_from_html.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression copying /<>/.pybuild/cpython3_3.12/build/cctbx_website/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website copying /<>/.pybuild/cpython3_3.12/build/cctbx_adptbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/source_generators/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/self_match.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/annlib_adaptbx/annlib_adaptbx/sample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx copying /<>/.pybuild/cpython3_3.12/build/cctbx_sgtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_symmetry_search_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/view_fineslices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_path_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plotstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/ray_trace.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/change_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/frame_extractor_by_scan.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_scale.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/viewstats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/comparestats.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/iotacc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/plot_energy_spectrum.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/mpi_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/spot_param_visualizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/r_mtz_mtz.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/cluster_isoform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/explore_twin_operators.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/compare_solution_pickles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/solve_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/prime_gui.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/command_line/print_integration_pickle.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/isoform_cluster/mod_isoform_cluster.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_leastsqr.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_util.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_perf.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_plotter.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_merge_data.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_partiality.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_outlier.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_frames.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_mx.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_threads.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_gui_dialogs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_run.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/postrefine.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_input.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/postrefine/mod_results.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_indexing_ambiguity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_kmeans.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/prime/index_ambiguity/mod_lbfgs.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_covalent_radii_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/determine_unit_cell_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_util_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cma_es/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/cma_es_interface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/cma_es/tst_cma_es.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es copying /<>/.pybuild/cpython3_3.12/build/iotbx_dsn6_map_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_eltbx_tiny_pse_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_adaptbx_graph_utility_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/cctbx_array_family_flex_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/boost_optional_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/rstbx_indexing_api_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/mmtbx_secondary_structure_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx/run_tests.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/smoothing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_reductions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_std_imports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/operator_functor_info.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_apply.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_all.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_operator_functors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/array_family/generate_algebras.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/source_generators/flex_fwd_h.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators copying /<>/.pybuild/cpython3_3.12/build/scitbx/stdlib/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/flex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/array_family/shared.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/robust_statistics.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_robust.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/misc.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/signal_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/graph_tools.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/tst_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/random_transform.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/command_line.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/python_utils/dicts.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/restraints.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cubicle_neighbors.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/tst_iso_surface.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/iso_surface/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface copying /<>/.pybuild/cpython3_3.12/build/scitbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/minimizers.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/graphics_utils/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/immoptibox_ports.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_array_loops.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/rigid_body_refinement_core.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/flex_grid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bevington/silver.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_linear_least_squares_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/lbfgs_recipe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/minimizer_comparisons.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/principal_axes_of_inertia.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/integrating_a_weighted_sinc_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/chebyshev_lsq_example.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/examples/bootstrap.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples copying /<>/.pybuild/cpython3_3.12/build/scitbx/sparse/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse copying /<>/.pybuild/cpython3_3.12/build/scitbx/genetic_algorithm_with_mp.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/svd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/householder.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/linalg/eigensystem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree_find_paths.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/test_cases_tardy_pdb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity_matrix_symbolic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/tst_tardy_tree.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/graph/rigidity.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/lefebvre.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike_mom.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gumbel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sphere_sphere_intersection.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/scale_curves.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/farey.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/zernike_align_fft.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_multivariate_moments.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/chebyshev_lsq_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/cubic_spline.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_bessel_zeros.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/besselk.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_so3_lie_algebra.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_240_21.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/distributions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/undirected_graph.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_quadratic_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gcd.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_clustering.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_cubic_equation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_dmatrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_uniform_rotation_matrix.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_resample.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_exp_functions.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_similarity_indices.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_angle_derivative.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_r3_rotation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_superpose.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_bessel.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_periodogram.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_g_function.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_math.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_halton.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_orthonormal_basis.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_curve_fitting.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_weighted_correlation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_quadrature.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_euler_angles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_tetrahedron.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tests/tst_fit_peak.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/spe.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_400.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/des_3_100_13.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/fliege_mayer_900_ylm.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/minimum_covering_ellipsoid.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/multiple_superposition.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/breakpoint.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian_fit.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/incremental_SO3_sampling.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/tst_2d_zernike.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/sieve_of_eratosthenes.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math copying /<>/.pybuild/cpython3_3.12/build/scitbx/math/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/tst_normal_equations.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/tests/test_problems.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns_solving.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lstbx/normal_eqns.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/random/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/reparams.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/auxiliary.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/compulsory.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/realsymmetricpseudoinverse.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/refinebase.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/bounds.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/optional.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/min_logging.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/twisted_gaussian.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/dtmin/minimizer.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_ext.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_lbfgs_fem.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_curvatures.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_func_free_line_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgs/tst_mpi_split_evaluator.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs copying /<>/.pybuild/cpython3_3.12/build/scitbx/glmtbx/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/direct_search_simulated_annealing.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_map.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_set.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/stl/tst_vector.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl copying /<>/.pybuild/cpython3_3.12/build/scitbx/r3_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/fftpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/golden_section_search.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/minpack.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/lbfgsb.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/simplex.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/regular_grid_on_unit_sphere.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/tst_wigner3j.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/wigner/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/matrix/row_echelon.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_singular.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/free_motion_reference_impl.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_spherical_refinement.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion_hard.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/test_simulation.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/wx_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_molecules.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/tst_free_motion.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/proto/utils.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/tst.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/spatial_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/body_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_basic.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/wx_tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tst_energy_plots.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/make_bundles.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/featherstone.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/joint_lib.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/rigid_body/essence/tardy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/suffixtree/single.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree copying /<>/.pybuild/cpython3_3.12/build/scitbx/libtbx_refresh.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/cross_entropy.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/differential_evolution.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx copying /<>/.pybuild/cpython3_3.12/build/scitbx/boost_python/__init__.py -> /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python copying /<>/.pybuild/cpython3_3.12/build/iotbx_scalepack_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/regression_test_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_suffixtree_shared_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/dxtbx_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/gltbx_quadrics_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12/build/scitbx_random_ext.so -> /<>/debian/tmp/usr/lib/python3.12/dist-packages byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/cufft/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/special_functions/tst_spherical_bessel_jn.py to tst_spherical_bessel_jn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cudatbx/scattering/tst_direct_summation.py to tst_direct_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/view_refinement.py to view_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/hydrogens_button.py to hydrogens_button.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/interactive_edit.py to interactive_edit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/validation_lists.py to validation_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/ligand_checklist.py to ligand_checklist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/simple_zoom_list.py to simple_zoom_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/watch_file.py to watch_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cootbx/xmlrpc_server.py to xmlrpc_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/omptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_fonts_ucs_cpp.py to generate_fonts_ucs_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_ellipsoids.py to tst_ellipsoids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/quadrics.py to quadrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_scene.py to wx_scene.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/extract_opengl_specs.py to extract_opengl_specs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/glu.py to glu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer.py to wx_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_example.py to wx_viewer_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/try_imports.py to try_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewers_images.py to wx_viewers_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/images.py to images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_defines_bpl.py to generate_defines_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_fonts.py to tst_fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/viewer_utils.py to viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl_managed.py to gl_managed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_cube.py to wx_cube.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/util.py to util.cpython-312.pyc /usr/lib/python3.12/dist-packages/gltbx/util.py:61: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/fonts.py to fonts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/generate_functions_bpl.py to generate_functions_bpl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst_viewer_utils.py to tst_viewer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_motion_on_tab.py to wx_motion_on_tab.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_viewer_leapmotion.py to wx_viewer_leapmotion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/wx_ellipsoids_test.py to wx_ellipsoids_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/gltbx/gl.py to gl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/clashes.py to clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/alignment/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fem.py to fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py to tst_composite_omit_map_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_correlation.py to tst_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py to tst_map_model_cc_and_vals_per_atom_xtal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map.py to tst_composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/correlation.py to correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/kick.py to kick.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py to tst_composite_omit_map_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/composite_omit_map.py to composite_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/map_model_cc.py to map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/mtriage.py to mtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/maps/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/pair_interaction.py to pair_interaction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_03.py to tst_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_01.py to tst_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_02.py to tst_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_04.py to tst_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pair_interaction/tst_05.py to tst_05.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py to hpdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py to bond_angle_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py to nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega.py to omega.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py to cdl_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py to tst_cis_c_n_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py to metal_coordination_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py to tst_rna_dna_fragments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/histidines.py to histidines.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/omega_database.py to omega_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py to investigate_rotamer_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl.py to mcl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py to multi_base_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py to cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py to tst_mcl_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py to hydrogen_bonding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py to multi_residue_cdl_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py to tst_poly_ca_multi_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py to tst_mcl_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py to tst_pH_mechanism.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py to mcl_sf4_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py to cdl_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py to LinkedResidues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rotamers.py to rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py to sf4_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py to tst_rdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py to tst_cdl_esd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py to tst_multi_residue_rna.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py to altloc_weighting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py to pH_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py to density_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py to cdl_svl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py to tst_omega_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py to tst_cdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py to tst_mcl_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py to check_cdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py to rdl_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py to multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py to tst_cdl_nucleotides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py to tst_hpdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py to tst_mutli_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py to testing_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py to sample_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/all_his.py to all_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py to rotamer_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/idealized_aa_residues/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/output.py to output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_polygon_data.py to tst_polygon_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst_gui.py to tst_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/polygon/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/msa.py to msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py to ensemble_ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/map_to_water.py to map_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/solvent/ordered_solvent.py to ordered_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/super.py to super.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development.aev.py to development.aev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/perigee.py to perigee.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/dynamics.py to dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rama_outliers.py to fix_rama_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ions.py to validate_ions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/distance_difference.py to distance_difference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_suspicious_residues.py to show_suspicious_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/get_related_ensemble.py to get_related_ensemble.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_data.py to model_vs_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_H_cl_app.py to validate_H_cl_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/altloc_remediate.py to altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/verify_mon_lib_data.py to verify_mon_lib_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_structure_factors.py to map_to_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py to rebuild_rotarama_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sort_hetatms.py to sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prune_model.py to prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel_simple.py to fmodel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_diff_map.py to real_space_diff_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/search_pdb_symmetry.py to search_pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_map.py to model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fetch_pdb.py to fetch_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compute_map_coefficients.py to compute_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py to helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_restraints.py to secondary_structure_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fix_rotamer_outliers.py to fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cc_star.py to cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_static_disorder.py to analyze_static_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ssm_rmsd_for_chains.py to ssm_rmsd_for_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rigid_bond_test.py to rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py to rebuild_cablam_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_peaks_holes.py to find_peaks_holes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/emringer_score.py to emringer_score.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maps.py to maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/density_modification.py to density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_comparison.py to map_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py to show_r_factors_by_shell.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py:106: SyntaxWarning: invalid escape sequence '\(' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/f000.py to f000.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ringer.py to ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py to reciprocal_space_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mtz2map.py to mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_box.py to map_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py to fobs_minus_fobs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/models_as_chains.py to models_as_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/massage_data.py to massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rank_scale_map.py to rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_atom_selection.py to pdb_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py to mon_lib_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_residue_in_pdb.py to find_residue_in_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cdl_lookup.py to cdl_lookup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py to estimate_bijvoet_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validate_waters.py to validate_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fmodel.py to fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_model_distances.py to model_model_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/kinemage.py to kinemage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/secondary_structure_validation.py to secondary_structure_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cif_as_mtz.py to cif_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/chains_as_models.py to chains_as_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py to refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/development_fem.py to development_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/maximum_entropy_map.py to maximum_entropy_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_view_ad_hoc.py to pdb_view_ad_hoc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/fake_f_obs.py to fake_f_obs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_vs_sequence.py to model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_map.py to model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/find_tls_groups.py to find_tls_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/monomer_library.comp_as_motif.py to monomer_library.comp_as_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/r_factor_statistics.py to r_factor_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/compare_ligands.py to compare_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/model_idealization.py to model_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/partial_omit_map.py to partial_omit_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls.py to tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/map_to_model_histogram.py to map_to_model_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/anneal_real_space.py to anneal_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/validation_summary.py to validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt_fd.py to afitt_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/angle.py to angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/water_screen.py to water_screen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/simulate_low_res_data.py to simulate_low_res_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/sisa.py to sisa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/tls_analysis.py to tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/strip_model.py to strip_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py to apply_ncs_to_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model.py to f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/f_model_info.py to f_model_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/f_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/refinement.py to refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/den/plot_weights.py to plot_weights.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm14.py to perm14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm12.py to perm12.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm15.py to perm15.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/analysis.py to analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm10.py to perm10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/decompose.py to decompose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tls_as_xyz.py to tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm11.py to perm11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/perm13.py to perm13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/ladp.py to ladp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/tls/optimise_amplitudes.py to optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/arrays.py to arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/grow_density.py to grow_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_h_to_water.py to tst_add_h_to_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ringer.py to tst_ringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_ccs.py to tst_polder_ccs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py to tst_fmodel_no_cryst1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ncs.py to tst_find_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_mtz2map.py to tst_mtz2map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_remediate.py to tst_altloc_remediate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cc_star.py to tst_cc_star.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce.py to tst_reduce.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder.py to tst_polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sort_hetatms.py to tst_sort_hetatms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_3.py to tst_polder_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_2.py to tst_fmodel_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rank_scale_map.py to tst_rank_scale_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_statistics_output.py to tst_statistics_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_sequence.py to tst_model_vs_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_angle.py to tst_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_minimize_chain.py to tst_minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_scattering_type_registry.py to tst_scattering_type_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_reduce_timeout.py to tst_reduce_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_fd.py to tst_fmodel_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_special_term_at_end.py to tst_special_term_at_end.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_loop_closure.py to tst_loop_closure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py to tst_tls_optimise_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py to tst_formula_t_S_10_vs_11_2igd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_utils.py to tst_tls_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py to tst_get_t_scheme.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py to tst_u_tls_vs_u_ens_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py to tst_tls_as_xyz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py to tst_formula_t_S_10_vs_11_4muy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py to tst_u_tls_vs_u_ens_03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py to tst_u_tls_vs_u_ens_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py to tst_tls_refinement_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py to tst_u_tls_vs_u_ens_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py to tst_u_tls_vs_u_ens_04.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py to tst_tls_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_vs_map.py to tst_model_vs_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py to tst_helix_sheet_recs_as_pdb_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py to tst_isomorphous_difference_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_table_one.py to tst_table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_type_parser.py to tst_map_type_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_1.py to tst_polder_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_2.py to tst_polder_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_dynamics_cli.py to tst_dynamics_cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_domains_from_pae.py to tst_domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_clashes.py to tst_clashes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_real_space_correlation.py to tst_real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py to tst_regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py to tst_model_tors_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py to tst_model_utils_merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_symmetry.py to tst_model_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py to tst_model_biomt_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py to tst_model_cart_ref_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py to tst_model_dedeuterate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py to tst_model_neutralize_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_2.py to tst_model_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py to tst_model_set_hydrogen_bond_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py to tst_model_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_merge.py to tst_model_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model.py to tst_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_mtrix.py to tst_model_mtrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py to tst_model_get_vdw_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py to tst_model_biomt_mtrix_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_ncs.py to tst_model_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py to tst_model_remove_alternative_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py to tst_refine_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validate_ligands.py to tst_validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_coeffs_simple.py to tst_map_coeffs_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_process_predicted_model.py to tst_process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel.py to tst_fmodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_prune_model.py to tst_prune_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_command_line_input.py to tst_command_line_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py to tst_geo_min_restraints_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_alignment.py to tst_alignment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ligand_ncs.py to tst_ligand_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_chain_comparison.py to tst_chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_adp_restraints.py to tst_adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_flipping_his.py to tst_flipping_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_find_ss_structure.py to tst_find_ss_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_metal_link_1.py to tst_metal_link_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_multi_residue_class.py to tst_multi_residue_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py to tst_cis_trans_peptide_link.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_sequence_validation.py to tst_sequence_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/make_fake_anomalous_data.py to make_fake_anomalous_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fmodel_misc.py to tst_fmodel_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_map_model_cc.py to tst_map_model_cc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_rigid_bond_test.py to tst_rigid_bond_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_ml_estimate.py to tst_ml_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py to tst_apply_cif_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_msa.py to tst_msa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py to tst_ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py to tst_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py to tst_minimization_ncs_constraints_real_space.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py to tst_ncs_search_flips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py to tst_geometry_minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py to tst_minimization_ncs_constraints3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py to tst_ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py to tst_minimization_ncs_constraints2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py to tst_ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_probe.py to tst_probe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_fix_rotamer_outliers.py to tst_fix_rotamer_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_polder_box.py to tst_polder_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py to tst_add_arrows_on_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_models_to_from_chains.py to tst_models_to_from_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_geometry_minimization.py to tst_geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_maps_misc.py to tst_maps_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_pdbtools.py to tst_pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_origin_ids.py to tst_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_schrodinger_interface.py to tst_schrodinger_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_model_map.py to tst_model_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_altloc_chain_break.py to tst_altloc_chain_break.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_validation_summary.py to tst_validation_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_anomalous_substructure.py to tst_anomalous_substructure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py to tst_cif_as_mtz_wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py to tst_psi_phi_extraction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/backbone.py to backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_analyze_model.py to tst_analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/analyze_model.py to analyze_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/disorder/tst_backbone.py to tst_backbone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py to pdb_distances.cpython-312.pyc /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:777: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:779: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:816: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1191: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1194: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1499: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1501: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1503: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1505: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1823: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1825: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1879: SyntaxWarning: invalid escape sequence '\/' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1988: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:1991: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2318: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2324: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2892: SyntaxWarning: invalid escape sequence '\S' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2979: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/mmtbx/pdb_distances.py:2981: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py to tst_riding_fd_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py to tst_parameterization_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py to specialised_hydrogen_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/parameterization.py to parameterization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py to tst_riding_fd_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/connectivity.py to connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py to tst_riding_fd_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py to tst_add_hydrogen_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py to tst_riding_fd_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py to tst_parameterization_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/build_hydrogens.py to build_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/riding.py to riding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_0.py to tst_add_hydrogen_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py to tst_parameterization_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py to tst_parameterization_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/validate_H.py to validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py to tst_parameterization_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/find.py to find.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py to tst_riding_fd_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py to tst_parameterization_9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_validate_H.py to tst_validate_H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py to reduce_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py to tst_add_hydrogen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py to tst_parameterization_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py to tst_add_hydrogen_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_manager.py to tst_riding_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py to tst_parameterization_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py to tst_parameterization_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py to tst_riding_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py to tst_riding_minimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/density_modification/tst_density_modification.py to tst_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_em_rscc.py to tst_em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rolling.py to em_rolling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/tst_emringer.py to tst_emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_rscc.py to em_rscc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/em_scoring.py to em_scoring.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ringer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_fit_rotamers.py to tst_fit_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py to tst_anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/refinement_flags.py to refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/weights_params.py to weights_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/adp_refinement.py to adp_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py to tst_select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/print_statistics.py to print_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/select_best_starting_model.py to select_best_starting_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/targets.py to targets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_refinement_flags.py to tst_refinement_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_real_space_simple.py to tst_real_space_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/energy_monitor.py to energy_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_misc.py to tst_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group_2.py to tst_group_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py to ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py to ensemble_probability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_group.py to tst_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/group.py to group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/geometry_minimization.py to geometry_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py to tst_rigid_body_groups_from_pdb_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_monitor.py to minimization_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py to flip_peptide_side_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/rigid_body.py to rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py to tst_individual_sites_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/flipbase.py to flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py to tst_fit_residue_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py to tst_fit_residues_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py to tst_aa_residue_axes_and_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py to tst_individual_sites_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/individual_sites.py to individual_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py to tst_fit_residues_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_water.py to fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py to explode_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py to tst_rigid_body.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py to tst_fit_residues_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py to tst_fit_residues_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py to tst_fit_residue_0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py to tst_fit_residue_0H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_weight.py to tst_weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py to tst_fit_residues_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py to tst_fit_residues_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py to tst_fit_residues_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py to fit_small_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py to tst_fit_residue_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py to tst_individual_sites_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py to tst_fit_residue_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py to tst_fit_residue_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py to tst_fit_residue_1H.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py to tst_fit_residues_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py to tst_fit_residue_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py to tst_fit_residue_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residue.py to fit_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_monitor.py to tst_monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py to tst_fit_residue_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py to tst_fit_water.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_his.py to fit_his.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/weight.py to weight.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/tst_flipbase.py to tst_flipbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/real_space/fit_residues.py to fit_residues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py to anomalous_scatterer_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/orca.py to orca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py to minimization_ncs_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py to inspect_tardy_trajectory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/occupancies.py to occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/wx_tardy_pdb.py to wx_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/refinement/tst_occupancy_selections.py to tst_occupancy_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/proq2.py to proq2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/resolve_resources.py to resolve_resources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py to tst_reference_coordinate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py to tst_geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py to tst_torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py to tst_reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py to reference_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py to torsion_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py to rotamer_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py to tst_reference_model_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/ramachandran.py to ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/orca_manager.py to orca_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/reference.py to reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py to quantum_restraints_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/c_beta.py to c_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py to tst_c_beta_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py to geo_file_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qm_manager.py to qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py to tst_reference_coordinate2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/external.py to external.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py to tst_ramachandran.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/tst_manager.py to tst_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/mopac_manager.py to mopac_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/qi_utils.py to qi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py to base_qm_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry_restraints/afitt.py to afitt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py to tst_cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/ensemble_cd.py to ensemble_cd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/cartesian_dynamics.py to cartesian_dynamics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/tst_sa.py to tst_sa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/dynamics/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space_correlation.py to real_space_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/standard_geometry_cif.py to standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py to tst_rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/rcsb_web_services.py to rcsb_web_services.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/wwpdb/tst_standard_geometry_cif.py to tst_standard_geometry_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/model/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_res.py to cablam_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/parallel_beta.py to parallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/regular_helix_definitions.py to regular_helix_definitions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/how_to.py to how_to.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta_bridge.py to antiparallel_beta_bridge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/fingerprints/antiparallel_beta.py to antiparallel_beta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_math.py to cablam_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_fingerprints.py to cablam_fingerprints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_align.py to cablam_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_validate.py to cablam_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/cablam/cablam_training.py to cablam_training.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/waters.py to waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/chain_comparison.py to chain_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/mp_geo.py to mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py to kinemage_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py to mean_devs_VAL_THR_ILE_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam_2.py to tst_cablam_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py to tst_do_flips_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py to tst_mp_geo_chiral_volume_cases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py to tst_rama_z_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_undowser.py to tst_undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py to tst_mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cablam.py to tst_cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py to tst_molprobity_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_model_properties.py to tst_model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py to tst_molprobity_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_waters.py to tst_waters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py to tst_mp_geo_endtoend.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/run_restraints.py to run_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze.py to tst_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py to tst_clashscore_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py to tst_molprobity_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py to tst_cbetadev_02.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_suitename.py to tst_suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_restraints.py to tst_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py to tst_symmetry_SS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py to tst_find_region_max_value.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rotalyze.py to tst_rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_omegalyze.py to tst_omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py to tst_molprobity_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_clashscore.py to tst_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_mp_geo.py to tst_mp_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py to tst_keep_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py to tst_ramalyze2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py to tst_molprobity_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py to tst_molprobity_arguments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py to tst_rama_z_01.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_rna_validate.py to tst_rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py to tst_chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py to tst_hydrogen_addition_clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/regression/tst_cbetadev.py to tst_cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comprehensive_residue.py to comprehensive_residue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ensembles.py to ensembles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py to convert_from_text.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ramachandran/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbd_utils.py to cbd_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py to mean_devs_PRO_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/convert_lists.py to convert_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py to mean_devs_others_phi_psi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/analyze_peptides.py to analyze_peptides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/model_properties.py to model_properties.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/datasets.py to datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/fav_lists.py to fav_lists.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/validation/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py to find_ss_from_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py to regularize_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py to tst_insertion_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/proteins.py to proteins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/nucleic_acids.py to nucleic_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py to secondary_structure_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst_segid.py to tst_segid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_1.py to tst_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_3.py to tst_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_2.py to tst_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py to tst_ss_id_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/build/tst_io.py to tst_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/secondary_structure/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_masks.py to mod_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_ga.py to mod_ga.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_mtz.py to mod_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/sisa/optimize/mod_optimize.py to mod_optimize.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/max_like_non_uniform.py to max_like_non_uniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/maxlik.py to maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_maxlik.py to tst_maxlik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/max_lik/tst_max_lik.py to tst_max_lik.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/matthews.py to matthews.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_massage_data.py to tst_massage_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/rip_scale.py to rip_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_scaling.py to relative_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py to tst_xtriage_twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sir_scale.py to sir_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_plots.py to outlier_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py to tst_plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py to tst_bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/make_param.py to make_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absences.py to absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/outlier_rejection.py to outlier_rejection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absence_likelihood.py to absence_likelihood.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_scaling.py to tst_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_sigmaa.py to tst_sigmaa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py to massage_twin_detwin_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py to tst_mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_absences.py to tst_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/remove_outliers.py to remove_outliers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/relative_wilson.py to relative_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pre_scale.py to pre_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fest.py to fest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/siras_scale.py to siras_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sad_scale.py to sad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/bayesian_estimator.py to bayesian_estimator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/random_omit.py to random_omit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twin_analyses.py to twin_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_outlier.py to tst_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/thorough_outlier_test.py to thorough_outlier_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/basic_analyses.py to basic_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/absolute_scaling.py to absolute_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/tst_xtriage.py to tst_xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py to ta_alpha_beta_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/sigmaa_estimation.py to sigmaa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/twmad_scale.py to twmad_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/pair_analyses.py to pair_analyses.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/data_statistics.py to data_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/mean_f_rms_f.py to mean_f_rms_f.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/scaling/fa_estimation.py to fa_estimation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_geometries.py to tst_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_symmetry_axis.py to tst_symmetry_axis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/dump_sites.py to dump_sites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/svm/tst_classifier.py to tst_classifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca.py to tst_pick_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/identify.py to identify.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_mg.py to tst_pick_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_parameters.py to tst_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/build.py to build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pickle.py to tst_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_ca.py to tst_validate_ca.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_validate_mg.py to tst_validate_mg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_approx_zn.py to tst_pick_approx_zn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_ca_svm.py to tst_pick_ca_svm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/environment.py to environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_pick_k.py to tst_pick_k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/halides.py to halides.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ions/tst_environment.py to tst_environment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip_tasks.py to xmanip_tasks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/atomic_environment_vectors/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/InteractionGraph.py to InteractionGraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Optimizers.py to Optimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py to tst_mmtbx_reduce_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/reduce/Movers.py to Movers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/cif_parser.py to cif_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/chemical_components/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_scaler.py to tst_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py to f_model_all_scales.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py to multi_mask_bulk_solvent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py to kbu_refinery.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py to bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py to tst_flat_nonuniform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example2.py to example2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/example.py to example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py to tst_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py to tst_bulk_solvent_and_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py to tst_fit_kexpb_to_ktotal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/mosaic.py to mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/scaler.py to scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py to tst_kb_sol_u_star_fd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py to tst_aniso_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/real_space/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/domains_from_pae.py to domains_from_pae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/altloc.py to altloc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/clash.py to clash.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/asa.py to asa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/sphere_surface_sampling.py to sphere_surface_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/topology.py to topology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/geometry/shared_types.py to shared_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/twin_f_model.py to twin_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/twinning/probabalistic_detwinning.py to probabalistic_detwinning.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/find_peaks.py to find_peaks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rsr/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/kinemage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_utils.py to ncs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/cartesian_restraints.py to cartesian_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_search.py to ncs_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/tncs.py to tncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py to ncs_restraints_group_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs.py to ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ncs_params.py to ncs_params.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ncs/ligands.py to ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/grid2d.py to grid2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/rotatable_bonds.py to rotatable_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/tst_switch_rotamers.py to tst_switch_rotamers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/fab_elbow_angle.py to fab_elbow_angle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/utils/ntc.py to ntc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ias/tst_ias.py to tst_ias.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/AtomTypes.py to AtomTypes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py to tst_mmtbx_probe_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py to CompareOriginalAndNewProbeAtomInfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/probe/Helpers.py to Helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename_old.py to suitename_old.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/undowser.py to undowser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/evalurama.py to evalurama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate.py to rna_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rama_z.py to rama_z.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/reduce2.py to reduce2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/validate_ligands.py to validate_ligands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ramalyze.py to ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probe2.py to probe2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/clashscore.py to clashscore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_validation.py to ss_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ss_idealization.py to ss_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/ntc_validation.py to ntc_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/chiral_validation.py to chiral_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/pdbtools.py to pdbtools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_puckers.py to rna_validate_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/polder.py to polder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_suites.py to rna_validate_suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/probescore_ligand.py to probescore_ligand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/omegalyze.py to omegalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/hydrogenate.py to hydrogenate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cablam.py to cablam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/quantum_interface.py to quantum_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/cbetadev.py to cbetadev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/process_predicted_model.py to process_predicted_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rna_validate_bonds.py to rna_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/mp_validate_bonds.py to mp_validate_bonds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/prepare_pdb_deposition.py to prepare_pdb_deposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/barbed_wire_analysis.py to barbed_wire_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/rotalyze.py to rotalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/water_b_factors.py to water_b_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/arginine_geometry.py to arginine_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/programs/comparama.py to comparama.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py to tst_carbo_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py to hydrogen_restrictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py to tst_protein_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py to tst_geo_reduce_for_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_utils.py to glyco_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/server.py to server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_types.py to cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py to tst_rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_setup.py to linking_setup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py to glyco_chiral_values.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py to tst_glyco_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_triage.py to tst_cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/idealized_aa.py to idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py to tst_neutron_distance.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/bondlength_defaults.py to bondlength_defaults.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_mixins.py to linking_mixins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py to tst_iron_sulfur_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py to tst_correct_hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py to tst_superpose_ideal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py to tst_all_cif_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_paral_geo.py to tst_paral_geo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py to conformation_dependent_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py to tst_idealized_aa.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py to tst_metal_coordination.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/linking_utils.py to linking_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py to tst_pdb_interpretation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py to tst_pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_chg.py to tst_chg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py to tst_tyr_from_gly_and_bnz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/conv_v2_v3.py to conv_v2_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py to correct_hydrogen_geometries.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py to tst_rna_dna_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/pdb_interpretation.py to pdb_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py to rna_sugar_pucker_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py to populate_auto_linking_origin_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/rotamer_utils.py to rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_linking.py to tst_linking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py to tst_pdb_interpretation_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_selection.py to tst_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py to tst_glyco_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/cif_triage.py to cif_triage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_server.py to tst_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py to tst_pdb_interpretation_ncs_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_cif_types.py to tst_cif_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py to tst_rotamer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py to tst_deuterium_terminii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_utils.py to ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_ready_set_utils.py to tst_ready_set_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/xtal_screens.py to xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/chemistry.py to chemistry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/ready_set_basics.py to ready_set_basics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/hierarchy_utils.py to hierarchy_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/tst_xtal_screens.py to tst_xtal_screens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/electrons.py to electrons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/ligands/rdkit_utils.py to rdkit_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/xmanip.py to xmanip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_masks.py to tst_masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/masks/tst_asu_mask.py to tst_asu_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/make_library.py to make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/merge_models.py to merge_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/extend_sidechains.py to extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/minimize_chain.py to minimize_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/cablam_idealization.py to cablam_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains_2.py to tst_extend_sidechains_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_extend_sidechains.py to tst_extend_sidechains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/tst_make_library.py to tst_make_library.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/custom_gm.py to custom_gm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/ccd.py to ccd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py to berkeley_ramalyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/starting_conformations.py to starting_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_closure/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/lifi.py to lifi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/ligands/tst_00.py to tst_00.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/building/loop_idealization.py to loop_idealization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/invariant_domain.py to invariant_domain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenamedefs.py to suitenamedefs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitename.py to suitename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninput.py to suiteninput.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/dualparse.py to dualparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suites.py to suites.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/mainchain.py to mainchain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitealyze.py to suitealyze.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/diangle.py to diangle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suiteninit.py to suiteninit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/transdent.py to transdent.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/suitename/suitenout.py to suitenout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/tst_hbond.py to tst_hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/skew_kurt_plot.py to skew_kurt_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/data_filtering.py to data_filtering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/nci/hbond.py to hbond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/sidechain_angles.py to sidechain_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/nqh.py to nqh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/graphics.py to graphics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/n_dim_table.py to n_dim_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py to tst_rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py to tst_geostd_vs_sidechain_angles_props.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval.py to ramachandran_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py to ramachandran_eval_deprecated.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/mmtbx/rotamer/rotamer_eval.py to rotamer_eval.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/cspad.py to cspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/xtc.py to xtc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/rayonix.py to rayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py to cspad_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/legacy_metrology/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/detector/jungfrau.py to jungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/construct_frame.py to construct_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/energy_scan_notch_finder.py to energy_scan_notch_finder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/util/time.py to time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/serialtbx/mono_simulation/max_like.py to max_like.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/viewers/chimerax.py to chimerax.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/qttbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/make_install_HKLviewer_ChimeraX.py to make_install_HKLviewer_ChimeraX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/hklview.py to hklview.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/compare_datasets.py to compare_datasets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/visualize_r_factors.py to visualize_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/multiplicity_viewer.py to multiplicity_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/model_viewer.py to model_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/command_line/qttbx.view_structure.py to qttbx.view_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/jsview_3d.py to jsview_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklviewer_gui.py to hklviewer_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py3.py to webbrowser_messenger_py3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/display2.py to display2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/cmdlineframes.py to cmdlineframes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt.py to qt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/tool.py to tool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/chimeraX_wheel_src/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/hklview_frame.py to hklview_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/qt_chromium_check.py to qt_chromium_check.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/default_user_preset_buttons.py to default_user_preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/preset_buttons.py to preset_buttons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/webbrowser_messenger_py2.py to webbrowser_messenger_py2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/helpers.py to helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtricorder_runner.py to xtricorder_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/HKLviewer.py to HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklviewer/xtriage_runner.py to xtriage_runner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/map_viewer.py to map_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/qttbx/xray_structure_viewer.py to xray_structure_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py to tst_HKLviewerQtGuiBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py to tst_HKLviewerOSbrowserBinFSigF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_hklinfo.py to tst_hklinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py to tst_HKLviewerQtGuiSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py to tst_HKLviewerOSbrowserSliceK-9.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tst_websocket.py to tst_websocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/regression/tests_HKLviewer.py to tests_HKLviewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/frames.py to frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_2d.py to view_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/comparison.py to comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/hklview/view_3d.py to view_3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/HKLinfo.py to HKLinfo.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/crys3d/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_utils.py to progress_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/simulate.py to simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/progress_support.py to progress_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/split_pickles.py to split_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/xpp/isoform.py to isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/simulate_partial_data.py to simulate_partial_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_per_frame_wilson.py to cluster_per_frame_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_42.py to cluster_42.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_intensity_statistics.py to cluster_intensity_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_unit_cell.py to cluster_unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/command_line/cluster_visualise_orientations.py to cluster_visualise_orientations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/api.py to api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster_groups.py to cluster_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/clustering/singleframe.py to singleframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/cspad_cbf_tbx.py to cspad_cbf_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/detector/metrology2phil.py to metrology2phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xtc_process.py to cxi_xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_circular_gain_mask.py to cspad_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence.py to cspad_detector_congruence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mask.py to make_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_process.py to xtc_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/get_next_trial_id.py to get_next_trial_id.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_mpi_submit.py to cxi_mpi_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_unpickler.py to frame_unpickler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/print_pickle.py to print_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/subtract_background.py to subtract_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_bar.py to xpp_progress_bar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_detectors.py to monitor_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py to cxi_stream_to_pickle.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:23: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:24: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:33: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:41: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:42: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:45: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:48: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/cxi_stream_to_pickle.py:51: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_congruence2.py to cspad_detector_congruence2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/upload_mtz.py to upload_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/FEE_average_plot.py to FEE_average_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pbs.py to cxi_pbs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trumpet_plots.py to trumpet_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/overlay_spectra.py to overlay_spectra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/view_pixel_histograms.py to view_pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants_cbf.py to quadrants_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_view.py to cxi_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_calibdir2cbfheader.py to cxi_calibdir2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map_cbf.py to convert_gain_map_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/striping.py to striping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_statistics.py to cspad_detector_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_isoform.py to xpp_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_merge.py to cxi_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_display_metrology.py to cxi_display_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_generate_circular_gain_mask.py to cxi_generate_circular_gain_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_psana.py to cxi_psana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cctbx_integration_pickle_viewer.py to cctbx_integration_pickle_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xtc_dump.py to xtc_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xfel_process.py to xfel_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cspad_pinwheel.py to cxi_cspad_pinwheel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_cbfheader2slaccalib.py to cxi_cbfheader2slaccalib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cbf_average.py to cbf_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_optical2cbfheader.py to cxi_optical2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_parameters.py to cxi_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/find_highres_shots.py to find_highres_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/runs_sentinel.py to runs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/mpi_average.py to mpi_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_simulate.py to xpp_simulate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/h5_average.py to h5_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/frame_extractor.py to frame_extractor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_slaccalib2cbfheader.py to cxi_slaccalib2cbfheader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/beamcenter.py to beamcenter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jungfrau_metrics.py to jungfrau_metrics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_json_to_cbf_def.py to experiment_json_to_cbf_def.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/monitor_trials.py to monitor_trials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/xpp_progress_detail.py to xpp_progress_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/smooth_spectrum.py to smooth_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_apply_metrology.py to cxi_apply_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/auto_submit.py to auto_submit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/quadrants.py to quadrants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_lsf.py to cxi_lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py to detector_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1124: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1126: SyntaxWarning: invalid escape sequence '\D' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1266: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1267: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1268: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1294: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1295: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/command_line/detector_residuals.py:1296: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_spots.py to cxi_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_manager.py to experiment_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pickle2cbf.py to cxi_pickle2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_detector_format_versions.py to cxi_detector_format_versions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/stills_merge.py to stills_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_diff.py to cxi_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/plot_to_subpixel.py to plot_to_subpixel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_calibration.py to fee_calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/launch_fxs.py to launch_fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_mar_mask.py to make_mar_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/make_dials_mask.py to make_dials_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/calc_gain_ratio.py to calc_gain_ratio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_index.py to cxi_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_pyana.py to cxi_pyana.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_detector_shifts.py to cspad_detector_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/list_db_metadata.py to list_db_metadata.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cspad_cbf_metrology.py to cspad_cbf_metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/convert_gain_map.py to convert_gain_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/or_mask.py to or_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/trial_stats.py to trial_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_plotcv.py to cxi_plotcv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/jobs_sentinel.py to jobs_sentinel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py to experiment_residuals.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/command_line/experiment_residuals.py:203: SyntaxWarning: invalid escape sequence '\D' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/recompute_mosaicity.py to recompute_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/fee_view.py to fee_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/riso.py to riso.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/metrology.py to metrology.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/cxi_xmerge.py to cxi_xmerge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/command_line/filter_experiments_by_rmsd.py to filter_experiments_by_rmsd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark10.py to mark10.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark0.py to mark0.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/panel_fitting.py to panel_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark3.py to mark3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/legacy_scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py to flatfile.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1022: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1024: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1026: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/xfel/metrology/flatfile.py:1028: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/quadrant.py to quadrant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/metrology/mark1.py to mark1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/drift.py to drift.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/split_detector.py to split_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/mp.py to mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/reflection_length.py to reflection_length.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/show_spot_separation.py to show_spot_separation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_file_matcher.py to dials_file_matcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/cctbx_xfel_installer.py to cctbx_xfel_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/weather.py to weather.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/dials_pickle_reader.py to dials_pickle_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/kapton_2019_correction_frame_frame_plugin.py to kapton_2019_correction_frame_frame_plugin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/util/image_pickle_locator.py to image_pickle_locator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_updated_rs.py to postrefinement_updated_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/test_cluster.py to test_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/Cluster.py to Cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/SingleFrame.py to SingleFrame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/clustering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/status_plot.py to status_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/trials_plot.py to trials_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/gfx/wx_detectors.py to wx_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/completeness_plot.py to completeness_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/strong_zulu.py to strong_zulu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/trumpet_plot.py to trumpet_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/command_line/einsle.py to einsle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/average_spots.py to average_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_factory.py to postrefinement_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_hybrid_rs.py to postrefinement_hybrid_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/merging_utils.py to merging_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py to cxi_cc.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cxi_cc.py:132: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_powder_arcs.py to display_powder_arcs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/postrefinement_legacy_rs.py to postrefinement_legacy_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/spectra_filter.py to spectra_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/display_spots.py to display_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_radial_average.py to mod_radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/display_calib.py to display_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_pulnix_dump.py to mod_pulnix_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_info.py to mod_event_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hdf5.py to mod_hdf5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_v2.py to mod_spectrum_filter_v2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump_bitmap.py to mod_dump_bitmap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_histograms.py to xes_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_view.py to mod_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_finalise.py to xes_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_onecolor_spectrum_filter.py to mod_onecolor_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_illumination_filter.py to mod_illumination_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_hitfind.py to mod_hitfind.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/histogram_finalise.py to histogram_finalise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py to mod_filter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:52: SyntaxWarning: invalid escape sequence '\d' /usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_filter.py:53: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_dump.py to mod_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter.py to mod_spectrum_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_daq_status.py to mod_daq_status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_event_code.py to mod_event_code.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/xes_faster_histograms.py to xes_faster_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_mar.py to mod_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/hitfinder_tbx.py to hitfinder_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_param.py to mod_param.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_average.py to mod_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_ledge.py to mod_ledge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/pixel_histograms.py to pixel_histograms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_spectrum_filter_remote_only.py to mod_spectrum_filter_remote_only.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/cspad_tbx.py to cspad_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/average_tbx.py to average_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_image_dict.py to mod_image_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/parse_calib.py to parse_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/common_mode.py to common_mode.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/rayonix_tbx.py to rayonix_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/cspad_ana/mod_xes.py to mod_xes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/integrate_image_api.py to integrate_image_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/cxi/data_utils.py to data_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/read_geom.py to read_geom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_cxigeom2nexus.py to agipd_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/agipd_from_defs.py to agipd_from_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/euxfel/write_composite_image.py to write_composite_image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_index.py to mpi_fxs_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/fxs.py to fxs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_bg.py to mpi_fxs_bg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_mask.py to mpi_fxs_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_launch.py to mpi_fxs_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_calib.py to mpi_fxs_calib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/mpi_fxs_c2.py to mpi_fxs_c2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_hit.py to pnccd_hit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/pnccd_ana/pnccd_tbx.py to pnccd_tbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/amo/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/test_3_gaussian.py to test_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/vonHamos/fit_3_gaussian.py to fit_3_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_scraper.py to spotfinder_scraper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_init.py to xfel_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/spotfinder_plotter.py to spotfinder_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py to xfel_gui_plotter.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:393: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:395: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_plotter.py:397: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/run_stats_plotter.py to run_stats_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_controls.py to xfel_gui_controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/xfel_gui_dialogs.py to xfel_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/tooltips.py to tooltips.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/timeit.py to timeit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/components/submission_tracker.py to submission_tracker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/rungroup.py to rungroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/experiment.py to experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/frame_logging.py to frame_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/job.py to job.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dxtbx_db.py to dxtbx_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/stats.py to stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/trial.py to trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/tag.py to tag.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py to merging_log_scraper.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:106: SyntaxWarning: invalid escape sequence '\A' /usr/lib/python3.12/dist-packages/xfel/ui/db/merging_log_scraper.py:189: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/xfel_db.py to xfel_db.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/task.py to task.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/shifter_templates.py to shifter_templates.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/db/cfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats.py to plot_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud_from_experiments.py to plot_uc_cloud_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_isoform_cloud.py to plot_isoform_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_uc_cloud.py to plot_uc_cloud.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_in_gui.py to plot_run_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/xfel_gui_launch.py to xfel_gui_launch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_spotfinder_stats_in_gui.py to plot_spotfinder_stats_in_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/print_run_stats.py to print_run_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_reflection_stats.py to plot_reflection_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/ui_server.py to ui_server.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/plot_run_stats_from_experiments.py to plot_run_stats_from_experiments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/command_line/get_hit_timestamps.py to get_hit_timestamps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/ui/phil_patch.py to phil_patch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/jf16m_cxigeom2nexus.py to jf16m_cxigeom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/sync_jf16m_geometry.py to sync_jf16m_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/swissfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/mono_treatment.py to mono_treatment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/mono_simulation/max_like_pos_neg.py to max_like_pos_neg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/solve_orientation.py to solve_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_process.py to small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/xfel_small_cell_process.py to xfel_small_cell_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot_prep.py to cake_plot_prep.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/candidate_cells.py to candidate_cells.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/small_cell_index.py to small_cell_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/powder_from_spots.py to powder_from_spots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/command_line/cake_plot.py to cake_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/write_orientation_arrows.py to write_orientation_arrows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/powder_util.py to powder_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/small_cell/small_cell.py to small_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/graph.py to graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/multiproc_temp_parame_opt.py to multiproc_temp_parame_opt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/parameter_optimizer.py to parameter_optimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/graph_proc/components.py to components.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/pal/jf4m_geom2nexus.py to jf4m_geom2nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/phil_validation.py to phil_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/general_fcalc.py to general_fcalc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/mpi_integrate.py to mpi_integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/command_line/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/absorption.py to absorption.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/tables/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/report/graphs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/merger.py to merger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/merge/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/group_reflections.py to group_reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/group/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/lunus.py to lunus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/lunus/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/experiment_scaler.py to experiment_scaler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/scale/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_loader.py to file_loader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_load_calculator.py to file_load_calculator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/file_lister.py to file_lister.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/input/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py to intensity_resolution_statistics_cxi.cpython-312.pyc /usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics_cxi.py:350: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/unit_cell_statistics.py to unit_cell_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/experiment_resolution_statistics.py to experiment_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/beam_statistics.py to beam_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_histogram.py to intensity_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/intensity_resolution_statistics.py to intensity_resolution_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/statistics/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/phil/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/load_balancer.py to load_balancer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/balance/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/integrate.py to integrate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/integrate/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/reflection_table_utils.py to reflection_table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/resolution_binner.py to resolution_binner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/crystal_model.py to crystal_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/model/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/validation/application.py to application.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/output/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/worker.py to worker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_helper.py to mpi_helper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_abc.py to reindex_to_abc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/token_passing_left_right.py to token_passing_left_right.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/df_cosym.py to df_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/aux_cosym.py to aux_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/polarization.py to polarization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_cosym.py to reindex_cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym_tranch_align.py to cosym_tranch_align.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/compare_results.py to compare_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/reindex_to_reference.py to reindex_to_reference.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/cosym.py to cosym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/modify/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_sr.py to error_modifier_sr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ha14.py to error_modifier_ha14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/error_modifier_ev11.py to error_modifier_ev11.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/errors/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/memory_usage.py to memory_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/utils/data_counter.py to data_counter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/reflection_filter.py to reflection_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/experiment_filter.py to experiment_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/filter/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/cell_listing.py to cell_listing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/tdata/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs2.py to postrefinement_rs2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/postrefinement_rs.py to postrefinement_rs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/application/postrefine/factory.py to factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/predictions_to_edges.py to predictions_to_edges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/statistics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/error_modeler_base.py to error_modeler_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/reduced_chi_squared.py to reduced_chi_squared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine.py to sdfac_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate_and_refine.py to sdfac_propagate_and_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_levmar.py to sdfac_refine_levmar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_propagate.py to sdfac_propagate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/sdfac_refine_lbfgs.py to sdfac_refine_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/error_model/errors_from_residuals.py to errors_from_residuals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/algorithms/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_fs.py to merging_database_fs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_flex.py to merging_database_flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database.py to merging_database.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/database/merging_database_sqlite3.py to merging_database_sqlite3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/merging/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/psana_cctbx.py to psana_cctbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/xfel/lcls_api/exercise_api.py to exercise_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_dials.py to apache_dials.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_bcsb.py to apache_bcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache.py to apache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/adsc_client.py to adsc_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/apache_utils.py to apache_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/bcsb_client_example.py to bcsb_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/multipart_encoder.py to multipart_encoder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_read_file.py to spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/pilatus_client.py to pilatus_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/general_client_example.py to general_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/specific_client_example.py to specific_client_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/spotfinder_server_client_push.py to spotfinder_server_client_push.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py to mp_spotfinder_server_is_alive.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/imagefiles.py to imagefiles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/diffraction/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py to mp_spotfinder_server_read_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/sweep_strength.py to sweep_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/thin_client.py to thin_client.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/command_line/find_active_area.py to find_active_area.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/sphere_formulae.py to sphere_formulae.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/math_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/core_toolbox/close_spots_detail.py to close_spots_detail.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/exception.py to exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/signal_strength.py to signal_strength.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/stats_distl.py to stats_distl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_phil.py to cxi_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py to correction_vector_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/xfel/cxi_run3.py to cxi_run3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/image_viewer.py to image_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/wrappers.py to wrappers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py to method2_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py to ice2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py to ice_nztt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py to spotreporter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py to practical_heuristics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fftw3tbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/heavy_atoms.py to heavy_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/app.py to app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/segmentedctrl.py to segmentedctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/symmetry_dialog.py to symmetry_dialog.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/xtriage.py to xtriage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/inspect_r_free_flags.py to inspect_r_free_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/wxpython.py to wxpython.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_statistics.py to pdb_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py to plot_anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/plan_sad_experiment.py to plan_sad_experiment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/show_file_info.py to show_file_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py to anomalous_differences_histogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/command_line/loggraph.py to loggraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/listeditor.py to listeditor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/process_control.py to process_control.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/sequence_view.py to sequence_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/blast.py to blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/reports/pdb_symmetry.py to pdb_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/b_plot.py to b_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/layout.py to layout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/mtz_dump.py to mtz_dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/path_dialogs.py to path_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/windows.py to windows.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/metallicbutton.py to metallicbutton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/misc_dialogs.py to misc_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/bitmaps.py to bitmaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/qstat_view.py to qstat_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/misc_ctrls.py to misc_ctrls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/boolctrl.py to boolctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tree.py to tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/tribool.py to tribool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strings.py to strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/unit_cell.py to unit_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/strctrl.py to strctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/ints.py to ints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floatctrl.py to floatctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/array_label.py to array_label.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/symop.py to symop.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/numbers.py to numbers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/text_base.py to text_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/floats.py to floats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/simple_dialogs.py to simple_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice_multi.py to choice_multi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py to choice.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/phil_controls/choice.py:18: SyntaxWarning: invalid escape sequence '\*' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/intctrl.py to intctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/phil_controls/space_group.py to space_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/monitor.py to monitor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/icons.py to icons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/checklistctrl.py to checklistctrl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/pdb_editor.py to pdb_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/custom_restraints.py to custom_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/adp_statistics.py to adp_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/wx4_compatibility.py to wx4_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/browser.py to browser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/info_panels.py to info_panels.cpython-312.pyc /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:208: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/wxtbx/info_panels.py:418: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/anomalous_scattering.py to anomalous_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/ensemble_validation.py to ensemble_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/emringer.py to emringer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/plots/molprobity.py to molprobity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon.py to polygon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/wxtbx/polygon_db_viewer.py to polygon_db_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bandpass/simulated_annealing.py to simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/outlier_spots/fit_distribution.py to fit_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py to tst_coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_converter.py to coordinate_frame_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py to coordinate_frame_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_partial_derivatives.py to tst_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py to tst_bragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py to tst_utils_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_ewald_sphere.py to tst_ewald_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/diffraction/tst_predict.py to tst_predict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/controls.py to controls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_frame.py to spotfinder_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/drivers.py to drivers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/spotfinder_wrap.py to spotfinder_wrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/processing.py to processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/pixels3d.py to pixels3d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/indexing.py to indexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/calibration.py to calibration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/dataset.py to dataset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/results_base.py to results_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/integration.py to integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/integration_core.py to integration_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dials_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/ersatz_misset.py to ersatz_misset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2a.py to uc1_2a.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2.py to uc1_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py to uc1_2_positions_idx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/compare_mosflm_xds.py to compare_mosflm_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_positions.py to uc1_2_positions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/uc1_2_validate.py to uc1_2_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py to instrument_specifics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py to tst_detector_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/bpcx/detector_model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/slip_viewer.py to slip_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.explore_completeness.py to simage.explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/viewer.py to viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/example_viewer.py to example_viewer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.solver.py to simage.solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.create.py to simage.create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/command_line/simage.wx_display.py to simage.wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_pdf.py to sim_pdf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/constants.py to constants.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/tst_xfel1_simple.py to tst_xfel1_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simulation/sim_utils.py to sim_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/uc_frame.py to uc_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/ring_frame.py to ring_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/tile_generation.py to tile_generation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/pyslip.py to pyslip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/score_frame.py to score_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/calibration_frame.py to calibration_frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_display.py to slip_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py to slip_viewer_image_factory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py to example_frame_plugin_hidden.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/slip_viewer/frame.py to frame.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/phil_preferences.py to phil_preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/preferences.py to preferences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/phil/scope.py to scope.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/g_gradients.py to g_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py to parameter_reduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/sgtbx_adaptor.py to sgtbx_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/symmetry/subgroup.py to subgroup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/spot_shape.py to spot_shape.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/speckfinder.py to speckfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/stats_index.py to stats_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/index.py to index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/pixel_spread.py to pixel_spread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/new_horizons/oscillation_shots.py to oscillation_shots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/tst_sublattice.py to tst_sublattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/sublattice_support/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_auto_monoscan.py to tst_auto_monoscan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/tst_dataset1.py to tst_dataset1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing/do_index.py to do_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_detection.py to outlier_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/nearest_neighbor.py to nearest_neighbor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/test_dps.py to test_dps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/force_cell.py to force_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/lattice.py to lattice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/outlier_procedure.py to outlier_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/indexing_api/tools.py to tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/slip_helpers.py to slip_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py to dials_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/stills_integration.py to stills_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py to deltapsi_refinement_preceding_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/stills/simple_integration.py to simple_integration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/dual_resolution_helpers.py to dual_resolution_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/apps/spot_markup.py to spot_markup.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/silicon.py to silicon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/solver.py to solver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/explore_completeness.py to explore_completeness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/integrate_crude.py to integrate_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/create.py to create.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_labelit_index.py to run_labelit_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/refine_uc_cr.py to refine_uc_cr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/wx_display.py to wx_display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/simage/run_spotfinder.py to run_spotfinder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/tst_iotbx_converter.py to tst_iotbx_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/constrainment.py to constrainment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/sampling.py to sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/zuoreduction.py to zuoreduction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/cell_assessment.py to cell_assessment.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/lepage.py to lepage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/rstbx/dps_core/basis_choice.py to basis_choice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py to tst_resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_mask.py to tst_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_scales_errors.py to refine_scales_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation.py to tst_interpolation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py to tst_atom_radius_as_central_peak_width.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_interpolation_2.py to tst_interpolation_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/prepare_map_for_docking.py to prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/map_symmetry.py to map_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_ccp.py to tst_ccp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_loft.py to tst_loft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py to tst_get_percentile_cutoffs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/real_space_refinement_simple.py to real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mask.py to mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_target_and_gradients.py to tst_target_and_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py to tst_peak_volume_estimate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py to tst_real_space_refinement_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_asymmetric_map.py to tst_asymmetric_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/mem.py to mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_bcr.py to tst_bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py to tst_map_peak_3d_as_2d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/box.py to box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/bcr/bcr.py to bcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/refine_sharpening.py to refine_sharpening.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py to resolution_from_map_and_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/maptbx/tst_atom_curves.py to tst_atom_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/io_utils.py to io_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/dispatcher.py to dispatcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/replay.py to replay.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/frac_cart.py to frac_cart.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/shelx.py to shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/iotbx_cif_validate.py to iotbx_cif_validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_hand.py to change_hand.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/browse_settings.py to browse_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors.py to structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/explore_symmetry.py to explore_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/libtbx_help.py to libtbx_help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py to guide_to_notation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_asu.py to jv_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jv_index.py to jv_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/web_links.py to web_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/asu_gallery/jvx.py to jvx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/multiple_cell.py to multiple_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/change_setting.py to change_setting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/wyckoff.py to wyckoff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/structure_factors_pdb.py to structure_factors_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/web/cgi_utils.py to cgi_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/coordination_sequences.py to coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/find_best_cell.py to find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py to burzlaff_zimmermann_dewolff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/direct_space_asu.py to direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py to tst_distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/super_cell.py to super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/tst_super_cell.py to tst_super_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal/close_packing.py to close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observation_types.py to observation_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/target_functors.py to target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py to from_scatterers_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/global_counters.py to global_counters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_fft.py to gradients_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_direct.py to gradients_direct.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py to from_scatterers_direct_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers.py to from_scatterers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradient_flags.py to gradient_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients_base.py to gradients_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/gradients.py to gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py to from_scatterers_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/r1.py to r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_r1.py to tst_r1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py to tst_shelxl_wght_ls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/scatterer.py to scatterer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/observations/tst_observations.py to tst_observations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/minimization.py to minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/xray/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py to generate_henke_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py to generate_sasaki_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/dmtbx.py to dmtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/van_der_waals_radii.py to van_der_waals_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/icsd_radii.py to icsd_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/e_scattering.py to e_scattering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/neutron.py to neutron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/distance_based_connectivity.py to distance_based_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/covalent_radii.py to covalent_radii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py to read_custom_scattering_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/fp_fdp.py to fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/chemical_elements.py to chemical_elements.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/tiny_pse.py to tiny_pse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/formula.py to formula.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/sasaki.py to sasaki.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/henke.py to henke.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/wavelengths.py to wavelengths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_section61_io.py to itvc_section61_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py to create_n_gaussian_raw_cpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py to itvc_cross_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/hydrogen_plots.py to hydrogen_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/combine_fits.py to combine_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py to format_gaussian_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_approx.py to itvc_approx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_kissel.py to itvc_kissel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/rez_rez_grant.py to rez_rez_grant.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_fits.py to kissel_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/kissel_io.py to kissel_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/e_scattering_plots.py to e_scattering_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/development/itvc_fits.py to itvc_fits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/xray_scattering/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/eltbx/attenuation_coefficient.py to attenuation_coefficient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973.py to gruber_1973.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/krivy_gruber_1976.py to krivy_gruber_1976.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/reduction_base.py to reduction_base.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/uctbx/gruber_1973_table_1.py to gruber_1973_table_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_join.py to samosa_join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/precession_view.py to precession_view.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py to find_reticular_twin_laws.cpython-312.pyc /usr/lib/python3.12/dist-packages/cctbx/command_line/find_reticular_twin_laws.py:37: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/form_factor_query.py to form_factor_query.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/samosa_scale.py to samosa_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/cctbx_test_nightly.py to cctbx_test_nightly.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/diffuse.py to diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/space_group_info.py to space_group_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/wavelength_units.py to wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/structure_factor_timings.py to structure_factor_timings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/xray_structure.show.py to xray_structure.show.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py to eltbx.show_fp_fdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/auto_sharpen.py to auto_sharpen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/command_line/segment_and_split_map.py to segment_and_split_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/neutron/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/crystal_orientation.py to crystal_orientation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/math_module.py to math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_weighting_schemes.py to tst_weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sampled_model_density.py to tst_sampled_model_density.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_show_cosets.py to tst_show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wilson_plot.py to tst_wilson_plot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_expand_to_p1.py to tst_expand_to_p1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_krivy_gruber.py to tst_krivy_gruber.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py to tst_maptbx_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_math_module.py to tst_math_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py to tst_map_weights_for_symmetry_summation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_find_best_cell.py to tst_find_best_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py to tst_prepare_map_for_docking.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_diffuse.py to tst_diffuse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_wavelength_units.py to tst_wavelength_units.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py to tst_geometry_restraints_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_data_manipulation.py to tst_miller_data_manipulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_scaling.py to tst_direct_scaling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py to tst_sgtbx_special_op_simplifier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem_2.py to tst_mem_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fast_nv1995.py to tst_fast_nv1995.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py to tst_fourier_transform_real_part_at_x.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pointgroup_tools.py to tst_pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_r_free_utils.py to tst_r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_triplet_generator.py to tst_triplet_generator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_fft_map.py to tst_miller_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_loc_res.py to tst_loc_res.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py to tst_adp_aniso_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_emma.py to tst_emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sphericity.py to tst_sphericity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_denominators.py to tst_sgtbx_denominators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_web_change_basis.py to tst_web_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py to tst_sgtbx_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py to tst_itvb_2001_table_a1427_hall_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization.py to tst_xray_minimization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_create_models_or_maps.py to tst_create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints.py to tst_geometry_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py to tst_reciprocal_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_lookup_utils.py to tst_miller_lookup_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_minimization_failure.py to tst_xray_minimization_failure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_pickling.py to tst_grm_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_mask.py to tst_maptbx_mask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_mem.py to tst_mem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_fast_gradients.py to tst_xray_fast_gradients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py to tst_sgtbx_tidy_pickling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_map_is_periodic.py to tst_map_is_periodic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_harker.py to tst_sgtbx_harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py to tst_sgtbx_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_twin_target.py to tst_twin_target.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py to tst_sf_low_res_accuracy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_f_model.py to tst_f_model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grouped_data.py to tst_grouped_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_grm_modifications.py to tst_grm_modifications.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_coordination_sequences.py to tst_coordination_sequences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_geometry_restraints_2.py to tst_geometry_restraints_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray.py to tst_xray.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_derivatives.py to tst_xray_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_refine_xray_curvs.py to tst_refine_xray_curvs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_change_basis.py to tst_change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_french_wilson.py to tst_french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal.py to tst_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_pair_asu_table.py to tst_pair_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_maptbx_box.py to tst_maptbx_box.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py to tst_adp_constraints_cartesian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity.py to tst_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx.py to tst_sgtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_direct_space_asu.py to tst_direct_space_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_xray_target_functors.py to tst_xray_target_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py to tst_fcalc_fft_stability.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_statistics_graphs.py to tst_statistics_graphs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py to tst_sgtbx_site_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_close_packing.py to tst_crystal_close_packing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py to tst_miller_merge_equivalents.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_adp_constraints.py to tst_adp_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller.py to tst_miller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py to tst_space_group_type_tidy_cb_op_t.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py to tst_crystal_asu_clusters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py to tst_miller_double_step_filtration.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_amplitude_normalisation.py to tst_amplitude_normalisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_miller_statistics.py to tst_miller_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/regression/tst_connectivity_allsym.py to tst_connectivity_allsym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/quartz_structure.py to quartz_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/reduced_cell_two_folds.py to reduced_cell_two_folds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_puckers.py to random_puckers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_phase_o_phrenia.py to tst_phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_subgroups.py to space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_2.py to structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py to exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py to find_distances_using_cpp_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py to convert_ccp4_symop_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/neutron_structure_factors.py to neutron_structure_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py to tst_structure_factor_derivatives_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/steve_collins.py to steve_collins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py to g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/view_fft_map.py to view_fft_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_transform.py to miller_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/hirshfeld_test.py to hirshfeld_test.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py to sites_least_squares_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py to u_star_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py to site_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py to sites_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_space_subgroups.py to tst_space_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives.py to structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/location_part.py to location_part.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_table.py to site_symmetry_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/getting_started.py to getting_started.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/phase_o_phrenia.py to phase_o_phrenia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/maximum_subgroups.py to maximum_subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/adp_symmetry_constraints.py to adp_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/map_skewness.py to map_skewness.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py to tst_structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/random_f_calc.py to random_f_calc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py to trigonal_r_vs_tetragonal_i.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/space_group_matrices.py to space_group_matrices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/ccp4_map.py to ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_4.py to structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_consistency_checks.py to cr2o3_consistency_checks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/f_model_example.py to f_model_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/analyze_adp.py to analyze_adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/change_hand_p31.py to change_hand_p31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/lebedev_2005_perturbation.py to lebedev_2005_perturbation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/miller_common_sets.py to miller_common_sets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/structure_factor_derivatives_3.py to structure_factor_derivatives_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/sub_group_graph.py to sub_group_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py to list_non_principal_continuous_shifts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/all_axes.py to all_axes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py to tst_g_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/symops_530.py to symops_530.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py to find_sys_abs_equiv_space_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py to g_exp_i_partial_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py to fft_map_electron_density_around_atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py to tst_structure_factor_derivatives_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_utilities.py to data_utilities.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test1.py to test1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/scale.py to scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/join.py to join.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py to per_lattice_postrefinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/sigma_correction.py to sigma_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/tst_permutations.py to tst_permutations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py to test_levenberg_sparse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/task4.py to task4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/data_subset.py to data_subset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/show_results.py to show_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/merging/test_cc_half.py to test_cc_half.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_minimizers.py to unit_cell_minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/unit_cell_refinement.py to unit_cell_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py to le_page_1982_vs_lebedev_2005.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/site_symmetry_constraints.py to site_symmetry_constraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py to tst_exp_i_alpha_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/cr2o3_primitive_cell.py to cr2o3_primitive_cell.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py to tst_structure_factor_derivatives.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/r_free_utils.py to r_free_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/display.py to display.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_map_to_asu_isym.py to tst_map_to_asu_isym.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/reindexing.py to reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/miller/tst_reindexing.py to tst_reindexing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/auto_linking_types.py to auto_linking_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_motif.py to tst_motif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py to tst_process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/base_geometry.py to base_geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/lbfgs.py to lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py to tst_proxy_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py to tst_nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py to tst_angle_derivs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/nonbonded_overlaps.py to nonbonded_overlaps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py to process_nonbonded_proxies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/linking_class.py to linking_class.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry_restraints/standard_cif_links.py to standard_cif_links.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/covariance/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/translation_search.py to translation_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adptbx.py to adptbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/bravais_types.py to bravais_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py to plane_group_reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py to short_cuts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py to facet_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py to cut_plane.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py to generate_cpp_asu_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py to tst_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py to check_redundancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py to reference_table.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/subgroups.py to subgroups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/harker.py to harker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_pg_tools.py to reticular_pg_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/cosets.py to cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sys_abs_equiv.py to sys_abs_equiv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/sub_lattice_tools.py to sub_lattice_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/reticular_twin_laws.py to reticular_twin_laws.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py to rational_matrices_point_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/show_cosets.py to show_cosets.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/symbol_confidence.py to symbol_confidence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/plane_groups.py to plane_groups.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/pointgroup_tools.py to pointgroup_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/sgtbx/literal_description.py to literal_description.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/geometry/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/run_examples.py to run_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/flags.py to flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/adp_restraints/energies.py to energies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/bfgs.py to bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_select_and_pickle.py to cod_select_and_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cif_refine.py to cif_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/eval_iso_vs_refined.py to eval_iso_vs_refined.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/dev.py to dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/pdb_dev.py to pdb_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_dev.py to tst_dev.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tst_bfgs.py to tst_bfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/tardy_adaptor.py to tardy_adaptor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/omz/cod_refine.py to cod_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/anharmonic.py to anharmonic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/euclidean_model_matching.py to euclidean_model_matching.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/statistics.py to statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/merging/brehm_diederichs.py to brehm_diederichs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/multipolar.py to multipolar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/fmt_utils.py to fmt_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx76.py to run_shelx76.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_hl.py to tst_cns_hl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/space_group_option_parser.py to space_group_option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/structure_factor_utils.py to structure_factor_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/github.py to github.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/run_shelx.py to run_shelx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/cns_density_modification.py to cns_density_modification.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/tst_cns_epsilon.py to tst_cns_epsilon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_settings.py to make_settings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/random_structure.py to random_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/make_cns_input.py to make_cns_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/debug_utils.py to debug_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/electron_density_sampling.py to electron_density_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/direct_or_fft.py to direct_or_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/create_models_or_maps.py to create_models_or_maps.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py to approx_amplitude_vs_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/rotation_parameters.py to rotation_parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/macro_mol/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/command_line/dump.py to dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/exercise_compression.py to exercise_compression.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cbflib_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/load.py to load.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/filename.py to filename.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/serialize/xds.py to xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_header.py to print_header.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/install_format.py to install_format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_mask_info.py to show_mask_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image2pickle.py to image2pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_registry.py to show_registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/image_average.py to image_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/print_matching_images.py to print_matching_images.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/read_sequence.py to read_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/detector_superpose.py to detector_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/debug_memory.py to debug_memory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/saturation.py to saturation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/plot_detector_models.py to plot_detector_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/radial_average.py to radial_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/display_parallax_correction.py to display_parallax_correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/overload.py to overload.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/show_matching_formats.py to show_matching_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/command_line/depends_on.py to depends_on.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/dlsnxs2cbf.py to dlsnxs2cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/util/rotate_and_average.py to rotate_and_average.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/flumpy.py to flumpy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/imageset.py to imageset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/beam.py to beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/profile.py to profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/compare.py to compare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers_types.py to detector_helpers_types.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector_helpers.py to detector_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan_helpers.py to scan_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/goniometer.py to goniometer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/crystal.py to crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/detector.py to detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/scan.py to scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/model/experiment_list.py to experiment_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniADSCHF4M.py to FormatCBFMiniADSCHF4M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXIS.py to FormatRAXIS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexus.py to FormatNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPetraP14.py to FormatCBFMiniEigerPetraP14.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSER.py to FormatSER.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVJHSim.py to FormatSMVJHSim.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaRayonix.py to FormatHDF5SaclaRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuPilatus.py to FormatSMVRigakuPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriterESRFID232.py to FormatNXmxEigerFilewriterESRFID232.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFBruker.py to FormatTIFFBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatStill.py to FormatStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFull.py to FormatCBFFull.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLSI19_2.py to FormatNXmxDLSI19_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnNoTS.py to FormatSMVRigakuSaturnNoTS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYmultitile.py to FormatPYmultitile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCDBG.py to FormatSMVADSCDBG.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTileHierarchy.py to FormatCBFMultiTileHierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerMaxIVBio.py to FormatCBFMiniEigerMaxIVBio.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixSPring8.py to FormatTIFFRayonixSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI41.py to TemplatePYCXI41.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigaku.py to FormatSMVRigaku.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200SPring8BL26B1.py to FormatSMVRigakuA200SPring8BL26B1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5PAL.py to FormatHDF5PAL.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxED.py to FormatNXmxED.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS12M.py to FormatCBFMiniPilatusDLS12M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCNoDateStamp.py to FormatSMVADSCNoDateStamp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsuSPring8BL32XU.py to FormatSMVHamamatsuSPring8BL32XU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecifiedStill.py to FormatPYunspecifiedStill.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullByteOffset.py to FormatCBFFullByteOffset.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5.py to FormatHDF5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN445.py to FormatSMVADSCSN445.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN07400090.py to FormatSMVRigakuSaturnSN07400090.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerDLS16MSN160.py to FormatCBFMiniEigerDLS16MSN160.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImage.py to FormatMultiImage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/image.py to image.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPilatusHelpers.py to FormatPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS.py to FormatNXmxDLS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMV.py to FormatSMV.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI32.py to TemplatePYCXI32.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMultiTile.py to FormatCBFMultiTile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVCMOS1.py to FormatSMVCMOS1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMRC.py to FormatMRC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatus.py to FormatCBFFullPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerFixedChi.py to FormatBrukerFixedChi.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN126.py to FormatCBFFullPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatGatanDM4.py to FormatGatanDM4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerChessID7B2.py to FormatCBFMiniEigerChessID7B2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatEDFALS733.py to FormatEDFALS733.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN915.py to FormatSMVADSCSN915.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexus.py to FormatHDF5EigerNearlyNexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFHelpers.py to FormatTIFFHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuA200.py to FormatSMVRigakuA200.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXDS.py to FormatXDS.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCmlfsom.py to FormatSMVADSCmlfsom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI71.py to TemplatePYCXI71.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN119.py to FormatCBFMiniPilatusDLS6MSN119.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDESY6MSN115.py to FormatCBFMiniPilatusDESY6MSN115.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS6MSN100.py to FormatCBFFullPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixXPP.py to FormatTIFFRayonixXPP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI51.py to TemplatePYCXI51.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN.py to FormatSMVADSCSN.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI31.py to TemplatePYCXI31.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN126.py to FormatCBFMiniPilatusDLS6MSN126.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonix.py to FormatTIFFRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN11480296.py to FormatSMVRigakuSaturnSN11480296.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturnSN09040159.py to FormatSMVRigakuSaturnSN09040159.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauHack.py to FormatNexusJungfrauHack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCRayonix.py to FormatXTCRayonix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/cbf_writer.py to cbf_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCMultipleDetectors.py to FormatXTCMultipleDetectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFFullPilatusDLS300KSN104.py to FormatCBFFullPilatusDLS300KSN104.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN100.py to FormatCBFMiniPilatusDLS6MSN100.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVNOIR.py to FormatSMVNOIR.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEigerPhotonFactory.py to FormatCBFMiniEigerPhotonFactory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSPring8_6MSN125.py to FormatCBFMiniPilatusSPring8_6MSN125.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBrukerPhoton.py to FormatBrukerPhoton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI7d.py to TemplatePYCXI7d.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5EigerNearlyNexusSPring8.py to FormatHDF5EigerNearlyNexusSPring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFFRayonixESRF.py to FormatTIFFRayonixESRF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusJungfrauExt.py to FormatNexusJungfrauExt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCJungfrau.py to FormatXTCJungfrau.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISII.py to FormatRAXISII.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMultiImageLazy.py to FormatMultiImageLazy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nxmx_writer.py to nxmx_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN905.py to FormatSMVADSCSN905.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmx.py to FormatNXmx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatROD.py to FormatROD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatBruker.py to FormatBruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/nexus.py to nexus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN442.py to FormatSMVADSCSN442.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusCHESS_6MSN127.py to FormatCBFMiniPilatusCHESS_6MSN127.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCEpix.py to FormatXTCEpix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16M.py to FormatNXmxDLS16M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Lambda.py to FormatHDF5Lambda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatMarIP.py to FormatMarIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTC.py to FormatXTC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114.py to FormatCBFMiniPilatusDLS6MSN114.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/TemplatePYCXI61.py to TemplatePYCXI61.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSNAPSID19.py to FormatSMVADSCSNAPSID19.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatRAXISIVSpring8.py to FormatRAXISIVSpring8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPY.py to FormatPY.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatXTCCspad.py to FormatXTCCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Registry.py to Registry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniEiger.py to FormatCBFMiniEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus3APS19ID6MSN132.py to FormatCBFMiniPilatus3APS19ID6MSN132.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/Format.py to Format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusXXX.py to FormatCBFMiniPilatusXXX.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVHamamatsu.py to FormatSMVHamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMini.py to FormatCBFMini.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBF.py to FormatCBF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN926.py to FormatSMVADSCSN926.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxEigerFilewriter.py to FormatNXmxEigerFilewriter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusDLS6MSN114DMM.py to FormatCBFMiniPilatusDLS6MSN114DMM.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFCspad.py to FormatCBFCspad.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNexusTimepix2M.py to FormatNexusTimepix2M.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN920.py to FormatSMVADSCSN920.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuEiger.py to FormatSMVRigakuEiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatus.py to FormatCBFMiniPilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusHelpers.py to FormatCBFMiniPilatusHelpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatTIFF.py to FormatTIFF.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVTimePix_SU.py to FormatSMVTimePix_SU.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatNXmxDLS16MI03.py to FormatNXmxDLS16MI03.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatPYunspecified.py to FormatPYunspecified.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVRigakuSaturn.py to FormatSMVRigakuSaturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN457.py to FormatSMVADSCSN457.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatDIP2030b.py to FormatDIP2030b.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSC.py to FormatSMVADSC.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5Sacla.py to FormatHDF5Sacla.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatCBFMiniPilatusSOLEILPX16MSN106.py to FormatCBFMiniPilatusSOLEILPX16MSN106.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatHDF5SaclaMPCCD.py to FormatHDF5SaclaMPCCD.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/format/FormatSMVADSCSN928.py to FormatSMVADSCSN928.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/nexus/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache.py to filecache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_2M_S_N_24_0107_Diamond.py to PILATUS_2M_S_N_24_0107_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/data/beamline_defs/PILATUS_300K_S_N_3_0104_Diamond.py to PILATUS_300K_S_N_3_0104_Diamond.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/masking/SmarGonShadowMask.py to SmarGonShadowMask.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/resolution_corners.py to resolution_corners.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/example/to_xds.py to to_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/datablock.py to datablock.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/filecache_controller.py to filecache_controller.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx/sequence_filenames.py to sequence_filenames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fast_linalg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/std_pair.py to std_pair.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/rational.py to rational.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/tuple.py to tuple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/boost/python.py to python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/gcd.py to gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/divide_by_zero.py to divide_by_zero.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/inexact.py to inexact.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/int_overflow.py to int_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/segmentation_fault.py to segmentation_fault.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py to nested_cpp_loops_with_check_signals.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/show_platform_info.py to show_platform_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/double_overflow.py to double_overflow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/command_line/lcm.py to lcm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py to graph_structure_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/utility.py to utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py to min_cut_max_flow.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py to minimum_cut_enumerate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/breadth_first_search.py to breadth_first_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/metric.py to metric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py to connected_component_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/maximum_clique.py to maximum_clique.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/graph/clustering_algorithm.py to clustering_algorithm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/hybrid_times.py to hybrid_times.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/boost_adaptbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/simple_parser.py to simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/builders.py to builders.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/validation.py to validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py to crystal_symmetry_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/cod_tools.py to cod_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif/restraint_file_merge.py to restraint_file_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pymol.py to pymol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/format.py to format.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_unmerged.py to tst_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py to tst_extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py to extract_from_symmetry_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py to crystal_symmetry_from_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_dano.py to tst_dano.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtz/tst_miller_dict.py to tst_miller_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ranges.py to ranges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.join_fragment_files.py to pdb.join_fragment_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.reflection_reader.py to cns.reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.dump_as_python.py to shelx.dump_as_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/emma.py to emma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_editor.py to reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/lattice_symmetry.py to lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_fasta.py to pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py to crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.sdb_reader.py to cns.sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/csv_as_mtz.py to csv_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_accumulation.py to r_free_flags_accumulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/french_wilson.py to french_wilson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_converter.py to reflection_file_converter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/get_pubmed_citation.py to get_pubmed_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_miller_arrays.py to cif.as_miller_arrays.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/biomt_reconstruction.py to biomt_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/blast_pdb.py to blast_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/patterson_map.py to patterson_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/symmetry_search.py to symmetry_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py to r_free_flags_completion_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif_as_pdb.py to cif_as_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.print_sequence.py to pdb.print_sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz.dump.py to mtz.dump.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/sort_atoms.py to sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.insert_scale_records.py to pdb.insert_scale_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_split_models.py to pdb_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py to flip_symmetric_amino_acids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtz_as_cif.py to mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.validate.py to cif.validate.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_as_cif.py to pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dano_as_amplitudes.py to dano_as_amplitudes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_comparison.py to pdb_labels_comparison.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_xray_structure.py to shelx.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.hierarchy.py to pdb.hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py to cns.transfer_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/shelx.as_cif.py to shelx.as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/mtrix_reconstruction.py to mtrix_reconstruction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/detector_image_as_png.py to detector_image_as_png.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_systematic_absences.py to show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py to explore_metric_symmetry.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:339: SyntaxWarning: invalid escape sequence '\ ' /usr/lib/python3.12/dist-packages/iotbx/command_line/explore_metric_symmetry.py:341: SyntaxWarning: invalid escape sequence '\%' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/show_distances.py to show_distances.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_show_connectivity.py to pdb_show_connectivity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cns_as_mtz.py to cns_as_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_statistics.py to reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_add_conformations.py to pdb_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/build_phil_cache.py to build_phil_cache.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/r_free_flags_as_cns.py to r_free_flags_as_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cif.as_xray_structure.py to cif.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/reindex.py to reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py to pdb.superpose_atoms_by_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.box_around_molecule.py to pdb.box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/xplor.map.show_summary.py to xplor.map.show_summary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/dtrek.to_cns.py to dtrek.to_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_labels_diff.py to pdb_labels_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py to pdb.link_as_geometry_restraints_edits.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py to pdb.superpose_centers_of_mass.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/distance_least_squares.py to distance_least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.as_xray_structure.py to pdb.as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/cbf_read.py to cbf_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_remediator.py to pdb_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/isomorphous_difference_patterson.py to isomorphous_difference_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/poscar_as_xray_structure.py to poscar_as_xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/simple_map_coefficients.py to simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb.b_factor_stats.py to pdb.b_factor_stats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/pdb_get_citation.py to pdb_get_citation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/effective_resolution.py to effective_resolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/command_line/export_scalepack_unmerged.py to export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_reader.py to sdb_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/tst_cns.py to tst_cns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/space_group_symbols.py to space_group_symbols.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/pdb_remarks.py to pdb_remarks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_utils.py to crystal_symmetry_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/index_fobs_sigma_reader.py to index_fobs_sigma_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py to crystal_symmetry_from_sdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/reflection_reader.py to reflection_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cns/sdb_writer.py to sdb_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phases.py to phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/tst_strudat.py to tst_strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/kriber/strudat.py to strudat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/table_one.py to table_one.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_examples.py to tst_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py to tst_hierarchy_long_resname_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_miller_sort_asu.py to tst_miller_sort_asu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_generate_n_char_string.py to tst_generate_n_char_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager.py to tst_map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_xray_scale.py to tst_xray_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py to tst_map_model_manager_external_sharpening_7.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_plots.py to tst_data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py to tst_hierarchy_long_chain_ids_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py to tst_selected_hierarchy_flip.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_atom_selections_10k.py to tst_atom_selections_10k.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py to tst_hierarchy_long_resname_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager.py to tst_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_manager_wrapping.py to tst_map_manager_wrapping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_all_chain_ids.py to tst_all_chain_ids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_box_around_molecule.py to tst_box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_merging_statistics.py to tst_merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_symmetry.py to tst_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_bioinformatics.py to tst_bioinformatics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py to tst_hierarchy_long_resname_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py to tst_hierarchy_forward_compatible_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py to tst_map_model_manager_model_sharpening_5.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_segids.py to tst_mmcif_segids.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_show_systematic_absences.py to tst_show_systematic_absences.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py to tst_hierarchy_long_resname_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reindex.py to tst_reindex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_group_rounding.py to tst_group_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_patterson.py to tst_patterson.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py to tst_map_model_manager_half_map_sharpening_6.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_fasta.py to tst_pdb_as_fasta.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_link_records.py to tst_pdb_link_records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_models.py to tst_split_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_statistics.py to tst_reflection_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py to tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_poscar.py to tst_poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_csv_utils.py to tst_csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_4.py to tst_map_model_manager_4.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py to tst_pdb_cif_inputs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_tools.py to tst_map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py to tst_cif_as_pdb_1atom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_extract_xtal_data.py to tst_extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_3.py to tst_map_model_manager_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_data_manager.py to tst_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py to tst_hierarchy_copy_select.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py to tst_crystal_symmetry_from_any.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_fetch.py to tst_fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_split_data_cif.py to tst_split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_lattice_symmetry.py to tst_lattice_symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py to tst_pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mtz_as_cif.py to tst_mtz_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py to tst_hierarchy_pdb_v3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_pdb_as_cif.py to tst_pdb_as_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py to tst_mmcif_to_from_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_restraints_merge.py to tst_restraints_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_2.py to tst_map_model_manager_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_utils.py to tst_reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py to tst_hierarchy_occupancies_rounding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_add_conformations.py to tst_add_conformations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py to tst_map_model_manager_tls_from_map_8.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py to tst_map_model_manager_call_consistency.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phases.py to tst_phases.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_file_reader.py to tst_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_phil.py to tst_phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py to tst_ncs_search_broken_chain.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py to tst_mmcif_biomt_reduction_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_input.py to tst_ncs_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py to tst_mtrix_biomt_cmdl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs.py to tst_ncs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py to tst_ncs_search_ligs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py to tst_ncs_reordered_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py to tst_ncs_user_selections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py to tst_ncs_groups_preprocessing.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py:409: SyntaxWarning: invalid escape sequence '\P' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py to tst_ncs_without_validation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_mmcif_multimodel.py to tst_mmcif_multimodel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py to tst_export_scalepack_unmerged.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_hierarchy_id_str.py to tst_hierarchy_id_str.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_parser.py to tst_simple_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_editor.py to tst_reflection_file_editor.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_reflection_file_reader.py to tst_reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_wildcard.py to tst_wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_simple_map_coefficients.py to tst_simple_map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_sort_atoms.py to tst_sort_atoms.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cli_parser.py to tst_cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/regression/tst_cif_1.py to tst_cif_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_symmetry_copies.py to pdb_symmetry_copies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_free_flipper.py to mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_to_map_simple.py to pdb_to_map_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/prepare_model_for_rsr.py to prepare_model_for_rsr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/direct_methods_light.py to direct_methods_light.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py to shelx_latt_sym_to_space_group_symbol.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py to pdbx_mmcif_tutorial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/libtbx_phil_examples.py to libtbx_phil_examples.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_split_chains.py to pdb_split_chains.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py to pdb_tardy_conf_sampling_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/tst_mtz_free_flipper.py to tst_mtz_free_flipper.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py to recalculate_phenix_refine_r_factors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_shake.py to pdb_shake.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/mtz_convert_free_to_work.py to mtz_convert_free_to_work.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/examples/pdb_hierarchy.py to pdb_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py to crystal_symmetry_from_ccp4_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ccp4_map/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/tst_xplormap.py to tst_xplormap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py to crystal_symmetry_from_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xplor/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/read_pcr.py to read_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/fullprof/write_pcr.py to write_pcr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/cif_conversions.py to cif_conversions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/reflections.py to reflections.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/import_data_and_flags.py to import_data_and_flags.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/gui_tools/models.py to models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/lexer.py to lexer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/write_ins.py to write_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_writer.py to tst_writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tokens.py to tokens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fcf.py to fcf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/parsers.py to parsers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/hklf.py to hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_hklf.py to tst_hklf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_fvar_encoding.py to tst_fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/tst_lex_parse_build.py to tst_lex_parse_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py to crystal_symmetry_from_ins.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/fvar_encoding.py to fvar_encoding.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/shelx/writer.py to writer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_inp.py to xds_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/blank_cbf.py to blank_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xds_cbf.py to xds_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/xparm.py to xparm.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/read_ascii.py to read_ascii.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/correction.py to correction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/spot_xds.py to spot_xds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/integrate_hkl.py to integrate_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/gain_cbf.py to gain_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/xds/geometry.py to geometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/wildcard.py to wildcard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/csv_utils.py to csv_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_tools.py to map_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/symmetry.py to symmetry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/builders_depending_on_smtbx.py to builders_depending_on_smtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dsn6/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cif_mtz_data_labels.py to cif_mtz_data_labels.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_plots.py to data_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_merge.py to tst_merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/no_merge_original_index.py to no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py to tst_no_merge_original_index.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py to crystal_symmetry_from_hkl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/merge.py to merge.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/scalepack/space_group_dictionary.py to space_group_dictionary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/mtrix_biomt.py to mtrix_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/logfiles.py to logfiles.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:19: SyntaxWarning: invalid escape sequence '\%' /usr/lib/python3.12/dist-packages/iotbx/logfiles.py:474: SyntaxWarning: invalid escape sequence '\d' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/PrettyPrint/tables.py to tables.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py to dtrek_symmetry_dict.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/reflnlist_reader.py to reflnlist_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py to crystal_symmetry_from_ref.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_reader.py to reflection_file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/file_reader.py to file_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_manager.py to map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_raxis2.py to test_raxis2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_debug_write.py to tst_debug_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis_nonsquare.py to raxis_nonsquare.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/marIP.py to marIP.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cbf.py to cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/generic_detector.py to generic_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/macscience.py to macscience.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/noir.py to noir.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/test_mar.py to test_mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/active_area_filter.py to active_area_filter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/util/filters.py to filters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/cspad_detector_formats.py to cspad_detector_formats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/beam_center_convention.py to beam_center_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/hamamatsu.py to hamamatsu.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/dtrek.py to dtrek.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger.py to eiger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/npy.py to npy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_minicbf.py to adsc_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/bruker.py to bruker.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_detectors.py to tst_detectors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxisbase.py to raxisbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_py_cbf.py to tst_py_cbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/image_from_http_request.py to image_from_http_request.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc_module.py to adsc_module.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py to tst_cbf_comp_read_meth.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/detectorbase.py to detectorbase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/saturn.py to saturn.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_minicbf.py to pilatus_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/adsc.py to adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/tst_adsc.py to tst_adsc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/url_support.py to url_support.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/mar.py to mar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/eiger_minicbf.py to eiger_minicbf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/camera_convention.py to camera_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/config_detector.py to config_detector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py to endstation_max_iv_trial.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/endstation.py to endstation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/context/spot_xy_convention.py to spot_xy_convention.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/pilatus_slice.py to pilatus_slice.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/raxis.py to raxis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/detectors/edf.py to edf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/map_model_manager.py to map_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/poscar.py to poscar.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/extract_xtal_data.py to extract_xtal_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/ncs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/split_data_cif.py to split_data_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/unique_with_biomt.py to unique_with_biomt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/programs/box_around_molecule.py to box_around_molecule.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/real_map.py to real_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/sequence.py to sequence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/ncs_spec.py to ncs_spec.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/map_coefficients.py to map_coefficients.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/common.py to common.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/miller_array.py to miller_array.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/model.py to model.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/data_manager/restraint.py to restraint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif.py to tst_mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/records.py to records.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/experiment_type.py to experiment_type.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rna_dna_detection.py to rna_dna_detection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_pdb.py to tst_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py to tst_hierarchy_flip_symmetric_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py to tst_hierarchy_atom_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py to tst_atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/remediator.py to remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remediation/tst_remediator.py to tst_remediator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection.py to tst_atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_3_interpretation.py to remark_3_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hierarchy.py to hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/nucleic_acid_codes.py to nucleic_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_atom_selection_string.py to tst_atom_selection_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/hybrid_36.py to hybrid_36.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_290_interpretation.py to remark_290_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_aa_names.py to modified_aa_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/modified_rna_dna_names.py to modified_rna_dna_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/aa_utils.py to aa_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py to tst_rna_dna_atom_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py to tst_mmcif_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdbe.py to pdbe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py to pdb_v3_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/amino_acid_codes.py to amino_acid_codes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/mmcif.py to mmcif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/remark_2_interpretation.py to remark_2_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure_2.py to tst_secondary_structure_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py to tst_read_mtrix_records_from_cif.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/secondary_structure.py to secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_name_interpretation.py to atom_name_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/rcsb.py to rcsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy.py to tst_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_secondary_structure.py to tst_secondary_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/misc_records_output.py to misc_records_output.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py to tst_mmcif_hierarchy_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py to crystal_symmetry_from_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/download.py to download.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/xray_structure.py to xray_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py to tst_hierarchy_flip_symmetric.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py to tst_extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/tst_tls.py to tst_tls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/cryst1_interpretation.py to cryst1_interpretation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py to extract_rfactors_resolutions_sigma.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py to utils.cpython-312.pyc /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:7: SyntaxWarning: invalid escape sequence '\{' /usr/lib/python3.12/dist-packages/iotbx/pdb/utils.py:45: SyntaxWarning: invalid escape sequence '\/' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/atom_selection.py to atom_selection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/web_service_api.py to web_service_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py to forward_compatible_pdb_cif_conversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/pdb/fetch.py to fetch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/alignment_as_hsearch.py to alignment_as_hsearch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/local_blast.py to local_blast.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py to ncbi_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/ebi_wu_blast_xml.py to ebi_wu_blast_xml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/homologues.py to homologues.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/xmlbuild.py to xmlbuild.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/structure.py to structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/bioinformatics/pdb_info.py to pdb_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/reflection_file_utils.py to reflection_file_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/merging_statistics.py to merging_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/fpfm_reader.py to fpfm_reader.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py to crystal_symmetry_from_inp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/iotbx/cli_parser.py to cli_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/copy_files.py to copy_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/ccp4io_adaptbx/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/benchmark_refinement.py to benchmark_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/masks.py to masks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/absolute_structure.py to absolute_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/anom_refine.py to anom_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/command_line/refine.py to refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_anomrefine.py to tst_commandline_anomrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/test_data/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/regression/tst_commandline_refine.py to tst_commandline_refine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/fpfdp.py to fpfdp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/occupancy.py to occupancy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_occupancies.py to test_occupancies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py to tst_constrained_structure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_disorder.py to test_disorder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py to tst_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py to tst_reparametrisation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_direction.py to test_direction.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_same_group.py to test_same_group.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/tests/test_rigid.py to test_rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/all.py to all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py to hydrogens.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/adp.py to adp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/site.py to site.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/constraints/rigid.py to rigid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/weighting_schemes.py to weighting_schemes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/adp_restraints.py to adp_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py to origin_fixing_restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/refinement/least_squares.py to least_squares.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/absolute_structure/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/charge_flipping.py to charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py to tst_ab_initio_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py to tst_charge_flipping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/conftest.py to conftest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/direct/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/structure_factors/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/development.py to development.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/masks/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/smtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/log.py to log.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cpp_function_name.py to cpp_function_name.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_state.py to tst_easy_mp_state.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_math_utils.py to tst_math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_fully_buffered_timeout.py to tst_fully_buffered_timeout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_python_code_parsing.py to tst_python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/forward_compatibility.py to forward_compatibility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/dlite.py to dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/sge_utils.py to sge_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/communication.py to communication.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/transfer.py to transfer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/submission.py to submission.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py to polling.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/polling.py:282: SyntaxWarning: invalid escape sequence '\?' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/errors.py to errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/util.py to util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/processing/status.py to status.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/pbs_utils.py to pbs_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py to scheduling_helpers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/generic.py to generic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/lsf.py to lsf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/scheduling.py to scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/looping.py to looping.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/queuing_system_utils/remote.py to remote.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/configure.py to configure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_run.py to easy_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/simplexml.py to simplexml.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/mpi4py.py to mpi4py.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/find_reference_cycles.py to find_reference_cycles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp_multicore.py to tst_easy_mp_multicore.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/version.py to version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subprocess_with_fixes.py to subprocess_with_fixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/objgraph.py to objgraph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_program_template.py to tst_program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/wait_for_file.py to wait_for_file.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sphinx_build.py to sphinx_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_all_on_path.py to show_all_on_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install.py to install.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/seconds_since_the_epoch.py to seconds_since_the_epoch.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_include_paths.py to show_include_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports_crude.py to find_unused_imports_crude.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numeric_version.py to show_numeric_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_reserved_names.py to find_reserved_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_tests_parallel.py to run_tests_parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/nequal.py to nequal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/printenv.py to printenv.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_unused_imports.py to find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/git_avoid_merges.py to git_avoid_merges.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remote_processing.py to remote_processing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clean_clutter.py to clean_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_clutter.py to find_clutter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_not_show_diff.py to assert_not_show_diff.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_but_no_repr.py to show_but_no_repr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/analyse_code_comments.py to analyse_code_comments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin.py to assert_stdin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_sys_executable.py to show_python_sys_executable.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_bin_path.py to show_bin_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py to assert_stdin_contains_strings.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_binary_bundle.py to start_binary_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/add_from_future_import_division.py to add_from_future_import_division.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_tests.py to show_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/remove_tree.py to remove_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_dist_paths.py to show_dist_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_commands.py to show_commands.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_variable_names.py to show_variable_names.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_selfx.py to create_selfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_line_count.py to assert_line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_host_and_user.py to show_host_and_user.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/env_run.py to env_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/extract_code_from_txt.py to extract_code_from_txt.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_environ_usage.py to show_environ_usage.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_install_script_bat.py to create_install_script_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_full_command_path.py to show_full_command_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_lib_path.py to show_lib_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_files.py to find_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/parallel_simple.py to parallel_simple.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/assert_stdin_ends_with.py to assert_stdin_ends_with.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/help.py to help.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_dist.py to make_dist.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/raise_exception_for_testing.py to raise_exception_for_testing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/prime_factors_of.py to prime_factors_of.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_modules.py to list_modules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/check_libcpp.py to check_libcpp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_qstat_counts.py to sge_qstat_counts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py to list_source_files_sorted_by_size.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_number_of_processors.py to show_number_of_processors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/epydoc_run.py to epydoc_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_date_and_time.py to show_date_and_time.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/any2unix.py to any2unix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_in_repositories.py to find_in_repositories.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/py_compile_all.py to py_compile_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/start_process.py to start_process.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/list_files.py to list_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/ipython_shell_start.py to ipython_shell_start.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_numpy_version.py to show_numpy_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_old_style_classes.py to find_old_style_classes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/path_utility.py to path_utility.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_repository_paths.py to show_repository_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_ext.py to import_all_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/line_count.py to line_count.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_options.py to show_build_options.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/sge_available_slots.py to sge_available_slots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_env.py to show_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_under_build.py to find_under_build.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/chunk.py to chunk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_build_path.py to show_build_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bundle_as_exe.py to bundle_as_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/find_untested.py to find_untested.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/scons.py to scons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/import_all_python.py to import_all_python.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/easy_qsub.py to easy_qsub.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_python_dependencies.py to show_python_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/run_pickled_function.py to run_pickled_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_module_dependencies.py to show_module_dependencies.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/make_sphinx_html.py to make_sphinx_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/create_unzipsfx.py to create_unzipsfx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/show_pythonpath.py to show_pythonpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/dtrace.py to dtrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/command_line/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/path.py to path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/progress.py to progress.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/containers.py to containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_object_oriented_patterns.py to tst_object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/complex_math.py to complex_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/topological_sort.py to topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/console_utils.py to console_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_utils.py to xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/wingide.py to wingide.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_containers.py to tst_containers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/subversion.py to subversion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/gui_objects.py to gui_objects.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/parser.py to parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_tokenizer.py to tst_tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/interface.py to interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/experimental.py to experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_interface.py to tst_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tokenizer.py to tokenizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/phil/tst_experimental.py to tst_experimental.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/try_hello_world_c.py to try_hello_world_c.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/crossmingw.py to crossmingw.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/table_utils.py to table_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_profile.py to easy_profile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_thread_utils.py to tst_thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_pickle.py to tst_easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/math_utils.py to math_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/runtime_utils.py to runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_version.py to tst_version.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_binary_search.py to tst_binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cluster.py to cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileSocket.py to FileSocket.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileClient.py to FileClient.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/StartServer.py to StartServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/FileServer.py to FileServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/server/SocketServer.py to SocketServer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/rpath.py to rpath.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_exe.py to create_windows_exe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_windows_installer.py to create_windows_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_app.py to create_mac_app.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py to install_base_packages.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/install_base_packages.py:840: SyntaxWarning: invalid escape sequence '\$' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/make_bundle.py to make_bundle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_conda.py to install_conda.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/plus_installer.py to plus_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_mac_pkg.py to create_mac_pkg.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_installer.py to create_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/install_distribution.py to install_distribution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/regenerate_module_files.py to regenerate_module_files.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py to write_gui_dispatcher_include.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/installer_utils.py to installer_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/setup_installer.py to setup_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py to create_cctbx_bundle_for_installer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/package_defs.py to package_defs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py to bootstrap.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:455: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/libtbx/auto_build/bootstrap.py:457: SyntaxWarning: invalid escape sequence '\s' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/callbacks.py to callbacks.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/xmlrpc_server_example.py to xmlrpc_server_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mp_handler.py to mp_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/stacktrace.py to stacktrace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/cluster_handler.py to cluster_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/philgen.py to philgen.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/mainthread.py to mainthread.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/file_queue.py to file_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/thread_handler.py to thread_handler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/shared_resource.py to shared_resource.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/parallel_for.py to parallel_for.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/job_scheduler.py to job_scheduler.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/socket_queue.py to socket_queue.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/scheduling/process_pool.py to process_pool.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_representation.py to tst_representation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/object_oriented_patterns.py to object_oriented_patterns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pkg_utils.py to pkg_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_easy_mp.py to tst_easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyframe.py to pyframe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clusterTests.py to clusterTests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_dlite.py to tst_dlite.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/pyplot.py to pyplot.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/env_config.py to env_config.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/assert_utils.py to assert_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/cli.py to cli.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/thread_utils.py to thread_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/str_utils.py to str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/file_clutter.py to file_clutter.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:12: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:14: SyntaxWarning: invalid escape sequence '\w' /usr/lib/python3.12/dist-packages/libtbx/file_clutter.py:16: SyntaxWarning: invalid escape sequence '\w' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/result.py to result.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_utils/statistics_info.py to statistics_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/smart_open.py to smart_open.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_find_unused_imports.py to tst_find_unused_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_mp.py to easy_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/code_analysis.py to code_analysis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/easy_pickle.py to easy_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/option_parser.py to option_parser.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_topological_sort.py to tst_topological_sort.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_runtime_sources.py to copy_runtime_sources.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_bat.py to install_bat.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_build_libtbx.py to copy_build_libtbx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/install_csh.py to install_csh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/copy_all.py to copy_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/bundle/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py to fastentrypoints.cpython-312.pyc /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:43: SyntaxWarning: invalid escape sequence '\.' /usr/lib/python3.12/dist-packages/libtbx/fastentrypoints.py:92: SyntaxWarning: invalid escape sequence '\.' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_path.py to tst_path.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/introspection.py to introspection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_xmlrpc_utils.py to tst_xmlrpc_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/load_env.py to load_env.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/clear_paths.py to clear_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/citations.py to citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_runtime_utils.py to tst_runtime_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/except_Exception.py to except_Exception.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/xcode_build_phase.py to xcode_build_phase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/development/timers.py to timers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/metric_prefixes.py to metric_prefixes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/start_print_trace.py to start_print_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_str_utils.py to tst_str_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/pubmed.py to pubmed.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/python_string.py to python_string.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/sphinx/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_scheduling.py to tst_scheduling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/tst_citations.py to tst_citations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/parallel.py to parallel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/test_utils/pytest.py to pytest.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/python_code_parsing.py to python_code_parsing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/program_template.py to program_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/libtbx/binary_search.py to binary_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/kokkos/tst_kokkos_lib.py to tst_kokkos_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_exafel_api.py to tst_exafel_api.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py to tst_gpu_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/gpu/tst_shoeboxes.py to tst_shoeboxes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/pixel/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/predictions.py to predictions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py to FormatHDF5AttributeGeometry.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/modeling/forward_models.py to forward_models.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_input.py to nanoBragg_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py to tst_nanoBragg_pilatus.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py to anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_multisource_background.py to tst_multisource_background.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/sim_data.py to sim_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py to tst_nanoBragg_minimal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py to nanoBragg_beam.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py to tst_gaussian_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py to tst_nanoBragg_mosaic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py to nanoBragg_gui_init.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py to tst_gaussian_mosaicity2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py to nanoBragg_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py to tst_nanoBragg_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py to tst_nanoBragg_multipanel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py to tst_nanoBragg_cbf_write.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py to tst_anisotropic_mosaicity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py to nanoBragg_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py to tst_gauss_argchk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py to nanoBragg_gui_frames.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py to nanoBragg_crystal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/attr_list.py to attr_list.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/stage_two_utils.py to stage_two_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/device.py to device.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/parameter_errors.py to parameter_errors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/prep_stage2_input.py to prep_stage2_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py to ensemble_refine_launcher.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py to stage_two_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/base_refiner.py to base_refiner.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py to manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py to tetragonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py to monoclinic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py to hexagonal.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py to orthorhombic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/refiners/parameters.py to parameters.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/phil.py to phil.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/mpi_logger.py to mpi_logger.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/psf.py to psf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_utils.py to hopper_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_io.py to hopper_io.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py to hopper_ensemble_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/intrinsics.py to intrinsics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/fem_include_search_paths.py to fem_include_search_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/show_calls.py to show_calls.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py to insert_write_at_start_of_each_procedure.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/split.py to split.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/command_line/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/simple_compilation.py to simple_compilation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_read.py to tst_read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_equivalence.py to tst_equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/equivalence.py to equivalence.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/cout.py to cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout_compile.py to tst_cout_compile.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tokenization.py to tokenization.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/tst_cout.py to tst_cout.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/fable/read.py to read.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py to extract_script_from_html_cctbx_doc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_11_script_1.py to tst_11_script_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py to tst_17_script_rfactors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py to tst_10_doc_programming_tips_1.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py to tst_2_doc_hlo_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py to tst_18_doc_programming_tips_2.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_1_template.py to tst_1_template.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py to tst_6_doc_hlo_model_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/exercise.py to exercise.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py to tst_19_doc_programming_tips_3.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py to tst_3_doc_hlo_model_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py to tst_16_script_lbfgs_with_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py to tst_7_doc_low_flex_advanced.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py to tst_4_doc_hlo_data_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py to tst_9_doc_maps_boxing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py to tst_13_script_ideal_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py to tst_5_doc_hlo_map_manager.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py to tst_8_doc_maps_intro.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py to tst_12_script_compare_ss.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py to tst_14_script_lbfgs_no_curvature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_py_from_html.py to tst_py_from_html.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py to tst_15_doc_models_hierarchy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cctbx_website/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/source_generators/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py to self_match.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py to sample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/run.py to run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/view_fineslices.py to view_fineslices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_path_indexing_ambiguity.py to change_path_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plotstats.py to plotstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/ray_trace.py to ray_trace.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/change_basis.py to change_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/frame_extractor_by_scan.py to frame_extractor_by_scan.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_scale.py to mpi_scale.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/viewstats.py to viewstats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/comparestats.py to comparestats.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/iotacc.py to iotacc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/plot_energy_spectrum.py to plot_energy_spectrum.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/mpi_run.py to mpi_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/spot_param_visualizer.py to spot_param_visualizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/r_mtz_mtz.py to r_mtz_mtz.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/cluster_isoform.py to cluster_isoform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/explore_twin_operators.py to explore_twin_operators.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/compare_solution_pickles.py to compare_solution_pickles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/solve_indexing_ambiguity.py to solve_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/prime_gui.py to prime_gui.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/command_line/print_integration_pickle.py to print_integration_pickle.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/isoform_cluster/mod_isoform_cluster.py to mod_isoform_cluster.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_leastsqr.py to mod_leastsqr.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_util.py to mod_util.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs_partiality.py to mod_lbfgs_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_perf.py to mod_perf.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_plotter.py to mod_plotter.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_merge_data.py to mod_merge_data.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_partiality.py to mod_partiality.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_outlier.py to mod_outlier.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py to mod_gui_frames.cpython-312.pyc /usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_frames.py:750: SyntaxWarning: invalid escape sequence '\A' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_mx.py to mod_mx.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_threads.py to mod_threads.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_misc.py to mod_misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_gui_dialogs.py to mod_gui_dialogs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_run.py to mod_run.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/postrefine.py to postrefine.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_input.py to mod_input.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_pdb.py to mod_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/postrefine/mod_results.py to mod_results.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_indexing_ambiguity.py to mod_indexing_ambiguity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_kmeans.py to mod_kmeans.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/prime/index_ambiguity/mod_lbfgs.py to mod_lbfgs.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/cma_es_interface.py to cma_es_interface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/cma_es/tst_cma_es.py to tst_cma_es.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/run_tests.py to run_tests.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/smoothing.py to smoothing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_reductions.py to generate_reductions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py to generate_std_imports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py to operator_functor_info.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_apply.py to generate_apply.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_all.py to generate_all.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py to generate_operator_traits_builtin.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py to generate_operator_functors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/array_family/generate_algebras.py to generate_algebras.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/lbfgs_fem.py to lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/source_generators/flex_fwd_h.py to flex_fwd_h.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stdlib/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/flex.py to flex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/array_family/shared.py to shared.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/robust_statistics.py to robust_statistics.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_random_transform.py to tst_random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_utils.py to random_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_robust.py to tst_robust.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/misc.py to misc.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/signal_utils.py to signal_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/graph_tools.py to graph_tools.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/tst_graph.py to tst_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/random_transform.py to random_transform.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/command_line.py to command_line.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/python_utils/dicts.py to dicts.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/restraints.py to restraints.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cubicle_neighbors.py to cubicle_neighbors.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/tst_iso_surface.py to tst_iso_surface.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/iso_surface/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minimizers.py to minimizers.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graphics_utils/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/immoptibox_ports.py to immoptibox_ports.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_array_loops.py to flex_array_loops.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/rigid_body_refinement_core.py to rigid_body_refinement_core.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/flex_grid.py to flex_grid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bevington/silver.py to silver.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py to lbfgs_linear_least_squares_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/lbfgs_recipe.py to lbfgs_recipe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/minimizer_comparisons.py to minimizer_comparisons.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/principal_axes_of_inertia.py to principal_axes_of_inertia.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/functions.py to functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py to integrating_a_weighted_sinc_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/chebyshev_lsq_example.py to chebyshev_lsq_example.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/examples/bootstrap.py to bootstrap.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/sparse/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/genetic_algorithm_with_mp.py to genetic_algorithm_with_mp.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/svd.py to svd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/householder.py to householder.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/linalg/eigensystem.py to eigensystem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py to tst_tardy_tree_find_paths.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tardy_tree.py to tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_rigidity.py to tst_rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/test_cases_tardy_pdb.py to test_cases_tardy_pdb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py to rigidity_matrix_symbolic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_utils.py to tst_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/tst_tardy_tree.py to tst_tardy_tree.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/graph/rigidity.py to rigidity.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/curve_fitting.py to curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/periodogram.py to periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/lefebvre.py to lefebvre.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/ext.py to ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike_mom.py to tst_zernike_mom.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/euler_angles.py to euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gumbel.py to gumbel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900.py to fliege_mayer_900.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sphere_sphere_intersection.py to sphere_sphere_intersection.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/scale_curves.py to scale_curves.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/farey.py to farey.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/clustering.py to clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/zernike_align_fft.py to zernike_align_fft.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_multivariate_moments.py to tst_multivariate_moments.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_peak.py to fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/chebyshev_lsq_fit.py to chebyshev_lsq_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/cubic_spline.py to cubic_spline.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_bessel_zeros.py to tst_bessel_zeros.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/besselk.py to besselk.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/so3_lie_algebra.py to so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/superpose.py to superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_so3_lie_algebra.py to tst_so3_lie_algebra.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_240_21.py to des_3_240_21.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/distributions.py to distributions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_undirected_graph.py to tst_undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/undirected_graph.py to undirected_graph.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fit_quadratic_function.py to fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py to tst_fit_quadratic_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gcd.py to tst_gcd.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_clustering.py to tst_clustering.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_cubic_equation.py to tst_cubic_equation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_dmatrix.py to tst_dmatrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py to tst_uniform_rotation_matrix.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_resample.py to tst_resample.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian.py to tst_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_exp_functions.py to tst_exp_functions.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_line_search.py to tst_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_similarity_indices.py to tst_similarity_indices.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_angle_derivative.py to tst_angle_derivative.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_r3_rotation.py to tst_r3_rotation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_superpose.py to tst_superpose.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py to tst_minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_bessel.py to tst_bessel.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_periodogram.py to tst_periodogram.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_g_function.py to tst_g_function.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_math.py to tst_math.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_halton.py to tst_halton.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py to tst_orthonormal_basis.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_curve_fitting.py to tst_curve_fitting.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py to tst_gaussian_fit_1d_analytical.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_weighted_correlation.py to tst_weighted_correlation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py to tst_error_propagation_matrix_inverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_quadrature.py to tst_quadrature.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_euler_angles.py to tst_euler_angles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_tetrahedron.py to tst_tetrahedron.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tests/tst_fit_peak.py to tst_fit_peak.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/spe.py to spe.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_400.py to fliege_mayer_400.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/des_3_100_13.py to des_3_100_13.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py to fliege_mayer_900_ylm.cpython-312.pyc /usr/lib/python3.12/dist-packages/scitbx/math/fliege_mayer_900_ylm.py:1: SyntaxWarning: invalid escape sequence '\i' byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/minimum_covering_ellipsoid.py to minimum_covering_ellipsoid.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/multiple_superposition.py to multiple_superposition.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/breakpoint.py to breakpoint.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian_fit.py to gaussian_fit.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/gaussian.py to gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/incremental_SO3_sampling.py to incremental_SO3_sampling.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_zernike.py to tst_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/tst_2d_zernike.py to tst_2d_zernike.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/sieve_of_eratosthenes.py to sieve_of_eratosthenes.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/math/boost_python/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py to tst_normal_equations.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/tests/test_problems.py to test_problems.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns_solving.py to normal_eqns_solving.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lstbx/normal_eqns.py to normal_eqns.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/random/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/reparams.py to reparams.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/auxiliary.py to auxiliary.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/compulsory.py to compulsory.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py to realsymmetricpseudoinverse.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/refinebase.py to refinebase.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/bounds.py to bounds.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/optional.py to optional.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/min_logging.py to min_logging.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/twisted_gaussian.py to twisted_gaussian.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/dtmin/minimizer.py to minimizer.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_ext.py to tst_ext.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py to tst_lbfgs_fem.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_curvatures.py to tst_curvatures.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py to tst_func_free_line_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py to tst_mpi_split_evaluator.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/glmtbx/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/direct_search_simulated_annealing.py to direct_search_simulated_annealing.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/map.py to map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_map.py to tst_map.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/vector.py to vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/set.py to set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_set.py to tst_set.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/stl/tst_vector.py to tst_vector.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/r3_utils.py to r3_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/fftpack.py to fftpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/golden_section_search.py to golden_section_search.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/minpack.py to minpack.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/lbfgsb.py to lbfgsb.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/simplex.py to simplex.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/regular_grid_on_unit_sphere.py to regular_grid_on_unit_sphere.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/tst_wigner3j.py to tst_wigner3j.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/wigner/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/matrix/row_echelon.py to row_echelon.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py to wx_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py to tst_joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_molecules.py to wx_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_singular.py to tst_singular.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py to free_motion_reference_impl.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_utils.py to test_utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py to tst_spherical_refinement.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py to tst_featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py to tst_free_motion_hard.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/test_simulation.py to test_simulation.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py to wx_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_molecules.py to tst_molecules.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py to tst_free_motion.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/proto/utils.py to utils.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/tst.py to tst.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_tardy.py to tst_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/spatial_lib.py to spatial_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/body_lib.py to body_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_basic.py to tst_basic.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/wx_tardy.py to wx_tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py to tst_energy_plots.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/make_bundles.py to make_bundles.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/featherstone.py to featherstone.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/joint_lib.py to joint_lib.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/rigid_body/essence/tardy.py to tardy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/__init__.py to __init__.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/suffixtree/single.py to single.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/libtbx_refresh.py to libtbx_refresh.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/cross_entropy.py to cross_entropy.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/differential_evolution.py to differential_evolution.cpython-312.pyc byte-compiling /<>/debian/tmp/usr/lib/python3.12/dist-packages/scitbx/boost_python/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info writing src/dxtbx.egg-info/PKG-INFO writing dependency_links to src/dxtbx.egg-info/dependency_links.txt writing entry points to src/dxtbx.egg-info/entry_points.txt writing top-level names to src/dxtbx.egg-info/top_level.txt reading manifest file 'src/dxtbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' adding license file 'AUTHORS' writing manifest file 'src/dxtbx.egg-info/SOURCES.txt' Copying src/dxtbx.egg-info to /<>/debian/tmp/usr/lib/python3.12/dist-packages/dxtbx-3.17.0.egg-info Skipping SOURCES.txt running install_scripts Installing cxi.image2pickle script to /<>/debian/tmp/usr/bin Installing cxi.image_average script to /<>/debian/tmp/usr/bin Installing dev.dxtbx.debug_memory script to /<>/debian/tmp/usr/bin Installing dev.dxtbx.read_sequence script to /<>/debian/tmp/usr/bin Installing dxtbx.depends_on script to /<>/debian/tmp/usr/bin Installing dxtbx.detector_superpose script to /<>/debian/tmp/usr/bin Installing dxtbx.display_parallax_correction script to /<>/debian/tmp/usr/bin Installing dxtbx.dlsnxs2cbf script to /<>/debian/tmp/usr/bin Installing dxtbx.image2pickle script to /<>/debian/tmp/usr/bin Installing dxtbx.image_average script to /<>/debian/tmp/usr/bin Installing dxtbx.install_format script to /<>/debian/tmp/usr/bin Installing dxtbx.overload script to /<>/debian/tmp/usr/bin Installing dxtbx.plot_detector_models script to /<>/debian/tmp/usr/bin Installing dxtbx.print_header script to /<>/debian/tmp/usr/bin Installing dxtbx.print_matching_images script to /<>/debian/tmp/usr/bin Installing dxtbx.radial_average script to /<>/debian/tmp/usr/bin Installing dxtbx.saturation script to /<>/debian/tmp/usr/bin Installing dxtbx.show_mask_info script to /<>/debian/tmp/usr/bin Installing dxtbx.show_matching_formats script to /<>/debian/tmp/usr/bin Installing dxtbx.show_registry script to /<>/debian/tmp/usr/bin # specific installation for the cctbx build directory dh_auto_install -- -s custom --install-args="debian/install-cctbx.sh -- --pyver={version} --srcdir=/<> --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx'" install -m0755 -d /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp pybuild --install -i python{version} -p 3.12 -s custom "--install-args=debian/install-cctbx.sh -- --pyver={version} --srcdir=/<> --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx'" --dest-dir /<>/cctbx-2023.12\+ds2\+\~3.17.0\+ds1/debian/tmp I: pybuild base:311: debian/install-cctbx.sh -- --pyver=3.12 --srcdir=/<> --builddir='/<>/.pybuild/cpython3_3.12/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' debian/install-cctbx.sh: line 7: 0: command not found --pyver '3.12' --srcdir '/<>' --builddir '/<>/.pybuild/cpython3_3.12/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' -- Intalling CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx From the source /<> build /<>/.pybuild/cpython3_3.12/build_ To the FHS : pyver 3.12 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.12 libdir /usr/lib/riscv64-linux-gnu pythondir /usr/lib/python3.12/dist-packages Copying libtbx_env from /<>/.pybuild/cpython3_3.12/build_ to /<>/debian/tmp/usr/lib/cctbx/python3.12 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/fable.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/scitbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/annlib.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cbflib.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/ccp4io.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cctbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/crys3d.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/iotbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/gltbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/mmtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/rstbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/serialtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.wait_for_file"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/wait_for_file.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/sphinx.build"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/sphinx_build.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_all_on_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_all_on_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.install"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/install.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.seconds_since_the_epoch"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/seconds_since_the_epoch.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_include_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_include_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.find_unused_imports_crude"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/find_unused_imports_crude.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_numeric_version"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_numeric_version.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.find_reserved_names"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/find_reserved_names.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.run_tests_parallel"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/run_tests_parallel.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.refresh"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/refresh.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.create_windows_exe"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/create_windows_exe.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.nequal"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/nequal.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.printenv"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/printenv.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.find_unused_imports"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/find_unused_imports.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.git_avoid_merges"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/git_avoid_merges.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.remote_processing"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/remote_processing.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.tcsh"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/tcsh.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.latex"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/latex.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.clean_clutter"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/clean_clutter.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.find_clutter"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/find_clutter.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.assert_not_show_diff"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/assert_not_show_diff.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_but_no_repr"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_but_no_repr.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.analyse_code_comments"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/analyse_code_comments.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.create_mac_app"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/create_mac_app.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.exec"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/exec.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.assert_stdin"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/assert_stdin.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_python_sys_executable"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_python_sys_executable.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.gdb"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/gdb.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.valgrind"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/valgrind.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_bin_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_bin_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.assert_stdin_contains_strings"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/assert_stdin_contains_strings.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.assert_stdin_does_not_contain_strings"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/assert_stdin_contains_strings.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.start_binary_bundle"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/start_binary_bundle.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.add_from_future_import_division"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/add_from_future_import_division.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_tests"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_tests.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.remove_tree"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/remove_tree.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_commands"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_commands.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.pdflatex"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/pdflatex.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_variable_names"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_variable_names.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.bibtex"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/bibtex.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.create_selfx"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/create_selfx.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.configure"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/configure.sh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.assert_line_count"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/assert_line_count.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.unpack_in_sources"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/unpack_in_sources.csh"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_host_and_user"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_host_and_user.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.env_run"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/env_run.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.extract_code_from_txt"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/extract_code_from_txt.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/libtbx.show_environ_usage"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_environ_usage.py"), 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relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../wxtbx/command_line/plan_sad_experiment.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/phenix.pdb_editor"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../wxtbx/command_line/pdb_editor.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/wxtbx.show_file_info"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../wxtbx/command_line/show_file_info.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/wxtbx.anomalous_differences_histogram"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../wxtbx/command_line/anomalous_differences_histogram.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cctbx.loggraph"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../wxtbx/command_line/loggraph.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.dlsnxs2cbf"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/dlsnxs2cbf.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.print_header"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/print_header.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.install_format"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/install_format.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.show_mask_info"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/show_mask_info.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.image2pickle"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/image2pickle.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cxi.image2pickle"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/image2pickle.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.show_registry"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/show_registry.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.image_average"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/image_average.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cxi.image_average"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/image_average.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.print_matching_images"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/print_matching_images.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dev.dxtbx.read_sequence"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/read_sequence.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.detector_superpose"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/detector_superpose.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dev.dxtbx.debug_memory"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/debug_memory.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.saturation"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/saturation.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.plot_detector_models"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/plot_detector_models.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.radial_average"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/radial_average.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.display_parallax_correction"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/display_parallax_correction.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.overload"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/overload.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.show_matching_formats"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/show_matching_formats.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.depends_on"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src/dxtbx/command_line/depends_on.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/boost.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/omptbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cma_es.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/fable.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/scitbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/annlib.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cbflib.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/ccp4io.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cctbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/crys3d.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/smtbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/iotbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/gltbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/mmtbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/spotfinder.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/rstbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/serialtbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/wxtbx.python"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/boost.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/omptbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cma_es.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/fable.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/scitbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/annlib.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cbflib.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/ccp4io.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cctbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/crys3d.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/smtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/iotbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/dxtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/gltbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/mmtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/spotfinder.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/rstbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/serialtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/wxtbx.show_build_path"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/boost.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/omptbx.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin/cma_es.show_dist_paths"): relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/show_dist_paths.py")}, 'bin_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="bin"), 'boost_version': 108300, 'build_options': , 'build_path': absolute_path("/<>/debian/tmp/usr/lib/cctbx/python3.12"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="exe"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="include"), 'installed': False, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'probe', 'cbflib', 'docutils', 'reduce', 'king'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../annlib"), 'annlib_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../annlib_adaptbx"), 'boost': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../boost"), 'boost_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../cctbx"), 'chiltbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../wxtbx")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/bin/python3.12"), 'python_version_major_minor': (3, 12), 'pythonpath': [relocatable_path(anchor="/<>/.pybuild/cpython3_3.12/build_", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../.."), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="lib"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/lib/python3.12/dist-packages"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr/local/lib/python3.12/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="../../..")], 'scons_dist_path': relocatable_path(anchor="/<>/debian/tmp/usr/lib/cctbx/python3.12", relocatable="/usr")} Saved /<>/debian/tmp/usr/lib/cctbx/python3.12/libtbx_env env {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.solver"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.solver.py"), 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'python_version_major_minor': (3, 12), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 16,499,569 bytes received 568 bytes 4,714,324.86 bytes/sec total size is 16,487,768 speedup is 1.00 building file list ... done ./ libann_adaptor.so -> libann_adaptor.so.0.0.1 libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 libann_adaptor.so.0.0.1 libasymmetric_map.so -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so -> libcbf-private.so.0.0.1 libcbf-private.so.0 -> libcbf-private.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so -> libccp4io.so.0.0.1 libccp4io.so.0 -> libccp4io.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so -> libcctbx.so.0.0.1 libcctbx.so.0 -> libcctbx.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so -> libomptbx.so.0.0.1 libomptbx.so.0 -> libomptbx.so.0.0.1 libomptbx.so.0.0.1 librstbx.so -> librstbx.so.0.0.1 librstbx.so.0 -> librstbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so -> libspotfinder.so.0.0.1 libspotfinder.so.0 -> libspotfinder.so.0.0.1 libspotfinder.so.0.0.1 sent 58,303,218 bytes received 494 bytes 7,773,828.27 bytes/sec total size is 58,285,994 speedup is 1.00 building file list ... done annlib_adaptbx/ annlib_adaptbx/ann_adaptor.h sent 2,232 bytes received 38 bytes 4,540.00 bytes/sec total size is 2,068 speedup is 0.91 building file list ... done boost_adaptbx/ boost_adaptbx/boost_range_python.hpp boost_adaptbx/convertible.h boost_adaptbx/exporting.hpp boost_adaptbx/floating_point_exceptions.h boost_adaptbx/hash.h boost_adaptbx/iterator_range.h boost_adaptbx/optional_conversions.h boost_adaptbx/precompiled.h boost_adaptbx/python_streambuf.h boost_adaptbx/std_pair_conversion.h boost_adaptbx/std_pair_fwd.h boost_adaptbx/swig_arg.hpp boost_adaptbx/tuple_conversion.h boost_adaptbx/graph/ boost_adaptbx/graph/graph_export_adaptor.hpp boost_adaptbx/graph/graph_type.hpp boost_adaptbx/graph/maximum_clique_greedy.hpp boost_adaptbx/graph/maximum_clique_rascal.hpp boost_adaptbx/graph/vertex_map.hpp boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy.h sent 73,896 bytes received 386 bytes 49,521.33 bytes/sec total size is 72,301 speedup is 0.97 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/basic.h cbflib_adaptbx/detectors/buffer_based_service.h cbflib_adaptbx/detectors/cbf_adaptor.h cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h cbflib_adaptbx/detectors/mar_adaptor.h cbflib_adaptbx/detectors/boost_python/ cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h cbflib_adaptbx/detectors/boost_python/general_cbf_write.h sent 22,326 bytes received 158 bytes 44,968.00 bytes/sec total size is 21,656 speedup is 0.96 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/ccp4_ccplib_fem.hpp ccp4io_adaptbx/ccp4_diskio_fem.hpp ccp4io_adaptbx/ccp4_fftlib_fem.hpp ccp4io_adaptbx/ccp4_library_fem.hpp ccp4io_adaptbx/ccp4_maplib_fem.hpp ccp4io_adaptbx/ccp4_mtzlib_fem.hpp ccp4io_adaptbx/ccp4_other_fem.hpp ccp4io_adaptbx/ccp4_parser_f.h ccp4io_adaptbx/ccp4_parser_fem.hpp ccp4io_adaptbx/ccp4_symlib_fem.hpp ccp4io_adaptbx/cmaplib_f.h ccp4io_adaptbx/cmtzlib_f.h ccp4io_adaptbx/csymlib_f.h ccp4io_adaptbx/library_f.h ccp4io_adaptbx/printf_wrappers.h ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/fftlib.hpp sent 87,971 bytes received 326 bytes 58,864.67 bytes/sec total size is 86,683 speedup is 0.98 building file list ... done cctbx/ cctbx/adptbx.h cctbx/anharmonic.h cctbx/coordinates.h cctbx/crystal_orientation.h cctbx/cumulative_intensity_distribution.h cctbx/error.h cctbx/french_wilson.h cctbx/hendrickson_lattman.h cctbx/import_scitbx_af.h cctbx/miller.h cctbx/restraints.h cctbx/tagged_value.h cctbx/uctbx.h cctbx/adp_restraints/ cctbx/adp_restraints/adp_restraints.h cctbx/adp_restraints/adp_similarity.h cctbx/adp_restraints/aniso_restraints.h cctbx/adp_restraints/fixed_u_eq_adp.h cctbx/adp_restraints/isotropic_adp.h cctbx/adp_restraints/rigid_bond.h cctbx/adp_restraints/rigu.h cctbx/adptbx/ cctbx/adptbx/hirshfeld.h cctbx/covariance/ cctbx/covariance/covariance.h cctbx/crystal/ cctbx/crystal/asu_clusters.h cctbx/crystal/close_packing.h cctbx/crystal/coordination_sequences.h cctbx/crystal/direct_space_asu.h cctbx/crystal/incremental_pairs.h cctbx/crystal/namespace.h cctbx/crystal/neighbors_fast.h cctbx/crystal/neighbors_simple.h cctbx/crystal/pair_tables.h cctbx/crystal/site_cluster_analysis.h cctbx/crystal/symmetry.h cctbx/crystal/workarounds_bpl.h cctbx/dmtbx/ cctbx/dmtbx/triplet_generator.h cctbx/dmtbx/triplet_phase_relation.h cctbx/eltbx/ cctbx/eltbx/attenuation_coefficient.h cctbx/eltbx/basic.h cctbx/eltbx/chemical_elements.h cctbx/eltbx/covalent_radii.h cctbx/eltbx/electron_scattering.h cctbx/eltbx/fp_fdp.h cctbx/eltbx/henke.h cctbx/eltbx/icsd_radii.h cctbx/eltbx/neutron.h cctbx/eltbx/sasaki.h cctbx/eltbx/tiny_pse.h cctbx/eltbx/wavelengths.h cctbx/eltbx/xray_scattering.h cctbx/eltbx/xray_scattering/ cctbx/eltbx/xray_scattering/form_factor.h cctbx/eltbx/xray_scattering/gaussian.h cctbx/eltbx/xray_scattering/n_gaussian.h cctbx/eltbx/xray_scattering/n_gaussian_raw.h cctbx/examples/ cctbx/examples/merging/ cctbx/examples/merging/postrefine_base.h cctbx/examples/merging/xscale_prototype_core.h cctbx/geometry/ cctbx/geometry/geometry.h cctbx/geometry_restraints/ cctbx/geometry_restraints/angle.h cctbx/geometry_restraints/asu_cache.h cctbx/geometry_restraints/bond.h cctbx/geometry_restraints/bond_misc.h cctbx/geometry_restraints/bond_similarity.h cctbx/geometry_restraints/bond_sorted.h cctbx/geometry_restraints/chirality.h cctbx/geometry_restraints/dihedral.h cctbx/geometry_restraints/motif.h cctbx/geometry_restraints/namespace.h cctbx/geometry_restraints/nonbonded.h cctbx/geometry_restraints/nonbonded_sorted.h cctbx/geometry_restraints/parallelity.h cctbx/geometry_restraints/planarity.h cctbx/geometry_restraints/proxy_select.h cctbx/geometry_restraints/shared_wrapper_pickle.hpp cctbx/geometry_restraints/sorted_asu_proxies.h cctbx/geometry_restraints/utils.h cctbx/maptbx/ cctbx/maptbx/asymmetric_map.h cctbx/maptbx/average_densities.h cctbx/maptbx/connectivity.h cctbx/maptbx/coordinate_transformers.h cctbx/maptbx/copy.h cctbx/maptbx/fft.h cctbx/maptbx/fsc.h cctbx/maptbx/ft_analytical_1d_point_scatterer_at_origin.h cctbx/maptbx/grid_indices_around_sites.h cctbx/maptbx/grid_tags.h cctbx/maptbx/gridding.h cctbx/maptbx/histogram.h cctbx/maptbx/interpolation.h cctbx/maptbx/loft.h cctbx/maptbx/map_accumulator.h cctbx/maptbx/marked_grid_points.h cctbx/maptbx/mask.h cctbx/maptbx/mask_utils.h cctbx/maptbx/namespace.h cctbx/maptbx/peak_search.h cctbx/maptbx/resolution.h cctbx/maptbx/skeletons.h cctbx/maptbx/sphericity.h cctbx/maptbx/standard_deviations_around_sites.hpp cctbx/maptbx/statistics.h cctbx/maptbx/structure_factors.h cctbx/maptbx/target_and_gradients.h cctbx/maptbx/utils.h cctbx/maptbx/accessors/ cctbx/maptbx/accessors/c_grid_p1.h cctbx/maptbx/accessors/c_grid_padded_p1.h cctbx/maptbx/bcr/ cctbx/maptbx/bcr/bcr.h cctbx/masks/ cctbx/masks/around_atoms.h cctbx/masks/flood_fill.h cctbx/math/ cctbx/math/array_utils.h cctbx/math/cos_sin_table.h cctbx/math/loop_n_from_m.h cctbx/math/mod.h cctbx/miller/ cctbx/miller/amplitude_normalisation.h cctbx/miller/asu.h cctbx/miller/bins.h cctbx/miller/change_basis.h cctbx/miller/expand_to_p1.h cctbx/miller/f_calc_map.h cctbx/miller/index_generator.h cctbx/miller/index_span.h cctbx/miller/lookup_utils.h cctbx/miller/match.h cctbx/miller/match_bijvoet_mates.h cctbx/miller/match_indices.h cctbx/miller/match_multi_indices.h cctbx/miller/math.h cctbx/miller/merge_equivalents.h cctbx/miller/phase_integrator.h cctbx/miller/phase_transfer.h cctbx/miller/randomize_amplitude_and_phase.h cctbx/miller/slices.h cctbx/miller/sym_equiv.h cctbx/miller/union_of_indices.h cctbx/multipolar/ cctbx/multipolar/aspherical.h cctbx/sgtbx/ cctbx/sgtbx/basic.h cctbx/sgtbx/brick.h cctbx/sgtbx/change_of_basis_op.h cctbx/sgtbx/find_affine.h cctbx/sgtbx/group_codes.h cctbx/sgtbx/lattice_symmetry.h cctbx/sgtbx/lattice_tr.h cctbx/sgtbx/miller_ops.h cctbx/sgtbx/operator_from_axis_direction.h cctbx/sgtbx/parse_string.h cctbx/sgtbx/phase_info.h cctbx/sgtbx/reciprocal_space_asu.h cctbx/sgtbx/reciprocal_space_reference_asu.h cctbx/sgtbx/reference_settings.h cctbx/sgtbx/rot_mx.h cctbx/sgtbx/rot_mx_hash.h cctbx/sgtbx/rot_mx_info.h cctbx/sgtbx/rotation_matrices.h cctbx/sgtbx/row_echelon_solve.h cctbx/sgtbx/rt_mx.h cctbx/sgtbx/rt_mx_hash.h cctbx/sgtbx/search_symmetry.h cctbx/sgtbx/select_generators.h cctbx/sgtbx/seminvariant.h cctbx/sgtbx/site_constraints.h cctbx/sgtbx/site_symmetry.h cctbx/sgtbx/site_symmetry_table.h cctbx/sgtbx/smith_normal_form.h cctbx/sgtbx/space_group.h cctbx/sgtbx/space_group_hash.h cctbx/sgtbx/space_group_type.h cctbx/sgtbx/sym_equiv_sites.h cctbx/sgtbx/symbols.h cctbx/sgtbx/sys_abs_equiv.h cctbx/sgtbx/tensor_rank_2.h cctbx/sgtbx/tensors.h cctbx/sgtbx/tr_group.h cctbx/sgtbx/tr_group_hash.h cctbx/sgtbx/tr_vec.h cctbx/sgtbx/tr_vec_hash.h cctbx/sgtbx/utils.h cctbx/sgtbx/wyckoff.h cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h cctbx/sgtbx/direct_space_asu/proto/cut.h cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.h cctbx/sgtbx/direct_space_asu/proto/expressions.h cctbx/sgtbx/direct_space_asu/proto/facet_collection.h cctbx/sgtbx/direct_space_asu/proto/reference_table.h cctbx/sgtbx/direct_space_asu/proto/shortcuts.h cctbx/sgtbx/direct_space_asu/proto/small_vec_math.h cctbx/symmetry_search/ cctbx/symmetry_search/translation_refinement.h cctbx/translation_search/ cctbx/translation_search/fast_nv1995.h cctbx/translation_search/fast_terms.h cctbx/translation_search/namespace.h cctbx/translation_search/symmetry_flags.h cctbx/translation_search/fast_nv1995/ cctbx/translation_search/fast_nv1995/combinations.h cctbx/translation_search/fast_nv1995/intermediates.h cctbx/translation_search/fast_nv1995/summations.h cctbx/uctbx/ cctbx/uctbx/fast_minimum_reduction.h cctbx/uctbx/determine_unit_cell/ cctbx/uctbx/determine_unit_cell/NCDist.h cctbx/xray/ cctbx/xray/conversions.h cctbx/xray/curvatures_simple.h cctbx/xray/each_hkl_gradients_direct.h cctbx/xray/extinction.h cctbx/xray/f_model.h cctbx/xray/fast_gradients.h cctbx/xray/gradient_flags.h cctbx/xray/gradients_direct.h cctbx/xray/grouped_data.h cctbx/xray/hr_ht_cache.h cctbx/xray/minimization.h cctbx/xray/observations.h cctbx/xray/packing_order.h cctbx/xray/parameter_map.h cctbx/xray/sampled_model_density.h cctbx/xray/sampling_base.h cctbx/xray/sampling_loop.h cctbx/xray/scatterer.h cctbx/xray/scatterer_flags.h cctbx/xray/scatterer_utils.h cctbx/xray/scattering_type_registry.h cctbx/xray/sigmaa.h cctbx/xray/structure_factors_direct.h cctbx/xray/structure_factors_simple.h cctbx/xray/targets.h cctbx/xray/twin_component.h cctbx/xray/twin_targets.h cctbx/xray/targets/ cctbx/xray/targets/common_results.h cctbx/xray/targets/correlation.h cctbx/xray/targets/least_squares.h cctbx/xray/targets/mlf.h cctbx/xray/targets/mlhl.h cctbx/xray/targets/mli.h cctbx/xray/targets/shelxl_wght_ls.hpp sent 1,904,362 bytes received 4,420 bytes 763,512.80 bytes/sec total size is 1,887,271 speedup is 0.99 building file list ... done cma_es/ cma_es/cma/ cma_es/cma/cmaes.h cma_es/cma/cmaes_interface.h sent 6,886 bytes received 60 bytes 13,892.00 bytes/sec total size is 6,671 speedup is 0.96 building file list ... done sent 199 bytes received 12 bytes 140.67 bytes/sec total size is 0 speedup is 0.00 building file list ... done dxtbx/ dxtbx/error.h dxtbx/imageset.h dxtbx/array_family/ dxtbx/array_family/flex_table.h dxtbx/array_family/flex_table_suite.h dxtbx/array_family/ref_pickle_double_buffered.h dxtbx/boost_python/ dxtbx/boost_python/compression.h dxtbx/format/ dxtbx/format/image.h dxtbx/format/boost_python/ dxtbx/format/boost_python/cbf_read_buffer.h dxtbx/masking/ dxtbx/masking/goniometer_shadow_masking.h dxtbx/masking/masking.h dxtbx/model/ dxtbx/model/beam.h dxtbx/model/crystal.h dxtbx/model/detector.h dxtbx/model/experiment.h dxtbx/model/experiment_list.h dxtbx/model/goniometer.h dxtbx/model/kappa_goniometer.h dxtbx/model/model_helpers.h dxtbx/model/multi_axis_goniometer.h dxtbx/model/panel.h dxtbx/model/panel_data.h dxtbx/model/parallax_correction.h dxtbx/model/pixel_to_millimeter.h dxtbx/model/ray_intersection.h dxtbx/model/scan.h dxtbx/model/scan_helpers.h dxtbx/model/spectrum.h dxtbx/model/virtual_panel.h dxtbx/model/boost_python/ dxtbx/model/boost_python/pickle_suite.h dxtbx/model/boost_python/to_from_dict.h sent 379,950 bytes received 610 bytes 761,120.00 bytes/sec total size is 377,522 speedup is 0.99 building file list ... done ./ fem.hpp noexcept_false.hpp fem/ fem/arr.hpp fem/arr_and_str_indices.hpp fem/arr_ref.hpp fem/arr_size.hpp fem/close_chain.hpp fem/common.hpp fem/data.hpp fem/data_of_type.hpp fem/data_type_star.hpp fem/dimension.hpp fem/do.hpp fem/error_utils.hpp fem/file_positioning_chain.hpp fem/format.hpp fem/inquire_chain.hpp fem/intrinsics.hpp fem/intrinsics_extra.hpp fem/io.hpp fem/io_exceptions.hpp fem/main.hpp fem/major_types.hpp fem/open_chain.hpp fem/read.hpp fem/size_t.hpp fem/star.hpp fem/stop.hpp fem/str.hpp fem/str_arr_ref.hpp fem/str_ref.hpp fem/variant.hpp fem/write.hpp fem/zero.hpp fem/utils/ fem/utils/char.hpp fem/utils/double_to_string.hpp fem/utils/equivalence.hpp fem/utils/int_types.hpp fem/utils/misc.hpp fem/utils/path.hpp fem/utils/random.hpp fem/utils/real_as_string.hpp fem/utils/simple_streams.hpp fem/utils/string.hpp fem/utils/string_to_double.hpp fem/utils/string_to_double_fmt.hpp fem/utils/token.hpp sent 204,008 bytes received 918 bytes 409,852.00 bytes/sec total size is 200,764 speedup is 0.98 building file list ... done gltbx/ gltbx/error.h gltbx/error_utils.h gltbx/fonts_ucs.h gltbx/glext.h gltbx/include_opengl.h gltbx/pointer_args_bpl.h gltbx/quadrics.h gltbx/special_wrapper_support.h gltbx/util.h sent 598,802 bytes received 190 bytes 1,197,984.00 bytes/sec total size is 597,954 speedup is 1.00 building file list ... done iotbx/ iotbx/error.h iotbx/detectors/ iotbx/detectors/bruker.h iotbx/detectors/display.h iotbx/detectors/image_divider.h iotbx/detectors/scanbox.h iotbx/detectors/context/ iotbx/detectors/context/spot_xy_convention.h iotbx/dsn6/ iotbx/dsn6/dsn6.hpp iotbx/mtz/ iotbx/mtz/batch.h iotbx/mtz/column.h iotbx/mtz/crystal.h iotbx/mtz/dataset.h iotbx/mtz/object.h iotbx/pdb/ iotbx/pdb/common_residue_names.h iotbx/pdb/hierarchy.h iotbx/pdb/hierarchy_atoms.h iotbx/pdb/hierarchy_bpl.h iotbx/pdb/hybrid_36_c.h iotbx/pdb/hybrid_36_cpp.h iotbx/pdb/input.h iotbx/pdb/modified_aa_names.h iotbx/pdb/modified_rna_dna_names.h iotbx/pdb/namespace.h iotbx/pdb/rna_dna_atom_names.h iotbx/pdb/small_str.h iotbx/pdb/utils.h iotbx/pdb/write_utils.h iotbx/pdb/write_utils_bpl.h iotbx/pdb/xray_structure.h iotbx/shelx/ iotbx/shelx/hklf.h iotbx/xplor/ iotbx/xplor/map_reader.h iotbx/xplor/map_writer.h sent 269,558 bytes received 629 bytes 180,124.67 bytes/sec total size is 266,716 speedup is 0.99 building file list ... done sent 464 bytes received 12 bytes 952.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done mmtbx/ mmtbx/error.h mmtbx/import_scitbx_af.h mmtbx/alignment/ mmtbx/alignment/align.h mmtbx/alignment/alignment.h mmtbx/alignment/tables.h mmtbx/building/ mmtbx/building/loop_closure/ mmtbx/building/loop_closure/ccd.h mmtbx/bulk_solvent/ mmtbx/bulk_solvent/bulk_solvent.h mmtbx/bulk_solvent/mosaic.h mmtbx/cablam/ mmtbx/cablam/cablam_align_utils.h mmtbx/den/ mmtbx/den/den.h mmtbx/dynamics/ mmtbx/dynamics/dynamics.h mmtbx/f_model/ mmtbx/f_model/f_model.h mmtbx/geometry/ mmtbx/geometry/asa.hpp mmtbx/geometry/calculator.hpp mmtbx/geometry/clash.hpp mmtbx/geometry/containment.hpp mmtbx/geometry/flattening.hpp mmtbx/geometry/indexing.hpp mmtbx/geometry/overlap.hpp mmtbx/geometry/primitive.hpp mmtbx/geometry/sphere_surface_sampling.hpp mmtbx/geometry/boost_python/ mmtbx/geometry/boost_python/containment.hpp mmtbx/geometry/boost_python/indexing.hpp mmtbx/geometry_restraints/ mmtbx/geometry_restraints/ramachandran.h mmtbx/geometry_restraints/reference_coordinate.h mmtbx/hydrogens/ mmtbx/hydrogens/hydrogens.h mmtbx/masks/ mmtbx/masks/atom_mask.h mmtbx/masks/grid_symop.h mmtbx/masks/util.h mmtbx/max_lik/ mmtbx/max_lik/max_lik.h mmtbx/max_lik/solvent_distribution_nco_09may2005.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short_uniform.h mmtbx/max_lik/solvent_distribution_nco_14mar2005.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_mod.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_short.h mmtbx/max_lik/wat_dist_r_0_1.h mmtbx/max_lik/wat_dist_r_2p0_2p5.h mmtbx/ncs/ mmtbx/ncs/cartesian_restraints.h mmtbx/ncs/tncs.h mmtbx/pair_interaction/ mmtbx/pair_interaction/interaction.h mmtbx/probe/ mmtbx/probe/Common.h mmtbx/probe/DotSpheres.h mmtbx/probe/Scoring.h mmtbx/probe/SpatialQuery.h mmtbx/reduce/ mmtbx/reduce/InteractionGraph.h mmtbx/reduce/Optimizers.h mmtbx/reduce/PositionReturn.h mmtbx/rotamer/ mmtbx/rotamer/fit.h mmtbx/rsr/ mmtbx/rsr/rsr.h mmtbx/scaling/ mmtbx/scaling/absolute_scaling.h mmtbx/scaling/outlier.h mmtbx/scaling/relative_scaling.h mmtbx/scaling/scaling.h mmtbx/scaling/twinning.h mmtbx/secondary_structure/ mmtbx/secondary_structure/dssp.hpp mmtbx/secondary_structure/identify.hpp mmtbx/tls/ mmtbx/tls/decompose.h mmtbx/tls/optimise_amplitudes.h mmtbx/tls/tls.h mmtbx/tls/utils.h mmtbx/utils/ mmtbx/utils/utils.h mmtbx/validation/ mmtbx/validation/ramachandran/ mmtbx/validation/ramachandran/rama8000_tables.h mmtbx/validation/ramachandran/rama_eval.h sent 2,050,731 bytes received 1,313 bytes 820,817.60 bytes/sec total size is 2,044,213 speedup is 1.00 building file list ... done omptbx/ omptbx/lock.h omptbx/omp_or_stubs.h omptbx/stubs.h sent 2,109 bytes received 76 bytes 4,370.00 bytes/sec total size is 1,850 speedup is 0.85 building file list ... done rstbx/ rstbx/backplane.h rstbx/import_scitbx_af.hpp rstbx/apps/ rstbx/apps/stills/ rstbx/apps/stills/simple_integration.h rstbx/bandpass/ rstbx/bandpass/parameters.h rstbx/bandpass/subpixel_joint_model.h rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/sensor.h rstbx/diffraction/ rstbx/diffraction/ewald_sphere.h rstbx/diffraction/partial_spot_position_partial_H.h rstbx/diffraction/reflection_range.h rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/fastbragg.h rstbx/dps_core/ rstbx/dps_core/direction.h rstbx/dps_core/directional_fft.h rstbx/dps_core/dps_core.h rstbx/dps_core/spotclass.h rstbx/indexing_api/ rstbx/indexing_api/indexing_api.h rstbx/simage/ rstbx/simage/image_simple.hpp rstbx/simulation/ rstbx/simulation/sim_xfel1.h rstbx/symmetry/ rstbx/symmetry/constraints/ rstbx/symmetry/constraints/a_g_conversion.h sent 111,360 bytes received 400 bytes 74,506.67 bytes/sec total size is 109,476 speedup is 0.98 building file list ... done scitbx/ scitbx/auto_array.h scitbx/constants.h scitbx/cubicle_neighbors.hpp scitbx/cubicles.h scitbx/error.h scitbx/error_utils.h scitbx/histogram.h scitbx/indexed_value.h scitbx/iso_surface.h scitbx/lbfgs.h scitbx/lbfgsb.h scitbx/mat2.h scitbx/mat3.h scitbx/numerical.h scitbx/r3_utils.hpp scitbx/random.h scitbx/random_legacy_boost_1_63.h scitbx/rational.h scitbx/rotr3.h scitbx/sym_mat2.h scitbx/sym_mat3.h scitbx/type_holder.h scitbx/vec2.h scitbx/vec3.h scitbx/weighted_histogram.h scitbx/array_family/ scitbx/array_family/array_adaptor.h scitbx/array_family/block_iterator.h scitbx/array_family/counts.h scitbx/array_family/error.h scitbx/array_family/flex_types.h scitbx/array_family/initialiser.h scitbx/array_family/linear_interpolation.h scitbx/array_family/loops.h scitbx/array_family/memory.h scitbx/array_family/misc_functions.h scitbx/array_family/owning_ref.h scitbx/array_family/range.h scitbx/array_family/ref.h scitbx/array_family/ref_matrix.h scitbx/array_family/ref_reductions.h scitbx/array_family/selections.h scitbx/array_family/shared.h scitbx/array_family/shared_plain.h scitbx/array_family/simple_io.h scitbx/array_family/simple_tiny_io.h scitbx/array_family/slice.h scitbx/array_family/small.h scitbx/array_family/small_plain.h scitbx/array_family/sort.h scitbx/array_family/tiny.h scitbx/array_family/tiny_mat_ref.h scitbx/array_family/tiny_plain.h scitbx/array_family/tiny_types.h scitbx/array_family/type_traits.h scitbx/array_family/versa.h scitbx/array_family/versa_matrix.h scitbx/array_family/versa_plain.h scitbx/array_family/accessors/ scitbx/array_family/accessors/c_grid.h scitbx/array_family/accessors/c_grid_padded.h scitbx/array_family/accessors/c_grid_padded_periodic.h scitbx/array_family/accessors/c_grid_periodic.h scitbx/array_family/accessors/c_index_1d_calculator.h scitbx/array_family/accessors/c_interval_grid.h scitbx/array_family/accessors/f_grid.h scitbx/array_family/accessors/flex_grid.h scitbx/array_family/accessors/mat_grid.h scitbx/array_family/accessors/packed_matrix.h scitbx/array_family/accessors/rectangular_full_packed.h scitbx/array_family/accessors/row_and_column.h scitbx/array_family/accessors/striding.h scitbx/array_family/accessors/traits.h scitbx/array_family/accessors/trivial.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/byte_str.h scitbx/array_family/boost_python/c_grid_flex_conversions.h scitbx/array_family/boost_python/flex_helpers.h scitbx/array_family/boost_python/flex_pickle_double_buffered.h scitbx/array_family/boost_python/flex_pickle_single_buffered.h scitbx/array_family/boost_python/flex_wrapper.h scitbx/array_family/boost_python/flex_wrapper_complex.h scitbx/array_family/boost_python/numpy_bridge.hpp scitbx/array_family/boost_python/owning_ref_conversions.h scitbx/array_family/boost_python/packed_to_flex_conversions.h scitbx/array_family/boost_python/passing_flex_by_reference.h scitbx/array_family/boost_python/range_wrappers.h scitbx/array_family/boost_python/ref_flex_conversions.h scitbx/array_family/boost_python/ref_from_array.h scitbx/array_family/boost_python/ref_pickle_double_buffered.h scitbx/array_family/boost_python/selections_wrapper.h scitbx/array_family/boost_python/shared_flat_conversions.h scitbx/array_family/boost_python/shared_flex_conversions.h scitbx/array_family/boost_python/shared_wrapper.h scitbx/array_family/boost_python/utils.h scitbx/array_family/detail/ scitbx/array_family/detail/auto_allocator.h scitbx/array_family/detail/generic_array_functors.h scitbx/array_family/detail/generic_array_operators.h scitbx/array_family/detail/misc.h scitbx/array_family/detail/push_back_etc.h scitbx/array_family/detail/reducing_boolean_mem_fun.h scitbx/array_family/detail/ref_helpers.h scitbx/array_family/detail/tiny_helpers.h scitbx/boost_python/ scitbx/boost_python/array_as_list.h scitbx/boost_python/container_conversions.h scitbx/boost_python/cstringio_utils.h scitbx/boost_python/is_polymorphic_workaround.h scitbx/boost_python/iterator_range.hpp scitbx/boost_python/iterator_wrappers.h scitbx/boost_python/pair_as_tuple.hpp scitbx/boost_python/sequence_as_array.h scitbx/boost_python/slice.h scitbx/boost_python/stl_map_as_dict.h scitbx/boost_python/utils.h scitbx/examples/ scitbx/examples/bevington/ scitbx/examples/bevington/prototype_core.h scitbx/fftpack/ scitbx/fftpack/complex_to_complex.h scitbx/fftpack/complex_to_complex_2d.h scitbx/fftpack/complex_to_complex_3d.h scitbx/fftpack/factorization.h scitbx/fftpack/gridding.h scitbx/fftpack/real_to_complex.h scitbx/fftpack/real_to_complex_3d.h scitbx/fftpack/detail/ scitbx/fftpack/detail/real_to_complex_backward.h scitbx/fftpack/detail/real_to_complex_forward.h scitbx/fftpack/detail/ref.h scitbx/glmtbx/ scitbx/glmtbx/family.h scitbx/glmtbx/glm.h scitbx/glmtbx/robust_glm.h scitbx/graphics_utils/ scitbx/graphics_utils/colors.h scitbx/lbfgs/ scitbx/lbfgs/drop_convergence_test.h scitbx/lbfgs/raw.h scitbx/lbfgs/raw_reference.h scitbx/lbfgsb/ scitbx/lbfgsb/fortran_interface.h scitbx/lbfgsb/raw.h scitbx/line_search/ scitbx/line_search/more_thuente_1994.h scitbx/line_search/more_thuente_1994_raw.h scitbx/lstbx/ scitbx/lstbx/normal_equations.h scitbx/math/ scitbx/math/2d_zernike_moments.h scitbx/math/accumulators.h scitbx/math/angle_derivative.h scitbx/math/approx_equal.h scitbx/math/atanh.h scitbx/math/basic_statistics.h scitbx/math/bessel.h scitbx/math/cartesian_product_fixed_size.hpp scitbx/math/chebyshev.h scitbx/math/compile_time.h scitbx/math/continued_fraction.h scitbx/math/copysign.h scitbx/math/cubic_equation.h scitbx/math/dihedral.h scitbx/math/distance_difference.h scitbx/math/distributions.h scitbx/math/eigensystem.h scitbx/math/erf.h scitbx/math/euler_angles.h scitbx/math/fast_approx_math.h scitbx/math/floating_point_epsilon.h scitbx/math/g_function.h scitbx/math/gamma.h scitbx/math/gaussian_fit_1d_analytical.h scitbx/math/gcd.h scitbx/math/golay.h scitbx/math/halton.h scitbx/math/icosahedron.h scitbx/math/imaginary.h scitbx/math/inertia_tensor.h scitbx/math/interpolation.h scitbx/math/jacks_expf.h scitbx/math/lambertw.h scitbx/math/least_squares_plane.h scitbx/math/linear_correlation.h scitbx/math/linear_interpolation.h scitbx/math/linear_regression.h scitbx/math/mean_and_variance.h scitbx/math/minimum_covering_sphere.h scitbx/math/modulo.h scitbx/math/namespace.h scitbx/math/numeric_limits.h scitbx/math/orthonormal_basis.h scitbx/math/parabolic_cylinder_d.h scitbx/math/phase_error.h scitbx/math/polygon_intersection.h scitbx/math/principal_axes_of_inertia.h scitbx/math/quadrature.h scitbx/math/r3_rotation.h scitbx/math/resample.h scitbx/math/rotate_around_axis.h scitbx/math/rotation.h scitbx/math/superpose.h scitbx/math/tetrahedron.h scitbx/math/traits.h scitbx/math/unimodular_generator.h scitbx/math/utils.h scitbx/math/weighted_covariance.h scitbx/math/zernike.h scitbx/math/zernike_moments.h scitbx/math/erf/ scitbx/math/erf/constants.h scitbx/math/erf/engine.h scitbx/math/gaussian/ scitbx/math/gaussian/fit.h scitbx/math/gaussian/namespace.h scitbx/math/gaussian/sum.h scitbx/math/gaussian/term.h scitbx/matrix/ scitbx/matrix/as_xyz.h scitbx/matrix/cholesky.h scitbx/matrix/delta_tensors.h scitbx/matrix/diagonal.h scitbx/matrix/eigensystem.h scitbx/matrix/givens.h scitbx/matrix/householder.h scitbx/matrix/inversion.h scitbx/matrix/lu_decomposition.h scitbx/matrix/matrix_vector_operations.h scitbx/matrix/move.h scitbx/matrix/multiply.h scitbx/matrix/norms.h scitbx/matrix/outer_product.h scitbx/matrix/packed.h scitbx/matrix/row_echelon.h scitbx/matrix/row_echelon_full_pivoting.h scitbx/matrix/row_echelon_full_pivoting_impl.h scitbx/matrix/row_echelon_full_pivoting_small.h scitbx/matrix/special_matrices.h scitbx/matrix/svd.h scitbx/matrix/symmetric_rank_1_update.h scitbx/matrix/tensor_rank_2.h scitbx/matrix/tensors.h scitbx/matrix/tests.h scitbx/matrix/transpose_multiply.h scitbx/matrix/triangular_systems.h scitbx/matrix/vector_operations.h scitbx/matrix/tests/ scitbx/matrix/tests/utils.h scitbx/minpack/ scitbx/minpack/levenberg_marquardt.h scitbx/minpack/raw.h scitbx/misc/ scitbx/misc/file_utils.h scitbx/misc/positive_getitem_index.h scitbx/misc/split_lines.h scitbx/random/ scitbx/random/mersenne_twister.h scitbx/random/variate_generator.h scitbx/random/boost_python/ scitbx/random/boost_python/random.h scitbx/rigid_body/ scitbx/rigid_body/array_packing.h scitbx/rigid_body/body_lib.h scitbx/rigid_body/body_t.h scitbx/rigid_body/featherstone.h scitbx/rigid_body/joint_lib.h scitbx/rigid_body/joint_t.h scitbx/rigid_body/matrix_helpers.h scitbx/rigid_body/namespace.h scitbx/rigid_body/spatial_lib.h scitbx/rigid_body/tardy.h scitbx/serialization/ scitbx/serialization/base_256.h scitbx/serialization/double_buffered.h scitbx/serialization/single_buffered.h scitbx/slatec/ scitbx/slatec/lib_c.h scitbx/slatec/lib_cpp.h scitbx/sparse/ scitbx/sparse/approx_equal.h scitbx/sparse/dfs.h scitbx/sparse/io.h scitbx/sparse/lu_factorization.h scitbx/sparse/matrix.h scitbx/sparse/operators.h scitbx/sparse/random.h scitbx/sparse/triangular.h scitbx/sparse/util.h scitbx/sparse/vector.h scitbx/sparse/boost_python/ scitbx/sparse/boost_python/vector.h scitbx/stl/ scitbx/stl/map_as_python_dict.h scitbx/stl/map_fwd.h scitbx/stl/map_wrapper.h scitbx/stl/set_wrapper.h scitbx/stl/vector_as_python_list.h scitbx/stl/vector_io.h scitbx/stl/vector_wrapper.h scitbx/suffixtree/ scitbx/suffixtree/builder.hpp scitbx/suffixtree/edge.hpp scitbx/suffixtree/exception.hpp scitbx/suffixtree/glyph.hpp scitbx/suffixtree/iterator.hpp scitbx/suffixtree/matching_statistics.hpp scitbx/suffixtree/tree.hpp scitbx/suffixtree/word.hpp scitbx/suffixtree/boost_python/ scitbx/suffixtree/boost_python/edge_exports.hpp scitbx/suffixtree/boost_python/iterator_wrapper.hpp scitbx/suffixtree/boost_python/object_extensions.hpp scitbx/suffixtree/boost_python/tree_exports.hpp scitbx/util/ scitbx/util/cpu_timer.h scitbx/wigner/ scitbx/wigner/wigner3j.h sent 1,905,330 bytes received 5,521 bytes 764,340.40 bytes/sec total size is 1,885,050 speedup is 0.99 building file list ... done sent 185 bytes received 12 bytes 394.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/error.h smtbx/import_cctbx.h smtbx/import_scitbx_af.h smtbx/ab_initio/ smtbx/ab_initio/density_modification.h smtbx/refinement/ smtbx/refinement/import_cctbx_xray.h smtbx/refinement/least_squares.h smtbx/refinement/weighting_schemes.h smtbx/refinement/constraints/ smtbx/refinement/constraints/affine.h smtbx/refinement/constraints/direction.h smtbx/refinement/constraints/geometrical_hydrogens.h smtbx/refinement/constraints/occupancy.h smtbx/refinement/constraints/proxy.h smtbx/refinement/constraints/reparametrisation.h smtbx/refinement/constraints/rigid.h smtbx/refinement/constraints/same_group.h smtbx/refinement/constraints/scaled_adp.h smtbx/refinement/constraints/scatterer_parameters.h smtbx/refinement/constraints/shared.h smtbx/refinement/constraints/special_position.h smtbx/refinement/constraints/symmetry_equivalent.h smtbx/refinement/constraints/u_eq_dependent_u_iso.h smtbx/refinement/constraints/u_iso_dependent_u_iso.h smtbx/refinement/restraints/ smtbx/refinement/restraints/origin_fixing.h smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/standard_xray.h smtbx/structure_factors/direct/table_based.h sent 182,146 bytes received 512 bytes 121,772.00 bytes/sec total size is 179,686 speedup is 0.98 building file list ... done spotfinder/ spotfinder/applications/ spotfinder/applications/find_active_area.h spotfinder/core_toolbox/ spotfinder/core_toolbox/distl.h spotfinder/core_toolbox/hough.h spotfinder/core_toolbox/libdistl.h spotfinder/core_toolbox/spot_shapes.h spotfinder/core_toolbox/spot_types.h spotfinder/core_toolbox/spotfilter.h spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/singlemask.h spotfinder/dxtbx_toolbox/ spotfinder/dxtbx_toolbox/distl.h spotfinder/dxtbx_toolbox/libdistl.h sent 42,937 bytes received 221 bytes 86,316.00 bytes/sec total size is 41,966 speedup is 0.97 building file list ... done tbxx/ tbxx/alignment.h tbxx/error_utils.hpp tbxx/libc_backtrace.hpp tbxx/optional_copy.hpp tbxx/pretty_type_name.hpp tbxx/time_accu.hpp sent 12,026 bytes received 133 bytes 24,318.00 bytes/sec total size is 11,532 speedup is 0.95 building file list ... done sent 149 bytes received 12 bytes 107.33 bytes/sec total size is 0 speedup is 0.00 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/ cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/ scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,359 bytes received 537 bytes 695,792.00 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 250 bytes received 12 bytes 174.67 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ sent 505 bytes received 22 bytes 1,054.00 bytes/sec total size is 6,883 speedup is 13.06 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ sent 235 bytes received 22 bytes 171.33 bytes/sec total size is 1,215 speedup is 4.73 building file list ... done sent 143 bytes received 12 bytes 310.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/web.install.csh sent 3,061 bytes received 41 bytes 2,068.00 bytes/sec total size is 39,547 speedup is 12.75 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ sent 478 bytes received 22 bytes 1,000.00 bytes/sec total size is 31,515 speedup is 63.03 building file list ... done dxtbx/ dxtbx/command_line/ sent 864 bytes received 22 bytes 1,772.00 bytes/sec total size is 81,902 speedup is 92.44 building file list ... done fable/ fable/command_line/ sent 456 bytes received 22 bytes 318.67 bytes/sec total size is 15,542 speedup is 32.51 building file list ... done gltbx/ gltbx/command_line/ sent 192 bytes received 22 bytes 428.00 bytes/sec total size is 606 speedup is 2.83 building file list ... done iotbx/ iotbx/command_line/ sent 2,862 bytes received 22 bytes 1,922.67 bytes/sec total size is 217,626 speedup is 75.46 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/csh.sh libtbx/command_line/exec.sh libtbx/command_line/gdb.sh libtbx/command_line/latex.sh libtbx/command_line/pdflatex.sh libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/sh.sh libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh sent 7,221 bytes received 329 bytes 15,100.00 bytes/sec total size is 156,446 speedup is 20.72 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 5,727 bytes received 51 bytes 11,556.00 bytes/sec total size is 805,446 speedup is 139.40 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ sent 770 bytes received 22 bytes 1,584.00 bytes/sec total size is 11,108 speedup is 14.03 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,738 bytes received 136 bytes 7,916.00 bytes/sec total size is 9,958 speedup is 0.84 building file list ... done sent 185 bytes received 12 bytes 394.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ sent 874 bytes received 22 bytes 1,792.00 bytes/sec total size is 37,436 speedup is 41.78 building file list ... done spotfinder/ spotfinder/command_line/ sent 522 bytes received 22 bytes 1,088.00 bytes/sec total size is 22,750 speedup is 41.82 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ sent 462 bytes received 22 bytes 968.00 bytes/sec total size is 16,078 speedup is 33.22 building file list ... done sent 250 bytes received 12 bytes 174.67 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,618 bytes received 515 bytes 184,266.00 bytes/sec total size is 89,657 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,205 bytes received 34 bytes 826.00 bytes/sec total size is 967 speedup is 0.78 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 7,589 bytes received 44 bytes 15,266.00 bytes/sec total size is 9,205 speedup is 1.21 building file list ... done cctbx/adp_restraints/ cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/development/ cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/merging/ cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/maptbx/ cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_cod.csh cctbx/regression/ cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/targets/ sent 436,081 bytes received 879 bytes 291,306.67 bytes/sec total size is 2,034,432 speedup is 4.66 building file list ... done cma_es/ sent 116 bytes received 19 bytes 90.00 bytes/sec total size is 3,008 speedup is 22.28 building file list ... done crys3d/regression/ sent 375 bytes received 15 bytes 780.00 bytes/sec total size is 41,841 speedup is 107.28 building file list ... done sent 642 bytes received 12 bytes 436.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 12,863 bytes received 91 bytes 25,908.00 bytes/sec total size is 151,847 speedup is 11.72 building file list ... done sent 225 bytes received 12 bytes 158.00 bytes/sec total size is 8,108 speedup is 34.21 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/detectors/ iotbx/dsn6/ iotbx/examples/ iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/kriber/ iotbx/mtz/ iotbx/pdb/ iotbx/pdb/remediation/ iotbx/regression/ iotbx/regression/ncs/ iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/shelx/ iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ sent 265,118 bytes received 499 bytes 531,234.00 bytes/sec total size is 2,334,818 speedup is 8.79 building file list ... done libtbx/phil/ libtbx/queuing_system_utils/ sent 1,242 bytes received 18 bytes 2,520.00 bytes/sec total size is 243,381 speedup is 193.16 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/building/ mmtbx/building/ligands/ mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/chemical_components/ mmtbx/conformation_dependent_library/ mmtbx/density_modification/ mmtbx/disorder/ mmtbx/dynamics/ mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/torsion_restraints/ mmtbx/hydrogens/ mmtbx/ias/ mmtbx/idealized_aa_residues/ mmtbx/ions/ mmtbx/ions/svm/ mmtbx/ligands/ mmtbx/maps/ mmtbx/masks/ mmtbx/masks/tst_mask.cpp mmtbx/max_lik/ mmtbx/monomer_library/ mmtbx/nci/ mmtbx/pair_interaction/ mmtbx/polygon/ mmtbx/probe/ mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/reduce/ mmtbx/refinement/ mmtbx/refinement/real_space/ mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/rotamer/ mmtbx/rsr/ mmtbx/scaling/ mmtbx/secondary_structure/ mmtbx/secondary_structure/build/ mmtbx/utils/ mmtbx/validation/ mmtbx/validation/regression/ mmtbx/wwpdb/ sent 748,906 bytes received 854 bytes 499,840.00 bytes/sec total size is 6,530,029 speedup is 8.71 building file list ... done omptbx/ sent 95 bytes received 19 bytes 228.00 bytes/sec total size is 1,175 speedup is 10.31 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/cftbx/ rstbx/diffraction/ rstbx/diffraction/fastbragg/ rstbx/dps_core/ rstbx/indexing/ rstbx/simage/ rstbx/simulation/ rstbx/sublattice_support/ rstbx/viewer/ sent 1,036 bytes received 45 bytes 2,162.00 bytes/sec total size is 179,407 speedup is 165.96 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graphics_utils/ scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/essence/ scitbx/rigid_body/proto/ scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ sent 674,940 bytes received 1,349 bytes 450,859.33 bytes/sec total size is 1,108,176 speedup is 1.64 building file list ... done sent 185 bytes received 12 bytes 131.33 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py sent 130,445 bytes received 231 bytes 261,352.00 bytes/sec total size is 208,206 speedup is 1.59 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,474 bytes received 37 bytes 3,674.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 493 bytes received 41 bytes 1,068.00 bytes/sec total size is 323 speedup is 0.60 building file list ... done wxtbx/regression/ wxtbx/regression/tst_process_control.py sent 2,009 bytes received 34 bytes 1,362.00 bytes/sec total size is 1,770 speedup is 0.87 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cma_es/cma/ cma_es/cma/initials.par fable/fem/ fable/fem/major_types.hpp fable/test/sf_times.py fable/test/lenient/ fable/test/lenient/NOTE fable/test/lenient/calling_non_external_arg.f fable/test/lenient/str_blank_str.f fable/test/lenient/str_cont_line_str.f fable/test/semantic_error/ fable/test/semantic_error/assignment_to_parameter.f fable/test/semantic_error/calling_array.f fable/test/semantic_error/calling_dimension.f fable/test/semantic_error/common_equivalence.f fable/test/semantic_error/dimension_unknown_data_type.f fable/test/semantic_error/dims_repeated_in_common.f fable/test/semantic_error/dims_repeated_in_dimension.f fable/test/semantic_error/equivalence_external.f fable/test/semantic_error/external_array.f fable/test/semantic_error/external_common.f fable/test/semantic_error/function_data_type_decl_twice.f fable/test/semantic_error/function_name_is_also_arg.f fable/test/semantic_error/inquire_both_unit_and_file.f fable/test/semantic_error/inquire_no_unit_no_file.f fable/test/semantic_error/intrinsic_common.f fable/test/semantic_error/intrinsic_dimension.f fable/test/semantic_error/missing_include.f fable/test/semantic_error/parameter_array.f fable/test/semantic_error/parameter_in_common.f fable/test/semantic_error/parameter_in_sub_args.f fable/test/semantic_error/parameter_save.f fable/test/semantic_error/real_declared_twice.f fable/test/semantic_error/recursion_in_declaration.f fable/test/semantic_error/sub_fun_2.f fable/test/semantic_error/subroutine_name_is_also_arg.f fable/test/semantic_error/twice_in_sub_args.f fable/test/semantic_error/unknown_intrinsic.f fable/test/semantic_error/write_end.f fable/test/semantic_error/write_without_unit.f fable/test/syntax_error/ fable/test/syntax_error/bad_after_dot.f fable/test/syntax_error/bad_and.f fable/test/syntax_error/bad_complex_literal_1.f fable/test/syntax_error/bad_complex_literal_2.f fable/test/syntax_error/bad_data.f fable/test/syntax_error/bad_false.f fable/test/syntax_error/bad_format_1.f fable/test/syntax_error/bad_format_2.f fable/test/syntax_error/bad_format_3.f fable/test/syntax_error/bad_format_4.f fable/test/syntax_error/bad_format_5.f fable/test/syntax_error/bad_format_6.f fable/test/syntax_error/bad_format_7.f fable/test/syntax_error/bad_gt.f fable/test/syntax_error/bad_implied_do_1.f fable/test/syntax_error/bad_implied_do_2.f fable/test/syntax_error/bad_implied_do_3.f fable/test/syntax_error/bad_implied_do_4.f fable/test/syntax_error/bad_implied_do_5.f fable/test/syntax_error/bad_implied_do_6.f fable/test/syntax_error/bad_not.f fable/test/syntax_error/bad_not_2.f fable/test/syntax_error/bad_open_err_label.f fable/test/syntax_error/bad_or.f fable/test/syntax_error/bad_true.f fable/test/syntax_error/bare_data.f fable/test/syntax_error/bare_external.f fable/test/syntax_error/bare_integer_i.f fable/test/syntax_error/bare_print.f fable/test/syntax_error/closing_parenthesis_without_matching.f fable/test/syntax_error/common_with_data_size.f fable/test/syntax_error/data_plus_repetition.f fable/test/syntax_error/dimension_with_data_size.f fable/test/syntax_error/dot_e.f fable/test/syntax_error/duplicate_format_label.f fable/test/syntax_error/exclamation_mark_syndrome.f fable/test/syntax_error/format_without_label.f fable/test/syntax_error/fun_star.f fable/test/syntax_error/j_assign_i_percent_5.f fable/test/syntax_error/label_cont_char.f fable/test/syntax_error/label_empty.f fable/test/syntax_error/not_an_identifier.f fable/test/syntax_error/opening_parenthesis_without_matching.f fable/test/syntax_error/power_no_base.f fable/test/syntax_error/power_no_exponent.f fable/test/syntax_error/read_plus_name.f fable/test/syntax_error/read_star_comma_empty.f fable/test/syntax_error/read_star_name.f fable/test/syntax_error/save_bad_comma.f fable/test/syntax_error/save_num_comma_colon.f fable/test/syntax_error/save_num_val_colon.f fable/test/syntax_error/save_slash_slash.f fable/test/syntax_error/save_with_dims.f fable/test/syntax_error/sub_bad_comma.f fable/test/syntax_error/sub_bad_trailing.f fable/test/syntax_error/sub_no_name.f fable/test/syntax_error/sub_open_parenthesis.f fable/test/syntax_error/sub_percent_3.f fable/test/syntax_error/x_assign_1dotd.f fable/test/syntax_error/x_assign_1ex.f fable/test/syntax_error/x_assign_dot.f fable/test/syntax_error/x_assign_dot_2.f fable/test/unsupported/ fable/test/unsupported/goto_into_loop.f fable/test/unsupported/hollerith_cont_lines.f fable/test/unsupported/hollerith_with_quotes.f fable/test/unsupported/parameter_pow.f fable/test/valid/ fable/test/valid/add_dp_integer.f fable/test/valid/add_real_integer.f fable/test/valid/add_reals.f fable/test/valid/add_strings.f fable/test/valid/arr_float_2.f fable/test/valid/array_origin.f fable/test/valid/assign_to_array_elements.f fable/test/valid/blockdata_named.f fable/test/valid/blockdata_unnamed.f fable/test/valid/character_1_array_passing.f fable/test/valid/character_1_f90.f fable/test/valid/character_function.f fable/test/valid/character_function_2.f fable/test/valid/character_function_3.f fable/test/valid/combine_decl_1.f fable/test/valid/comments.f fable/test/valid/common_0.f fable/test/valid/common_1.f fable/test/valid/common_2.f fable/test/valid/common_3.f fable/test/valid/common_4.f fable/test/valid/common_equivalence_1.f fable/test/valid/common_equivalence_2.f fable/test/valid/common_equivalence_3.f fable/test/valid/common_equivalence_4.f fable/test/valid/common_equivalence_5.f fable/test/valid/common_equivalence_simple_1.f fable/test/valid/common_equivalence_simple_2.f fable/test/valid/common_equivalence_simple_3.f fable/test/valid/common_equivalence_simple_4.f fable/test/valid/common_equivalence_simple_5.f fable/test/valid/common_equivalence_simple_6.f fable/test/valid/common_name_clash.f fable/test/valid/common_name_clash_2.f fable/test/valid/common_name_clash_3.f fable/test/valid/common_save_members.f fable/test/valid/common_variants.f fable/test/valid/commonymous.f fable/test/valid/const_analysis_1.f fable/test/valid/const_analysis_2.f fable/test/valid/const_expressions.f fable/test/valid/const_expressions_2.f fable/test/valid/conv_recipe.f fable/test/valid/cycle_exit.f fable/test/valid/data_01.f fable/test/valid/data_02.f fable/test/valid/data_03.f fable/test/valid/data_04.f fable/test/valid/data_05.f fable/test/valid/data_06.f fable/test/valid/data_07.f fable/test/valid/data_08.f fable/test/valid/data_09.f fable/test/valid/data_10.f fable/test/valid/data_11.f fable/test/valid/data_12.f fable/test/valid/data_13.f fable/test/valid/data_14.f fable/test/valid/data_15.f fable/test/valid/data_16.f fable/test/valid/data_17.f fable/test/valid/data_18.f fable/test/valid/data_19.f fable/test/valid/data_20.f fable/test/valid/data_21.f fable/test/valid/data_22.f fable/test/valid/data_23.f fable/test/valid/data_24.f fable/test/valid/data_25.f fable/test/valid/data_26.f fable/test/valid/data_27.f fable/test/valid/data_28.f fable/test/valid/data_29.f fable/test/valid/data_30.f fable/test/valid/data_31.f fable/test/valid/data_32.f fable/test/valid/data_byte.f fable/test/valid/data_double_from_double_and_float.f fable/test/valid/data_str_arr.f fable/test/valid/data_type_star.f fable/test/valid/data_types.f fable/test/valid/decl_before_if.f fable/test/valid/dependency_cycle.f fable/test/valid/dim_with_parameter.f fable/test/valid/dimensions.f fable/test/valid/do_enddo.f fable/test/valid/do_ix_num.f fable/test/valid/do_label.f fable/test/valid/do_variable_passed.f fable/test/valid/do_while.f fable/test/valid/doc_data_type_star.f fable/test/valid/double_literal.f fable/test/valid/dp_example.f fable/test/valid/dynamic_parameters_1.f fable/test/valid/dynamic_parameters_2.f fable/test/valid/dynamic_parameters_3.f fable/test/valid/dynamic_parameters_4.f fable/test/valid/dynamic_parameters_5.f fable/test/valid/entry_fun_1.f fable/test/valid/entry_fun_2.f fable/test/valid/entry_sub_1.f fable/test/valid/entry_sub_2.f fable/test/valid/equivalence_01.f fable/test/valid/equivalence_02.f fable/test/valid/equivalence_03.f fable/test/valid/equivalence_04.f fable/test/valid/equivalence_05.f fable/test/valid/equivalence_06.f fable/test/valid/equivalence_07.f fable/test/valid/equivalence_08.f fable/test/valid/equivalence_09.f fable/test/valid/equivalence_10.f fable/test/valid/equivalence_11.f fable/test/valid/equivalence_12.f fable/test/valid/equivalence_data.f fable/test/valid/equivalence_mixed.f fable/test/valid/equivalence_repeated.f fable/test/valid/external_arg_function.f fable/test/valid/external_arg_layers.f fable/test/valid/external_arg_non_const.f fable/test/valid/external_arg_pass_call.f fable/test/valid/external_arg_simple.f fable/test/valid/external_arg_subroutine.f fable/test/valid/f90_ne_token.f fable/test/valid/file_names_and_expected_cout fable/test/valid/flush_external.f fable/test/valid/flush_intrinsic.f fable/test/valid/format_escape.f fable/test/valid/format_nested.f fable/test/valid/format_quote_syndrome.f fable/test/valid/format_str_blank_str.f fable/test/valid/format_used_twice.f fable/test/valid/formats.f fable/test/valid/function_calls_with_its_name_as_arg.f fable/test/valid/function_data_type_in_body.f fable/test/valid/function_no_arg.f fable/test/valid/function_no_arg_with_common_in_expression.f fable/test/valid/function_two_returns_1.f fable/test/valid/function_two_returns_2.f fable/test/valid/function_write.f fable/test/valid/goto_computed.f fable/test/valid/goto_forms.f fable/test/valid/goto_last_do.f fable/test/valid/goto_spaghetti.f fable/test/valid/goto_target_before_else.f fable/test/valid/hexadecimal.f fable/test/valid/hollerith.f fable/test/valid/identifier_prefix.f fable/test/valid/if_arithmetic.f fable/test/valid/if_cond_if_arithmetic.f fable/test/valid/if_else_endif.f fable/test/valid/if_elseif_else_endif.f fable/test/valid/if_endif.f fable/test/valid/if_spaghetti.f fable/test/valid/if_write.f fable/test/valid/implicit_integer_a.f fable/test/valid/implicit_ranges.f fable/test/valid/implied_external_arg_sub.f fable/test/valid/implied_external_arg_sub_2.f fable/test/valid/implied_program.f fable/test/valid/implied_trailing_program.f fable/test/valid/inquire.f fable/test/valid/inquire_opened.f fable/test/valid/int_literal_eq_int_literal.f fable/test/valid/integer_star_2_array.f fable/test/valid/intrinsic_with_data_type.f fable/test/valid/intrinsics_extra.f fable/test/valid/intrinsics_iargc_getarg.f fable/test/valid/intrinsics_legacy.f fable/test/valid/label_format.f fable/test/valid/len_trim.f fable/test/valid/logical_a_or_b.f fable/test/valid/logical_ops.f fable/test/valid/long_lines.f fable/test/valid/main_cmn_indirect.f fable/test/valid/mod_integers.f fable/test/valid/open_chain.f fable/test/valid/open_write_read.f fable/test/valid/open_write_read_2.f fable/test/valid/ops.f fable/test/valid/parameter_for_arg_and_cmn_dim.f fable/test/valid/parameter_n.f fable/test/valid/parameter_save.f fable/test/valid/parameter_save_common.f fable/test/valid/parameters_2.f fable/test/valid/parameters_recursive.f fable/test/valid/parameters_recursive_2.f fable/test/valid/passing_arrays.f fable/test/valid/passing_arrays_2.f fable/test/valid/passing_strings.f fable/test/valid/power.f fable/test/valid/power_2.f fable/test/valid/print.f fable/test/valid/read_end.f fable/test/valid/read_end_empty.f fable/test/valid/read_end_err.f fable/test/valid/read_end_err_star_double.f fable/test/valid/read_err.f fable/test/valid/read_fmt_double.f fable/test/valid/read_fmt_past_end_of_line.f fable/test/valid/read_fmt_real.f fable/test/valid/read_fmt_slash.f fable/test/valid/read_fmt_string.f fable/test/valid/read_fmt_x.f fable/test/valid/read_format.f fable/test/valid/read_implied_do_1.f fable/test/valid/read_iostat_end_err_1.f fable/test/valid/read_iostat_end_err_2.f fable/test/valid/read_iostat_from_file.f fable/test/valid/read_iostat_from_string.f fable/test/valid/read_lines.f fable/test/valid/read_rec_iostat.f fable/test/valid/read_star.f fable/test/valid/read_star_empty.f fable/test/valid/read_star_integer.f fable/test/valid/read_star_print_star.f fable/test/valid/read_test_1.f fable/test/valid/read_test_1_iostat.f fable/test/valid/read_test_2.f fable/test/valid/read_test_3.f fable/test/valid/read_unformatted_str_arr.f fable/test/valid/real_array_sum.f fable/test/valid/recursive_subroutine.f fable/test/valid/rewind.f fable/test/valid/save_0.f fable/test/valid/save_1.f fable/test/valid/save_2.f fable/test/valid/save_3.f fable/test/valid/save_equivalence_1.f fable/test/valid/scopes_1.f fable/test/valid/scopes_2.f fable/test/valid/scopes_3.f fable/test/valid/scopes_4.f fable/test/valid/sf.f fable/test/valid/sign.f fable/test/valid/stop_bare.f fable/test/valid/stop_integer.f fable/test/valid/stop_string.f fable/test/valid/string_array.f fable/test/valid/string_array_declarations.f fable/test/valid/string_assign_to_slice.f fable/test/valid/string_common_dims.f fable/test/valid/string_compare.f fable/test/valid/string_concat.f fable/test/valid/string_spanning_continuation_lines.f fable/test/valid/string_sub_array_passing.f fable/test/valid/strings_size_dim.f fable/test/valid/strings_size_dim_data.f fable/test/valid/sub_fun_1.f fable/test/valid/sub_fun_3.f fable/test/valid/sub_nums_size_capacity.f fable/test/valid/sub_star.f fable/test/valid/subroutine_1.f fable/test/valid/subroutine_2.f fable/test/valid/subroutine_3.f fable/test/valid/subroutine_4.f fable/test/valid/subroutine_5.f fable/test/valid/subroutine_6.f fable/test/valid/subroutine_7.f fable/test/valid/subroutine_8.f fable/test/valid/subroutine_9.f fable/test/valid/subroutine_write_iunit.f fable/test/valid/subroutine_zero.f fable/test/valid/tab_syndrome.f fable/test/valid/triple_3d.f fable/test/valid/triple_3d_common.f fable/test/valid/unformatted_experiments.f fable/test/valid/unused_arg_implicit_none.f fable/test/valid/unused_args.f fable/test/valid/using_intrinsics.f fable/test/valid/write_1.f fable/test/valid/write_err.f fable/test/valid/write_extra_parentheses.f fable/test/valid/write_fmt_double.f fable/test/valid/write_format.f fable/test/valid/write_format_with_colon.f fable/test/valid/write_implied_do_1.f fable/test/valid/write_implied_do_2.f fable/test/valid/write_implied_do_3.f fable/test/valid/write_implied_do_4.f fable/test/valid/write_implied_do_5.f fable/test/valid/write_internal_file.f fable/test/valid/write_internal_file_2.f fable/test/valid/write_internal_file_3.f fable/test/valid/write_internal_file_4.f fable/test/valid/write_pow.f fable/test/valid/write_read_end_err_implied_do.f fable/test/valid/write_read_unformatted.f fable/test/valid/write_star.f fable/test/valid/write_star_real_star_4.f fable/test/valid/write_star_real_star_8.f iotbx/bioinformatics/test/alignment.pir iotbx/bioinformatics/test/ebi_blast.xml.gz iotbx/bioinformatics/test/ncbi_blast.xml.gz iotbx/ccp4_map/ccp4_20_21_22_to_30_40_50.ccp4 iotbx/examples/pdb_truncate_to_ala/crambin_pieces.pdb iotbx/examples/pdb_truncate_to_ala/resname_mix.pdb iotbx/examples/pdb_truncate_to_ala/tutorial.txt iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py iotbx/examples/pdb_truncate_to_ala/v2_simple.py iotbx/examples/pdb_truncate_to_ala/v3_better.py iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py iotbx/regression/data/ iotbx/regression/data/1yjp.pdb iotbx/regression/data/2ERL.pdb iotbx/regression/data/D7.ccp4 iotbx/regression/data/big_cube_model.pdb iotbx/regression/data/cu3182Isup2.hkl iotbx/regression/data/cu3182sup1.cif iotbx/regression/data/insulin_unmerged_cutted_from_ccp4.mtz iotbx/regression/data/mmma.ccp4 iotbx/regression/data/mmmab.ccp4 iotbx/regression/data/mmmb.ccp4 iotbx/regression/data/non_zero_origin_map.ccp4 iotbx/regression/data/non_zero_origin_model.pdb iotbx/regression/data/non_zero_origin_model_split.pdb iotbx/regression/data/non_zero_origin_ncs_model.pdb iotbx/regression/data/non_zero_origin_ncs_spec.ncs_spec iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 4,273,599 bytes received 8,714 bytes 342,585.04 bytes/sec total size is 4,208,590 speedup is 0.98 make[1]: Leaving directory '/<>' dh_install -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0//usr/lib/riscv64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libcbf-private.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libccp4io.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libcctbx.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libomptbx.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/librstbx.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/tmp/usr/lib/riscv64-linux-gnu/libspotfinder.so.0 debian/tmp/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0//usr/lib/riscv64-linux-gnu/ install -m0755 -d debian/libcctbx-dev//usr cp --reflink=auto -a debian/tmp/usr/include/ debian/libcctbx-dev//usr/ install -m0755 -d debian/libcctbx-dev//usr/lib/riscv64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/riscv64-linux-gnu/libann_adaptor.so debian/tmp/usr/lib/riscv64-linux-gnu/libasymmetric_map.so debian/tmp/usr/lib/riscv64-linux-gnu/libcbf-private.so debian/tmp/usr/lib/riscv64-linux-gnu/libccp4io.so debian/tmp/usr/lib/riscv64-linux-gnu/libcctbx.so debian/tmp/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so debian/tmp/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so debian/tmp/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so debian/tmp/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so debian/tmp/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so debian/tmp/usr/lib/riscv64-linux-gnu/libomptbx.so debian/tmp/usr/lib/riscv64-linux-gnu/librstbx.so debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so debian/tmp/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so debian/tmp/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so debian/tmp/usr/lib/riscv64-linux-gnu/libspotfinder.so debian/libcctbx-dev//usr/lib/riscv64-linux-gnu/ install -m0755 -d debian/python3-cctbx//usr cp --reflink=auto -a debian/tmp/usr/bin debian/python3-cctbx//usr/ install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/cctbx debian/tmp/usr/lib/python3.12 debian/python3-cctbx//usr/lib/ dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/copyright debian/libcctbx0/usr/share/doc/libcctbx0/copyright install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/copyright debian/libcctbx-dev/usr/share/doc/libcctbx-dev/copyright install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/copyright debian/python3-cctbx/usr/share/doc/python3-cctbx/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.trimmed debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.trimmed debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.trimmed debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240401 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=True, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:166: skipping package libcctbx0 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:166: skipping package libcctbx-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=cctbx, binary packages=['python3-cctbx'] D: dh_python3 dh_python3:204: processing package python3-cctbx... D: dh_python3 fs:50: moving files from debian/python3-cctbx/usr/lib/python3.12/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:231: invoking: /usr/bin/python3.12 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:418: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_cablam_align_utils_ext.so to mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming omptbx_ext.so to omptbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming annlib_ext.so to annlib_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_ext.so to rstbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cma_es_ext.so to cma_es_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming ccp4io_adaptbx_ext.so to ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_rational_ext.so to boost_rational_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming std_pair_ext.so to std_pair_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cbflib_ext.so to cbflib_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming fable_ext.so to fable_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming boost_optional_ext.so to boost_optional_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming regression_test_ext.so to regression_test_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming dxtbx_ext.so to dxtbx_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so I: dh_python3 fs:418: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-312-riscv64-linux-gnu.so D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.csh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.unicode_examples): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wavelength_units): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.box_around_molecule): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.scons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dtrek.to_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.xray_structure.show): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_modules): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.xplor.map.show_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_in_repositories): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mask): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_platform_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.simulate_low_res_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maximum_entropy_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.form_factor_query): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fmodel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_install_script_bat): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_variable_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_binary_bundle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.arginine_geometry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.unpack_in_sources): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_under_build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_reserved_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.compute_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_windows_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_header): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.evalurama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fobs_minus_fobs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.any2unix): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_calls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.thin_client): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.geometry_minimization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_model_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.subgroups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.comparama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_lib_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.add_from_future_import_division): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.valgrind): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xmanip): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install_conda): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.dtrace): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.structure_factor_timings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.git_avoid_merges): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.wait_for_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.split_data_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.printenv): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbf.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.tst_memory): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_restraints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.wx_display): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_contains_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.easy_qsub): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_as_fasta): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.gcd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_but_no_repr): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.raise_exception_for_testing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_source_files_sorted_by_size): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_exp_times): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.models_as_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports_crude): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.table_one): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.inexact): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_sys_executable): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.hbond): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.apply_ncs_to_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.py_compile_all): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_pythonpath): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.int_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.symmetry_search): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.bfactor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_does_not_contain_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.isomorphous_difference_patterson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/annlib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.verify_mon_lib_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.prime_factors_of): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.seconds_since_the_epoch): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_all_on_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cc_star): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.feature_enhanced_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.split_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_regression.test_nightly): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clear_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_suspicious_residues): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.estimate_bijvoet_ratio): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.sweep_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_include_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.visualize_r_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.anomalous_differences_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.patterson_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.configure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_training): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rank_scale_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.cout): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_untested): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_diff_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.partial_omit_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.probe2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.space_group_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.brehm_diederichs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.flip_symmetric_amino_acids): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/samosa.scale): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_old_style_classes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.r_factor_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bibtex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_sizes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cbf_read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.multiplicity_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz2map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.b_factor_stats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.example_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_remediator): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.aev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_tls_groups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_cctbx_bundle_for_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.lattice_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/labelit.png): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_as_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_view_ad_hoc): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_ions): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.create): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.exec): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_r_factors_by_shell): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_atoms_by_name): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.link_as_geometry_restraints_edits): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.absolute_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.export_scalepack_unmerged): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.split): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_miller_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clean_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.show_connectivity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_full_command_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.compare_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.polder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_env): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.reflection_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.nonbonded_overlaps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.radial_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.read_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_commands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.apply_tapenade_hints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_date_and_time): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.add_conformations): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.index): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.f000): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.plot_detector_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_dist): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.transfer_crystal_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_host_and_user): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.check_libcpp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.mtrix_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.csv_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.inspect_r_free_flags): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.double_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.precession_view): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.extend_sidechains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.auto_sharpen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.getting_started): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_centers_of_mass): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.model_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.super): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.pdflatex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.euclidean_model_matching): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fab_elbow_angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.massage_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.cdl_lookup): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_tree): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.simple_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validation_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numeric_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_number_of_processors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_residue_in_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.cod_select_and_pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.display_parallax_correction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.insert_write_at_start_of_each_procedure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.hydrogenate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fake_f_obs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/sphinx.build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.compare_datasets): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.afitt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.search_pdb_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.web.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reciprocal_space_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reindex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.water_screen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.quantum_interface): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_registry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdbtools): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_tests): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_cablam_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.dump_as_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.water_b_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.refine_anomalous_substructure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.refresh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.emringer_score): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ssm_rmsd_for_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dano_as_amplitudes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.loggraph): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.depends_on): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remote_processing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.development.ntc_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bash): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.dlsnxs2cbf): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_model_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_tests_parallel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.generate_error_h): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fix_rama_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.extract_code_from_txt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_matching_images): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.eltbx.show_fp_fdp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.plot_anomalous_scattering): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.anneal_real_space): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_ends_with): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_mask_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.mp_spotfinder_server_read_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.select_best_starting_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wxpython): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.insert_scale_records): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.nequal): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.sdb_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.overload): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prepare_pdb_deposition): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.try_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/samosa.join): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.altloc_remediate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.monomer_library.comp_as_motif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.strip_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.distance_difference): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mon_lib_cif_triage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mp_geo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.sort_atoms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.help): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.signal_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_module_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.chunk): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_unzipsfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.qttbx.view_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_systematic_absences): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.grow_density): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.detector_superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.find_distances): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cns_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_box): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_rotarama_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.make_install_HKLviewer_ChimeraX): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_accumulation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.debug_memory): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.distance_least_squares): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.explore_completeness): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prune_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_bin_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.density_modification): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.solver): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sisa): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.probescore_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.explore_metric_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.helix_sheet_recs_as_pdb_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.latex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rigid_bond_test): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.get_pubmed_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_waters): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bootstrap): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_atom_selection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.join_fragment_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numpy_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_process): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_reticular_twin_laws): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.divide_by_zero): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.crystal_symmetry_from_any): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_options): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.flipbase): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.gdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.get_related_ensemble): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.blast_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fest): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/distl.find_active_area): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_as_xyz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_not_show_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fmodel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_structure_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chains_as_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.env_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.saturation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_blobs): cannot parse binary file D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.print_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.remove_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.get_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.install_format): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/fable.fem_include_search_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.poscar_as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_available_slots): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.perigee): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_qstat_counts): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_completion_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage_gui): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_matching_formats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_mac_app): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.segment_and_split_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.masks): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.segmentation_fault): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.dynamics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_H): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.benchmark_refinement): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.build_phil_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phasertng.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.anom_refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.biomt_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.tcsh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_repository_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sort_hetatms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fem): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.afitt_fd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_ext): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/boost.lcm): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_file_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ss_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.analyze_static_disorder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.path_utility): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_pickled_function): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.matthews): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fix_rotamer_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.parallel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_correlation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.epydoc_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.analyze_peptides): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.hierarchy): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/phenix.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_sphinx_html): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.analyse_code_comments): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:101: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 fs:335: package python3-cctbx details = {'requires.txt': {'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.egg-info/requires.txt'}, 'egg-info': {'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.egg-info/PKG-INFO', 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.17.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-cctbx D: dh_python3 pydist:173: trying to find dependency for PIL (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for h5py (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:263: dependency: included in build-deps with limits D: dh_python3 pydist:173: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for mrcfile (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for nxmx (python=None) D: dh_python3 pydist:277: invoking dpkg -S *python3/*/[Nn][Xx][Mm][Xx]-?*.*-info D: dh_python3 pydist:296: dependency: found a result with dpkg -S D: dh_python3 pydist:173: trying to find dependency for orderedset (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pint (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for procrunner (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pymol (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for requests (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for scipy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for six (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for tqdm (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for wxPython (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-requests', 'python3-scipy', 'python3-six', 'python3-numpy', 'python3 (>= 3.12~)', 'python3-wxgtk4.0', 'python3-procrunner', 'python3-pymol', 'python3-nxmx', 'python3-tqdm', 'python3-mrcfile', 'python3 (<< 3.13)', 'python3-pint', 'python3:any', 'python3-matplotlib', 'python3-orderedset', 'python3-pil', 'python3-h5py (>= 3)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/usr/share/lintian/overrides install -p -m0644 debian/python3-cctbx.lintian-overrides debian/python3-cctbx/usr/share/lintian/overrides/python3-cctbx dh_perl -a -O--buildsystem=pybuild rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_link make[1]: Entering directory '/<>' dh_auto_build -- -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" pybuild --build -i python{version} -p 3.12 -s custom "--build-args=dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" I: pybuild base:311: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.12/include rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so rm -f debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.12 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.12/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.12/include make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--buildsystem=pybuild Using 1711907205 as canonical time Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ncbi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ebi_blast.xml.gz using File::StripNondeterminism::handlers::gzip dh_compress -a -O--buildsystem=pybuild cd debian/libcctbx0 cd debian/libcctbx-dev cd debian/python3-cctbx chmod a-x usr/share/doc/python3-cctbx/changelog.Debian chmod a-x usr/share/doc/libcctbx0/changelog.Debian chmod a-x usr/share/doc/libcctbx-dev/changelog.Debian gzip -9nf usr/share/doc/python3-cctbx/changelog.Debian gzip -9nf usr/share/doc/libcctbx0/changelog.Debian gzip -9nf usr/share/doc/libcctbx-dev/changelog.Debian cd '/<>' cd '/<>' cd '/<>' dh_fixperms -a -O--buildsystem=pybuild find debian/libcctbx0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cctbx ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx0/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcctbx-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-cctbx/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cctbx/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cctbx/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cctbx/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/lib/debug/.dwz/riscv64-linux-gnu dwz -mdebian/libcctbx0/usr/lib/debug/.dwz/riscv64-linux-gnu/libcctbx0.debug -M/usr/lib/debug/.dwz/riscv64-linux-gnu/libcctbx0.debug -- debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 install -m0755 -d debian/python3-cctbx/usr/lib/debug/.dwz/riscv64-linux-gnu dwz -mdebian/python3-cctbx/usr/lib/debug/.dwz/riscv64-linux-gnu/python3-cctbx.debug -M/usr/lib/debug/.dwz/riscv64-linux-gnu/python3-cctbx.debug -- debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so objcopy --compress-debug-sections debian/libcctbx0/usr/lib/debug/.dwz/riscv64-linux-gnu/libcctbx0.debug chmod 0644 -- debian/libcctbx0/usr/lib/debug/.dwz/riscv64-linux-gnu/libcctbx0.debug objcopy --compress-debug-sections debian/python3-cctbx/usr/lib/debug/.dwz/riscv64-linux-gnu/python3-cctbx.debug chmod 0644 -- debian/python3-cctbx/usr/lib/debug/.dwz/riscv64-linux-gnu/python3-cctbx.debug dh_strip -a -O--buildsystem=pybuild debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 ef51f780254f301fa8a939d7a5e59e353a7e2d2e install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ef/51f780254f301fa8a939d7a5e59e353a7e2d2e.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ef/51f780254f301fa8a939d7a5e59e353a7e2d2e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripZo_iUT debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 /tmp/Y3_u6SCdpo/stripZo_iUT cat '/tmp/Y3_u6SCdpo/stripZo_iUT' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/stripZo_iUT debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ef/51f780254f301fa8a939d7a5e59e353a7e2d2e.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyhn8G_E chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyhn8G_E cat '/tmp/Y3_u6SCdpo/objcopyhn8G_E' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/objcopyhn8G_E debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ce59d703ffe02f835c7e1af9c916f1a05b0991ff install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ce/59d703ffe02f835c7e1af9c916f1a05b0991ff.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ce/59d703ffe02f835c7e1af9c916f1a05b0991ff.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/striplU7S5i debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 /tmp/Y3_u6SCdpo/striplU7S5i cat '/tmp/Y3_u6SCdpo/striplU7S5i' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/striplU7S5i debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/ce/59d703ffe02f835c7e1af9c916f1a05b0991ff.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyyiRFq5 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyyiRFq5 cat '/tmp/Y3_u6SCdpo/objcopyyiRFq5' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/objcopyyiRFq5 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 b05dfbb2fede1c4fe7b8e13f18e49d93428cd39b install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b0/5dfbb2fede1c4fe7b8e13f18e49d93428cd39b.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b0/5dfbb2fede1c4fe7b8e13f18e49d93428cd39b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/strips9BlB5 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 /tmp/Y3_u6SCdpo/strips9BlB5 cat '/tmp/Y3_u6SCdpo/strips9BlB5' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/strips9BlB5 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b0/5dfbb2fede1c4fe7b8e13f18e49d93428cd39b.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy_pqVEk debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy_pqVEk d439d621d4552e04bf7d58306d78441d4120132d cat '/tmp/Y3_u6SCdpo/objcopy_pqVEk' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1' install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/39d621d4552e04bf7d58306d78441d4120132d.debug chmod --reference /tmp/Y3_u6SCdpo/objcopy_pqVEk debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/39d621d4552e04bf7d58306d78441d4120132d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striplM_Z2p debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striplM_Z2p cat '/tmp/Isyw8pCKMz/striplM_Z2p' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striplM_Z2p debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/39d621d4552e04bf7d58306d78441d4120132d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy1ixo3S chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy1ixo3S c2a1b9d0c8c1c53b13f6df6bbd74e6c436954c34 cat '/tmp/Isyw8pCKMz/objcopy1ixo3S' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy1ixo3S debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2/a1b9d0c8c1c53b13f6df6bbd74e6c436954c34.debug debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 03655e1baddc079e3c4bff97911deac601306510 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/655e1baddc079e3c4bff97911deac601306510.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/655e1baddc079e3c4bff97911deac601306510.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripiQbLji debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripiQbLji cat '/tmp/Isyw8pCKMz/stripiQbLji' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripiQbLji debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/655e1baddc079e3c4bff97911deac601306510.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2TwsY1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2TwsY1 chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2/a1b9d0c8c1c53b13f6df6bbd74e6c436954c34.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripEuE05G debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 cat '/tmp/Isyw8pCKMz/objcopy2TwsY1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy2TwsY1 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 /tmp/Y3_u6SCdpo/stripEuE05G debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/stripEuE05G' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1' debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9b5400272d84ca25ebd59b83228c6716025ec740 chmod --reference /tmp/Y3_u6SCdpo/stripEuE05G debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/5400272d84ca25ebd59b83228c6716025ec740.debug objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c2/a1b9d0c8c1c53b13f6df6bbd74e6c436954c34.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyQ8UVUl chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/5400272d84ca25ebd59b83228c6716025ec740.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripLS0dQw debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyQ8UVUl cat '/tmp/Y3_u6SCdpo/objcopyQ8UVUl' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1' chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripLS0dQw cat '/tmp/Isyw8pCKMz/stripLS0dQw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Y3_u6SCdpo/objcopyQ8UVUl debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/stripLS0dQw debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/5400272d84ca25ebd59b83228c6716025ec740.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylGIYk6 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylGIYk6 8165569c6c5a056c9f1a9b12908088fcf7db4f07 cat '/tmp/Isyw8pCKMz/objcopylGIYk6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so' install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/65569c6c5a056c9f1a9b12908088fcf7db4f07.debug chmod --reference /tmp/Isyw8pCKMz/objcopylGIYk6 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/65569c6c5a056c9f1a9b12908088fcf7db4f07.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/striprWE71R debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 /tmp/Y3_u6SCdpo/striprWE71R cat '/tmp/Y3_u6SCdpo/striprWE71R' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1' debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so chmod --reference /tmp/Y3_u6SCdpo/striprWE71R debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/65569c6c5a056c9f1a9b12908088fcf7db4f07.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy5gPtuT f0ce3d226056a6038332fc86ef95f7731d5ce0d4 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy5gPtuT cat '/tmp/Y3_u6SCdpo/objcopy5gPtuT' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/objcopy5gPtuT debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/ce3d226056a6038332fc86ef95f7731d5ce0d4.debug debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 68e7c23d445bdbe26dad92cfb49583ce7af032ef install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68/e7c23d445bdbe26dad92cfb49583ce7af032ef.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68/e7c23d445bdbe26dad92cfb49583ce7af032ef.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/strip7AnJNe debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/ce3d226056a6038332fc86ef95f7731d5ce0d4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripFrPWlT debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 /tmp/Y3_u6SCdpo/strip7AnJNe cat '/tmp/Y3_u6SCdpo/strip7AnJNe' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/strip7AnJNe debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripFrPWlT objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68/e7c23d445bdbe26dad92cfb49583ce7af032ef.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy3nQe98 cat '/tmp/Isyw8pCKMz/stripFrPWlT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy3nQe98 chmod --reference /tmp/Isyw8pCKMz/stripFrPWlT debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/ce3d226056a6038332fc86ef95f7731d5ce0d4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyxgivar cat '/tmp/Y3_u6SCdpo/objcopy3nQe98' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/objcopy3nQe98 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyxgivar cat '/tmp/Isyw8pCKMz/objcopyxgivar' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyxgivar debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 72a0fdef06d6b2e4d0f1102615151c546d8cc6f3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 d5b56d37978e13496ed46313ab0dd0820940a98a install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72/a0fdef06d6b2e4d0f1102615151c546d8cc6f3.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5/b56d37978e13496ed46313ab0dd0820940a98a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5/b56d37978e13496ed46313ab0dd0820940a98a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip29uKOK debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72/a0fdef06d6b2e4d0f1102615151c546d8cc6f3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripC58fUZ debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 /tmp/Y3_u6SCdpo/stripC58fUZ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip29uKOK cat '/tmp/Y3_u6SCdpo/stripC58fUZ' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1' cat '/tmp/Isyw8pCKMz/strip29uKOK' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Y3_u6SCdpo/stripC58fUZ debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/strip29uKOK debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72/a0fdef06d6b2e4d0f1102615151c546d8cc6f3.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyiK8l_c objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d5/b56d37978e13496ed46313ab0dd0820940a98a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyfCFYab chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyfCFYab chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyiK8l_c cat '/tmp/Y3_u6SCdpo/objcopyiK8l_c' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1' cat '/tmp/Isyw8pCKMz/objcopyfCFYab' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Y3_u6SCdpo/objcopyiK8l_c debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/objcopyfCFYab debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 8132bde40662dbeb35803fa871093eb33e6a10fe debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 15c58a6a9cc82f74912b6dce366172338e460272 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/32bde40662dbeb35803fa871093eb33e6a10fe.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/c58a6a9cc82f74912b6dce366172338e460272.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/32bde40662dbeb35803fa871093eb33e6a10fe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripXPXv7u debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/c58a6a9cc82f74912b6dce366172338e460272.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripTG3VVk debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 /tmp/Y3_u6SCdpo/stripXPXv7u cat '/tmp/Y3_u6SCdpo/stripXPXv7u' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1' chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripTG3VVk chmod --reference /tmp/Y3_u6SCdpo/stripXPXv7u debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 cat '/tmp/Isyw8pCKMz/stripTG3VVk' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so' objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/32bde40662dbeb35803fa871093eb33e6a10fe.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyLC3SSf chmod --reference /tmp/Isyw8pCKMz/stripTG3VVk debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyLC3SSf objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/c58a6a9cc82f74912b6dce366172338e460272.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDDrvUr cat '/tmp/Y3_u6SCdpo/objcopyLC3SSf' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1' chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDDrvUr chmod --reference /tmp/Y3_u6SCdpo/objcopyLC3SSf debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 cat '/tmp/Isyw8pCKMz/objcopyDDrvUr' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyDDrvUr debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 4499729fee6dd7081cca07b77216d3764ffdf3fc debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/44/99729fee6dd7081cca07b77216d3764ffdf3fc.debug debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 f537c28bea89a4515973e122f22f3d2bc7154f6c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/37c28bea89a4515973e122f22f3d2bc7154f6c.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/44/99729fee6dd7081cca07b77216d3764ffdf3fc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripPbyXdj debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 /tmp/Y3_u6SCdpo/stripPbyXdj chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/37c28bea89a4515973e122f22f3d2bc7154f6c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripfTgUTA debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/stripPbyXdj' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/stripPbyXdj debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripfTgUTA objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/44/99729fee6dd7081cca07b77216d3764ffdf3fc.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyP2yMa1 cat '/tmp/Isyw8pCKMz/stripfTgUTA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripfTgUTA debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyP2yMa1 cat '/tmp/Y3_u6SCdpo/objcopyP2yMa1' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1' objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/37c28bea89a4515973e122f22f3d2bc7154f6c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyuIOnny chmod --reference /tmp/Y3_u6SCdpo/objcopyP2yMa1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyuIOnny cat '/tmp/Isyw8pCKMz/objcopyuIOnny' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyuIOnny debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 3c6136a908dcb6d329327614282d57f920d1cacb debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c/6136a908dcb6d329327614282d57f920d1cacb.debug debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 58655d28ac4b0a56078cc872a015d0d1b559965f chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c/6136a908dcb6d329327614282d57f920d1cacb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripRN8qpD debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/655d28ac4b0a56078cc872a015d0d1b559965f.debug chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 /tmp/Y3_u6SCdpo/stripRN8qpD cat '/tmp/Y3_u6SCdpo/stripRN8qpD' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/stripRN8qpD debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/655d28ac4b0a56078cc872a015d0d1b559965f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striphXXb89 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c/6136a908dcb6d329327614282d57f920d1cacb.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyxkMCK5 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striphXXb89 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyxkMCK5 cat '/tmp/Isyw8pCKMz/striphXXb89' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so' cat '/tmp/Y3_u6SCdpo/objcopyxkMCK5' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1' chmod --reference /tmp/Isyw8pCKMz/striphXXb89 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference /tmp/Y3_u6SCdpo/objcopyxkMCK5 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/655d28ac4b0a56078cc872a015d0d1b559965f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyCH476p chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyCH476p debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 cat '/tmp/Isyw8pCKMz/objcopyCH476p' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so' debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 fd2991a342a82f5da0fc05ded4fe3ec82265fcf3 chmod --reference /tmp/Isyw8pCKMz/objcopyCH476p debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fd objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fd/2991a342a82f5da0fc05ded4fe3ec82265fcf3.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fd/2991a342a82f5da0fc05ded4fe3ec82265fcf3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripw3J84R debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 /tmp/Y3_u6SCdpo/stripw3J84R debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/stripw3J84R' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1' debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 361202e90af818d4faf8df771884bf782dba958b chmod --reference /tmp/Y3_u6SCdpo/stripw3J84R debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/1202e90af818d4faf8df771884bf782dba958b.debug objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fd/2991a342a82f5da0fc05ded4fe3ec82265fcf3.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 /tmp/Y3_u6SCdpo/objcopykHHyAa chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 /tmp/Y3_u6SCdpo/objcopykHHyAa chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/1202e90af818d4faf8df771884bf782dba958b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripAURwE2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/objcopykHHyAa' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/objcopykHHyAa debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripAURwE2 cat '/tmp/Isyw8pCKMz/stripAURwE2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so' debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/stripAURwE2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 863d7223590dbf1421bead828d2c62b5b611ed02 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/1202e90af818d4faf8df771884bf782dba958b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTOa9xD install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86/3d7223590dbf1421bead828d2c62b5b611ed02.debug chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTOa9xD cat '/tmp/Isyw8pCKMz/objcopyTOa9xD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so' chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86/3d7223590dbf1421bead828d2c62b5b611ed02.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripsIrfLr debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/objcopyTOa9xD debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 /tmp/Y3_u6SCdpo/stripsIrfLr cat '/tmp/Y3_u6SCdpo/stripsIrfLr' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1' debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so chmod --reference /tmp/Y3_u6SCdpo/stripsIrfLr debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/86/3d7223590dbf1421bead828d2c62b5b611ed02.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 /tmp/Y3_u6SCdpo/objcopycIxyLQ e1f2962ef5409aabfedd6e5b2790ec341314d095 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 /tmp/Y3_u6SCdpo/objcopycIxyLQ install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/f2962ef5409aabfedd6e5b2790ec341314d095.debug cat '/tmp/Y3_u6SCdpo/objcopycIxyLQ' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/objcopycIxyLQ debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/f2962ef5409aabfedd6e5b2790ec341314d095.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripA6img6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 e861ff41f5f8528b5d7d6290aa5cc14d41452222 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e8/61ff41f5f8528b5d7d6290aa5cc14d41452222.debug chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripA6img6 cat '/tmp/Isyw8pCKMz/stripA6img6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so' chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e8/61ff41f5f8528b5d7d6290aa5cc14d41452222.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripcZRvmv debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/stripA6img6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 /tmp/Y3_u6SCdpo/stripcZRvmv objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/f2962ef5409aabfedd6e5b2790ec341314d095.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyWTrT53 cat '/tmp/Y3_u6SCdpo/stripcZRvmv' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1' chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyWTrT53 chmod --reference /tmp/Y3_u6SCdpo/stripcZRvmv debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 cat '/tmp/Isyw8pCKMz/objcopyWTrT53' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so' objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e8/61ff41f5f8528b5d7d6290aa5cc14d41452222.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyHq5NOO chmod --reference /tmp/Isyw8pCKMz/objcopyWTrT53 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyHq5NOO cat '/tmp/Y3_u6SCdpo/objcopyHq5NOO' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1' debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so chmod --reference /tmp/Y3_u6SCdpo/objcopyHq5NOO debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 c7c0f0175889cba48e3dce939e5a72638b16ca21 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/c0f0175889cba48e3dce939e5a72638b16ca21.debug debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8fbb432ce20853cb65bca2828a1a4e73d0ff5932 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8f objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8f/bb432ce20853cb65bca2828a1a4e73d0ff5932.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/c0f0175889cba48e3dce939e5a72638b16ca21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripkE4HaA debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripkE4HaA chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8f/bb432ce20853cb65bca2828a1a4e73d0ff5932.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripqScpm4 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 cat '/tmp/Isyw8pCKMz/stripkE4HaA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 /tmp/Y3_u6SCdpo/stripqScpm4 chmod --reference /tmp/Isyw8pCKMz/stripkE4HaA debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/stripqScpm4' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1' objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/c0f0175889cba48e3dce939e5a72638b16ca21.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopysmrUHd chmod --reference /tmp/Y3_u6SCdpo/stripqScpm4 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopysmrUHd objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8f/bb432ce20853cb65bca2828a1a4e73d0ff5932.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyMH74fc cat '/tmp/Isyw8pCKMz/objcopysmrUHd' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyMH74fc chmod --reference /tmp/Isyw8pCKMz/objcopysmrUHd debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/objcopyMH74fc' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/objcopyMH74fc debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 a93c43b7ad6bbbe2e1a6f587a6f15343a04a0762 cc10bb88a2f33b9dbd2e37220f1b6ac596200334 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a9/3c43b7ad6bbbe2e1a6f587a6f15343a04a0762.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a9/3c43b7ad6bbbe2e1a6f587a6f15343a04a0762.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripQqhrzr debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/10bb88a2f33b9dbd2e37220f1b6ac596200334.debug chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 /tmp/Y3_u6SCdpo/stripQqhrzr cat '/tmp/Y3_u6SCdpo/stripQqhrzr' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/stripQqhrzr debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a9/3c43b7ad6bbbe2e1a6f587a6f15343a04a0762.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy4uePum chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 /tmp/Y3_u6SCdpo/objcopy4uePum cat '/tmp/Y3_u6SCdpo/objcopy4uePum' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1' chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/10bb88a2f33b9dbd2e37220f1b6ac596200334.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripvCaLel debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so chmod --reference /tmp/Y3_u6SCdpo/objcopy4uePum debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripvCaLel debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 3b91bb041af712f69ec5f750a8a9e91f163649a6 cat '/tmp/Isyw8pCKMz/stripvCaLel' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripvCaLel debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b/91bb041af712f69ec5f750a8a9e91f163649a6.debug objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/10bb88a2f33b9dbd2e37220f1b6ac596200334.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyyeZsXJ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyyeZsXJ cat '/tmp/Isyw8pCKMz/objcopyyeZsXJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so' chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b/91bb041af712f69ec5f750a8a9e91f163649a6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripmTgHMN debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/objcopyyeZsXJ debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 /tmp/Y3_u6SCdpo/stripmTgHMN cat '/tmp/Y3_u6SCdpo/stripmTgHMN' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/stripmTgHMN debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b/91bb041af712f69ec5f750a8a9e91f163649a6.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyCRlELI debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 19523fbbebb7fa4e0be4e614fbae91ba8d3c1a96 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyCRlELI cat '/tmp/Y3_u6SCdpo/objcopyCRlELI' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1' install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/523fbbebb7fa4e0be4e614fbae91ba8d3c1a96.debug chmod --reference /tmp/Y3_u6SCdpo/objcopyCRlELI debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/523fbbebb7fa4e0be4e614fbae91ba8d3c1a96.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip7FhFU7 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 81a1f14027155de255abca459275ca33832a1ee4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip7FhFU7 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/a1f14027155de255abca459275ca33832a1ee4.debug cat '/tmp/Isyw8pCKMz/strip7FhFU7' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip7FhFU7 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/523fbbebb7fa4e0be4e614fbae91ba8d3c1a96.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8CnuJe chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/a1f14027155de255abca459275ca33832a1ee4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/strippxKmug debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8CnuJe chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 /tmp/Y3_u6SCdpo/strippxKmug cat '/tmp/Isyw8pCKMz/objcopy8CnuJe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so' cat '/tmp/Y3_u6SCdpo/strippxKmug' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1' chmod --reference /tmp/Isyw8pCKMz/objcopy8CnuJe debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so chmod --reference /tmp/Y3_u6SCdpo/strippxKmug debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/81/a1f14027155de255abca459275ca33832a1ee4.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 /tmp/Y3_u6SCdpo/objcopysnCNlb chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 /tmp/Y3_u6SCdpo/objcopysnCNlb debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/objcopysnCNlb' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1' debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9cf52ff98e7dfaee1298aecc1224a59a20e3729a chmod --reference /tmp/Y3_u6SCdpo/objcopysnCNlb debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/f52ff98e7dfaee1298aecc1224a59a20e3729a.debug debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/f52ff98e7dfaee1298aecc1224a59a20e3729a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripkttbE8 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripkttbE8 cat '/tmp/Isyw8pCKMz/stripkttbE8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripkttbE8 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so 859da5b4ebf91636924374ce01032406993f5a11 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/f52ff98e7dfaee1298aecc1224a59a20e3729a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyKt32Z1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyKt32Z1 cat '/tmp/Isyw8pCKMz/objcopyKt32Z1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so' install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/9da5b4ebf91636924374ce01032406993f5a11.debug chmod --reference /tmp/Isyw8pCKMz/objcopyKt32Z1 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 2eadc3cdff784d53bf86cf93aa0a3e209cd06fc4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/adc3cdff784d53bf86cf93aa0a3e209cd06fc4.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/9da5b4ebf91636924374ce01032406993f5a11.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripNDf8sH debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 /tmp/Y3_u6SCdpo/stripNDf8sH chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/adc3cdff784d53bf86cf93aa0a3e209cd06fc4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripmAy_W6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/stripNDf8sH' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/stripNDf8sH debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripmAy_W6 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/9da5b4ebf91636924374ce01032406993f5a11.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 /tmp/Y3_u6SCdpo/objcopynqKkEN cat '/tmp/Isyw8pCKMz/stripmAy_W6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripmAy_W6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/adc3cdff784d53bf86cf93aa0a3e209cd06fc4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyD35RZN chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 /tmp/Y3_u6SCdpo/objcopynqKkEN chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyD35RZN cat '/tmp/Y3_u6SCdpo/objcopynqKkEN' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1' cat '/tmp/Isyw8pCKMz/objcopyD35RZN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Y3_u6SCdpo/objcopynqKkEN debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 chmod --reference /tmp/Isyw8pCKMz/objcopyD35RZN debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a4f961f68a2c76912e63301ba5adce5b67ca78e3 debugedit --build-id --build-id-seed=libcctbx0/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/f961f68a2c76912e63301ba5adce5b67ca78e3.debug debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/f961f68a2c76912e63301ba5adce5b67ca78e3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripeB8bHe debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so f19346e2185afbe9249e6d0f0c45d95c3c0d57e7 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripeB8bHe cat '/tmp/Isyw8pCKMz/stripeB8bHe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripeB8bHe debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/f961f68a2c76912e63301ba5adce5b67ca78e3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyM3c18L chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyM3c18L install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1/9346e2185afbe9249e6d0f0c45d95c3c0d57e7.debug cat '/tmp/Isyw8pCKMz/objcopyM3c18L' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyM3c18L debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 cba50cd3dadebcae974f0ac32700f299684f8663 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/a50cd3dadebcae974f0ac32700f299684f8663.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/a50cd3dadebcae974f0ac32700f299684f8663.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripsNQR4x debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripsNQR4x cat '/tmp/Isyw8pCKMz/stripsNQR4x' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripsNQR4x debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/a50cd3dadebcae974f0ac32700f299684f8663.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyHQVuiC chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1/9346e2185afbe9249e6d0f0c45d95c3c0d57e7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Y3_u6SCdpo/stripq59YCr debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyHQVuiC cat '/tmp/Isyw8pCKMz/objcopyHQVuiC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 /tmp/Y3_u6SCdpo/stripq59YCr chmod --reference /tmp/Isyw8pCKMz/objcopyHQVuiC debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so cat '/tmp/Y3_u6SCdpo/stripq59YCr' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1' chmod --reference /tmp/Y3_u6SCdpo/stripq59YCr debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1/9346e2185afbe9249e6d0f0c45d95c3c0d57e7.debug debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyEp7BZQ debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 chmod --reference debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 /tmp/Y3_u6SCdpo/objcopyEp7BZQ cat '/tmp/Y3_u6SCdpo/objcopyEp7BZQ' > 'debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1' 1fbb9880050c4351011e2a857e0149a0507a1bb3 chmod --reference /tmp/Y3_u6SCdpo/objcopyEp7BZQ debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libcctbx0/usr/lib/debug/.dwz/riscv64-linux-gnu debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/bb9880050c4351011e2a857e0149a0507a1bb3.debug rm -fr debian/libcctbx0/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libcctbx0/usr/lib/debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc ln -s libcctbx0 debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc/libcctbx0-dbgsym install -m0755 -d debian/.debhelper/libcctbx0 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/bb9880050c4351011e2a857e0149a0507a1bb3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripNxVYTa debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripNxVYTa cat '/tmp/Isyw8pCKMz/stripNxVYTa' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripNxVYTa debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/bb9880050c4351011e2a857e0149a0507a1bb3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylF0KB1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylF0KB1 cat '/tmp/Isyw8pCKMz/objcopylF0KB1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopylF0KB1 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4c7ba5ac049a70ae748ca41c38f0de38b831341b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/7ba5ac049a70ae748ca41c38f0de38b831341b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/7ba5ac049a70ae748ca41c38f0de38b831341b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip7RYVze debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip7RYVze cat '/tmp/Isyw8pCKMz/strip7RYVze' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip7RYVze debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/7ba5ac049a70ae748ca41c38f0de38b831341b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrbjnKo chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrbjnKo cat '/tmp/Isyw8pCKMz/objcopyrbjnKo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyrbjnKo debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2621712bfa674e539bb83db3020a285985d884d9 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/21712bfa674e539bb83db3020a285985d884d9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/21712bfa674e539bb83db3020a285985d884d9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripABbd_J debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripABbd_J cat '/tmp/Isyw8pCKMz/stripABbd_J' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripABbd_J debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/21712bfa674e539bb83db3020a285985d884d9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy5Nl8d4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy5Nl8d4 cat '/tmp/Isyw8pCKMz/objcopy5Nl8d4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy5Nl8d4 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 17b5bcb479875c812f5f5389c4aa2671e294a196 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/b5bcb479875c812f5f5389c4aa2671e294a196.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/b5bcb479875c812f5f5389c4aa2671e294a196.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripHTV79r debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripHTV79r cat '/tmp/Isyw8pCKMz/stripHTV79r' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripHTV79r debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/b5bcb479875c812f5f5389c4aa2671e294a196.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyhmi626 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyhmi626 cat '/tmp/Isyw8pCKMz/objcopyhmi626' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyhmi626 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9b89e8b656609251142a2ba4b0d33a7acdf8eea9 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/89e8b656609251142a2ba4b0d33a7acdf8eea9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/89e8b656609251142a2ba4b0d33a7acdf8eea9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripA1nEMe debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripA1nEMe cat '/tmp/Isyw8pCKMz/stripA1nEMe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripA1nEMe debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/89e8b656609251142a2ba4b0d33a7acdf8eea9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy7k0fb6 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy7k0fb6 cat '/tmp/Isyw8pCKMz/objcopy7k0fb6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy7k0fb6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 28d0da044d6c25f5a20fd51c78aa0f2ac4cfe57e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/d0da044d6c25f5a20fd51c78aa0f2ac4cfe57e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/d0da044d6c25f5a20fd51c78aa0f2ac4cfe57e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripDLvnAe debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripDLvnAe cat '/tmp/Isyw8pCKMz/stripDLvnAe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripDLvnAe debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/d0da044d6c25f5a20fd51c78aa0f2ac4cfe57e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjnjItp chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjnjItp cat '/tmp/Isyw8pCKMz/objcopyjnjItp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyjnjItp debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 47fe0711ea44bafb12df64d1cb1b2d85e3eae41c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/fe0711ea44bafb12df64d1cb1b2d85e3eae41c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/fe0711ea44bafb12df64d1cb1b2d85e3eae41c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripIpQSgQ debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripIpQSgQ cat '/tmp/Isyw8pCKMz/stripIpQSgQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripIpQSgQ debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/fe0711ea44bafb12df64d1cb1b2d85e3eae41c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDz4cEY chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDz4cEY cat '/tmp/Isyw8pCKMz/objcopyDz4cEY' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyDz4cEY debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e17ab1268ffb94931110d899da0f1b33f542f039 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/7ab1268ffb94931110d899da0f1b33f542f039.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/7ab1268ffb94931110d899da0f1b33f542f039.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stript_jQzF debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stript_jQzF cat '/tmp/Isyw8pCKMz/stript_jQzF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stript_jQzF debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/7ab1268ffb94931110d899da0f1b33f542f039.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy6lACc0 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy6lACc0 cat '/tmp/Isyw8pCKMz/objcopy6lACc0' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy6lACc0 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4daf0ef89296ca19917a12f42760a4ba77c093db install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/af0ef89296ca19917a12f42760a4ba77c093db.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/af0ef89296ca19917a12f42760a4ba77c093db.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip1VG9ga debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip1VG9ga cat '/tmp/Isyw8pCKMz/strip1VG9ga' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip1VG9ga debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/af0ef89296ca19917a12f42760a4ba77c093db.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMZ1kHL chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMZ1kHL cat '/tmp/Isyw8pCKMz/objcopyMZ1kHL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyMZ1kHL debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 87be45cca3b2d6a08e83b09f95f0e9cfe12c2e14 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/be45cca3b2d6a08e83b09f95f0e9cfe12c2e14.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/be45cca3b2d6a08e83b09f95f0e9cfe12c2e14.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripSlJUkG debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripSlJUkG cat '/tmp/Isyw8pCKMz/stripSlJUkG' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripSlJUkG debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/be45cca3b2d6a08e83b09f95f0e9cfe12c2e14.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXZL6Lm chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXZL6Lm cat '/tmp/Isyw8pCKMz/objcopyXZL6Lm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyXZL6Lm debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ee12aae7cb0a3f8e3ea9076ac5c4a01af5f49c21 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee/12aae7cb0a3f8e3ea9076ac5c4a01af5f49c21.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee/12aae7cb0a3f8e3ea9076ac5c4a01af5f49c21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip48ECTf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip48ECTf cat '/tmp/Isyw8pCKMz/strip48ECTf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip48ECTf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee/12aae7cb0a3f8e3ea9076ac5c4a01af5f49c21.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDDOBE4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDDOBE4 cat '/tmp/Isyw8pCKMz/objcopyDDOBE4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyDDOBE4 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 406709572a54c50e43ea7644f45e42b557b66dbb install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/6709572a54c50e43ea7644f45e42b557b66dbb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/6709572a54c50e43ea7644f45e42b557b66dbb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strippaTgQc debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strippaTgQc cat '/tmp/Isyw8pCKMz/strippaTgQc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strippaTgQc debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/6709572a54c50e43ea7644f45e42b557b66dbb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyKQA1PW chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyKQA1PW cat '/tmp/Isyw8pCKMz/objcopyKQA1PW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyKQA1PW debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 248e1c8ea32a603b2a99387c4737bebb78f4697d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/8e1c8ea32a603b2a99387c4737bebb78f4697d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/8e1c8ea32a603b2a99387c4737bebb78f4697d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip9STg8G debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip9STg8G cat '/tmp/Isyw8pCKMz/strip9STg8G' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip9STg8G debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/8e1c8ea32a603b2a99387c4737bebb78f4697d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyv54VdS chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyv54VdS cat '/tmp/Isyw8pCKMz/objcopyv54VdS' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyv54VdS debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0c66618a82bafda33c20e78fd62a5c839f8d1097 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/66618a82bafda33c20e78fd62a5c839f8d1097.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/66618a82bafda33c20e78fd62a5c839f8d1097.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripwM_DMy debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripwM_DMy cat '/tmp/Isyw8pCKMz/stripwM_DMy' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripwM_DMy debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/66618a82bafda33c20e78fd62a5c839f8d1097.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIHm0qS chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIHm0qS cat '/tmp/Isyw8pCKMz/objcopyIHm0qS' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyIHm0qS debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9e2ec35d400bd72933132884ef8e86c599d8f98d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/2ec35d400bd72933132884ef8e86c599d8f98d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/2ec35d400bd72933132884ef8e86c599d8f98d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripOagAKN debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripOagAKN cat '/tmp/Isyw8pCKMz/stripOagAKN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripOagAKN debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/2ec35d400bd72933132884ef8e86c599d8f98d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyc1PZ4O chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyc1PZ4O cat '/tmp/Isyw8pCKMz/objcopyc1PZ4O' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyc1PZ4O debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5e707ff8cb685ea6c47d7f547e8ba21f3b9395e2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/707ff8cb685ea6c47d7f547e8ba21f3b9395e2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/707ff8cb685ea6c47d7f547e8ba21f3b9395e2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striphSGzIO debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striphSGzIO cat '/tmp/Isyw8pCKMz/striphSGzIO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striphSGzIO debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/707ff8cb685ea6c47d7f547e8ba21f3b9395e2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyVsJhVO chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyVsJhVO cat '/tmp/Isyw8pCKMz/objcopyVsJhVO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyVsJhVO debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 323d83f1cf3d5f40830648e5dc287ee168132c47 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/3d83f1cf3d5f40830648e5dc287ee168132c47.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/3d83f1cf3d5f40830648e5dc287ee168132c47.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip2Bqb8G debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip2Bqb8G cat '/tmp/Isyw8pCKMz/strip2Bqb8G' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip2Bqb8G debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/3d83f1cf3d5f40830648e5dc287ee168132c47.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyBHGrSf chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyBHGrSf cat '/tmp/Isyw8pCKMz/objcopyBHGrSf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyBHGrSf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 4cc958f8ab6be72eb6a2458ccee9072ee2ed3e2e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/c958f8ab6be72eb6a2458ccee9072ee2ed3e2e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/c958f8ab6be72eb6a2458ccee9072ee2ed3e2e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripoUvoNO debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripoUvoNO cat '/tmp/Isyw8pCKMz/stripoUvoNO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripoUvoNO debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/c958f8ab6be72eb6a2458ccee9072ee2ed3e2e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_bLCcp chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_bLCcp cat '/tmp/Isyw8pCKMz/objcopy_bLCcp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy_bLCcp debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 b7bb4ab9f39f58bd482f8d4a7568b6262bf1c77e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/bb4ab9f39f58bd482f8d4a7568b6262bf1c77e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/bb4ab9f39f58bd482f8d4a7568b6262bf1c77e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripzuJlOZ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripzuJlOZ cat '/tmp/Isyw8pCKMz/stripzuJlOZ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripzuJlOZ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/bb4ab9f39f58bd482f8d4a7568b6262bf1c77e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrWwDuB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrWwDuB cat '/tmp/Isyw8pCKMz/objcopyrWwDuB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyrWwDuB debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5160c9692724bc971889d7f9e803cb6911b22bc9 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/60c9692724bc971889d7f9e803cb6911b22bc9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/60c9692724bc971889d7f9e803cb6911b22bc9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripRynPTO debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripRynPTO cat '/tmp/Isyw8pCKMz/stripRynPTO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripRynPTO debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/60c9692724bc971889d7f9e803cb6911b22bc9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyold4xO chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyold4xO cat '/tmp/Isyw8pCKMz/objcopyold4xO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyold4xO debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 fc6e9d4d8800bac70c833e71a98d8f3ea9d84afc install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/6e9d4d8800bac70c833e71a98d8f3ea9d84afc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/6e9d4d8800bac70c833e71a98d8f3ea9d84afc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripdZakE4 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripdZakE4 cat '/tmp/Isyw8pCKMz/stripdZakE4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripdZakE4 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/6e9d4d8800bac70c833e71a98d8f3ea9d84afc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjAlHW1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjAlHW1 cat '/tmp/Isyw8pCKMz/objcopyjAlHW1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyjAlHW1 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 7b986ad644ef3d738905c24905aefb3081e91d73 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/986ad644ef3d738905c24905aefb3081e91d73.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/986ad644ef3d738905c24905aefb3081e91d73.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip3zlgOP debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip3zlgOP cat '/tmp/Isyw8pCKMz/strip3zlgOP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip3zlgOP debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/986ad644ef3d738905c24905aefb3081e91d73.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzv71yF chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzv71yF cat '/tmp/Isyw8pCKMz/objcopyzv71yF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyzv71yF debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 27ca9eb8b4a98bbb8fd1efb580b7d25088af2d64 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/ca9eb8b4a98bbb8fd1efb580b7d25088af2d64.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/ca9eb8b4a98bbb8fd1efb580b7d25088af2d64.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striphjuR2H debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striphjuR2H cat '/tmp/Isyw8pCKMz/striphjuR2H' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striphjuR2H debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/ca9eb8b4a98bbb8fd1efb580b7d25088af2d64.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTCcL5c chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTCcL5c cat '/tmp/Isyw8pCKMz/objcopyTCcL5c' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyTCcL5c debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 8ed363bc5de9577bab49626efc9babce3db9f19c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/d363bc5de9577bab49626efc9babce3db9f19c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/d363bc5de9577bab49626efc9babce3db9f19c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripWk_q_j debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripWk_q_j cat '/tmp/Isyw8pCKMz/stripWk_q_j' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripWk_q_j debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/d363bc5de9577bab49626efc9babce3db9f19c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyfTyIry chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyfTyIry cat '/tmp/Isyw8pCKMz/objcopyfTyIry' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyfTyIry debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ae4e1a554dfed639f9544c4af798002d36e2b441 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/4e1a554dfed639f9544c4af798002d36e2b441.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/4e1a554dfed639f9544c4af798002d36e2b441.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripCkmaGw debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripCkmaGw cat '/tmp/Isyw8pCKMz/stripCkmaGw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripCkmaGw debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ae/4e1a554dfed639f9544c4af798002d36e2b441.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrN6Zt_ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrN6Zt_ cat '/tmp/Isyw8pCKMz/objcopyrN6Zt_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyrN6Zt_ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5b175529939a32bc5fdd953033f1214b58b06037 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/175529939a32bc5fdd953033f1214b58b06037.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/175529939a32bc5fdd953033f1214b58b06037.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripPOskU8 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripPOskU8 cat '/tmp/Isyw8pCKMz/stripPOskU8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripPOskU8 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5b/175529939a32bc5fdd953033f1214b58b06037.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyc3qfQ3 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyc3qfQ3 cat '/tmp/Isyw8pCKMz/objcopyc3qfQ3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyc3qfQ3 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 6fab4cf99ebf943613168fa43008ed7597c88f85 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/ab4cf99ebf943613168fa43008ed7597c88f85.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/ab4cf99ebf943613168fa43008ed7597c88f85.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip3xfJJN debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip3xfJJN cat '/tmp/Isyw8pCKMz/strip3xfJJN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip3xfJJN debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/ab4cf99ebf943613168fa43008ed7597c88f85.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIH4YlI chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIH4YlI cat '/tmp/Isyw8pCKMz/objcopyIH4YlI' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyIH4YlI debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 e5c85ebd858cd7c1554e34195c9dbf725a836261 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/c85ebd858cd7c1554e34195c9dbf725a836261.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/c85ebd858cd7c1554e34195c9dbf725a836261.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripRmLrre debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripRmLrre cat '/tmp/Isyw8pCKMz/stripRmLrre' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripRmLrre debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/c85ebd858cd7c1554e34195c9dbf725a836261.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2WPBCG chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2WPBCG cat '/tmp/Isyw8pCKMz/objcopy2WPBCG' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy2WPBCG debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5a3b96b898cb92ed4409f413bd6e580d8b927868 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/3b96b898cb92ed4409f413bd6e580d8b927868.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/3b96b898cb92ed4409f413bd6e580d8b927868.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip2Sj9bQ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip2Sj9bQ cat '/tmp/Isyw8pCKMz/strip2Sj9bQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip2Sj9bQ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/3b96b898cb92ed4409f413bd6e580d8b927868.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy823HY_ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy823HY_ cat '/tmp/Isyw8pCKMz/objcopy823HY_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy823HY_ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a83543a397bb7e6752dbb1f720c831680ff52f21 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/3543a397bb7e6752dbb1f720c831680ff52f21.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/3543a397bb7e6752dbb1f720c831680ff52f21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip9W_vcp debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip9W_vcp cat '/tmp/Isyw8pCKMz/strip9W_vcp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip9W_vcp debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/3543a397bb7e6752dbb1f720c831680ff52f21.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyngIDLN chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyngIDLN cat '/tmp/Isyw8pCKMz/objcopyngIDLN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyngIDLN debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 3ce8c415fdff27d0f51b1951b4b7ee3382791f4c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/e8c415fdff27d0f51b1951b4b7ee3382791f4c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/e8c415fdff27d0f51b1951b4b7ee3382791f4c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striptCiu3i debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striptCiu3i cat '/tmp/Isyw8pCKMz/striptCiu3i' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striptCiu3i debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c/e8c415fdff27d0f51b1951b4b7ee3382791f4c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTG4r3b chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTG4r3b cat '/tmp/Isyw8pCKMz/objcopyTG4r3b' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyTG4r3b debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9f22679df1fb3a0558c5bd315d622aeb1b64fa03 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/22679df1fb3a0558c5bd315d622aeb1b64fa03.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/22679df1fb3a0558c5bd315d622aeb1b64fa03.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip0d2s6o debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip0d2s6o cat '/tmp/Isyw8pCKMz/strip0d2s6o' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip0d2s6o debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/22679df1fb3a0558c5bd315d622aeb1b64fa03.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyCGW13A chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyCGW13A cat '/tmp/Isyw8pCKMz/objcopyCGW13A' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyCGW13A debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 1b2a2b5bc5ece72afe880ff4cf02047e88a4e778 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/2a2b5bc5ece72afe880ff4cf02047e88a4e778.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/2a2b5bc5ece72afe880ff4cf02047e88a4e778.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip4ZMKDQ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip4ZMKDQ cat '/tmp/Isyw8pCKMz/strip4ZMKDQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip4ZMKDQ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/2a2b5bc5ece72afe880ff4cf02047e88a4e778.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2msmYJ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2msmYJ cat '/tmp/Isyw8pCKMz/objcopy2msmYJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy2msmYJ debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 a59bdb3439860b0f6e1385ceef713d2a4123f155 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a5/9bdb3439860b0f6e1385ceef713d2a4123f155.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a5/9bdb3439860b0f6e1385ceef713d2a4123f155.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striptoIZCr debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striptoIZCr cat '/tmp/Isyw8pCKMz/striptoIZCr' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striptoIZCr debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a5/9bdb3439860b0f6e1385ceef713d2a4123f155.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyvOYkAn chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyvOYkAn cat '/tmp/Isyw8pCKMz/objcopyvOYkAn' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyvOYkAn debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e543adf3dd85843c39731bad61f3b77c577acadc install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/43adf3dd85843c39731bad61f3b77c577acadc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/43adf3dd85843c39731bad61f3b77c577acadc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripdueMbm debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripdueMbm cat '/tmp/Isyw8pCKMz/stripdueMbm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripdueMbm debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/43adf3dd85843c39731bad61f3b77c577acadc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZsOt2y chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZsOt2y cat '/tmp/Isyw8pCKMz/objcopyZsOt2y' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyZsOt2y debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 0334586911a4ff134b569f121336d9dd09f2e42c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/34586911a4ff134b569f121336d9dd09f2e42c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/34586911a4ff134b569f121336d9dd09f2e42c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripsoWIQf debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripsoWIQf cat '/tmp/Isyw8pCKMz/stripsoWIQf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripsoWIQf debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/34586911a4ff134b569f121336d9dd09f2e42c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyPM_qmB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyPM_qmB cat '/tmp/Isyw8pCKMz/objcopyPM_qmB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyPM_qmB debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 7a356f9e15d21e72a398a8d193d823aebb19edae install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/356f9e15d21e72a398a8d193d823aebb19edae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/356f9e15d21e72a398a8d193d823aebb19edae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip15JXVE debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip15JXVE cat '/tmp/Isyw8pCKMz/strip15JXVE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip15JXVE debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/356f9e15d21e72a398a8d193d823aebb19edae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopykWFhJZ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopykWFhJZ cat '/tmp/Isyw8pCKMz/objcopykWFhJZ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopykWFhJZ debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 85dc4c4866d9910a6abfc11dde98735d52caee66 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/dc4c4866d9910a6abfc11dde98735d52caee66.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/dc4c4866d9910a6abfc11dde98735d52caee66.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripRODvKz debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripRODvKz cat '/tmp/Isyw8pCKMz/stripRODvKz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripRODvKz debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/dc4c4866d9910a6abfc11dde98735d52caee66.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXvalcC chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXvalcC cat '/tmp/Isyw8pCKMz/objcopyXvalcC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyXvalcC debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8d17d8fe65bf31c35b47567b3aabfedce9528da5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/17d8fe65bf31c35b47567b3aabfedce9528da5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/17d8fe65bf31c35b47567b3aabfedce9528da5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripeegJAJ debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripeegJAJ cat '/tmp/Isyw8pCKMz/stripeegJAJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripeegJAJ debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/17d8fe65bf31c35b47567b3aabfedce9528da5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyxnPYfM chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyxnPYfM cat '/tmp/Isyw8pCKMz/objcopyxnPYfM' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyxnPYfM debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 78862c4d8609ce707c48c90c21ebdff5aaa68ed6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/862c4d8609ce707c48c90c21ebdff5aaa68ed6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/862c4d8609ce707c48c90c21ebdff5aaa68ed6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripjhAEyD debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripjhAEyD cat '/tmp/Isyw8pCKMz/stripjhAEyD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripjhAEyD debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/862c4d8609ce707c48c90c21ebdff5aaa68ed6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyu5SPyb chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyu5SPyb cat '/tmp/Isyw8pCKMz/objcopyu5SPyb' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyu5SPyb debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a6fb64ab99ae9ce0e72da088a4ef8be8a7abaebf install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/fb64ab99ae9ce0e72da088a4ef8be8a7abaebf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/fb64ab99ae9ce0e72da088a4ef8be8a7abaebf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripeywGpK debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripeywGpK cat '/tmp/Isyw8pCKMz/stripeywGpK' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripeywGpK debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/fb64ab99ae9ce0e72da088a4ef8be8a7abaebf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopysAjQCK chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopysAjQCK cat '/tmp/Isyw8pCKMz/objcopysAjQCK' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopysAjQCK debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a60500692f791b50202679fa32aea9af97994931 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/0500692f791b50202679fa32aea9af97994931.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/0500692f791b50202679fa32aea9af97994931.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripUmFzZs debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripUmFzZs cat '/tmp/Isyw8pCKMz/stripUmFzZs' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripUmFzZs debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/0500692f791b50202679fa32aea9af97994931.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy3nQKwd chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy3nQKwd cat '/tmp/Isyw8pCKMz/objcopy3nQKwd' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy3nQKwd debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 523529a935bf7b45c57f8f1ba463eb0e0f1596c0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/3529a935bf7b45c57f8f1ba463eb0e0f1596c0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/3529a935bf7b45c57f8f1ba463eb0e0f1596c0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripcEBl5t debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripcEBl5t cat '/tmp/Isyw8pCKMz/stripcEBl5t' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripcEBl5t debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52/3529a935bf7b45c57f8f1ba463eb0e0f1596c0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyF4RaYM chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyF4RaYM cat '/tmp/Isyw8pCKMz/objcopyF4RaYM' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyF4RaYM debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4ac9e96c9685cfd75677e16138e707b5772d31ab install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/c9e96c9685cfd75677e16138e707b5772d31ab.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/c9e96c9685cfd75677e16138e707b5772d31ab.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripPei50C debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripPei50C cat '/tmp/Isyw8pCKMz/stripPei50C' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripPei50C debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/c9e96c9685cfd75677e16138e707b5772d31ab.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyenSNb3 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyenSNb3 cat '/tmp/Isyw8pCKMz/objcopyenSNb3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyenSNb3 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 87e7428827b06b224a84a640d829aa1ecb782e8d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/e7428827b06b224a84a640d829aa1ecb782e8d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/e7428827b06b224a84a640d829aa1ecb782e8d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip5mM4TT debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip5mM4TT cat '/tmp/Isyw8pCKMz/strip5mM4TT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip5mM4TT debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/e7428827b06b224a84a640d829aa1ecb782e8d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyYREkNa chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyYREkNa cat '/tmp/Isyw8pCKMz/objcopyYREkNa' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyYREkNa debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 3ec0fd52677a5aeb6da327d1b065533f378d994b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/c0fd52677a5aeb6da327d1b065533f378d994b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/c0fd52677a5aeb6da327d1b065533f378d994b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripiAqXfc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripiAqXfc cat '/tmp/Isyw8pCKMz/stripiAqXfc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripiAqXfc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/c0fd52677a5aeb6da327d1b065533f378d994b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrzrTuW chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrzrTuW cat '/tmp/Isyw8pCKMz/objcopyrzrTuW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyrzrTuW debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 c5745bec5e2ab9e819969e8d18a374e8bda6a337 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/745bec5e2ab9e819969e8d18a374e8bda6a337.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/745bec5e2ab9e819969e8d18a374e8bda6a337.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip09YnRv debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip09YnRv cat '/tmp/Isyw8pCKMz/strip09YnRv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip09YnRv debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/745bec5e2ab9e819969e8d18a374e8bda6a337.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyekaTmW chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyekaTmW cat '/tmp/Isyw8pCKMz/objcopyekaTmW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyekaTmW debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 106501774fe0addde02377e4f5a09c55b9ff29ae install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/6501774fe0addde02377e4f5a09c55b9ff29ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/6501774fe0addde02377e4f5a09c55b9ff29ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripLFE9TR debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripLFE9TR cat '/tmp/Isyw8pCKMz/stripLFE9TR' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripLFE9TR debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/6501774fe0addde02377e4f5a09c55b9ff29ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyU3tFuc chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyU3tFuc cat '/tmp/Isyw8pCKMz/objcopyU3tFuc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyU3tFuc debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 01c85c11302064685cfce8a8dd3eb65453909099 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/c85c11302064685cfce8a8dd3eb65453909099.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/c85c11302064685cfce8a8dd3eb65453909099.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripZOCoOT debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripZOCoOT cat '/tmp/Isyw8pCKMz/stripZOCoOT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripZOCoOT debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/c85c11302064685cfce8a8dd3eb65453909099.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_g2uXi chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_g2uXi cat '/tmp/Isyw8pCKMz/objcopy_g2uXi' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy_g2uXi debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 78e0f07d5b71f66741bb3d06ad5fda86d2bd7c61 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/e0f07d5b71f66741bb3d06ad5fda86d2bd7c61.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/e0f07d5b71f66741bb3d06ad5fda86d2bd7c61.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripPQNPcO debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripPQNPcO cat '/tmp/Isyw8pCKMz/stripPQNPcO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripPQNPcO debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/e0f07d5b71f66741bb3d06ad5fda86d2bd7c61.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyBvxXu8 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyBvxXu8 cat '/tmp/Isyw8pCKMz/objcopyBvxXu8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyBvxXu8 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a92fdca5171b9bf5f417591719912e1a402a96c9 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/2fdca5171b9bf5f417591719912e1a402a96c9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/2fdca5171b9bf5f417591719912e1a402a96c9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striprYGJ1v debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striprYGJ1v cat '/tmp/Isyw8pCKMz/striprYGJ1v' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striprYGJ1v debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/2fdca5171b9bf5f417591719912e1a402a96c9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2QWsed chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2QWsed cat '/tmp/Isyw8pCKMz/objcopy2QWsed' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy2QWsed debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 bdcfaab84b0c6d12905527b4374f08e9463b841b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/cfaab84b0c6d12905527b4374f08e9463b841b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/cfaab84b0c6d12905527b4374f08e9463b841b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripEXz2e0 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripEXz2e0 cat '/tmp/Isyw8pCKMz/stripEXz2e0' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripEXz2e0 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/cfaab84b0c6d12905527b4374f08e9463b841b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyYyQJ71 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyYyQJ71 cat '/tmp/Isyw8pCKMz/objcopyYyQJ71' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyYyQJ71 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 c16614c7efdb009cb6a423e8d1cef9bc2e161c38 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1/6614c7efdb009cb6a423e8d1cef9bc2e161c38.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1/6614c7efdb009cb6a423e8d1cef9bc2e161c38.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip1ozfot debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip1ozfot cat '/tmp/Isyw8pCKMz/strip1ozfot' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip1ozfot debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c1/6614c7efdb009cb6a423e8d1cef9bc2e161c38.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyh0Di5S chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyh0Di5S cat '/tmp/Isyw8pCKMz/objcopyh0Di5S' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyh0Di5S debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 1ff9c770f1291fe0013f308714357d4fd474a006 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/f9c770f1291fe0013f308714357d4fd474a006.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/f9c770f1291fe0013f308714357d4fd474a006.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip1gango debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip1gango cat '/tmp/Isyw8pCKMz/strip1gango' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip1gango debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/f9c770f1291fe0013f308714357d4fd474a006.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyEqNreL chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyEqNreL cat '/tmp/Isyw8pCKMz/objcopyEqNreL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyEqNreL debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 89dd5b3d4c68baa70687aba3987a217d611e92e8 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/dd5b3d4c68baa70687aba3987a217d611e92e8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/dd5b3d4c68baa70687aba3987a217d611e92e8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripkH_uG3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripkH_uG3 cat '/tmp/Isyw8pCKMz/stripkH_uG3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripkH_uG3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/dd5b3d4c68baa70687aba3987a217d611e92e8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylmPhkZ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylmPhkZ cat '/tmp/Isyw8pCKMz/objcopylmPhkZ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopylmPhkZ debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0e756569ec23487f9c47d8091fd27b854d150b05 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/756569ec23487f9c47d8091fd27b854d150b05.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/756569ec23487f9c47d8091fd27b854d150b05.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripHoqRwK debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripHoqRwK cat '/tmp/Isyw8pCKMz/stripHoqRwK' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripHoqRwK debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/756569ec23487f9c47d8091fd27b854d150b05.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIEifmB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIEifmB cat '/tmp/Isyw8pCKMz/objcopyIEifmB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyIEifmB debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0ca743a66ddaf6cc61afa1243989705e3baaa60a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/a743a66ddaf6cc61afa1243989705e3baaa60a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/a743a66ddaf6cc61afa1243989705e3baaa60a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripxZkbj_ debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripxZkbj_ cat '/tmp/Isyw8pCKMz/stripxZkbj_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripxZkbj_ debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/a743a66ddaf6cc61afa1243989705e3baaa60a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXVUGbg chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXVUGbg cat '/tmp/Isyw8pCKMz/objcopyXVUGbg' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyXVUGbg debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 250fd02614968543921867a5e7ed778d29651e37 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/0fd02614968543921867a5e7ed778d29651e37.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/0fd02614968543921867a5e7ed778d29651e37.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striptJTaUU debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striptJTaUU cat '/tmp/Isyw8pCKMz/striptJTaUU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striptJTaUU debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/0fd02614968543921867a5e7ed778d29651e37.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMl56E8 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMl56E8 cat '/tmp/Isyw8pCKMz/objcopyMl56E8' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyMl56E8 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4a9bb83e1706577edbbd12c23b0e0966631d0ee6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/9bb83e1706577edbbd12c23b0e0966631d0ee6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/9bb83e1706577edbbd12c23b0e0966631d0ee6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripLsrB4u debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripLsrB4u cat '/tmp/Isyw8pCKMz/stripLsrB4u' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripLsrB4u debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/9bb83e1706577edbbd12c23b0e0966631d0ee6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8yy0pP chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8yy0pP cat '/tmp/Isyw8pCKMz/objcopy8yy0pP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy8yy0pP debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0902fb7d73cbae77aa803f11ea03c79d5ff1c974 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/02fb7d73cbae77aa803f11ea03c79d5ff1c974.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/02fb7d73cbae77aa803f11ea03c79d5ff1c974.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripoXTctY debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripoXTctY cat '/tmp/Isyw8pCKMz/stripoXTctY' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripoXTctY debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/02fb7d73cbae77aa803f11ea03c79d5ff1c974.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyKWJoax chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyKWJoax cat '/tmp/Isyw8pCKMz/objcopyKWJoax' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyKWJoax debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 29edbd4f45ebdffc17e7220502ee53cc2f7124a3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/edbd4f45ebdffc17e7220502ee53cc2f7124a3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/edbd4f45ebdffc17e7220502ee53cc2f7124a3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip7IymrE debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip7IymrE cat '/tmp/Isyw8pCKMz/strip7IymrE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip7IymrE debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/edbd4f45ebdffc17e7220502ee53cc2f7124a3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy79wfAC chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy79wfAC cat '/tmp/Isyw8pCKMz/objcopy79wfAC' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy79wfAC debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 75be0be175177c1e25bc43d767220e835255880a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/be0be175177c1e25bc43d767220e835255880a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/be0be175177c1e25bc43d767220e835255880a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip7vt3Jt debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip7vt3Jt cat '/tmp/Isyw8pCKMz/strip7vt3Jt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip7vt3Jt debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/be0be175177c1e25bc43d767220e835255880a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMCgUUz chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMCgUUz cat '/tmp/Isyw8pCKMz/objcopyMCgUUz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyMCgUUz debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a7e79c96dc5dab6107b5b1b15f8a30456d3b7ef0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/e79c96dc5dab6107b5b1b15f8a30456d3b7ef0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/e79c96dc5dab6107b5b1b15f8a30456d3b7ef0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripE88qBP debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripE88qBP cat '/tmp/Isyw8pCKMz/stripE88qBP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripE88qBP debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/e79c96dc5dab6107b5b1b15f8a30456d3b7ef0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyqnHmN4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyqnHmN4 cat '/tmp/Isyw8pCKMz/objcopyqnHmN4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyqnHmN4 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 c80a670cbbb6d2f4790d575427a03a41e559c992 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/0a670cbbb6d2f4790d575427a03a41e559c992.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/0a670cbbb6d2f4790d575427a03a41e559c992.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip5GVclc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip5GVclc cat '/tmp/Isyw8pCKMz/strip5GVclc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip5GVclc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/0a670cbbb6d2f4790d575427a03a41e559c992.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy6GsZY3 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy6GsZY3 cat '/tmp/Isyw8pCKMz/objcopy6GsZY3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy6GsZY3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6b4054dac835fad527ec6487e3b488184ec1aef6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/4054dac835fad527ec6487e3b488184ec1aef6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/4054dac835fad527ec6487e3b488184ec1aef6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripdcWzYc debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripdcWzYc cat '/tmp/Isyw8pCKMz/stripdcWzYc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripdcWzYc debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/4054dac835fad527ec6487e3b488184ec1aef6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZO6fTh chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZO6fTh cat '/tmp/Isyw8pCKMz/objcopyZO6fTh' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyZO6fTh debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 410117f903d3038ccde1e1de24ae6426ff4c32de install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/0117f903d3038ccde1e1de24ae6426ff4c32de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/0117f903d3038ccde1e1de24ae6426ff4c32de.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripe8_t7U debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripe8_t7U cat '/tmp/Isyw8pCKMz/stripe8_t7U' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripe8_t7U debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/0117f903d3038ccde1e1de24ae6426ff4c32de.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIcxRvq chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyIcxRvq cat '/tmp/Isyw8pCKMz/objcopyIcxRvq' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyIcxRvq debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 b89ad0ccb2d8af89a67671b0cbbca8a4b61ffa1c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/9ad0ccb2d8af89a67671b0cbbca8a4b61ffa1c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/9ad0ccb2d8af89a67671b0cbbca8a4b61ffa1c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripbWTpt9 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripbWTpt9 cat '/tmp/Isyw8pCKMz/stripbWTpt9' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripbWTpt9 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/9ad0ccb2d8af89a67671b0cbbca8a4b61ffa1c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyOw5Ctw chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyOw5Ctw cat '/tmp/Isyw8pCKMz/objcopyOw5Ctw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyOw5Ctw debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 cc27a5c59025943ae4c4eb8af1d7eb7456b0fa33 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/27a5c59025943ae4c4eb8af1d7eb7456b0fa33.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/27a5c59025943ae4c4eb8af1d7eb7456b0fa33.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripVRrBGn debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripVRrBGn cat '/tmp/Isyw8pCKMz/stripVRrBGn' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripVRrBGn debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/27a5c59025943ae4c4eb8af1d7eb7456b0fa33.debug debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrG4HPw chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrG4HPw cat '/tmp/Isyw8pCKMz/objcopyrG4HPw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyrG4HPw debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 af3327bcee351e970c30b1067518ff0c7afb3ce6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/3327bcee351e970c30b1067518ff0c7afb3ce6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/3327bcee351e970c30b1067518ff0c7afb3ce6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripO33sdJ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripO33sdJ cat '/tmp/Isyw8pCKMz/stripO33sdJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripO33sdJ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/3327bcee351e970c30b1067518ff0c7afb3ce6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyiLL_hJ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyiLL_hJ cat '/tmp/Isyw8pCKMz/objcopyiLL_hJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyiLL_hJ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 6c10489aad81cadda96651cc03268dc5abfbe6d7 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/10489aad81cadda96651cc03268dc5abfbe6d7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/10489aad81cadda96651cc03268dc5abfbe6d7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striphuGvkh debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striphuGvkh cat '/tmp/Isyw8pCKMz/striphuGvkh' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striphuGvkh debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/10489aad81cadda96651cc03268dc5abfbe6d7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyGyyxoc chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyGyyxoc cat '/tmp/Isyw8pCKMz/objcopyGyyxoc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyGyyxoc debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 47f2529442495531215753d3e74a33a7e03bd3b1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/f2529442495531215753d3e74a33a7e03bd3b1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/f2529442495531215753d3e74a33a7e03bd3b1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripDPCU1Y debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripDPCU1Y cat '/tmp/Isyw8pCKMz/stripDPCU1Y' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripDPCU1Y debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/47/f2529442495531215753d3e74a33a7e03bd3b1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyqMLd4z chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyqMLd4z cat '/tmp/Isyw8pCKMz/objcopyqMLd4z' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyqMLd4z debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b3767497e44b73fd852385c9b1652d4a508fe6e4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/767497e44b73fd852385c9b1652d4a508fe6e4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/767497e44b73fd852385c9b1652d4a508fe6e4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripYqbk92 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripYqbk92 cat '/tmp/Isyw8pCKMz/stripYqbk92' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripYqbk92 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/767497e44b73fd852385c9b1652d4a508fe6e4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyhLxcC6 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyhLxcC6 cat '/tmp/Isyw8pCKMz/objcopyhLxcC6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyhLxcC6 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 58a4514af233fcdc966c2aa50bc66047eb045379 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/a4514af233fcdc966c2aa50bc66047eb045379.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/a4514af233fcdc966c2aa50bc66047eb045379.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripI1ezIE debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripI1ezIE cat '/tmp/Isyw8pCKMz/stripI1ezIE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripI1ezIE debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/a4514af233fcdc966c2aa50bc66047eb045379.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopym9Zn8o chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopym9Zn8o cat '/tmp/Isyw8pCKMz/objcopym9Zn8o' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopym9Zn8o debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 339044bf37abeaa3624d573deffadfe1f7ade399 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/9044bf37abeaa3624d573deffadfe1f7ade399.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/9044bf37abeaa3624d573deffadfe1f7ade399.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip6CZvyL debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip6CZvyL cat '/tmp/Isyw8pCKMz/strip6CZvyL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip6CZvyL debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/9044bf37abeaa3624d573deffadfe1f7ade399.debug debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyu8xizV chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyu8xizV cat '/tmp/Isyw8pCKMz/objcopyu8xizV' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyu8xizV debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 b0f5760df8c71b646cf6a47bed8ed3fd4ec0cdef install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/f5760df8c71b646cf6a47bed8ed3fd4ec0cdef.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/f5760df8c71b646cf6a47bed8ed3fd4ec0cdef.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripj32pZh debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripj32pZh cat '/tmp/Isyw8pCKMz/stripj32pZh' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripj32pZh debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/f5760df8c71b646cf6a47bed8ed3fd4ec0cdef.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQBYtnI chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQBYtnI cat '/tmp/Isyw8pCKMz/objcopyQBYtnI' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyQBYtnI debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a6f5518b2f8e099a2c1a64ecfb918225c332b2fe install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/f5518b2f8e099a2c1a64ecfb918225c332b2fe.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/f5518b2f8e099a2c1a64ecfb918225c332b2fe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip9ravzw debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip9ravzw cat '/tmp/Isyw8pCKMz/strip9ravzw' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip9ravzw debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/f5518b2f8e099a2c1a64ecfb918225c332b2fe.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyS43Dck chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyS43Dck cat '/tmp/Isyw8pCKMz/objcopyS43Dck' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyS43Dck debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a3ec2123555b4d23a17f9ef7849867cebbd009cd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/ec2123555b4d23a17f9ef7849867cebbd009cd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/ec2123555b4d23a17f9ef7849867cebbd009cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripMv5IVn debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripMv5IVn cat '/tmp/Isyw8pCKMz/stripMv5IVn' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripMv5IVn debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/ec2123555b4d23a17f9ef7849867cebbd009cd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyPMcWVz chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyPMcWVz cat '/tmp/Isyw8pCKMz/objcopyPMcWVz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyPMcWVz debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 556764be01781ad3e9ee0f2c8cb2046ae7915d57 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/6764be01781ad3e9ee0f2c8cb2046ae7915d57.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/6764be01781ad3e9ee0f2c8cb2046ae7915d57.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripOM92SO debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripOM92SO cat '/tmp/Isyw8pCKMz/stripOM92SO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripOM92SO debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/55/6764be01781ad3e9ee0f2c8cb2046ae7915d57.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyv2nHZA chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyv2nHZA cat '/tmp/Isyw8pCKMz/objcopyv2nHZA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyv2nHZA debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 04fe7c06272d1895400c272799011d708c00c438 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04/fe7c06272d1895400c272799011d708c00c438.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04/fe7c06272d1895400c272799011d708c00c438.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip4ZVXbc debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip4ZVXbc cat '/tmp/Isyw8pCKMz/strip4ZVXbc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip4ZVXbc debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04/fe7c06272d1895400c272799011d708c00c438.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_KwGKB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_KwGKB cat '/tmp/Isyw8pCKMz/objcopy_KwGKB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy_KwGKB debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4f544dffec4bb877d3f0148647e40ccd76b6f757 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/544dffec4bb877d3f0148647e40ccd76b6f757.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/544dffec4bb877d3f0148647e40ccd76b6f757.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripJqlkNP debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripJqlkNP cat '/tmp/Isyw8pCKMz/stripJqlkNP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripJqlkNP debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/544dffec4bb877d3f0148647e40ccd76b6f757.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylLyLcE chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopylLyLcE cat '/tmp/Isyw8pCKMz/objcopylLyLcE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopylLyLcE debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 283dab1cc59aa0fe59fcd2ef44b9c25dcc02ac1b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/3dab1cc59aa0fe59fcd2ef44b9c25dcc02ac1b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/3dab1cc59aa0fe59fcd2ef44b9c25dcc02ac1b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/striprl_PR6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/striprl_PR6 cat '/tmp/Isyw8pCKMz/striprl_PR6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/striprl_PR6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/3dab1cc59aa0fe59fcd2ef44b9c25dcc02ac1b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXopQe6 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXopQe6 cat '/tmp/Isyw8pCKMz/objcopyXopQe6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyXopQe6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8af995395b527bf6563c729f63e9bffc8a11bc46 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/f995395b527bf6563c729f63e9bffc8a11bc46.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/f995395b527bf6563c729f63e9bffc8a11bc46.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripka83TN debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripka83TN cat '/tmp/Isyw8pCKMz/stripka83TN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripka83TN debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8a/f995395b527bf6563c729f63e9bffc8a11bc46.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyhSoAfl chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyhSoAfl cat '/tmp/Isyw8pCKMz/objcopyhSoAfl' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyhSoAfl debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ea0eca96ee4231c2c917f2874df4918fabcfce58 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/0eca96ee4231c2c917f2874df4918fabcfce58.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/0eca96ee4231c2c917f2874df4918fabcfce58.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripilNNmX debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripilNNmX cat '/tmp/Isyw8pCKMz/stripilNNmX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripilNNmX debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/0eca96ee4231c2c917f2874df4918fabcfce58.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDYcQ3F chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyDYcQ3F cat '/tmp/Isyw8pCKMz/objcopyDYcQ3F' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyDYcQ3F debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 b7f3975edfbecd2e137587d5b71e5f8f89df0b4b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/f3975edfbecd2e137587d5b71e5f8f89df0b4b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/f3975edfbecd2e137587d5b71e5f8f89df0b4b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripRCEzzH debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripRCEzzH cat '/tmp/Isyw8pCKMz/stripRCEzzH' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripRCEzzH debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/f3975edfbecd2e137587d5b71e5f8f89df0b4b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyeQfw9T chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyeQfw9T cat '/tmp/Isyw8pCKMz/objcopyeQfw9T' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyeQfw9T debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e7d0293cbdec7d724edf8e4a32db13323cd85c1d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/d0293cbdec7d724edf8e4a32db13323cd85c1d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/d0293cbdec7d724edf8e4a32db13323cd85c1d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripx5726k debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripx5726k cat '/tmp/Isyw8pCKMz/stripx5726k' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripx5726k debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/d0293cbdec7d724edf8e4a32db13323cd85c1d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyYIsI6G chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyYIsI6G cat '/tmp/Isyw8pCKMz/objcopyYIsI6G' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyYIsI6G debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d0bc94747673efb50e3ccc6ea44a4669ad6076f7 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0/bc94747673efb50e3ccc6ea44a4669ad6076f7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0/bc94747673efb50e3ccc6ea44a4669ad6076f7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripcLfQka debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripcLfQka cat '/tmp/Isyw8pCKMz/stripcLfQka' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripcLfQka debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d0/bc94747673efb50e3ccc6ea44a4669ad6076f7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyfJJygp chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyfJJygp cat '/tmp/Isyw8pCKMz/objcopyfJJygp' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyfJJygp debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 61e7f35cb39f1c68732302afa88e6f18947b236e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61/e7f35cb39f1c68732302afa88e6f18947b236e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61/e7f35cb39f1c68732302afa88e6f18947b236e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripy6EU6J debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripy6EU6J cat '/tmp/Isyw8pCKMz/stripy6EU6J' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripy6EU6J debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61/e7f35cb39f1c68732302afa88e6f18947b236e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyoHO6o1 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyoHO6o1 cat '/tmp/Isyw8pCKMz/objcopyoHO6o1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyoHO6o1 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 01a9aeedb7a79f56e858aa23218a38a0d63afb20 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/a9aeedb7a79f56e858aa23218a38a0d63afb20.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/a9aeedb7a79f56e858aa23218a38a0d63afb20.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripE74kZR debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripE74kZR cat '/tmp/Isyw8pCKMz/stripE74kZR' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripE74kZR debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/a9aeedb7a79f56e858aa23218a38a0d63afb20.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMLYt_E chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyMLYt_E cat '/tmp/Isyw8pCKMz/objcopyMLYt_E' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyMLYt_E debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 bdcab0eeca31e0a0b399c6b83ee0ea7de8f9678e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/cab0eeca31e0a0b399c6b83ee0ea7de8f9678e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/cab0eeca31e0a0b399c6b83ee0ea7de8f9678e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripf2zew9 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripf2zew9 cat '/tmp/Isyw8pCKMz/stripf2zew9' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripf2zew9 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/cab0eeca31e0a0b399c6b83ee0ea7de8f9678e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy57gxT3 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy57gxT3 cat '/tmp/Isyw8pCKMz/objcopy57gxT3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy57gxT3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 44dbd7e0d8e9db3a6747f7f7762d3e415ba3eb0e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/dbd7e0d8e9db3a6747f7f7762d3e415ba3eb0e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/dbd7e0d8e9db3a6747f7f7762d3e415ba3eb0e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripPhKxS3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripPhKxS3 cat '/tmp/Isyw8pCKMz/stripPhKxS3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripPhKxS3 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/dbd7e0d8e9db3a6747f7f7762d3e415ba3eb0e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy9SxrxX chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy9SxrxX cat '/tmp/Isyw8pCKMz/objcopy9SxrxX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy9SxrxX debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 835faa6269e4a7fe63405fe1698fafcf277b65ec install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/5faa6269e4a7fe63405fe1698fafcf277b65ec.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/5faa6269e4a7fe63405fe1698fafcf277b65ec.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripSIBajv debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripSIBajv cat '/tmp/Isyw8pCKMz/stripSIBajv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripSIBajv debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/5faa6269e4a7fe63405fe1698fafcf277b65ec.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrgZDq4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyrgZDq4 cat '/tmp/Isyw8pCKMz/objcopyrgZDq4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyrgZDq4 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 b49dc2b19a525cd39ce3ea7438b488ff398e287c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4/9dc2b19a525cd39ce3ea7438b488ff398e287c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4/9dc2b19a525cd39ce3ea7438b488ff398e287c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripLqb_uH debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripLqb_uH cat '/tmp/Isyw8pCKMz/stripLqb_uH' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripLqb_uH debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b4/9dc2b19a525cd39ce3ea7438b488ff398e287c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQI3eP2 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQI3eP2 cat '/tmp/Isyw8pCKMz/objcopyQI3eP2' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyQI3eP2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 99fd8e01f8ae86b5ee8e3d864d55e5785928793c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/fd8e01f8ae86b5ee8e3d864d55e5785928793c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/fd8e01f8ae86b5ee8e3d864d55e5785928793c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripxhKiCv debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripxhKiCv cat '/tmp/Isyw8pCKMz/stripxhKiCv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripxhKiCv debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/fd8e01f8ae86b5ee8e3d864d55e5785928793c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyNb04_q chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyNb04_q cat '/tmp/Isyw8pCKMz/objcopyNb04_q' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyNb04_q debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 297399a1172a6ba2a93aca58826c6efc7c7a97c0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/7399a1172a6ba2a93aca58826c6efc7c7a97c0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/7399a1172a6ba2a93aca58826c6efc7c7a97c0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripxa9zy1 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripxa9zy1 cat '/tmp/Isyw8pCKMz/stripxa9zy1' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripxa9zy1 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/7399a1172a6ba2a93aca58826c6efc7c7a97c0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzSmKeb chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzSmKeb cat '/tmp/Isyw8pCKMz/objcopyzSmKeb' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyzSmKeb debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e385bb7c172e89ab40b83b064d78e1963693cc2a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/85bb7c172e89ab40b83b064d78e1963693cc2a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/85bb7c172e89ab40b83b064d78e1963693cc2a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripciUggu debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripciUggu cat '/tmp/Isyw8pCKMz/stripciUggu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripciUggu debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/85bb7c172e89ab40b83b064d78e1963693cc2a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXH96Wm chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXH96Wm cat '/tmp/Isyw8pCKMz/objcopyXH96Wm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyXH96Wm debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 ade672ac5bb33b434c5a4738497803a230a44580 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/e672ac5bb33b434c5a4738497803a230a44580.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/e672ac5bb33b434c5a4738497803a230a44580.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripJFpbsU debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripJFpbsU cat '/tmp/Isyw8pCKMz/stripJFpbsU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripJFpbsU debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/e672ac5bb33b434c5a4738497803a230a44580.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyq4EuG_ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyq4EuG_ cat '/tmp/Isyw8pCKMz/objcopyq4EuG_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyq4EuG_ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 c82f6adf5a7694e8d8e823eb99232447a9729788 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/2f6adf5a7694e8d8e823eb99232447a9729788.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/2f6adf5a7694e8d8e823eb99232447a9729788.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripAHsLRm debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripAHsLRm cat '/tmp/Isyw8pCKMz/stripAHsLRm' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripAHsLRm debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/2f6adf5a7694e8d8e823eb99232447a9729788.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy5Rs6Ar chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy5Rs6Ar cat '/tmp/Isyw8pCKMz/objcopy5Rs6Ar' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy5Rs6Ar debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 446a781c9516ee82714636df8c31d35db05aad4c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/6a781c9516ee82714636df8c31d35db05aad4c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/6a781c9516ee82714636df8c31d35db05aad4c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripkjdF55 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripkjdF55 cat '/tmp/Isyw8pCKMz/stripkjdF55' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripkjdF55 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/6a781c9516ee82714636df8c31d35db05aad4c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyq9qTCu chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyq9qTCu cat '/tmp/Isyw8pCKMz/objcopyq9qTCu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyq9qTCu debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0ab3a1cc3f3f46c359dbd43fe8112b0a35a1252d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/b3a1cc3f3f46c359dbd43fe8112b0a35a1252d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/b3a1cc3f3f46c359dbd43fe8112b0a35a1252d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripunOFsB debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripunOFsB cat '/tmp/Isyw8pCKMz/stripunOFsB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripunOFsB debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/b3a1cc3f3f46c359dbd43fe8112b0a35a1252d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyo0_NY5 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyo0_NY5 cat '/tmp/Isyw8pCKMz/objcopyo0_NY5' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyo0_NY5 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 e5db9e9220fab10fdf0a87213f89b73cd8f422b0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/db9e9220fab10fdf0a87213f89b73cd8f422b0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/db9e9220fab10fdf0a87213f89b73cd8f422b0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripEuuvZR debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripEuuvZR cat '/tmp/Isyw8pCKMz/stripEuuvZR' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripEuuvZR debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/db9e9220fab10fdf0a87213f89b73cd8f422b0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQelZts chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQelZts cat '/tmp/Isyw8pCKMz/objcopyQelZts' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyQelZts debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 d8dbab40f3f0822886adc54503b62f6dd4d72934 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/dbab40f3f0822886adc54503b62f6dd4d72934.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/dbab40f3f0822886adc54503b62f6dd4d72934.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripZald5v debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripZald5v cat '/tmp/Isyw8pCKMz/stripZald5v' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripZald5v debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/dbab40f3f0822886adc54503b62f6dd4d72934.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopymVMWQY chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopymVMWQY cat '/tmp/Isyw8pCKMz/objcopymVMWQY' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopymVMWQY debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6d43c6047bd10f37f9d190386ccdbece278c58f1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/43c6047bd10f37f9d190386ccdbece278c58f1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/43c6047bd10f37f9d190386ccdbece278c58f1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripaxRKFX debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripaxRKFX cat '/tmp/Isyw8pCKMz/stripaxRKFX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripaxRKFX debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/43c6047bd10f37f9d190386ccdbece278c58f1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyARUVsk chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyARUVsk cat '/tmp/Isyw8pCKMz/objcopyARUVsk' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyARUVsk debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 4ca3daefb400a47a2ee34f212c169974c76aa129 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/a3daefb400a47a2ee34f212c169974c76aa129.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/a3daefb400a47a2ee34f212c169974c76aa129.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripnuRJuP debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripnuRJuP cat '/tmp/Isyw8pCKMz/stripnuRJuP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripnuRJuP debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/a3daefb400a47a2ee34f212c169974c76aa129.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8LBNRj chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8LBNRj cat '/tmp/Isyw8pCKMz/objcopy8LBNRj' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy8LBNRj debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 59c3a454bdf242d07ed3d6a83905a8c3e60bfe8e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/c3a454bdf242d07ed3d6a83905a8c3e60bfe8e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/c3a454bdf242d07ed3d6a83905a8c3e60bfe8e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripKa9bxs debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripKa9bxs cat '/tmp/Isyw8pCKMz/stripKa9bxs' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripKa9bxs debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/c3a454bdf242d07ed3d6a83905a8c3e60bfe8e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyErC0Yq chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyErC0Yq cat '/tmp/Isyw8pCKMz/objcopyErC0Yq' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyErC0Yq debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 845a4e8226f8bfd74b83cea857ed5f9742c87bc5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/5a4e8226f8bfd74b83cea857ed5f9742c87bc5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/5a4e8226f8bfd74b83cea857ed5f9742c87bc5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripDthwVz debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripDthwVz cat '/tmp/Isyw8pCKMz/stripDthwVz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripDthwVz debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/5a4e8226f8bfd74b83cea857ed5f9742c87bc5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyc59Z6o chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyc59Z6o cat '/tmp/Isyw8pCKMz/objcopyc59Z6o' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyc59Z6o debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 3f899329fc64f1e0da0afd04c645746de8db1a52 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/899329fc64f1e0da0afd04c645746de8db1a52.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/899329fc64f1e0da0afd04c645746de8db1a52.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripSbKC5X debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripSbKC5X cat '/tmp/Isyw8pCKMz/stripSbKC5X' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripSbKC5X debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/899329fc64f1e0da0afd04c645746de8db1a52.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyO1eTzD chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyO1eTzD cat '/tmp/Isyw8pCKMz/objcopyO1eTzD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyO1eTzD debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 33166fea980fea4c9cf78bf24129e5ab087bc498 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/166fea980fea4c9cf78bf24129e5ab087bc498.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/166fea980fea4c9cf78bf24129e5ab087bc498.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip236hUu debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip236hUu cat '/tmp/Isyw8pCKMz/strip236hUu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip236hUu debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/166fea980fea4c9cf78bf24129e5ab087bc498.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyECAeBJ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyECAeBJ cat '/tmp/Isyw8pCKMz/objcopyECAeBJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyECAeBJ debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 59204936ef4fe7ce2074ef6f7154651fbc8585b6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/204936ef4fe7ce2074ef6f7154651fbc8585b6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/204936ef4fe7ce2074ef6f7154651fbc8585b6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip5chtPR debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip5chtPR cat '/tmp/Isyw8pCKMz/strip5chtPR' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip5chtPR debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/204936ef4fe7ce2074ef6f7154651fbc8585b6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyiDWCfW chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyiDWCfW cat '/tmp/Isyw8pCKMz/objcopyiDWCfW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyiDWCfW debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 3060fa6bfe87a89bfdb523c27d4251cdfee4508d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/60fa6bfe87a89bfdb523c27d4251cdfee4508d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/60fa6bfe87a89bfdb523c27d4251cdfee4508d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripbI1wYr debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripbI1wYr cat '/tmp/Isyw8pCKMz/stripbI1wYr' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripbI1wYr debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/60fa6bfe87a89bfdb523c27d4251cdfee4508d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy6MX29a chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy6MX29a cat '/tmp/Isyw8pCKMz/objcopy6MX29a' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy6MX29a debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2e0b7f367f2884b65ac5a7c70cb777f5609e2ce8 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/0b7f367f2884b65ac5a7c70cb777f5609e2ce8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/0b7f367f2884b65ac5a7c70cb777f5609e2ce8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripJa0pso debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripJa0pso cat '/tmp/Isyw8pCKMz/stripJa0pso' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripJa0pso debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/0b7f367f2884b65ac5a7c70cb777f5609e2ce8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyLt4y46 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyLt4y46 cat '/tmp/Isyw8pCKMz/objcopyLt4y46' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyLt4y46 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 1eeb065bc4da4d64f336e2b04ad7dc2d9d9595b0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/eb065bc4da4d64f336e2b04ad7dc2d9d9595b0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/eb065bc4da4d64f336e2b04ad7dc2d9d9595b0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripV_YMUt debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripV_YMUt cat '/tmp/Isyw8pCKMz/stripV_YMUt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripV_YMUt debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/eb065bc4da4d64f336e2b04ad7dc2d9d9595b0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZJttgh chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZJttgh cat '/tmp/Isyw8pCKMz/objcopyZJttgh' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyZJttgh debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 862f29dfa180eaeb8347751076a3679900209a47 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/2f29dfa180eaeb8347751076a3679900209a47.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/2f29dfa180eaeb8347751076a3679900209a47.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip5y2GJL debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip5y2GJL cat '/tmp/Isyw8pCKMz/strip5y2GJL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip5y2GJL debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/2f29dfa180eaeb8347751076a3679900209a47.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_h8Szq chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy_h8Szq cat '/tmp/Isyw8pCKMz/objcopy_h8Szq' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy_h8Szq debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 9acf9ee9af18a9d4225e611233d6a6fe80a07df0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/cf9ee9af18a9d4225e611233d6a6fe80a07df0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/cf9ee9af18a9d4225e611233d6a6fe80a07df0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stript1X4Zx debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stript1X4Zx cat '/tmp/Isyw8pCKMz/stript1X4Zx' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stript1X4Zx debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/cf9ee9af18a9d4225e611233d6a6fe80a07df0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyb1axgT chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyb1axgT cat '/tmp/Isyw8pCKMz/objcopyb1axgT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyb1axgT debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 9abe6317ec961d397acbd1641f67510617786ee6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/be6317ec961d397acbd1641f67510617786ee6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/be6317ec961d397acbd1641f67510617786ee6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripsSaHJT debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripsSaHJT cat '/tmp/Isyw8pCKMz/stripsSaHJT' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripsSaHJT debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/be6317ec961d397acbd1641f67510617786ee6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyVgsayD chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyVgsayD cat '/tmp/Isyw8pCKMz/objcopyVgsayD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyVgsayD debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 7bd4d53316f4ea8b90d083233c9766129e8d6756 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/d4d53316f4ea8b90d083233c9766129e8d6756.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/d4d53316f4ea8b90d083233c9766129e8d6756.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripuIyzmW debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripuIyzmW cat '/tmp/Isyw8pCKMz/stripuIyzmW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripuIyzmW debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/d4d53316f4ea8b90d083233c9766129e8d6756.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyoi6z8f chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyoi6z8f cat '/tmp/Isyw8pCKMz/objcopyoi6z8f' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyoi6z8f debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 99938e2ec6c2f93649f3373cf814852b70d88b9e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/938e2ec6c2f93649f3373cf814852b70d88b9e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/938e2ec6c2f93649f3373cf814852b70d88b9e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripQ6xeNF debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripQ6xeNF cat '/tmp/Isyw8pCKMz/stripQ6xeNF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripQ6xeNF debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/938e2ec6c2f93649f3373cf814852b70d88b9e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyR0wf2R chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyR0wf2R cat '/tmp/Isyw8pCKMz/objcopyR0wf2R' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyR0wf2R debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 a9ded91831ff7282288495702024f1845ca4dc01 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/ded91831ff7282288495702024f1845ca4dc01.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/ded91831ff7282288495702024f1845ca4dc01.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripa_hkb3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripa_hkb3 cat '/tmp/Isyw8pCKMz/stripa_hkb3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripa_hkb3 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/ded91831ff7282288495702024f1845ca4dc01.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyHPsDpW chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyHPsDpW cat '/tmp/Isyw8pCKMz/objcopyHPsDpW' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyHPsDpW debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 cef5217498373ae3b4180f53dc83e882b2608dec install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/f5217498373ae3b4180f53dc83e882b2608dec.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/f5217498373ae3b4180f53dc83e882b2608dec.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripU4v871 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripU4v871 cat '/tmp/Isyw8pCKMz/stripU4v871' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripU4v871 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/f5217498373ae3b4180f53dc83e882b2608dec.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyJVJMSI chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyJVJMSI cat '/tmp/Isyw8pCKMz/objcopyJVJMSI' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyJVJMSI debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 db9e66bcde231d8537f12b9965f001714c7e2950 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/9e66bcde231d8537f12b9965f001714c7e2950.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/9e66bcde231d8537f12b9965f001714c7e2950.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripwdLZbu debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripwdLZbu cat '/tmp/Isyw8pCKMz/stripwdLZbu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripwdLZbu debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/9e66bcde231d8537f12b9965f001714c7e2950.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyVK5Ee_ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyVK5Ee_ cat '/tmp/Isyw8pCKMz/objcopyVK5Ee_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyVK5Ee_ debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 d7b97b7828552638702ee7dff9e52efab9ab530b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7/b97b7828552638702ee7dff9e52efab9ab530b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7/b97b7828552638702ee7dff9e52efab9ab530b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripJ7OPb4 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripJ7OPb4 cat '/tmp/Isyw8pCKMz/stripJ7OPb4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripJ7OPb4 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7/b97b7828552638702ee7dff9e52efab9ab530b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyGUOPeV chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyGUOPeV cat '/tmp/Isyw8pCKMz/objcopyGUOPeV' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyGUOPeV debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 443d9bca6aead5c4b5cfd383f089ce5adb3d8f9d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/3d9bca6aead5c4b5cfd383f089ce5adb3d8f9d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/3d9bca6aead5c4b5cfd383f089ce5adb3d8f9d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripz_Gg0G debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripz_Gg0G cat '/tmp/Isyw8pCKMz/stripz_Gg0G' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripz_Gg0G debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/3d9bca6aead5c4b5cfd383f089ce5adb3d8f9d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyWyHOc5 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyWyHOc5 cat '/tmp/Isyw8pCKMz/objcopyWyHOc5' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyWyHOc5 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2419f5b19372009a0227a1680e699f599f530433 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/19f5b19372009a0227a1680e699f599f530433.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/19f5b19372009a0227a1680e699f599f530433.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip94G1fJ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip94G1fJ cat '/tmp/Isyw8pCKMz/strip94G1fJ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip94G1fJ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/19f5b19372009a0227a1680e699f599f530433.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZQJKEc chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyZQJKEc cat '/tmp/Isyw8pCKMz/objcopyZQJKEc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyZQJKEc debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 175d095e1642c253d4e1bcd17025498428792895 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/5d095e1642c253d4e1bcd17025498428792895.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/5d095e1642c253d4e1bcd17025498428792895.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripZ97C37 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripZ97C37 cat '/tmp/Isyw8pCKMz/stripZ97C37' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripZ97C37 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/17/5d095e1642c253d4e1bcd17025498428792895.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjkqNiA chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjkqNiA cat '/tmp/Isyw8pCKMz/objcopyjkqNiA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyjkqNiA debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 d98c1e4657fb7c8bd1bcc4b874c267a456830d31 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/8c1e4657fb7c8bd1bcc4b874c267a456830d31.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/8c1e4657fb7c8bd1bcc4b874c267a456830d31.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripHZo6kO debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripHZo6kO cat '/tmp/Isyw8pCKMz/stripHZo6kO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripHZo6kO debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/8c1e4657fb7c8bd1bcc4b874c267a456830d31.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8vFIIc chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy8vFIIc cat '/tmp/Isyw8pCKMz/objcopy8vFIIc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy8vFIIc debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 58cc7297cae4bb9d997fe85abaaefc08e69c4c3a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/cc7297cae4bb9d997fe85abaaefc08e69c4c3a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/cc7297cae4bb9d997fe85abaaefc08e69c4c3a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripehrhqF debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripehrhqF cat '/tmp/Isyw8pCKMz/stripehrhqF' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripehrhqF debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/cc7297cae4bb9d997fe85abaaefc08e69c4c3a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyyP_Eqv chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyyP_Eqv cat '/tmp/Isyw8pCKMz/objcopyyP_Eqv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyyP_Eqv debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 97aa501538737771d7276d7c6958e9c16a3ee4f7 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/aa501538737771d7276d7c6958e9c16a3ee4f7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/aa501538737771d7276d7c6958e9c16a3ee4f7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripUGUepU debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripUGUepU cat '/tmp/Isyw8pCKMz/stripUGUepU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripUGUepU debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/aa501538737771d7276d7c6958e9c16a3ee4f7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyq6C743 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyq6C743 cat '/tmp/Isyw8pCKMz/objcopyq6C743' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyq6C743 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 491bfd82cd9b318052feb394f0eae63d454aaf00 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/1bfd82cd9b318052feb394f0eae63d454aaf00.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/1bfd82cd9b318052feb394f0eae63d454aaf00.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip1Z0Gny debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip1Z0Gny cat '/tmp/Isyw8pCKMz/strip1Z0Gny' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip1Z0Gny debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/1bfd82cd9b318052feb394f0eae63d454aaf00.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyUnTq1C chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyUnTq1C cat '/tmp/Isyw8pCKMz/objcopyUnTq1C' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyUnTq1C debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0edd1a38d2e46e31edb0a1bce1be02768a21420c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/dd1a38d2e46e31edb0a1bce1be02768a21420c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/dd1a38d2e46e31edb0a1bce1be02768a21420c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripC2MGqe debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripC2MGqe cat '/tmp/Isyw8pCKMz/stripC2MGqe' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripC2MGqe debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/dd1a38d2e46e31edb0a1bce1be02768a21420c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy4XXIVU chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy4XXIVU cat '/tmp/Isyw8pCKMz/objcopy4XXIVU' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy4XXIVU debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 5fdac873caca42fdad0ac2ef368a4266c189668c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/dac873caca42fdad0ac2ef368a4266c189668c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/dac873caca42fdad0ac2ef368a4266c189668c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip0voLnP debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip0voLnP cat '/tmp/Isyw8pCKMz/strip0voLnP' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip0voLnP debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/dac873caca42fdad0ac2ef368a4266c189668c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyp70lUd chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyp70lUd cat '/tmp/Isyw8pCKMz/objcopyp70lUd' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyp70lUd debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 608ff871d58769328e371fbc6b3f8159818884f6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/8ff871d58769328e371fbc6b3f8159818884f6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/8ff871d58769328e371fbc6b3f8159818884f6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripxSFcIr debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripxSFcIr cat '/tmp/Isyw8pCKMz/stripxSFcIr' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripxSFcIr debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/8ff871d58769328e371fbc6b3f8159818884f6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyM2y3VQ chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyM2y3VQ cat '/tmp/Isyw8pCKMz/objcopyM2y3VQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyM2y3VQ debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 8cad1dc6d8f8df11eea9981e523dc92051ec3aa3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/ad1dc6d8f8df11eea9981e523dc92051ec3aa3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/ad1dc6d8f8df11eea9981e523dc92051ec3aa3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip1rWCMv debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip1rWCMv cat '/tmp/Isyw8pCKMz/strip1rWCMv' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip1rWCMv debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/ad1dc6d8f8df11eea9981e523dc92051ec3aa3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy4NRMFy chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy4NRMFy cat '/tmp/Isyw8pCKMz/objcopy4NRMFy' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy4NRMFy debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 088e13abca126506cc314be37c5567d947139768 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/8e13abca126506cc314be37c5567d947139768.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/8e13abca126506cc314be37c5567d947139768.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip1IW1M_ debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip1IW1M_ cat '/tmp/Isyw8pCKMz/strip1IW1M_' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip1IW1M_ debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/8e13abca126506cc314be37c5567d947139768.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjK__QN chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyjK__QN cat '/tmp/Isyw8pCKMz/objcopyjK__QN' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyjK__QN debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2b593c1beb39b57c74ddfd8f50623327826f4c5e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/593c1beb39b57c74ddfd8f50623327826f4c5e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/593c1beb39b57c74ddfd8f50623327826f4c5e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripO89_Jo debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripO89_Jo cat '/tmp/Isyw8pCKMz/stripO89_Jo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripO89_Jo debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/593c1beb39b57c74ddfd8f50623327826f4c5e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2iAy7q chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2iAy7q cat '/tmp/Isyw8pCKMz/objcopy2iAy7q' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy2iAy7q debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 0158b891b481048bab0060a05e26978436857713 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/58b891b481048bab0060a05e26978436857713.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/58b891b481048bab0060a05e26978436857713.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripFKsjQL debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripFKsjQL cat '/tmp/Isyw8pCKMz/stripFKsjQL' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripFKsjQL debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/58b891b481048bab0060a05e26978436857713.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyiaWHg3 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyiaWHg3 cat '/tmp/Isyw8pCKMz/objcopyiaWHg3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyiaWHg3 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 53383a97633524dc341520563a6d1993297f6f57 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/383a97633524dc341520563a6d1993297f6f57.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/383a97633524dc341520563a6d1993297f6f57.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripp5cOIQ debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripp5cOIQ cat '/tmp/Isyw8pCKMz/stripp5cOIQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripp5cOIQ debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/383a97633524dc341520563a6d1993297f6f57.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXxY8ci chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyXxY8ci cat '/tmp/Isyw8pCKMz/objcopyXxY8ci' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyXxY8ci debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 446cbffbf291ae333282d5e33aa44b23d4930101 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/6cbffbf291ae333282d5e33aa44b23d4930101.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/6cbffbf291ae333282d5e33aa44b23d4930101.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripeqirgo debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripeqirgo cat '/tmp/Isyw8pCKMz/stripeqirgo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripeqirgo debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/6cbffbf291ae333282d5e33aa44b23d4930101.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyJO2shO chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyJO2shO cat '/tmp/Isyw8pCKMz/objcopyJO2shO' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyJO2shO debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 653d34edc075a52005f55cc992fe6fcacdae18e5 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/3d34edc075a52005f55cc992fe6fcacdae18e5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/3d34edc075a52005f55cc992fe6fcacdae18e5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripmRvvS5 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripmRvvS5 cat '/tmp/Isyw8pCKMz/stripmRvvS5' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripmRvvS5 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/3d34edc075a52005f55cc992fe6fcacdae18e5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQoAKXB chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQoAKXB cat '/tmp/Isyw8pCKMz/objcopyQoAKXB' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyQoAKXB debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 e1b7acb9e4c97d81b5ffaaed8b23a9bd9948b983 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/b7acb9e4c97d81b5ffaaed8b23a9bd9948b983.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/b7acb9e4c97d81b5ffaaed8b23a9bd9948b983.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripibLu_6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripibLu_6 cat '/tmp/Isyw8pCKMz/stripibLu_6' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripibLu_6 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/b7acb9e4c97d81b5ffaaed8b23a9bd9948b983.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQWHxiu chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyQWHxiu cat '/tmp/Isyw8pCKMz/objcopyQWHxiu' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyQWHxiu debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 4e84b135205934ca44c36edd6e60256622449f0a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/84b135205934ca44c36edd6e60256622449f0a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/84b135205934ca44c36edd6e60256622449f0a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripxtpAGn debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripxtpAGn cat '/tmp/Isyw8pCKMz/stripxtpAGn' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripxtpAGn debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4e/84b135205934ca44c36edd6e60256622449f0a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyLA9avE chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyLA9avE cat '/tmp/Isyw8pCKMz/objcopyLA9avE' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyLA9avE debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 830af12d01d58c6c985796ce8a03011d4909cf72 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/0af12d01d58c6c985796ce8a03011d4909cf72.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/0af12d01d58c6c985796ce8a03011d4909cf72.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripum4K3z debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripum4K3z cat '/tmp/Isyw8pCKMz/stripum4K3z' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripum4K3z debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/0af12d01d58c6c985796ce8a03011d4909cf72.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyPea0sD chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyPea0sD cat '/tmp/Isyw8pCKMz/objcopyPea0sD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyPea0sD debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 bae6720a3fcafa8261945b9d3f5544e5e133d73f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ba/e6720a3fcafa8261945b9d3f5544e5e133d73f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ba/e6720a3fcafa8261945b9d3f5544e5e133d73f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripI7ztLQ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripI7ztLQ cat '/tmp/Isyw8pCKMz/stripI7ztLQ' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripI7ztLQ debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ba/e6720a3fcafa8261945b9d3f5544e5e133d73f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy1CArar chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy1CArar cat '/tmp/Isyw8pCKMz/objcopy1CArar' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy1CArar debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 6dc28ee48217c3126c8a4af7f51de8e6ccb78e8f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/c28ee48217c3126c8a4af7f51de8e6ccb78e8f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/c28ee48217c3126c8a4af7f51de8e6ccb78e8f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripJLJihy debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripJLJihy cat '/tmp/Isyw8pCKMz/stripJLJihy' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripJLJihy debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/c28ee48217c3126c8a4af7f51de8e6ccb78e8f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyFoe_46 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyFoe_46 cat '/tmp/Isyw8pCKMz/objcopyFoe_46' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyFoe_46 debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 977c5bba9919fd87dceab57ad20c42116761413a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/7c5bba9919fd87dceab57ad20c42116761413a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/7c5bba9919fd87dceab57ad20c42116761413a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripUeLBy3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripUeLBy3 cat '/tmp/Isyw8pCKMz/stripUeLBy3' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripUeLBy3 debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/7c5bba9919fd87dceab57ad20c42116761413a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTvZ05Z chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyTvZ05Z cat '/tmp/Isyw8pCKMz/objcopyTvZ05Z' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyTvZ05Z debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 b13b9ecb01578d21076614a74a4790a842d86815 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/3b9ecb01578d21076614a74a4790a842d86815.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/3b9ecb01578d21076614a74a4790a842d86815.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripxfYRUy debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripxfYRUy cat '/tmp/Isyw8pCKMz/stripxfYRUy' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripxfYRUy debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b1/3b9ecb01578d21076614a74a4790a842d86815.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyqc9I1t chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyqc9I1t cat '/tmp/Isyw8pCKMz/objcopyqc9I1t' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyqc9I1t debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 899932c28ca7ba7a28807feaa0572ddb7c7c28ae install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/9932c28ca7ba7a28807feaa0572ddb7c7c28ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/9932c28ca7ba7a28807feaa0572ddb7c7c28ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripf5pRVf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripf5pRVf cat '/tmp/Isyw8pCKMz/stripf5pRVf' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripf5pRVf debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/9932c28ca7ba7a28807feaa0572ddb7c7c28ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzB69m4 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzB69m4 cat '/tmp/Isyw8pCKMz/objcopyzB69m4' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyzB69m4 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5e2f9304857d9cee8a2e8d1eebd110df739e9732 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/2f9304857d9cee8a2e8d1eebd110df739e9732.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/2f9304857d9cee8a2e8d1eebd110df739e9732.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripGMZ1xY debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripGMZ1xY cat '/tmp/Isyw8pCKMz/stripGMZ1xY' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripGMZ1xY debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/2f9304857d9cee8a2e8d1eebd110df739e9732.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyaBMdfD chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyaBMdfD cat '/tmp/Isyw8pCKMz/objcopyaBMdfD' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyaBMdfD debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 60d8db266ab72b9cdeeb747e429592853d9899a0 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/d8db266ab72b9cdeeb747e429592853d9899a0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/d8db266ab72b9cdeeb747e429592853d9899a0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripiwkq0V debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripiwkq0V cat '/tmp/Isyw8pCKMz/stripiwkq0V' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripiwkq0V debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/d8db266ab72b9cdeeb747e429592853d9899a0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyck9Hsq chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyck9Hsq cat '/tmp/Isyw8pCKMz/objcopyck9Hsq' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyck9Hsq debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 995bd90dc0c67693bfdb39536664a10a8d98b7b2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/5bd90dc0c67693bfdb39536664a10a8d98b7b2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/5bd90dc0c67693bfdb39536664a10a8d98b7b2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripteuS8p debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripteuS8p cat '/tmp/Isyw8pCKMz/stripteuS8p' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripteuS8p debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/5bd90dc0c67693bfdb39536664a10a8d98b7b2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy9gSvRc chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy9gSvRc cat '/tmp/Isyw8pCKMz/objcopy9gSvRc' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy9gSvRc debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 8e3d07651ba59f2301724c81e4cbd01ae971437e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/3d07651ba59f2301724c81e4cbd01ae971437e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/3d07651ba59f2301724c81e4cbd01ae971437e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripJdRdUo debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripJdRdUo cat '/tmp/Isyw8pCKMz/stripJdRdUo' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripJdRdUo debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8e/3d07651ba59f2301724c81e4cbd01ae971437e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2lOt10 chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopy2lOt10 cat '/tmp/Isyw8pCKMz/objcopy2lOt10' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopy2lOt10 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 deda9e3d57967c2802bb9ea4ab9ced8b35545938 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/da9e3d57967c2802bb9ea4ab9ced8b35545938.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/da9e3d57967c2802bb9ea4ab9ced8b35545938.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripoyOarX debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripoyOarX cat '/tmp/Isyw8pCKMz/stripoyOarX' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripoyOarX debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/da9e3d57967c2802bb9ea4ab9ced8b35545938.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopycEz5mt chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopycEz5mt cat '/tmp/Isyw8pCKMz/objcopycEz5mt' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopycEz5mt debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 c0f03de865b0d2c8177af1b6a8d7ea715738aad3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/f03de865b0d2c8177af1b6a8d7ea715738aad3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/f03de865b0d2c8177af1b6a8d7ea715738aad3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/strip685AbA debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/strip685AbA cat '/tmp/Isyw8pCKMz/strip685AbA' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/strip685AbA debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/f03de865b0d2c8177af1b6a8d7ea715738aad3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopybH3aWz chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopybH3aWz cat '/tmp/Isyw8pCKMz/objcopybH3aWz' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopybH3aWz debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so debugedit: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 901cdca5f844c23501dbf34f6ebff0c41ff14b9a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90/1cdca5f844c23501dbf34f6ebff0c41ff14b9a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90/1cdca5f844c23501dbf34f6ebff0c41ff14b9a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded -o /tmp/Isyw8pCKMz/stripT16Acd debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/stripT16Acd cat '/tmp/Isyw8pCKMz/stripT16Acd' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/stripT16Acd debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/90/1cdca5f844c23501dbf34f6ebff0c41ff14b9a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzAO1iq chmod --reference debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so /tmp/Isyw8pCKMz/objcopyzAO1iq cat '/tmp/Isyw8pCKMz/objcopyzAO1iq' > 'debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so' chmod --reference /tmp/Isyw8pCKMz/objcopyzAO1iq debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy: Unknown DWARF DW_FORM_0x1f21 36b6229f84c6c5154c76e22fca3f3d80e17f5b8b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/b6229f84c6c5154c76e22fca3f3d80e17f5b8b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/b6229f84c6c5154c76e22fca3f3d80e17f5b8b.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripLf4k8X debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy /tmp/Isyw8pCKMz/stripLf4k8X cat '/tmp/Isyw8pCKMz/stripLf4k8X' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy' chmod --reference /tmp/Isyw8pCKMz/stripLf4k8X debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/36/b6229f84c6c5154c76e22fca3f3d80e17f5b8b.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy /tmp/Isyw8pCKMz/objcopyGmLq8t chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy /tmp/Isyw8pCKMz/objcopyGmLq8t cat '/tmp/Isyw8pCKMz/objcopyGmLq8t' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy' chmod --reference /tmp/Isyw8pCKMz/objcopyGmLq8t debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem: Unknown DWARF DW_FORM_0x1f20 edc13fa9237c19fcdfb0dd2eda3fc0471b5eedfb install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/c13fa9237c19fcdfb0dd2eda3fc0471b5eedfb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/c13fa9237c19fcdfb0dd2eda3fc0471b5eedfb.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripAMDLEZ debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem /tmp/Isyw8pCKMz/stripAMDLEZ cat '/tmp/Isyw8pCKMz/stripAMDLEZ' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem' chmod --reference /tmp/Isyw8pCKMz/stripAMDLEZ debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/c13fa9237c19fcdfb0dd2eda3fc0471b5eedfb.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem /tmp/Isyw8pCKMz/objcopyvUWexe chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem /tmp/Isyw8pCKMz/objcopyvUWexe cat '/tmp/Isyw8pCKMz/objcopyvUWexe' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem' chmod --reference /tmp/Isyw8pCKMz/objcopyvUWexe debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens: Unknown DWARF DW_FORM_0x1f21 f5067ce299169bdf920a927ce538d74295a091af install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/067ce299169bdf920a927ce538d74295a091af.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/067ce299169bdf920a927ce538d74295a091af.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/strip14rfez debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens /tmp/Isyw8pCKMz/strip14rfez cat '/tmp/Isyw8pCKMz/strip14rfez' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens' chmod --reference /tmp/Isyw8pCKMz/strip14rfez debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f5/067ce299169bdf920a927ce538d74295a091af.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens /tmp/Isyw8pCKMz/objcopyZ5pnOz chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens /tmp/Isyw8pCKMz/objcopyZ5pnOz cat '/tmp/Isyw8pCKMz/objcopyZ5pnOz' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens' chmod --reference /tmp/Isyw8pCKMz/objcopyZ5pnOz debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation: Unknown DWARF DW_FORM_0x1f21 d4355beebe0ca7fa3561644c1e1c23ab54e97ce9 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/355beebe0ca7fa3561644c1e1c23ab54e97ce9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/355beebe0ca7fa3561644c1e1c23ab54e97ce9.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripxvTKCf debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation /tmp/Isyw8pCKMz/stripxvTKCf cat '/tmp/Isyw8pCKMz/stripxvTKCf' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation' chmod --reference /tmp/Isyw8pCKMz/stripxvTKCf debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/355beebe0ca7fa3561644c1e1c23ab54e97ce9.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation /tmp/Isyw8pCKMz/objcopywIffAs chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation /tmp/Isyw8pCKMz/objcopywIffAs cat '/tmp/Isyw8pCKMz/objcopywIffAs' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation' chmod --reference /tmp/Isyw8pCKMz/objcopywIffAs debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position: Unknown DWARF DW_FORM_0x1f21 1587e5fef8d246806dec097282ee84789957e574 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/87e5fef8d246806dec097282ee84789957e574.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/87e5fef8d246806dec097282ee84789957e574.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/strip1ABtmt debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position /tmp/Isyw8pCKMz/strip1ABtmt cat '/tmp/Isyw8pCKMz/strip1ABtmt' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position' chmod --reference /tmp/Isyw8pCKMz/strip1ABtmt debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/87e5fef8d246806dec097282ee84789957e574.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position /tmp/Isyw8pCKMz/objcopyYUUwKG chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position /tmp/Isyw8pCKMz/objcopyYUUwKG cat '/tmp/Isyw8pCKMz/objcopyYUUwKG' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position' chmod --reference /tmp/Isyw8pCKMz/objcopyYUUwKG debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet: Unknown DWARF DW_FORM_0x1f20 bfd6845e61a24fc1b6a8f1758ce3ad4fbb977d4b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/d6845e61a24fc1b6a8f1758ce3ad4fbb977d4b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/d6845e61a24fc1b6a8f1758ce3ad4fbb977d4b.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/strip7rnjZJ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet /tmp/Isyw8pCKMz/strip7rnjZJ cat '/tmp/Isyw8pCKMz/strip7rnjZJ' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet' chmod --reference /tmp/Isyw8pCKMz/strip7rnjZJ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/d6845e61a24fc1b6a8f1758ce3ad4fbb977d4b.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet /tmp/Isyw8pCKMz/objcopyWNX8Ev chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet /tmp/Isyw8pCKMz/objcopyWNX8Ev cat '/tmp/Isyw8pCKMz/objcopyWNX8Ev' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet' chmod --reference /tmp/Isyw8pCKMz/objcopyWNX8Ev debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3: Unknown DWARF DW_FORM_0x1f21 1b8009959510f90d74f4afa9b75e9b8f955f7df6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/8009959510f90d74f4afa9b75e9b8f955f7df6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/8009959510f90d74f4afa9b75e9b8f955f7df6.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripwK3o2b debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 /tmp/Isyw8pCKMz/stripwK3o2b cat '/tmp/Isyw8pCKMz/stripwK3o2b' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3' chmod --reference /tmp/Isyw8pCKMz/stripwK3o2b debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/8009959510f90d74f4afa9b75e9b8f955f7df6.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 /tmp/Isyw8pCKMz/objcopy9DZssw chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 /tmp/Isyw8pCKMz/objcopy9DZssw cat '/tmp/Isyw8pCKMz/objcopy9DZssw' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3' chmod --reference /tmp/Isyw8pCKMz/objcopy9DZssw debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1: Unknown DWARF DW_FORM_0x1f21 c3962c9b39267820de27ad0c68cd3f3cb468a565 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/962c9b39267820de27ad0c68cd3f3cb468a565.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/962c9b39267820de27ad0c68cd3f3cb468a565.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripb8gwHb debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 /tmp/Isyw8pCKMz/stripb8gwHb cat '/tmp/Isyw8pCKMz/stripb8gwHb' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1' chmod --reference /tmp/Isyw8pCKMz/stripb8gwHb debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/962c9b39267820de27ad0c68cd3f3cb468a565.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 /tmp/Isyw8pCKMz/objcopyHdvZc3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 /tmp/Isyw8pCKMz/objcopyHdvZc3 cat '/tmp/Isyw8pCKMz/objcopyHdvZc3' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1' chmod --reference /tmp/Isyw8pCKMz/objcopyHdvZc3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic: Unknown DWARF DW_FORM_0x1f20 6569648689801ddef549fb8bcc1ca21094a6aa7f install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/69648689801ddef549fb8bcc1ca21094a6aa7f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/69648689801ddef549fb8bcc1ca21094a6aa7f.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/strip72PxOa debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic /tmp/Isyw8pCKMz/strip72PxOa cat '/tmp/Isyw8pCKMz/strip72PxOa' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic' chmod --reference /tmp/Isyw8pCKMz/strip72PxOa debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/69648689801ddef549fb8bcc1ca21094a6aa7f.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic /tmp/Isyw8pCKMz/objcopyFoK89n chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic /tmp/Isyw8pCKMz/objcopyFoK89n cat '/tmp/Isyw8pCKMz/objcopyFoK89n' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic' chmod --reference /tmp/Isyw8pCKMz/objcopyFoK89n debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3: Unknown DWARF DW_FORM_0x1f21 b6498edfb19b3fac108439120329df581f956d49 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/498edfb19b3fac108439120329df581f956d49.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/498edfb19b3fac108439120329df581f956d49.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripRCKN8v debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 /tmp/Isyw8pCKMz/stripRCKN8v cat '/tmp/Isyw8pCKMz/stripRCKN8v' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3' chmod --reference /tmp/Isyw8pCKMz/stripRCKN8v debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/498edfb19b3fac108439120329df581f956d49.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 /tmp/Isyw8pCKMz/objcopy1Lkawf chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 /tmp/Isyw8pCKMz/objcopy1Lkawf cat '/tmp/Isyw8pCKMz/objcopy1Lkawf' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3' chmod --reference /tmp/Isyw8pCKMz/objcopy1Lkawf debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed: Unknown DWARF DW_FORM_0x1f21 1b68e4278f95bd3128b005439edd40279030837c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/68e4278f95bd3128b005439edd40279030837c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/68e4278f95bd3128b005439edd40279030837c.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripfI1KzH debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed /tmp/Isyw8pCKMz/stripfI1KzH cat '/tmp/Isyw8pCKMz/stripfI1KzH' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed' chmod --reference /tmp/Isyw8pCKMz/stripfI1KzH debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/68e4278f95bd3128b005439edd40279030837c.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed /tmp/Isyw8pCKMz/objcopyAZnlIT chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed /tmp/Isyw8pCKMz/objcopyAZnlIT cat '/tmp/Isyw8pCKMz/objcopyAZnlIT' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed' chmod --reference /tmp/Isyw8pCKMz/objcopyAZnlIT debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2: Unknown DWARF DW_FORM_0x1f21 bf7f20bc35d00754e24bfdb51bf865acf7aefeca install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/7f20bc35d00754e24bfdb51bf865acf7aefeca.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/7f20bc35d00754e24bfdb51bf865acf7aefeca.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripWrocI2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 /tmp/Isyw8pCKMz/stripWrocI2 cat '/tmp/Isyw8pCKMz/stripWrocI2' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2' chmod --reference /tmp/Isyw8pCKMz/stripWrocI2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/7f20bc35d00754e24bfdb51bf865acf7aefeca.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 /tmp/Isyw8pCKMz/objcopyrilYF4 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 /tmp/Isyw8pCKMz/objcopyrilYF4 cat '/tmp/Isyw8pCKMz/objcopyrilYF4' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2' chmod --reference /tmp/Isyw8pCKMz/objcopyrilYF4 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors: Unknown DWARF DW_FORM_0x1f20 a200f814c8a788b504521bb9f4689c8b27022510 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/00f814c8a788b504521bb9f4689c8b27022510.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/00f814c8a788b504521bb9f4689c8b27022510.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripivzez6 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors /tmp/Isyw8pCKMz/stripivzez6 cat '/tmp/Isyw8pCKMz/stripivzez6' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors' chmod --reference /tmp/Isyw8pCKMz/stripivzez6 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/00f814c8a788b504521bb9f4689c8b27022510.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors /tmp/Isyw8pCKMz/objcopydSrNRy chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors /tmp/Isyw8pCKMz/objcopydSrNRy cat '/tmp/Isyw8pCKMz/objcopydSrNRy' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors' chmod --reference /tmp/Isyw8pCKMz/objcopydSrNRy debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3: Unknown DWARF DW_FORM_0x1f21 f3a867ee8fa677fbeb5763d604fabb348e53dbd8 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/a867ee8fa677fbeb5763d604fabb348e53dbd8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/a867ee8fa677fbeb5763d604fabb348e53dbd8.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripP9B5AB debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 /tmp/Isyw8pCKMz/stripP9B5AB cat '/tmp/Isyw8pCKMz/stripP9B5AB' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3' chmod --reference /tmp/Isyw8pCKMz/stripP9B5AB debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/a867ee8fa677fbeb5763d604fabb348e53dbd8.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 /tmp/Isyw8pCKMz/objcopynIBtJ5 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 /tmp/Isyw8pCKMz/objcopynIBtJ5 cat '/tmp/Isyw8pCKMz/objcopynIBtJ5' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3' chmod --reference /tmp/Isyw8pCKMz/objcopynIBtJ5 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy: Unknown DWARF DW_FORM_0x1f20 ac3e92ef58687b5b1aa8ee6faf40a1cbbd7ef766 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/3e92ef58687b5b1aa8ee6faf40a1cbbd7ef766.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/3e92ef58687b5b1aa8ee6faf40a1cbbd7ef766.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripr91PNy debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy /tmp/Isyw8pCKMz/stripr91PNy cat '/tmp/Isyw8pCKMz/stripr91PNy' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy' chmod --reference /tmp/Isyw8pCKMz/stripr91PNy debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/3e92ef58687b5b1aa8ee6faf40a1cbbd7ef766.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy /tmp/Isyw8pCKMz/objcopy1ErzJi chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy /tmp/Isyw8pCKMz/objcopy1ErzJi cat '/tmp/Isyw8pCKMz/objcopy1ErzJi' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy' chmod --reference /tmp/Isyw8pCKMz/objcopy1ErzJi debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5: Unknown DWARF DW_FORM_0x1f21 f22ef1527e54ada23eda40b91c9e0da52e7280d2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/2ef1527e54ada23eda40b91c9e0da52e7280d2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/2ef1527e54ada23eda40b91c9e0da52e7280d2.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripdwqFqv debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 /tmp/Isyw8pCKMz/stripdwqFqv cat '/tmp/Isyw8pCKMz/stripdwqFqv' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5' chmod --reference /tmp/Isyw8pCKMz/stripdwqFqv debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/2ef1527e54ada23eda40b91c9e0da52e7280d2.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 /tmp/Isyw8pCKMz/objcopyxwOAay chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 /tmp/Isyw8pCKMz/objcopyxwOAay cat '/tmp/Isyw8pCKMz/objcopyxwOAay' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5' chmod --reference /tmp/Isyw8pCKMz/objcopyxwOAay debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4: Unknown DWARF DW_FORM_0x1f21 b995040c602ed381ce219ffe5556b778933d4764 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9/95040c602ed381ce219ffe5556b778933d4764.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9/95040c602ed381ce219ffe5556b778933d4764.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripsHzdqS debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 /tmp/Isyw8pCKMz/stripsHzdqS cat '/tmp/Isyw8pCKMz/stripsHzdqS' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4' chmod --reference /tmp/Isyw8pCKMz/stripsHzdqS debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b9/95040c602ed381ce219ffe5556b778933d4764.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 /tmp/Isyw8pCKMz/objcopyNg8jZW chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 /tmp/Isyw8pCKMz/objcopyNg8jZW cat '/tmp/Isyw8pCKMz/objcopyNg8jZW' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4' chmod --reference /tmp/Isyw8pCKMz/objcopyNg8jZW debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3: Unknown DWARF DW_FORM_0x1f21 c428420301a7dd7d2b4df1486734bbc1bfd1010c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/28420301a7dd7d2b4df1486734bbc1bfd1010c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/28420301a7dd7d2b4df1486734bbc1bfd1010c.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/striptdrh5V debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 /tmp/Isyw8pCKMz/striptdrh5V cat '/tmp/Isyw8pCKMz/striptdrh5V' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3' chmod --reference /tmp/Isyw8pCKMz/striptdrh5V debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/28420301a7dd7d2b4df1486734bbc1bfd1010c.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 /tmp/Isyw8pCKMz/objcopylCX12M chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 /tmp/Isyw8pCKMz/objcopylCX12M cat '/tmp/Isyw8pCKMz/objcopylCX12M' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3' chmod --reference /tmp/Isyw8pCKMz/objcopylCX12M debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst: Unknown DWARF DW_FORM_0x1f21 ffc2a613b8dee37a91855c7b9a2cc3ea8004e444 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/c2a613b8dee37a91855c7b9a2cc3ea8004e444.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/c2a613b8dee37a91855c7b9a2cc3ea8004e444.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripFT1ODg debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst /tmp/Isyw8pCKMz/stripFT1ODg cat '/tmp/Isyw8pCKMz/stripFT1ODg' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst' chmod --reference /tmp/Isyw8pCKMz/stripFT1ODg debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/c2a613b8dee37a91855c7b9a2cc3ea8004e444.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst /tmp/Isyw8pCKMz/objcopyPx7fFC chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst /tmp/Isyw8pCKMz/objcopyPx7fFC cat '/tmp/Isyw8pCKMz/objcopyPx7fFC' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst' chmod --reference /tmp/Isyw8pCKMz/objcopyPx7fFC debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs: Unknown DWARF DW_FORM_0x1f21 e8f7d1232bc7591628585e3944fcf5d5a8729724 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/f7d1232bc7591628585e3944fcf5d5a8729724.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/f7d1232bc7591628585e3944fcf5d5a8729724.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripnFrbrd debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs /tmp/Isyw8pCKMz/stripnFrbrd cat '/tmp/Isyw8pCKMz/stripnFrbrd' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs' chmod --reference /tmp/Isyw8pCKMz/stripnFrbrd debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/f7d1232bc7591628585e3944fcf5d5a8729724.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs /tmp/Isyw8pCKMz/objcopyo0yu7y chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs /tmp/Isyw8pCKMz/objcopyo0yu7y cat '/tmp/Isyw8pCKMz/objcopyo0yu7y' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs' chmod --reference /tmp/Isyw8pCKMz/objcopyo0yu7y debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256: Unknown DWARF DW_FORM_0x1f21 c21771488dc4608388aedcd6ed4a5e7554653485 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2/1771488dc4608388aedcd6ed4a5e7554653485.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2/1771488dc4608388aedcd6ed4a5e7554653485.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripLOSR11 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 /tmp/Isyw8pCKMz/stripLOSR11 cat '/tmp/Isyw8pCKMz/stripLOSR11' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256' chmod --reference /tmp/Isyw8pCKMz/stripLOSR11 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2/1771488dc4608388aedcd6ed4a5e7554653485.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 /tmp/Isyw8pCKMz/objcopy4H4_ch chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 /tmp/Isyw8pCKMz/objcopy4H4_ch cat '/tmp/Isyw8pCKMz/objcopy4H4_ch' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256' chmod --reference /tmp/Isyw8pCKMz/objcopy4H4_ch debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd: Unknown DWARF DW_FORM_0x1f21 0c97454039a3018e5f3170962dceaab2e788d242 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/97454039a3018e5f3170962dceaab2e788d242.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/97454039a3018e5f3170962dceaab2e788d242.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripkZcPrn debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd /tmp/Isyw8pCKMz/stripkZcPrn cat '/tmp/Isyw8pCKMz/stripkZcPrn' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd' chmod --reference /tmp/Isyw8pCKMz/stripkZcPrn debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0c/97454039a3018e5f3170962dceaab2e788d242.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd /tmp/Isyw8pCKMz/objcopyDey_JO chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd /tmp/Isyw8pCKMz/objcopyDey_JO cat '/tmp/Isyw8pCKMz/objcopyDey_JO' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd' chmod --reference /tmp/Isyw8pCKMz/objcopyDey_JO debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens: Unknown DWARF DW_FORM_0x1f21 edf2383b3223b7908329fad4b06c3f48ba62bd00 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/f2383b3223b7908329fad4b06c3f48ba62bd00.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/f2383b3223b7908329fad4b06c3f48ba62bd00.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripxHMk_u debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens /tmp/Isyw8pCKMz/stripxHMk_u cat '/tmp/Isyw8pCKMz/stripxHMk_u' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens' chmod --reference /tmp/Isyw8pCKMz/stripxHMk_u debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/f2383b3223b7908329fad4b06c3f48ba62bd00.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens /tmp/Isyw8pCKMz/objcopyLGEBIT chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens /tmp/Isyw8pCKMz/objcopyLGEBIT cat '/tmp/Isyw8pCKMz/objcopyLGEBIT' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens' chmod --reference /tmp/Isyw8pCKMz/objcopyLGEBIT debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder: Unknown DWARF DW_FORM_0x1f21 66ed4d5ffd69d7dfd60a8bdce9b9d11a78c58d7c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ed4d5ffd69d7dfd60a8bdce9b9d11a78c58d7c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ed4d5ffd69d7dfd60a8bdce9b9d11a78c58d7c.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/strip3roVXn debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder /tmp/Isyw8pCKMz/strip3roVXn cat '/tmp/Isyw8pCKMz/strip3roVXn' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder' chmod --reference /tmp/Isyw8pCKMz/strip3roVXn debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/ed4d5ffd69d7dfd60a8bdce9b9d11a78c58d7c.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder /tmp/Isyw8pCKMz/objcopyW_0P52 chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder /tmp/Isyw8pCKMz/objcopyW_0P52 cat '/tmp/Isyw8pCKMz/objcopyW_0P52' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder' chmod --reference /tmp/Isyw8pCKMz/objcopyW_0P52 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky: Unknown DWARF DW_FORM_0x1f21 fd5d7b7d86153bfa3b68ecf01544c5154384e7f1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/5d7b7d86153bfa3b68ecf01544c5154384e7f1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/5d7b7d86153bfa3b68ecf01544c5154384e7f1.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripa9ICO8 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky /tmp/Isyw8pCKMz/stripa9ICO8 cat '/tmp/Isyw8pCKMz/stripa9ICO8' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky' chmod --reference /tmp/Isyw8pCKMz/stripa9ICO8 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/5d7b7d86153bfa3b68ecf01544c5154384e7f1.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky /tmp/Isyw8pCKMz/objcopyQ7P0TS chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky /tmp/Isyw8pCKMz/objcopyQ7P0TS cat '/tmp/Isyw8pCKMz/objcopyQ7P0TS' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky' chmod --reference /tmp/Isyw8pCKMz/objcopyQ7P0TS debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debugedit: debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error: Unknown DWARF DW_FORM_0x1f20 607cf7bb6ce2c67bcbec791a5c17ef51b9b5b07e install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/7cf7bb6ce2c67bcbec791a5c17ef51b9b5b07e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/7cf7bb6ce2c67bcbec791a5c17ef51b9b5b07e.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripoz3nAQ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error /tmp/Isyw8pCKMz/stripoz3nAQ cat '/tmp/Isyw8pCKMz/stripoz3nAQ' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error' chmod --reference /tmp/Isyw8pCKMz/stripoz3nAQ debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/7cf7bb6ce2c67bcbec791a5c17ef51b9b5b07e.debug debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error /tmp/Isyw8pCKMz/objcopyHTg_3u chmod --reference debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error /tmp/Isyw8pCKMz/objcopyHTg_3u cat '/tmp/Isyw8pCKMz/objcopyHTg_3u' > 'debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error' chmod --reference /tmp/Isyw8pCKMz/objcopyHTg_3u debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debugedit: debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites: Unknown DWARF DW_FORM_0x1f21 e427406cfd3ee54ec2699c971ba9a60730dd6d82 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/27406cfd3ee54ec2699c971ba9a60730dd6d82.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/27406cfd3ee54ec2699c971ba9a60730dd6d82.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripsQ6HEN debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites chmod --reference debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites /tmp/Isyw8pCKMz/stripsQ6HEN cat '/tmp/Isyw8pCKMz/stripsQ6HEN' > 'debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites' chmod --reference /tmp/Isyw8pCKMz/stripsQ6HEN debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/27406cfd3ee54ec2699c971ba9a60730dd6d82.debug debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites /tmp/Isyw8pCKMz/objcopyZvasR2 chmod --reference debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites /tmp/Isyw8pCKMz/objcopyZvasR2 cat '/tmp/Isyw8pCKMz/objcopyZvasR2' > 'debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites' chmod --reference /tmp/Isyw8pCKMz/objcopyZvasR2 debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cbflib.tst_memory debugedit: debian/python3-cctbx/usr/bin/cbflib.tst_memory: Unknown DWARF DW_FORM_0x1f21 1df347a71f3cdbcb9b8bb42cc5e65754af580d7b install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/f347a71f3cdbcb9b8bb42cc5e65754af580d7b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/f347a71f3cdbcb9b8bb42cc5e65754af580d7b.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/strippJx_Iz debian/python3-cctbx/usr/bin/cbflib.tst_memory chmod --reference debian/python3-cctbx/usr/bin/cbflib.tst_memory /tmp/Isyw8pCKMz/strippJx_Iz cat '/tmp/Isyw8pCKMz/strippJx_Iz' > 'debian/python3-cctbx/usr/bin/cbflib.tst_memory' chmod --reference /tmp/Isyw8pCKMz/strippJx_Iz debian/python3-cctbx/usr/bin/cbflib.tst_memory objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/f347a71f3cdbcb9b8bb42cc5e65754af580d7b.debug debian/python3-cctbx/usr/bin/cbflib.tst_memory /tmp/Isyw8pCKMz/objcopy0T1NL3 chmod --reference debian/python3-cctbx/usr/bin/cbflib.tst_memory /tmp/Isyw8pCKMz/objcopy0T1NL3 cat '/tmp/Isyw8pCKMz/objcopy0T1NL3' > 'debian/python3-cctbx/usr/bin/cbflib.tst_memory' chmod --reference /tmp/Isyw8pCKMz/objcopy0T1NL3 debian/python3-cctbx/usr/bin/cbflib.tst_memory debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debugedit: debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib: Unknown DWARF DW_FORM_0x1f20 a11e4caebd71b703c12529697af6bee0f5caa07a install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/1e4caebd71b703c12529697af6bee0f5caa07a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/1e4caebd71b703c12529697af6bee0f5caa07a.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripIxIDb9 debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib chmod --reference debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib /tmp/Isyw8pCKMz/stripIxIDb9 cat '/tmp/Isyw8pCKMz/stripIxIDb9' > 'debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib' chmod --reference /tmp/Isyw8pCKMz/stripIxIDb9 debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/1e4caebd71b703c12529697af6bee0f5caa07a.debug debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib /tmp/Isyw8pCKMz/objcopyxD5y_A chmod --reference debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib /tmp/Isyw8pCKMz/objcopyxD5y_A cat '/tmp/Isyw8pCKMz/objcopyxD5y_A' > 'debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib' chmod --reference /tmp/Isyw8pCKMz/objcopyxD5y_A debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debugedit: debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry: Unknown DWARF DW_FORM_0x1f21 f4136333b7fde93f54049d0c7c592ecee63ebe9d install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/136333b7fde93f54049d0c7c592ecee63ebe9d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/136333b7fde93f54049d0c7c592ecee63ebe9d.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripEky93r debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry chmod --reference debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry /tmp/Isyw8pCKMz/stripEky93r cat '/tmp/Isyw8pCKMz/stripEky93r' > 'debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry' chmod --reference /tmp/Isyw8pCKMz/stripEky93r debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/136333b7fde93f54049d0c7c592ecee63ebe9d.debug debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry /tmp/Isyw8pCKMz/objcopyUv8jSR chmod --reference debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry /tmp/Isyw8pCKMz/objcopyUv8jSR cat '/tmp/Isyw8pCKMz/objcopyUv8jSR' > 'debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry' chmod --reference /tmp/Isyw8pCKMz/objcopyUv8jSR debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cctbx.getting_started debugedit: debian/python3-cctbx/usr/bin/cctbx.getting_started: Unknown DWARF DW_FORM_0x1f21 cadc7cf0a0c180e4d950290f84f685d94d9effe6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.getting_started debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/dc7cf0a0c180e4d950290f84f685d94d9effe6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/dc7cf0a0c180e4d950290f84f685d94d9effe6.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripEXitff debian/python3-cctbx/usr/bin/cctbx.getting_started chmod --reference debian/python3-cctbx/usr/bin/cctbx.getting_started /tmp/Isyw8pCKMz/stripEXitff cat '/tmp/Isyw8pCKMz/stripEXitff' > 'debian/python3-cctbx/usr/bin/cctbx.getting_started' chmod --reference /tmp/Isyw8pCKMz/stripEXitff debian/python3-cctbx/usr/bin/cctbx.getting_started objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/dc7cf0a0c180e4d950290f84f685d94d9effe6.debug debian/python3-cctbx/usr/bin/cctbx.getting_started /tmp/Isyw8pCKMz/objcopyPVQSj3 chmod --reference debian/python3-cctbx/usr/bin/cctbx.getting_started /tmp/Isyw8pCKMz/objcopyPVQSj3 cat '/tmp/Isyw8pCKMz/objcopyPVQSj3' > 'debian/python3-cctbx/usr/bin/cctbx.getting_started' chmod --reference /tmp/Isyw8pCKMz/objcopyPVQSj3 debian/python3-cctbx/usr/bin/cctbx.getting_started debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cctbx.find_distances debugedit: debian/python3-cctbx/usr/bin/cctbx.find_distances: Unknown DWARF DW_FORM_0x1f21 1b36d057d7dc2aa0e0d535bf90c921da0eb417e6 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.find_distances debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/36d057d7dc2aa0e0d535bf90c921da0eb417e6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/36d057d7dc2aa0e0d535bf90c921da0eb417e6.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/striplEr8h8 debian/python3-cctbx/usr/bin/cctbx.find_distances chmod --reference debian/python3-cctbx/usr/bin/cctbx.find_distances /tmp/Isyw8pCKMz/striplEr8h8 cat '/tmp/Isyw8pCKMz/striplEr8h8' > 'debian/python3-cctbx/usr/bin/cctbx.find_distances' chmod --reference /tmp/Isyw8pCKMz/striplEr8h8 debian/python3-cctbx/usr/bin/cctbx.find_distances objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/36d057d7dc2aa0e0d535bf90c921da0eb417e6.debug debian/python3-cctbx/usr/bin/cctbx.find_distances /tmp/Isyw8pCKMz/objcopyLdsTOr chmod --reference debian/python3-cctbx/usr/bin/cctbx.find_distances /tmp/Isyw8pCKMz/objcopyLdsTOr cat '/tmp/Isyw8pCKMz/objcopyLdsTOr' > 'debian/python3-cctbx/usr/bin/cctbx.find_distances' chmod --reference /tmp/Isyw8pCKMz/objcopyLdsTOr debian/python3-cctbx/usr/bin/cctbx.find_distances debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debugedit: debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups: Unknown DWARF DW_FORM_0x1f20 b7580609d217ff4cfe12395666fc1795fe04224c install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/580609d217ff4cfe12395666fc1795fe04224c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/580609d217ff4cfe12395666fc1795fe04224c.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripV3kihD debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups chmod --reference debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups /tmp/Isyw8pCKMz/stripV3kihD cat '/tmp/Isyw8pCKMz/stripV3kihD' > 'debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups' chmod --reference /tmp/Isyw8pCKMz/stripV3kihD debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/580609d217ff4cfe12395666fc1795fe04224c.debug debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups /tmp/Isyw8pCKMz/objcopyjRp4Of chmod --reference debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups /tmp/Isyw8pCKMz/objcopyjRp4Of cat '/tmp/Isyw8pCKMz/objcopyjRp4Of' > 'debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups' chmod --reference /tmp/Isyw8pCKMz/objcopyjRp4Of debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debugedit --build-id --build-id-seed=python3-cctbx/2023.12\+ds2\+\~3.17.0\+ds1-4build2 debian/python3-cctbx/usr/bin/cctbx_blobs debugedit: debian/python3-cctbx/usr/bin/cctbx_blobs: Unknown DWARF DW_FORM_0x1f21 01bfbee056544f9bfb0391d96bb58ef63b26e656 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/bin/cctbx_blobs debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/bfbee056544f9bfb0391d96bb58ef63b26e656.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/bfbee056544f9bfb0391d96bb58ef63b26e656.debug strip --remove-section=.comment --remove-section=.note -o /tmp/Isyw8pCKMz/stripSbuJb2 debian/python3-cctbx/usr/bin/cctbx_blobs chmod --reference debian/python3-cctbx/usr/bin/cctbx_blobs /tmp/Isyw8pCKMz/stripSbuJb2 cat '/tmp/Isyw8pCKMz/stripSbuJb2' > 'debian/python3-cctbx/usr/bin/cctbx_blobs' chmod --reference /tmp/Isyw8pCKMz/stripSbuJb2 debian/python3-cctbx/usr/bin/cctbx_blobs objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/01/bfbee056544f9bfb0391d96bb58ef63b26e656.debug debian/python3-cctbx/usr/bin/cctbx_blobs /tmp/Isyw8pCKMz/objcopyQsOOqG chmod --reference debian/python3-cctbx/usr/bin/cctbx_blobs /tmp/Isyw8pCKMz/objcopyQsOOqG cat '/tmp/Isyw8pCKMz/objcopyQsOOqG' > 'debian/python3-cctbx/usr/bin/cctbx_blobs' chmod --reference /tmp/Isyw8pCKMz/objcopyQsOOqG debian/python3-cctbx/usr/bin/cctbx_blobs install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cctbx/usr/lib/debug/.dwz/riscv64-linux-gnu debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cctbx/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cctbx/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc ln -s python3-cctbx debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc/python3-cctbx-dbgsym install -m0755 -d debian/.debhelper/python3-cctbx dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libcctbx0/DEBIAN/shlibs install -m0755 -d debian/libcctbx0/DEBIAN echo "libann_adaptor 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libasymmetric_map 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcbf-private 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libccp4io 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx_sgtbx_asu 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libdxtbxspotfinder 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_mtz 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_pdb 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_xplor 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_masks 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_tls 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libomptbx 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "librstbx 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_boost_python 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_minpack 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_slatec 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libsmtbx_refinement_constraints 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libspotfinder 0 libcctbx0 (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs chmod 0644 -- debian/libcctbx0/DEBIAN/shlibs mv debian/.debhelper/generated/libcctbx0/triggers.new debian/.debhelper/generated/libcctbx0/triggers rm -f debian/libcctbx-dev/DEBIAN/shlibs rm -f debian/python3-cctbx/DEBIAN/shlibs install -m0755 -d debian/python3-cctbx/DEBIAN echo "annlib_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_boost_thread_test_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_breadth_first_search_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_clustering_algorithm_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_connected_component_algorithm_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_graph_structure_comparison_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_maximum_clique_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_metric_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_min_cut_max_flow_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_graph_utility_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_adaptbx_python_streambuf_test_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_optional_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_python_hybrid_times_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_python_meta_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_rational_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "boost_tuple_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cbflib_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "ccp4io_adaptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_adp_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_adptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_anharmonic_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_asymmetric_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_covariance_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_crystal_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_dmtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_attenuation_coefficient_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_chemical_elements_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_covalent_radii_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_fp_fdp_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_henke_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_icsd_radii_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_neutron_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_sasaki_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_tiny_pse_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_wavelengths_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_eltbx_xray_scattering_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_emma_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_french_wilson_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_geometry_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_geometry_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_maptbx_bcr_bcr_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_maptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_masks_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_math_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_merging_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_miller_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_multipolar_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_orientation_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_sgtbx_asu_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_sgtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_statistics_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_symmetry_search_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_translation_search_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_uctbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_xray_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cctbx_xray_observations_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "cma_es_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "determine_unit_cell_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_flumpy 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_format_image_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_format_nexus_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_imageset_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_masking_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "dxtbx_model_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "fable_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_fonts_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_gl_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_glu_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_quadrics_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_util_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "gltbx_viewer_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_ccp4_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_cif_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_detectors_bruker_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_detectors_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_dsn6_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_dtrek_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_mtz_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_pdb_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_pdb_hierarchy_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_scalepack_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_shelx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_wildcard_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "iotbx_xplor_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_alignment_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_building_loop_closure_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_bulk_solvent_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_cablam_align_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_den_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_dssp_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_dynamics_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_f_model_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_asa_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_clash_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_indexing_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_primitive_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_shared_types_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_geometry_sphere_surface_sampling_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_hydrogens_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_masks_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_max_lik_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_mosaic_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_ncs_cartesian_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_ncs_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_pair_interaction_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_probe_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_ramachandran_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_reduce_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_reference_coordinate_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_rotamer_fit_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_rsr_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_scaling_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_secondary_structure_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_decompose_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_optimise_amplitudes_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_tls_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "mmtbx_validation_ramachandran_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "omptbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "regression_test_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_bandpass_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_bpcx_detector_model_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_diffraction_fastbragg_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_indexing_api_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_integration_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_simage_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_simulation_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "rstbx_symmetry_constraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_array_family_shared_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_cubicle_neighbors_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_fftpack_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_glmtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_graphics_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_iso_surface_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_lbfgs_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_lbfgsb_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_linalg_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_lstbx_normal_equations_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_math_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_minpack_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_r3_utils_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_random_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_rigid_body_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_sparse_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_stl_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_stl_set_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_stl_vector_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_suffixtree_shared_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_suffixtree_single_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "scitbx_wigner_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_ab_initio_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_array_family_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_refinement_constraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_refinement_least_squares_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_refinement_restraints_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_stl_map_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "smtbx_structure_factors_direct_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_array_family_flex_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_distltbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_dxtbx_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "spotfinder_hough_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs echo "std_pair_ext 0 python3-cctbx (>= 2023.12+ds2+~3.17.0+ds1)" >> debian/python3-cctbx/DEBIAN/shlibs chmod 0644 -- debian/python3-cctbx/DEBIAN/shlibs mv debian/.debhelper/generated/python3-cctbx/triggers.new debian/.debhelper/generated/python3-cctbx/triggers dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN dpkg-shlibdeps -Tdebian/libcctbx0.substvars debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged install -m0755 -d debian/python3-cctbx/DEBIAN dpkg-shlibdeps -Tdebian/python3-cctbx.substvars debian/python3-cctbx/usr/lib/cctbx/python3.12/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.12/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.12/scitbx/error/tst_error debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyImport_AddModule: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_Type: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsTrue: it's probably a plugin dpkg-shlibdeps: warning: 31 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyGILState_Check: it's probably a plugin dpkg-shlibdeps: warning: 124 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it's probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it's probably a plugin dpkg-shlibdeps: warning: 26 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_AsLong: it's probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it's probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it's probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyType_IsSubtype: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_cablam_align_utils_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_FromDoubles: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it's probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it's probably a plugin dpkg-shlibdeps: warning: 33 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyImport_AddModule: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it's probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyList_New: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyExc_ZeroDivisionError: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyImport_ImportModule: it's probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyCapsule_New: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it's probably a plugin dpkg-shlibdeps: warning: 49 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it's probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it's probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_Size: it's probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it's probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it's probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-312-riscv64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it's probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -p -m0644 debian/.debhelper/generated/libcctbx0/triggers debian/libcctbx0/DEBIAN/triggers install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/postinst cat debian/python3-cctbx.postinst.debhelper >> debian/python3-cctbx/DEBIAN/postinst chmod 0755 -- debian/python3-cctbx/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/prerm cat debian/python3-cctbx.prerm.debhelper >> debian/python3-cctbx/DEBIAN/prerm chmod 0755 -- debian/python3-cctbx/DEBIAN/prerm install -p -m0644 debian/.debhelper/generated/python3-cctbx/triggers debian/python3-cctbx/DEBIAN/triggers dh_numpy3 -a -O--buildsystem=pybuild mv debian/libcctbx0.substvars.new debian/libcctbx0.substvars mv debian/libcctbx-dev.substvars.new debian/libcctbx-dev.substvars mv debian/python3-cctbx.substvars.new debian/python3-cctbx.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN echo misc:Depends= >> debian/libcctbx0.substvars echo misc:Pre-Depends= >> debian/libcctbx0.substvars install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -Pdebian/.debhelper/libcctbx0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcctbx0-dbgsym "-DDepends=libcctbx0 (= \${binary:Version})" "-DDescription=debug symbols for libcctbx0" "-DBuild-Ids=3b91bb041af712f69ec5f750a8a9e91f163649a6 3c6136a908dcb6d329327614282d57f920d1cacb 4499729fee6dd7081cca07b77216d3764ffdf3fc 68e7c23d445bdbe26dad92cfb49583ce7af032ef 72a0fdef06d6b2e4d0f1102615151c546d8cc6f3 8132bde40662dbeb35803fa871093eb33e6a10fe 8165569c6c5a056c9f1a9b12908088fcf7db4f07 81a1f14027155de255abca459275ca33832a1ee4 859da5b4ebf91636924374ce01032406993f5a11 863d7223590dbf1421bead828d2c62b5b611ed02 8fbb432ce20853cb65bca2828a1a4e73d0ff5932 a93c43b7ad6bbbe2e1a6f587a6f15343a04a0762 b05dfbb2fede1c4fe7b8e13f18e49d93428cd39b c2a1b9d0c8c1c53b13f6df6bbd74e6c436954c34 ce59d703ffe02f835c7e1af9c916f1a05b0991ff e861ff41f5f8528b5d7d6290aa5cc14d41452222 ef51f780254f301fa8a939d7a5e59e353a7e2d2e f19346e2185afbe9249e6d0f0c45d95c3c0d57e7 fd2991a342a82f5da0fc05ded4fe3ec82265fcf3" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libcctbx-dev/DEBIAN echo misc:Depends= >> debian/libcctbx-dev.substvars echo misc:Pre-Depends= >> debian/libcctbx-dev.substvars dpkg-gencontrol -plibcctbx-dev -ldebian/changelog -Tdebian/libcctbx-dev.substvars -Pdebian/libcctbx-dev install -m0755 -d debian/python3-cctbx/DEBIAN echo misc:Depends= >> debian/python3-cctbx.substvars echo misc:Pre-Depends= >> debian/python3-cctbx.substvars install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -Pdebian/.debhelper/python3-cctbx/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cctbx-dbgsym "-DDepends=python3-cctbx (= \${binary:Version})" "-DDescription=debug symbols for python3-cctbx" "-DBuild-Ids=0158b891b481048bab0060a05e26978436857713 01a9aeedb7a79f56e858aa23218a38a0d63afb20 01bfbee056544f9bfb0391d96bb58ef63b26e656 01c85c11302064685cfce8a8dd3eb65453909099 0334586911a4ff134b569f121336d9dd09f2e42c 03655e1baddc079e3c4bff97911deac601306510 04fe7c06272d1895400c272799011d708c00c438 088e13abca126506cc314be37c5567d947139768 0902fb7d73cbae77aa803f11ea03c79d5ff1c974 0ab3a1cc3f3f46c359dbd43fe8112b0a35a1252d 0c66618a82bafda33c20e78fd62a5c839f8d1097 0c97454039a3018e5f3170962dceaab2e788d242 0ca743a66ddaf6cc61afa1243989705e3baaa60a 0e756569ec23487f9c47d8091fd27b854d150b05 0edd1a38d2e46e31edb0a1bce1be02768a21420c 106501774fe0addde02377e4f5a09c55b9ff29ae 1587e5fef8d246806dec097282ee84789957e574 15c58a6a9cc82f74912b6dce366172338e460272 175d095e1642c253d4e1bcd17025498428792895 17b5bcb479875c812f5f5389c4aa2671e294a196 19523fbbebb7fa4e0be4e614fbae91ba8d3c1a96 1b2a2b5bc5ece72afe880ff4cf02047e88a4e778 1b36d057d7dc2aa0e0d535bf90c921da0eb417e6 1b68e4278f95bd3128b005439edd40279030837c 1b8009959510f90d74f4afa9b75e9b8f955f7df6 1df347a71f3cdbcb9b8bb42cc5e65754af580d7b 1eeb065bc4da4d64f336e2b04ad7dc2d9d9595b0 1fbb9880050c4351011e2a857e0149a0507a1bb3 1ff9c770f1291fe0013f308714357d4fd474a006 2419f5b19372009a0227a1680e699f599f530433 248e1c8ea32a603b2a99387c4737bebb78f4697d 250fd02614968543921867a5e7ed778d29651e37 2621712bfa674e539bb83db3020a285985d884d9 27ca9eb8b4a98bbb8fd1efb580b7d25088af2d64 283dab1cc59aa0fe59fcd2ef44b9c25dcc02ac1b 28d0da044d6c25f5a20fd51c78aa0f2ac4cfe57e 297399a1172a6ba2a93aca58826c6efc7c7a97c0 29edbd4f45ebdffc17e7220502ee53cc2f7124a3 2b593c1beb39b57c74ddfd8f50623327826f4c5e 2e0b7f367f2884b65ac5a7c70cb777f5609e2ce8 2eadc3cdff784d53bf86cf93aa0a3e209cd06fc4 3060fa6bfe87a89bfdb523c27d4251cdfee4508d 323d83f1cf3d5f40830648e5dc287ee168132c47 33166fea980fea4c9cf78bf24129e5ab087bc498 339044bf37abeaa3624d573deffadfe1f7ade399 361202e90af818d4faf8df771884bf782dba958b 36b6229f84c6c5154c76e22fca3f3d80e17f5b8b 3ce8c415fdff27d0f51b1951b4b7ee3382791f4c 3ec0fd52677a5aeb6da327d1b065533f378d994b 3f899329fc64f1e0da0afd04c645746de8db1a52 406709572a54c50e43ea7644f45e42b557b66dbb 410117f903d3038ccde1e1de24ae6426ff4c32de 443d9bca6aead5c4b5cfd383f089ce5adb3d8f9d 446a781c9516ee82714636df8c31d35db05aad4c 446cbffbf291ae333282d5e33aa44b23d4930101 44dbd7e0d8e9db3a6747f7f7762d3e415ba3eb0e 47f2529442495531215753d3e74a33a7e03bd3b1 47fe0711ea44bafb12df64d1cb1b2d85e3eae41c 491bfd82cd9b318052feb394f0eae63d454aaf00 4a9bb83e1706577edbbd12c23b0e0966631d0ee6 4ac9e96c9685cfd75677e16138e707b5772d31ab 4c7ba5ac049a70ae748ca41c38f0de38b831341b 4ca3daefb400a47a2ee34f212c169974c76aa129 4cc958f8ab6be72eb6a2458ccee9072ee2ed3e2e 4daf0ef89296ca19917a12f42760a4ba77c093db 4e84b135205934ca44c36edd6e60256622449f0a 4f544dffec4bb877d3f0148647e40ccd76b6f757 5160c9692724bc971889d7f9e803cb6911b22bc9 523529a935bf7b45c57f8f1ba463eb0e0f1596c0 53383a97633524dc341520563a6d1993297f6f57 556764be01781ad3e9ee0f2c8cb2046ae7915d57 58655d28ac4b0a56078cc872a015d0d1b559965f 58a4514af233fcdc966c2aa50bc66047eb045379 58cc7297cae4bb9d997fe85abaaefc08e69c4c3a 59204936ef4fe7ce2074ef6f7154651fbc8585b6 59c3a454bdf242d07ed3d6a83905a8c3e60bfe8e 5a3b96b898cb92ed4409f413bd6e580d8b927868 5b175529939a32bc5fdd953033f1214b58b06037 5e2f9304857d9cee8a2e8d1eebd110df739e9732 5e707ff8cb685ea6c47d7f547e8ba21f3b9395e2 5fdac873caca42fdad0ac2ef368a4266c189668c 607cf7bb6ce2c67bcbec791a5c17ef51b9b5b07e 608ff871d58769328e371fbc6b3f8159818884f6 60d8db266ab72b9cdeeb747e429592853d9899a0 61e7f35cb39f1c68732302afa88e6f18947b236e 653d34edc075a52005f55cc992fe6fcacdae18e5 6569648689801ddef549fb8bcc1ca21094a6aa7f 66ed4d5ffd69d7dfd60a8bdce9b9d11a78c58d7c 6b4054dac835fad527ec6487e3b488184ec1aef6 6c10489aad81cadda96651cc03268dc5abfbe6d7 6d43c6047bd10f37f9d190386ccdbece278c58f1 6dc28ee48217c3126c8a4af7f51de8e6ccb78e8f 6fab4cf99ebf943613168fa43008ed7597c88f85 75be0be175177c1e25bc43d767220e835255880a 78862c4d8609ce707c48c90c21ebdff5aaa68ed6 78e0f07d5b71f66741bb3d06ad5fda86d2bd7c61 7a356f9e15d21e72a398a8d193d823aebb19edae 7b986ad644ef3d738905c24905aefb3081e91d73 7bd4d53316f4ea8b90d083233c9766129e8d6756 830af12d01d58c6c985796ce8a03011d4909cf72 835faa6269e4a7fe63405fe1698fafcf277b65ec 845a4e8226f8bfd74b83cea857ed5f9742c87bc5 85dc4c4866d9910a6abfc11dde98735d52caee66 862f29dfa180eaeb8347751076a3679900209a47 87be45cca3b2d6a08e83b09f95f0e9cfe12c2e14 87e7428827b06b224a84a640d829aa1ecb782e8d 899932c28ca7ba7a28807feaa0572ddb7c7c28ae 89dd5b3d4c68baa70687aba3987a217d611e92e8 8af995395b527bf6563c729f63e9bffc8a11bc46 8cad1dc6d8f8df11eea9981e523dc92051ec3aa3 8d17d8fe65bf31c35b47567b3aabfedce9528da5 8e3d07651ba59f2301724c81e4cbd01ae971437e 8ed363bc5de9577bab49626efc9babce3db9f19c 901cdca5f844c23501dbf34f6ebff0c41ff14b9a 977c5bba9919fd87dceab57ad20c42116761413a 97aa501538737771d7276d7c6958e9c16a3ee4f7 995bd90dc0c67693bfdb39536664a10a8d98b7b2 99938e2ec6c2f93649f3373cf814852b70d88b9e 99fd8e01f8ae86b5ee8e3d864d55e5785928793c 9abe6317ec961d397acbd1641f67510617786ee6 9acf9ee9af18a9d4225e611233d6a6fe80a07df0 9b5400272d84ca25ebd59b83228c6716025ec740 9b89e8b656609251142a2ba4b0d33a7acdf8eea9 9cf52ff98e7dfaee1298aecc1224a59a20e3729a 9e2ec35d400bd72933132884ef8e86c599d8f98d 9f22679df1fb3a0558c5bd315d622aeb1b64fa03 a11e4caebd71b703c12529697af6bee0f5caa07a a200f814c8a788b504521bb9f4689c8b27022510 a3ec2123555b4d23a17f9ef7849867cebbd009cd a4f961f68a2c76912e63301ba5adce5b67ca78e3 a59bdb3439860b0f6e1385ceef713d2a4123f155 a60500692f791b50202679fa32aea9af97994931 a6f5518b2f8e099a2c1a64ecfb918225c332b2fe a6fb64ab99ae9ce0e72da088a4ef8be8a7abaebf a7e79c96dc5dab6107b5b1b15f8a30456d3b7ef0 a83543a397bb7e6752dbb1f720c831680ff52f21 a92fdca5171b9bf5f417591719912e1a402a96c9 a9ded91831ff7282288495702024f1845ca4dc01 ac3e92ef58687b5b1aa8ee6faf40a1cbbd7ef766 ade672ac5bb33b434c5a4738497803a230a44580 ae4e1a554dfed639f9544c4af798002d36e2b441 af3327bcee351e970c30b1067518ff0c7afb3ce6 b0f5760df8c71b646cf6a47bed8ed3fd4ec0cdef b13b9ecb01578d21076614a74a4790a842d86815 b3767497e44b73fd852385c9b1652d4a508fe6e4 b49dc2b19a525cd39ce3ea7438b488ff398e287c b6498edfb19b3fac108439120329df581f956d49 b7580609d217ff4cfe12395666fc1795fe04224c b7bb4ab9f39f58bd482f8d4a7568b6262bf1c77e b7f3975edfbecd2e137587d5b71e5f8f89df0b4b b89ad0ccb2d8af89a67671b0cbbca8a4b61ffa1c b995040c602ed381ce219ffe5556b778933d4764 bae6720a3fcafa8261945b9d3f5544e5e133d73f bdcab0eeca31e0a0b399c6b83ee0ea7de8f9678e bdcfaab84b0c6d12905527b4374f08e9463b841b bf7f20bc35d00754e24bfdb51bf865acf7aefeca bfd6845e61a24fc1b6a8f1758ce3ad4fbb977d4b c0f03de865b0d2c8177af1b6a8d7ea715738aad3 c16614c7efdb009cb6a423e8d1cef9bc2e161c38 c21771488dc4608388aedcd6ed4a5e7554653485 c3962c9b39267820de27ad0c68cd3f3cb468a565 c428420301a7dd7d2b4df1486734bbc1bfd1010c c5745bec5e2ab9e819969e8d18a374e8bda6a337 c7c0f0175889cba48e3dce939e5a72638b16ca21 c80a670cbbb6d2f4790d575427a03a41e559c992 c82f6adf5a7694e8d8e823eb99232447a9729788 cadc7cf0a0c180e4d950290f84f685d94d9effe6 cba50cd3dadebcae974f0ac32700f299684f8663 cc10bb88a2f33b9dbd2e37220f1b6ac596200334 cc27a5c59025943ae4c4eb8af1d7eb7456b0fa33 cef5217498373ae3b4180f53dc83e882b2608dec d0bc94747673efb50e3ccc6ea44a4669ad6076f7 d4355beebe0ca7fa3561644c1e1c23ab54e97ce9 d439d621d4552e04bf7d58306d78441d4120132d d5b56d37978e13496ed46313ab0dd0820940a98a d7b97b7828552638702ee7dff9e52efab9ab530b d8dbab40f3f0822886adc54503b62f6dd4d72934 d98c1e4657fb7c8bd1bcc4b874c267a456830d31 db9e66bcde231d8537f12b9965f001714c7e2950 deda9e3d57967c2802bb9ea4ab9ced8b35545938 e17ab1268ffb94931110d899da0f1b33f542f039 e1b7acb9e4c97d81b5ffaaed8b23a9bd9948b983 e1f2962ef5409aabfedd6e5b2790ec341314d095 e385bb7c172e89ab40b83b064d78e1963693cc2a e427406cfd3ee54ec2699c971ba9a60730dd6d82 e543adf3dd85843c39731bad61f3b77c577acadc e5c85ebd858cd7c1554e34195c9dbf725a836261 e5db9e9220fab10fdf0a87213f89b73cd8f422b0 e7d0293cbdec7d724edf8e4a32db13323cd85c1d e8f7d1232bc7591628585e3944fcf5d5a8729724 ea0eca96ee4231c2c917f2874df4918fabcfce58 edc13fa9237c19fcdfb0dd2eda3fc0471b5eedfb edf2383b3223b7908329fad4b06c3f48ba62bd00 ee12aae7cb0a3f8e3ea9076ac5c4a01af5f49c21 f0ce3d226056a6038332fc86ef95f7731d5ce0d4 f22ef1527e54ada23eda40b91c9e0da52e7280d2 f3a867ee8fa677fbeb5763d604fabb348e53dbd8 f4136333b7fde93f54049d0c7c592ecee63ebe9d f5067ce299169bdf920a927ce538d74295a091af f537c28bea89a4515973e122f22f3d2bc7154f6c fc6e9d4d8800bac70c833e71a98d8f3ea9d84afc fd5d7b7d86153bfa3b68ecf01544c5154384e7f1 ffc2a613b8dee37a91855c7b9a2cc3ea8004e444" -DSection=debug -DPackage-Type=ddeb -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package libcctbx0: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -Pdebian/libcctbx0 dpkg-gencontrol: warning: package libcctbx-dev: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/libcctbx-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -Pdebian/python3-cctbx dpkg-gencontrol: warning: package libcctbx0: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/libcctbx0/DEBIAN/control chmod 0644 -- debian/python3-cctbx/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN install -m0755 -d debian/libcctbx-dev/DEBIAN cd debian/libcctbx0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcctbx-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx0/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN cd debian/.debhelper/libcctbx0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-cctbx >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/libcctbx-dev/DEBIAN/md5sums chmod 0644 -- debian/python3-cctbx/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cctbx/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libcctbx0 .. dpkg-deb --root-owner-group --build debian/libcctbx-dev .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cctbx/dbgsym-root debian/.debhelper/scratch-space/build-python3-cctbx INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing libcctbx0 (in debian/libcctbx0); do_strip: , oemstrip: pkgstriptranslations: processing python3-cctbx-dbgsym (in debian/.debhelper/python3-cctbx/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libcctbx-dev (in debian/libcctbx-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libcctbx0/DEBIAN/control, package libcctbx0, directory debian/libcctbx0 pkgstripfiles: Truncating usr/share/doc/libcctbx0/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcctbx0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb'. pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control, package python3-cctbx-dbgsym, directory debian/.debhelper/python3-cctbx/dbgsym-root dpkg-deb: building package 'python3-cctbx-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-cctbx/python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb'. pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libcctbx-dev/DEBIAN/control, package libcctbx-dev, directory debian/libcctbx-dev Searching for duplicated docs in dependency libcctbx0... symlinking changelog.Debian.gz in libcctbx-dev to file in libcctbx0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcctbx-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb'. dpkg-deb --root-owner-group --build debian/python3-cctbx .. dpkg-deb --root-owner-group --build debian/.debhelper/libcctbx0/dbgsym-root debian/.debhelper/scratch-space/build-libcctbx0 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-cctbx (in debian/python3-cctbx); do_strip: , oemstrip: pkgstriptranslations: processing libcctbx0-dbgsym (in debian/.debhelper/libcctbx0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/python3-cctbx/DEBIAN/control, package python3-cctbx, directory debian/python3-cctbx Searching for duplicated docs in dependency libcctbx-dev... pkgstripfiles: processing control file: debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control, package libcctbx0-dbgsym, directory debian/.debhelper/libcctbx0/dbgsym-root dpkg-deb: building package 'libcctbx0-dbgsym' in 'debian/.debhelper/scratch-space/build-libcctbx0/libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb'. symlinking changelog.Debian.gz in python3-cctbx to file in libcctbx0 Searching for duplicated docs in dependency libcctbx0... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-cctbx ... xargs: warning: options --max-lines and --replace/-I/-i are mutually exclusive, ignoring previous --max-lines value WARNING: optipng failed on usr/bin/labelit.png, ignoring Invalid PNG signature on usr/bin/labelit.png [at void throw_png_error():pngex.h:37] WARNING: advpng failed on usr/bin/labelit.png, ignoring . pkgstripfiles: PNG optimization (0/0) for package python3-cctbx took 4 s dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb'. Renaming libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb to libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.ddeb mv debian/.debhelper/scratch-space/build-libcctbx0/libcctbx0-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build2_riscv64.deb ../libcctbx0-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build2_riscv64.ddeb Renaming python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb to python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.ddeb mv debian/.debhelper/scratch-space/build-python3-cctbx/python3-cctbx-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build2_riscv64.deb ../python3-cctbx-dbgsym_2023.12\+ds2\+\~3.17.0\+ds1-4build2_riscv64.ddeb dpkg-genbuildinfo --build=any -O../cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-03T03:09:53Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.changes: ------------------------------------------------------ Format: 1.8 Date: Sun, 31 Mar 2024 17:46:45 +0000 Source: cctbx Binary: libcctbx-dev libcctbx0 python3-cctbx Built-For-Profiles: noudeb Architecture: riscv64 Version: 2023.12+ds2+~3.17.0+ds1-4build2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: libcctbx-dev - Computational Crystallography Toolbox - headers libcctbx0 - Computational Crystallography Toolbox - runtime libraries python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2023.12+ds2+~3.17.0+ds1-4build2) noble; urgency=medium . * No-change rebuild for CVE-2024-3094 Checksums-Sha1: 5f88707cb42623890f34a380310c9d66aa7e6562 21821 cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.buildinfo 3839a98038e2cd8ca69e9b51e48ceec76161713b 1191644 libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb 229c2c3b8ace8db12a8752d48436bfa09c6e8069 9511594 libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.ddeb 9697d66896799683bdbd13aebcd2d380ab4c1455 2814700 libcctbx0_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb 6c9b695518613ed7a02b019f3ffe96cff6c3f56c 135483136 python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.ddeb 35a613aa7f0ecf44cab703fa43f7919127cc473d 42413850 python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb Checksums-Sha256: 15998ac400971b34788ece5c58216c1c8ca56e19204177982a1bfa1c1c37c26a 21821 cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.buildinfo 2ee6a92fe0b5eb1d679afcf70545e5f18082491ba762754ed9e7465d6dd91d6e 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optional libcctbx0_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb db7df8f9a699a6a4eb6169bd283fd88e 135483136 debug optional python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.ddeb 7f60e690adb967e5f9f5bacfe989f7c9 42413850 python optional python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb Original-Maintainer: Debian Science Maintainers /<>/cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.changes.new could not be renamed to /<>/cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: cctbx Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Architecture: riscv64 Version: 2023.12+ds2+~3.17.0+ds1-4build2 Checksums-Md5: 3d8fc281afde8df73ab49fd5b44677a0 1191644 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python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb Checksums-Sha256: 2ee6a92fe0b5eb1d679afcf70545e5f18082491ba762754ed9e7465d6dd91d6e 1191644 libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb 690af35f9142871f0a33134807cffe9b01116d45fad8930ca40a2a2feeb9c78d 9511594 libcctbx0-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.ddeb 96a073e26167a67d6987541ecde012909204a36e60c7eda27175030ad6741d6b 2814700 libcctbx0_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb b9a6615ab79507e1cd753ec9155737e90e5f3d1821ecada508b8e10ecd363ebc 135483136 python3-cctbx-dbgsym_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.ddeb 21a5fd42dae7a816736ba2491663f7a1e9c53c226aabeb509376f7d9e3ef9a25 42413850 python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Wed, 03 Apr 2024 03:09:32 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.137ubuntu1), adwaita-icon-theme (= 46.0-1), at-spi2-common (= 2.52.0-1), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu1), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), binutils-riscv64-linux-gnu (= 2.42-4ubuntu2), blt (= 2.5.3+dfsg-7), bsdextrautils (= 2.39.3-9ubuntu4), bsdutils (= 1:2.39.3-9ubuntu4), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), ca-certificates (= 20240203), coreutils (= 9.4-3ubuntu5), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), cpp-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), dbus (= 1.14.10-4ubuntu3), dbus-bin (= 1.14.10-4ubuntu3), dbus-daemon (= 1.14.10-4ubuntu3), dbus-session-bus-common (= 1.14.10-4ubuntu3), dbus-system-bus-common (= 1.14.10-4ubuntu3), dbus-user-session (= 1.14.10-4ubuntu3), dconf-gsettings-backend (= 0.40.0-4build2), dconf-service (= 0.40.0-4build2), debconf (= 1.5.86), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build1), dh-autoreconf (= 20), dh-exec (= 0.29build1), dh-python (= 6.20240401), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), fftw-dev (= 2.1.5-6build2), fftw2 (= 2.1.5-6build2), file (= 1:5.45-3build1), findutils (= 4.9.0-5), fontconfig (= 2.15.0-1.1ubuntu2), fontconfig-config (= 2.15.0-1.1ubuntu2), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-lato (= 2.015-1), fonts-lyx (= 2.4.0~RC3-1build3), fonts-urw-base35 (= 20200910-8), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu3), g++-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), g++-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu3), gcc-13-base (= 13.2.0-23ubuntu3), gcc-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), gcc-14-base (= 14-20240315-1ubuntu1), gcc-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu1), gettext-base (= 0.21-14ubuntu1), grep (= 3.11-4), groff-base (= 1.23.0-3build2), gtk-update-icon-cache (= 3.24.41-1.1ubuntu4), gzip (= 1.12-1ubuntu2), hdf5-helpers (= 1.10.10+repack-3.1ubuntu4), hicolor-icon-theme (= 0.17-2), hostname (= 3.23+nmu2ubuntu1), humanity-icon-theme (= 0.6.16), ibverbs-providers (= 50.0-2build2), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), jq (= 1.7.1-3build1), libacl1 (= 2.3.2-1), libaec-dev (= 1.1.2-1), libaec0 (= 1.1.2-1), libann-cctbx-dev (= 1.1.2+doc-9), libann-cctbx0 (= 1.1.2+doc-9), libantlr3c-3.4-0 (= 3.4+dfsg-4build1), libantlr3c-dev (= 3.4+dfsg-4build1), libapparmor1 (= 4.0.0-beta3-0ubuntu3), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20190702+dfsg-4), libasan8 (= 14-20240315-1ubuntu1), libatk-bridge2.0-0t64 (= 2.52.0-1), libatk1.0-0t64 (= 2.52.0-1), libatomic1 (= 14-20240315-1ubuntu1), libatspi2.0-0t64 (= 2.52.0-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libavahi-client3 (= 0.8-13ubuntu5), libavahi-common-data (= 0.8-13ubuntu5), libavahi-common3 (= 0.8-13ubuntu5), libbinutils (= 2.42-4ubuntu2), libblas3 (= 3.12.0-3), libblkid1 (= 2.39.3-9ubuntu4), libboost-atomic1.83-dev (= 1.83.0-2.1ubuntu2), libboost-atomic1.83.0 (= 1.83.0-2.1ubuntu2), libboost-chrono1.83-dev (= 1.83.0-2.1ubuntu2), libboost-chrono1.83.0t64 (= 1.83.0-2.1ubuntu2), libboost-date-time1.83-dev (= 1.83.0-2.1ubuntu2), libboost-date-time1.83.0 (= 1.83.0-2.1ubuntu2), libboost-dev (= 1.83.0.1ubuntu2), libboost-numpy-dev (= 1.83.0.1ubuntu2), libboost-numpy1.83-dev (= 1.83.0-2.1ubuntu2), libboost-numpy1.83.0 (= 1.83.0-2.1ubuntu2), libboost-python-dev (= 1.83.0.1ubuntu2), libboost-python1.83-dev (= 1.83.0-2.1ubuntu2), libboost-python1.83.0 (= 1.83.0-2.1ubuntu2), libboost-serialization1.83-dev (= 1.83.0-2.1ubuntu2), libboost-serialization1.83.0 (= 1.83.0-2.1ubuntu2), libboost-system1.83-dev (= 1.83.0-2.1ubuntu2), libboost-system1.83.0 (= 1.83.0-2.1ubuntu2), libboost-thread-dev (= 1.83.0.1ubuntu2), libboost-thread1.83-dev (= 1.83.0-2.1ubuntu2), libboost-thread1.83.0 (= 1.83.0-2.1ubuntu2), libboost1.83-dev (= 1.83.0-2.1ubuntu2), libbrotli1 (= 1.1.0-2build2), libbsd0 (= 0.12.1-1build1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcairo-gobject2 (= 1.18.0-3), libcairo2 (= 1.18.0-3), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu1), libcbf-dev (= 0.9.7+dfsg1-3.1build2), libcbf1t64 (= 0.9.7+dfsg1-3.1build2), libcc1-0 (= 14-20240315-1ubuntu1), libccp4-data (= 8.0.0-2), libccp4-dev (= 8.0.0-2), libccp4c0 (= 8.0.0-2), libccp4f0 (= 8.0.0-2), libclipper-dev (= 2.1.20201109-2), libclipper2 (= 2.1.20201109-2), libcolord2 (= 1.4.7-1build2), libcom-err2 (= 1.47.0-2.4~exp1ubuntu3), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libcryptsetup12 (= 2:2.7.0-1ubuntu3), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libcups2t64 (= 2.4.7-1.2ubuntu3), libcurl3t64-gnutls (= 8.5.0-2ubuntu9), libcurl4-openssl-dev (= 8.5.0-2ubuntu9), libcurl4t64 (= 8.5.0-2ubuntu9), libdatrie1 (= 0.2.13-3), libdb5.3t64 (= 5.3.28+dfsg2-6build1), libdbus-1-3 (= 1.14.10-4ubuntu3), libdconf1 (= 0.40.0-4build2), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate-dev (= 1.19-1), libdeflate0 (= 1.19-1), libdevmapper1.02.1 (= 2:1.02.185-3ubuntu3), libdouble-conversion3 (= 3.3.0-1), libdpkg-perl (= 1.22.6ubuntu6), libdrm-amdgpu1 (= 2.4.120-2), libdrm-common (= 2.4.120-2), libdrm-nouveau2 (= 2.4.120-2), libdrm-radeon1 (= 2.4.120-2), libdrm2 (= 2.4.120-2), libdw1t64 (= 0.190-1.1build3), libedit2 (= 3.1-20230828-1), libegl-mesa0 (= 24.0.3-1ubuntu4), libegl1 (= 1.7.0-1), libeigen3-dev (= 3.4.0-4), libelf1t64 (= 0.190-1.1build3), libepoxy0 (= 1.5.10-1), libevdev2 (= 1.13.1+dfsg-1), libevent-core-2.1-7t64 (= 2.1.12-stable-9ubuntu2), libevent-pthreads-2.1-7t64 (= 2.1.12-stable-9ubuntu2), libexpat1 (= 2.6.1-2build1), libexpat1-dev (= 2.6.1-2build1), libfabric1 (= 1.17.0-3build2), libfdisk1 (= 2.39.3-9ubuntu4), libffi8 (= 3.4.6-1), libfftw3-bin (= 3.3.10-1ubuntu3), libfftw3-dev (= 3.3.10-1ubuntu3), libfftw3-double3 (= 3.3.10-1ubuntu3), libfftw3-long3 (= 3.3.10-1ubuntu3), libfftw3-single3 (= 3.3.10-1ubuntu3), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.15.0-1.1ubuntu2), libfontenc1 (= 1:1.1.8-1build1), libfreetype6 (= 2.13.2+dfsg-1build3), libfribidi0 (= 1.0.13-3), libgbm1 (= 24.0.3-1ubuntu4), libgcc-13-dev (= 13.2.0-23ubuntu3), libgcc-s1 (= 14-20240315-1ubuntu1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1build1), libgdbm6t64 (= 1.23-5.1build1), libgdk-pixbuf-2.0-0 (= 2.42.10+dfsg-3ubuntu2), libgdk-pixbuf2.0-common (= 2.42.10+dfsg-3ubuntu2), libgfortran5 (= 14-20240315-1ubuntu1), libgl-dev (= 1.7.0-1), libgl1 (= 1.7.0-1), libgl1-mesa-dri (= 24.0.3-1ubuntu4), libglapi-mesa (= 24.0.3-1ubuntu4), libglew2.2 (= 2.2.0-4), libglib2.0-0t64 (= 2.80.0-6build1), libglu1-mesa (= 9.0.2-1.1), libglu1-mesa-dev (= 9.0.2-1.1), libglvnd0 (= 1.7.0-1), libglx-dev (= 1.7.0-1), libglx-mesa0 (= 24.0.3-1ubuntu4), libglx0 (= 1.7.0-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30t64 (= 3.8.3-1.1ubuntu3), libgomp1 (= 14-20240315-1ubuntu1), libgpg-error0 (= 1.47-3build1), libgraphite2-3 (= 1.3.14-2), libgssapi-krb5-2 (= 1.20.1-6ubuntu2), libgtk-3-0t64 (= 3.24.41-1.1ubuntu4), libgtk-3-common (= 3.24.41-1.1ubuntu4), libgudev-1.0-0 (= 1:238-5ubuntu1), libharfbuzz0b (= 8.3.0-2build2), libhdf5-103-1t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-cpp-103-1t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-dev (= 1.10.10+repack-3.1ubuntu4), libhdf5-fortran-102t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-100t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-3.1ubuntu4), libhogweed6t64 (= 3.9.1-2.2build1), libhwloc-plugins (= 2.10.0-1), libhwloc15 (= 2.10.0-1), libibverbs1 (= 50.0-2build2), libice6 (= 2:1.0.10-1build2), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.7-2), libimagequant0 (= 2.18.0-1), libinput-bin (= 1.25.0-1ubuntu2), libinput10 (= 1.25.0-1ubuntu2), libisl23 (= 0.26-3), libjansson4 (= 2.14-2build2), libjbig-dev (= 2.1-6.1ubuntu1), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg-turbo8-dev (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjq1 (= 1.7.1-3build1), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-sphinxdoc (= 7.2.6-6), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libjson-c5 (= 0.17-1), libk5crypto3 (= 1.20.1-6ubuntu2), libkeyutils1 (= 1.6.3-3), libkmod2 (= 31+20240202-2ubuntu5), libkrb5-3 (= 1.20.1-6ubuntu2), libkrb5support0 (= 1.20.1-6ubuntu2), liblapack3 (= 3.12.0-3), liblbfgsb0 (= 3.0+dfsg.4-1), liblcms2-2 (= 2.14-2), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu7), liblerc-dev (= 4.0.0+ds-4ubuntu1), liblerc4 (= 4.0.0+ds-4ubuntu1), libllvm17t64 (= 1:17.0.6-9build2), liblz4-1 (= 1.9.4-1), liblz4-dev (= 1.9.4-1), liblzf1 (= 3.6-4), liblzma-dev (= 5.6.1+really5.4.5-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2), libmd4c0 (= 0.4.8-1), libmmdb2-0 (= 2.0.22-1), libmmdb2-dev (= 2.0.22-1), libmount1 (= 2.39.3-9ubuntu4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libmtdev1t64 (= 1.1.6-1.1build1), libmunge2 (= 0.5.15-4build1), libncursesw6 (= 6.4+20240113-1ubuntu1), libnetcdf19t64 (= 1:4.9.2-5ubuntu3), libnettle8t64 (= 3.9.1-2.2build1), libnghttp2-14 (= 1.59.0-1build2), libnl-3-200 (= 3.7.0-0.3), libnl-route-3-200 (= 3.7.0-0.3), libnotify4 (= 0.8.3-1build2), libonig5 (= 6.9.9-1), libopengl-dev (= 1.7.0-1), libopengl0 (= 1.7.0-1), libopenjp2-7 (= 2.5.0-2build3), libopenmpi3t64 (= 4.1.6-7ubuntu2), libp11-kit0 (= 0.25.3-4ubuntu1), libpam-modules (= 1.5.3-5ubuntu4), libpam-modules-bin (= 1.5.3-5ubuntu4), libpam-runtime (= 1.5.3-5ubuntu4), libpam-systemd (= 255.4-1ubuntu6), libpam0g (= 1.5.3-5ubuntu4), libpango-1.0-0 (= 1.52.1+ds-1build1), libpangocairo-1.0-0 (= 1.52.1+ds-1build1), libpangoft2-1.0-0 (= 1.52.1+ds-1build1), libpciaccess0 (= 0.17-3), libpcre2-16-0 (= 10.42-4ubuntu1), libpcre2-32-0 (= 10.42-4ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.38t64 (= 5.38.2-3.2build1), libpipeline1 (= 1.5.7-2), libpixman-1-0 (= 0.42.2-1), libpkgconf3 (= 1.8.1-2), libpmix2t64 (= 5.0.1-4.1build1), libpng16-16t64 (= 1.6.43-5build1), libpopt0 (= 1.19+dfsg-1), libproc2-0 (= 2:4.0.4-4ubuntu3), libpsl5t64 (= 0.21.2-1.1build1), libpthread-stubs0-dev (= 0.4-1build2), libpython3-all-dev (= 3.12.2-0ubuntu2), libpython3-dev (= 3.12.2-0ubuntu2), libpython3-stdlib (= 3.12.2-0ubuntu2), libpython3.12-dev (= 3.12.2-5ubuntu2), libpython3.12-minimal (= 3.12.2-5ubuntu2), libpython3.12-stdlib (= 3.12.2-5ubuntu2), libpython3.12t64 (= 3.12.2-5ubuntu2), libqhull-r8.0 (= 2020.2-6), libqt5core5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5dbus5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5designer5 (= 5.15.12-2build2), libqt5gui5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5help5 (= 5.15.12-2build2), libqt5network5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5opengl5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5printsupport5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5sql5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5test5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5widgets5t64 (= 5.15.12+dfsg-3ubuntu7), libqt5xml5t64 (= 5.15.12+dfsg-3ubuntu7), libraqm0 (= 0.10.1-1), librdmacm1t64 (= 50.0-2build2), libreadline8t64 (= 8.2-4build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu2), libseccomp2 (= 2.5.5-1ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsemanage-common (= 3.5-1build5), libsemanage2 (= 3.5-1build5), libsensors-config (= 1:3.6.0-9build1), libsensors5 (= 1:3.6.0-9build1), libsepol2 (= 3.5-2), libsframe1 (= 2.42-4ubuntu2), libsharpyuv-dev (= 1.3.2-0.4build3), libsharpyuv0 (= 1.3.2-0.4build3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.39.3-9ubuntu4), libsqlite3-0 (= 3.45.1-1ubuntu2), libssh-4 (= 0.10.6-2build2), libssl-dev (= 3.0.13-0ubuntu3), libssl3t64 (= 3.0.13-0ubuntu3), libssm-dev (= 1.4.0-2), libssm2 (= 1.4.0-2), libstdc++-13-dev (= 13.2.0-23ubuntu3), libstdc++6 (= 14-20240315-1ubuntu1), libsub-override-perl (= 0.10-1), libsystemd-shared (= 255.4-1ubuntu6), libsystemd0 (= 255.4-1ubuntu6), libsz2 (= 1.1.2-1), libtasn1-6 (= 4.19.0-3), libtcl8.6 (= 8.6.14+dfsg-1build1), libthai-data (= 0.1.29-2), libthai0 (= 0.1.29-2), libtiff-dev (= 4.5.1+git230720-4ubuntu2), libtiff6 (= 4.5.1+git230720-4ubuntu2), libtiffxx6 (= 4.5.1+git230720-4ubuntu2), libtinfo6 (= 6.4+20240113-1ubuntu1), libtk8.6 (= 8.6.14-1build1), libtool (= 2.4.7-7), libubsan1 (= 14-20240315-1ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255.4-1ubuntu6), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-9ubuntu4), libvulkan1 (= 1.3.275.0-1), libwacom-common (= 2.10.0-2), libwacom9 (= 2.10.0-2), libwayland-client0 (= 1.22.0-2.1), libwayland-cursor0 (= 1.22.0-2.1), libwayland-egl1 (= 1.22.0-2.1), libwayland-server0 (= 1.22.0-2.1), libwebp-dev (= 1.3.2-0.4build3), libwebp7 (= 1.3.2-0.4build3), libwebpdecoder3 (= 1.3.2-0.4build3), libwebpdemux2 (= 1.3.2-0.4build3), libwebpmux3 (= 1.3.2-0.4build3), libwxbase3.2-1t64 (= 3.2.4+dfsg-4build1), libwxgtk-gl3.2-1t64 (= 3.2.4+dfsg-4build1), libwxgtk3.2-1t64 (= 3.2.4+dfsg-4build1), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libx11-dev (= 2:1.8.7-1), libx11-xcb1 (= 2:1.8.7-1), libxau-dev (= 1:1.0.9-1build5), libxau6 (= 1:1.0.9-1build5), libxcb-dri2-0 (= 1.15-1), libxcb-dri3-0 (= 1.15-1), libxcb-glx0 (= 1.15-1), libxcb-icccm4 (= 0.4.1-1.1build2), libxcb-image0 (= 0.4.0-2), libxcb-keysyms1 (= 0.4.0-1build3), libxcb-present0 (= 1.15-1), libxcb-randr0 (= 1.15-1), libxcb-render-util0 (= 0.3.9-1build3), libxcb-render0 (= 1.15-1), libxcb-shape0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb-sync1 (= 1.15-1), libxcb-util1 (= 0.4.0-1build2), libxcb-xfixes0 (= 1.15-1), libxcb-xinerama0 (= 1.15-1), libxcb-xinput0 (= 1.15-1), libxcb-xkb1 (= 1.15-1), libxcb1 (= 1.15-1), libxcb1-dev (= 1.15-1), libxcomposite1 (= 1:0.4.5-1build2), libxcursor1 (= 1:1.2.1-1), libxdamage1 (= 1:1.1.6-1), libxdmcp-dev (= 1:1.1.3-0ubuntu5), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxfixes3 (= 1:6.0.0-2), libxft2 (= 2.3.6-1), libxi6 (= 2:1.8.1-1), libxinerama1 (= 2:1.1.4-3), libxkbcommon-x11-0 (= 1.6.0-1), libxkbcommon0 (= 1.6.0-1), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libxnvctrl0 (= 510.47.03-0ubuntu4), libxrandr2 (= 2:1.5.2-2), libxrender1 (= 1:0.9.10-1.1), libxshmfence1 (= 1.3-1build4), libxslt1.1 (= 1.1.39-0exp1build1), libxss1 (= 1:1.2.3-1build2), libxtst6 (= 2:1.2.3-1.1), libxxf86vm1 (= 1:1.1.4-1build3), libxxhash0 (= 0.8.2-2), libzstd-dev (= 1.5.5+dfsg2-2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.8.0-20.20), login (= 1:4.13+dfsg1-4ubuntu1), lto-disabled-list (= 47), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-4build1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), mount (= 2.39.3-9ubuntu4), ncurses-base (= 6.4+20240113-1ubuntu1), ncurses-bin (= 6.4+20240113-1ubuntu1), netbase (= 6.4), ocl-icd-libopencl1 (= 2.3.2-1), openssl (= 3.0.13-0ubuntu3), passwd (= 1:4.13+dfsg1-4ubuntu1), patch (= 2.7.6-7build2), perl (= 5.38.2-3.2build1), perl-base (= 5.38.2-3.2build1), perl-modules-5.38 (= 5.38.2-3.2build1), pkg-config (= 1.8.1-2), pkgconf (= 1.8.1-2), pkgconf-bin (= 1.8.1-2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4ubuntu3), pybind11-dev (= 2.11.1-2), pymol-data (= 2.5.0+dfsg-1build6), python-matplotlib-data (= 3.6.3-1ubuntu3), python3 (= 3.12.2-0ubuntu2), python3-all (= 3.12.2-0ubuntu2), python3-all-dev (= 3.12.2-0ubuntu2), python3-appdirs (= 1.4.4-4), python3-attr (= 23.2.0-2), python3-biopython (= 1.81+dfsg-3), python3-brotli (= 1.1.0-2build2), python3-cairo (= 1.25.1-2build2), python3-certifi (= 2023.11.17-1), python3-chardet (= 5.2.0+dfsg-1), python3-contourpy (= 1.0.7-2build1), python3-cycler (= 0.11.0-2), python3-dateutil (= 2.8.2-3), python3-decorator (= 5.1.1-5), python3-dev (= 3.12.2-0ubuntu2), python3-fonttools (= 4.46.0-1build2), python3-freetype (= 2.4.0-1), python3-fs (= 2.4.16-3), python3-h5py (= 3.10.0-1ubuntu3), python3-h5py-serial (= 3.10.0-1ubuntu3), python3-idna (= 3.6-2), python3-iniconfig (= 1.1.1-2), python3-kiwisolver (= 1.4.4-2build1), python3-lxml (= 5.1.0-1build2), python3-lz4 (= 4.0.2+dfsg-1build4), python3-matplotlib (= 3.6.3-1ubuntu3), python3-minimal (= 3.12.2-0ubuntu2), python3-mpmath (= 1.2.1-3), python3-mrcfile (= 1.4.3-3), python3-msgpack (= 1.0.3-3build1), python3-numpy (= 1:1.26.4+ds-6ubuntu1), python3-nxmx (= 0.0.3-2), python3-opengl (= 3.1.7+dfsg-1), python3-orderedset (= 2.0.3+ds1-2), python3-packaging (= 23.2-1), python3-pil (= 10.2.0-1), python3-pil.imagetk (= 10.2.0-1), python3-pint (= 0.19.2-1), python3-pip (= 24.0+dfsg-1ubuntu1), python3-pkg-resources (= 68.1.2-2ubuntu1), python3-pluggy (= 1.4.0-1), python3-procrunner (= 2.3.3-1), python3-psutil (= 5.9.8-2build1), python3-pycbf (= 0.9.7+dfsg1-3.1build2), python3-pymol (= 2.5.0+dfsg-1build6), python3-pyparsing (= 3.1.1-1), python3-pyqt5 (= 5.15.10+dfsg-1build4), python3-pyqt5.qtopengl (= 5.15.10+dfsg-1build4), python3-pyqt5.sip (= 12.13.0-1build3), python3-pytest (= 8.0.2-1), python3-reportlab (= 4.1.0-4), python3-requests (= 2.31.0+dfsg-1ubuntu1), python3-rlpycairo (= 0.3.0-3), python3-scipy (= 1.11.4-6), python3-setuptools (= 68.1.2-2ubuntu1), python3-six (= 1.16.0-4), python3-sympy (= 1.12-7), python3-tk (= 3.12.2-3ubuntu4), python3-tqdm (= 4.66.2-2), python3-tz (= 2024.1-2), python3-ufolib2 (= 0.16.0+dfsg1-1), python3-urllib3 (= 2.0.7-1), python3-wheel (= 0.42.0-2), python3-wxgtk4.0 (= 4.2.1+dfsg-3build2), python3.12 (= 3.12.2-5ubuntu2), python3.12-dev (= 3.12.2-5ubuntu2), python3.12-minimal (= 3.12.2-5ubuntu2), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu6), rsync (= 3.2.7-1build2), scons (= 4.5.2+dfsg-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sfftw-dev (= 2.1.5-6build2), sfftw2 (= 2.1.5-6build2), sgml-base (= 1.31), shared-mime-info (= 2.4-4), sphinx-rtd-theme-common (= 2.0.0+dfsg-1), systemd (= 255.4-1ubuntu6), systemd-dev (= 255.4-1ubuntu6), systemd-sysv (= 255.4-1ubuntu6), sysvinit-utils (= 3.08-6ubuntu2), tar (= 1.35+dfsg-3), tk8.6-blt2.5 (= 2.5.3+dfsg-7), tzdata (= 2024a-1ubuntu1), ubuntu-mono (= 24.04-0ubuntu1), unicode-data (= 15.1.0-1), util-linux (= 2.39.3-9ubuntu4), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), x11proto-dev (= 2023.2-1), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xkb-data (= 2.41-2), xml-core (= 0.19), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1711907205" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libcctbx-dev_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb -------------------------------------------------------- new Debian package, version 2.0. size 1191644 bytes: control archive=23394 bytes. 3050 bytes, 56 lines control 63704 bytes, 826 lines md5sums Package: libcctbx-dev Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build2 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 8583 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2023.12+ds2+~3.17.0+ds1-4build2) Section: devel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everythings needed to link against the cctbx libraries. 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12:57 ./usr/include/cctbx/math/mod.h -rw-r--r-- root/root 3845 2023-12-31 12:57 ./usr/include/cctbx/miller.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/miller/ -rw-r--r-- root/root 2269 2023-12-31 12:57 ./usr/include/cctbx/miller/amplitude_normalisation.h -rw-r--r-- root/root 9005 2023-12-31 12:57 ./usr/include/cctbx/miller/asu.h -rw-r--r-- root/root 6314 2023-12-31 12:57 ./usr/include/cctbx/miller/bins.h -rw-r--r-- root/root 1917 2023-12-31 12:57 ./usr/include/cctbx/miller/change_basis.h -rw-r--r-- root/root 7029 2023-12-31 12:57 ./usr/include/cctbx/miller/expand_to_p1.h -rw-r--r-- root/root 4463 2023-12-31 12:57 ./usr/include/cctbx/miller/f_calc_map.h -rw-r--r-- root/root 3823 2023-12-31 12:57 ./usr/include/cctbx/miller/index_generator.h -rw-r--r-- root/root 2578 2023-12-31 12:57 ./usr/include/cctbx/miller/index_span.h -rw-r--r-- root/root 12427 2023-12-31 12:57 ./usr/include/cctbx/miller/lookup_utils.h -rw-r--r-- root/root 2185 2023-12-31 12:57 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drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/multipolar/ -rw-r--r-- root/root 1824 2023-12-31 12:57 ./usr/include/cctbx/multipolar/aspherical.h -rw-r--r-- root/root 2029 2023-12-31 12:57 ./usr/include/cctbx/restraints.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/ -rw-r--r-- root/root 1655 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/basic.h -rw-r--r-- root/root 4194 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/brick.h -rw-r--r-- root/root 10494 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/change_of_basis_op.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/proto/ -rw-r--r-- root/root 1762 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h -rw-r--r-- root/root 11776 2023-12-31 12:57 ./usr/include/cctbx/sgtbx/direct_space_asu/proto/cut.h -rw-r--r-- root/root 7108 2023-12-31 12:57 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12:57 ./usr/include/mmtbx/probe/SpatialQuery.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/mmtbx/reduce/ -rw-r--r-- root/root 4600 2023-12-31 12:57 ./usr/include/mmtbx/reduce/InteractionGraph.h -rw-r--r-- root/root 16833 2023-12-31 12:57 ./usr/include/mmtbx/reduce/Optimizers.h -rw-r--r-- root/root 5240 2023-12-31 12:57 ./usr/include/mmtbx/reduce/PositionReturn.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/mmtbx/rotamer/ -rw-r--r-- root/root 10098 2023-12-31 12:57 ./usr/include/mmtbx/rotamer/fit.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/mmtbx/rsr/ -rw-r--r-- root/root 13285 2023-12-31 12:57 ./usr/include/mmtbx/rsr/rsr.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/mmtbx/scaling/ -rw-r--r-- root/root 29126 2023-12-31 12:57 ./usr/include/mmtbx/scaling/absolute_scaling.h -rw-r--r-- root/root 25744 2023-12-31 12:57 ./usr/include/mmtbx/scaling/outlier.h -rw-r--r-- root/root 57302 2023-12-31 12:57 ./usr/include/mmtbx/scaling/relative_scaling.h 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2023-12-31 12:57 ./usr/include/smtbx/ab_initio/density_modification.h drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/include/smtbx/boost_python/ -rw-r--r-- root/root 393 2024-03-31 17:46 ./usr/include/smtbx/boost_python/flex_fwd.h -rw-r--r-- root/root 2301 2023-12-31 12:57 ./usr/include/smtbx/error.h -rw-r--r-- root/root 476 2023-12-31 12:57 ./usr/include/smtbx/import_cctbx.h -rw-r--r-- root/root 152 2023-12-31 12:57 ./usr/include/smtbx/import_scitbx_af.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/smtbx/refinement/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/ -rw-r--r-- root/root 1732 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/affine.h -rw-r--r-- root/root 4433 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/direction.h -rw-r--r-- root/root 9783 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/geometrical_hydrogens.h -rw-r--r-- root/root 2539 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/occupancy.h -rw-r--r-- root/root 2394 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/proxy.h -rw-r--r-- root/root 31391 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/reparametrisation.h -rw-r--r-- root/root 3676 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/rigid.h -rw-r--r-- root/root 5965 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/same_group.h -rw-r--r-- root/root 1648 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/scaled_adp.h -rw-r--r-- root/root 3966 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/scatterer_parameters.h -rw-r--r-- root/root 3888 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/shared.h -rw-r--r-- root/root 4524 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/special_position.h -rw-r--r-- root/root 1137 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/symmetry_equivalent.h -rw-r--r-- root/root 1134 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/u_eq_dependent_u_iso.h -rw-r--r-- root/root 1015 2023-12-31 12:57 ./usr/include/smtbx/refinement/constraints/u_iso_dependent_u_iso.h -rw-r--r-- root/root 148 2023-12-31 12:57 ./usr/include/smtbx/refinement/import_cctbx_xray.h -rw-r--r-- root/root 20577 2023-12-31 12:57 ./usr/include/smtbx/refinement/least_squares.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/smtbx/refinement/restraints/ -rw-r--r-- root/root 5055 2023-12-31 12:57 ./usr/include/smtbx/refinement/restraints/origin_fixing.h -rw-r--r-- root/root 2566 2023-12-31 12:57 ./usr/include/smtbx/refinement/weighting_schemes.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/smtbx/structure_factors/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/smtbx/structure_factors/direct/ -rw-r--r-- root/root 52104 2023-12-31 12:57 ./usr/include/smtbx/structure_factors/direct/standard_xray.h -rw-r--r-- root/root 16076 2023-12-31 12:57 ./usr/include/smtbx/structure_factors/direct/table_based.h drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/include/spotfinder/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/spotfinder/applications/ -rw-r--r-- root/root 2023 2023-12-31 12:57 ./usr/include/spotfinder/applications/find_active_area.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/ drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/boost_python/ -rw-r--r-- root/root 3218 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/boost_python/singlemask.h -rw-r--r-- root/root 4008 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/distl.h -rw-r--r-- root/root 2509 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/hough.h -rw-r--r-- root/root 15844 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/libdistl.h -rw-r--r-- root/root 5293 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/spot_shapes.h -rw-r--r-- root/root 276 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/spot_types.h -rw-r--r-- root/root 4454 2023-12-31 12:57 ./usr/include/spotfinder/core_toolbox/spotfilter.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/spotfinder/dxtbx_toolbox/ -rw-r--r-- root/root 3504 2023-12-31 12:57 ./usr/include/spotfinder/dxtbx_toolbox/distl.h -rw-r--r-- root/root 837 2023-12-31 12:57 ./usr/include/spotfinder/dxtbx_toolbox/libdistl.h drwxr-xr-x root/root 0 2023-12-31 12:57 ./usr/include/tbxx/ -rw-r--r-- root/root 487 2023-12-31 12:57 ./usr/include/tbxx/alignment.h -rw-r--r-- root/root 1760 2023-12-31 12:57 ./usr/include/tbxx/error_utils.hpp -rw-r--r-- root/root 2811 2023-12-31 12:57 ./usr/include/tbxx/libc_backtrace.hpp -rw-r--r-- root/root 2857 2023-12-31 12:57 ./usr/include/tbxx/optional_copy.hpp -rw-r--r-- root/root 1493 2023-12-31 12:57 ./usr/include/tbxx/pretty_type_name.hpp -rw-r--r-- root/root 2124 2023-12-31 12:57 ./usr/include/tbxx/time_accu.hpp drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/lib/cctbx/python3.12/ lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/cctbx/python3.12/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libann_adaptor.so -> libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libasymmetric_map.so -> libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcbf-private.so -> libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libccp4io.so -> libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcctbx.so -> libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libomptbx.so -> libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/librstbx.so -> librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libspotfinder.so -> libspotfinder.so.0.0.1 drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/doc/libcctbx-dev/ lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/share/doc/libcctbx-dev/changelog.Debian.gz -> ../libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38654 2024-02-28 12:45 ./usr/share/doc/libcctbx-dev/copyright libcctbx0_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb ----------------------------------------------------- new Debian package, version 2.0. size 2814700 bytes: control archive=2519 bytes. 3138 bytes, 56 lines control 1754 bytes, 21 lines md5sums 1076 bytes, 19 lines shlibs 75 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build2 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 11602 Depends: libann-cctbx0 (>= 1.1.2+doc), libboost-python1.83.0 (>= 1.83.0), libboost-python1.83.0-py312, libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0 (>= 8.0.0), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - runtime libraries Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide the cctbx runtime libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2024-03-31 17:46 ./ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/lib/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 -rw-r--r-- root/root 72200 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 -rw-r--r-- root/root 572360 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcbf-private.so.0 -> libcbf-private.so.0.0.1 -rw-r--r-- root/root 88888 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libccp4io.so.0 -> libccp4io.so.0.0.1 -rw-r--r-- root/root 6208 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcctbx.so.0 -> libcctbx.so.0.0.1 -rw-r--r-- root/root 2906040 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 -rw-r--r-- root/root 3801584 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 -rw-r--r-- root/root 223888 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 -rw-r--r-- root/root 326608 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 -rw-r--r-- root/root 1713600 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 -rw-r--r-- root/root 97016 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 -rw-r--r-- root/root 429088 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 -rw-r--r-- root/root 84608 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libomptbx.so.0 -> libomptbx.so.0.0.1 -rw-r--r-- root/root 10416 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 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libsmtbx_refinement_constraints.so.0.0.1 -rw-r--r-- root/root 690856 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libspotfinder.so.0 -> libspotfinder.so.0.0.1 -rw-r--r-- root/root 514856 2024-03-31 17:46 ./usr/lib/riscv64-linux-gnu/libspotfinder.so.0.0.1 drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/doc/libcctbx0/ -rw-r--r-- root/root 1519 2024-03-31 17:46 ./usr/share/doc/libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38654 2024-02-28 12:45 ./usr/share/doc/libcctbx0/copyright python3-cctbx_2023.12+ds2+~3.17.0+ds1-4build2_riscv64.deb --------------------------------------------------------- new Debian package, version 2.0. size 42413850 bytes: control archive=125451 bytes. 3846 bytes, 56 lines control 488304 bytes, 5037 lines md5sums 277 bytes, 12 lines * postinst #!/bin/sh 390 bytes, 12 lines * prerm #!/bin/sh 11500 bytes, 169 lines shlibs 75 bytes, 2 lines triggers Package: python3-cctbx Source: cctbx Version: 2023.12+ds2+~3.17.0+ds1-4build2 Architecture: riscv64 Maintainer: Ubuntu Developers Installed-Size: 288071 Depends: ca-certificates, libcctbx-dev (= 2023.12+ds2+~3.17.0+ds1-4build2), libcctbx0 (= 2023.12+ds2+~3.17.0+ds1-4build2), python3-pycbf (>= 0.9.7+dfsg1-2~), python3 (<< 3.13), python3 (>= 3.12~), python3-h5py (>= 3), python3-matplotlib, python3-mrcfile, python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3-nxmx, python3-orderedset, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.83.0 (>= 1.83.0), libboost-numpy1.83.0-py312, libboost-python1.83.0 (>= 1.83.0), libboost-python1.83.0-py312, libboost-thread1.83.0 (>= 1.83.0), libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0 (>= 8.0.0), libgcc-s1 (>= 4.5), libgl1, libglu1-mesa | libglu1, libhdf5-103-1t64, libmmdb2-0 (>= 2.0.22), libssm2 (>= 1.4.0), libstdc++6 (>= 13.1) Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide a selected collection of python modules from the cctbx project. 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./usr/bin/mmtbx.probe2 -rwxr-xr-x root/root 3831 2024-03-31 17:46 ./usr/bin/mmtbx.process_predicted_model -rwxr-xr-x root/root 3783 2024-03-31 17:46 ./usr/bin/mmtbx.prune_model -rwxr-xr-x root/root 3259 2024-03-31 17:46 ./usr/bin/mmtbx.python -rwxr-xr-x root/root 3807 2024-03-31 17:46 ./usr/bin/mmtbx.quantum_interface -rwxr-xr-x root/root 3763 2024-03-31 17:46 ./usr/bin/mmtbx.rama_z -rwxr-xr-x root/root 3819 2024-03-31 17:46 ./usr/bin/mmtbx.rebuild_cablam_cache -rwxr-xr-x root/root 3827 2024-03-31 17:46 ./usr/bin/mmtbx.rebuild_rotarama_cache -rwxr-xr-x root/root 3767 2024-03-31 17:46 ./usr/bin/mmtbx.reduce2 -rwxr-xr-x root/root 3855 2024-03-31 17:46 ./usr/bin/mmtbx.refine_anomalous_substructure -rwxr-xr-x root/root 3799 2024-03-31 17:46 ./usr/bin/mmtbx.rigid_bond_test -rwxr-xr-x root/root 3818 2024-03-31 17:46 ./usr/bin/mmtbx.ringer -rwxr-xr-x root/root 3815 2024-03-31 17:46 ./usr/bin/mmtbx.search_pdb_symmetry -rwxr-xr-x root/root 3843 2024-03-31 17:46 ./usr/bin/mmtbx.select_best_starting_model -rwxr-xr-x root/root 3802 2024-03-31 17:46 ./usr/bin/mmtbx.show_build_path -rwxr-xr-x root/root 3802 2024-03-31 17:46 ./usr/bin/mmtbx.show_dist_paths -rwxr-xr-x root/root 3831 2024-03-31 17:46 ./usr/bin/mmtbx.show_r_factors_by_shell -rwxr-xr-x root/root 3835 2024-03-31 17:46 ./usr/bin/mmtbx.show_suspicious_residues -rwxr-xr-x root/root 3823 2024-03-31 17:46 ./usr/bin/mmtbx.simulate_low_res_data -rwxr-xr-x root/root 3799 2024-03-31 17:46 ./usr/bin/mmtbx.ss_idealization -rwxr-xr-x root/root 3815 2024-03-31 17:46 ./usr/bin/mmtbx.ssm_rmsd_for_chains -rwxr-xr-x root/root 3783 2024-03-31 17:46 ./usr/bin/mmtbx.strip_model -rwxr-xr-x root/root 3759 2024-03-31 17:46 ./usr/bin/mmtbx.super -rwxr-xr-x root/root 3775 2024-03-31 17:46 ./usr/bin/mmtbx.superpose -rwxr-xr-x root/root 3775 2024-03-31 17:46 ./usr/bin/mmtbx.table_one -rwxr-xr-x root/root 3791 2024-03-31 17:46 ./usr/bin/mmtbx.validate_ions -rwxr-xr-x root/root 3803 2024-03-31 17:46 ./usr/bin/mmtbx.validate_ligands -rwxr-xr-x root/root 3799 2024-03-31 17:46 ./usr/bin/mmtbx.validate_waters -rwxr-xr-x root/root 3811 2024-03-31 17:46 ./usr/bin/mmtbx.validation_summary -rwxr-xr-x root/root 3815 2024-03-31 17:46 ./usr/bin/mmtbx.verify_mon_lib_data -rwxr-xr-x root/root 3799 2024-03-31 17:46 ./usr/bin/mmtbx.water_b_factors -rwxr-xr-x root/root 3787 2024-03-31 17:46 ./usr/bin/mmtbx.water_screen -rwxr-xr-x root/root 3767 2024-03-31 17:46 ./usr/bin/mmtbx.xtriage -rwxr-xr-x root/root 3803 2024-03-31 17:46 ./usr/bin/mmtbx.xtriage_gui -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/molprobity.barbed_wire_analysis -rwxr-xr-x root/root 3800 2024-03-31 17:46 ./usr/bin/molprobity.cablam -rwxr-xr-x root/root 3808 2024-03-31 17:46 ./usr/bin/molprobity.cbetadev -rwxr-xr-x root/root 3844 2024-03-31 17:46 ./usr/bin/molprobity.chiral_validation -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/molprobity.clashscore -rwxr-xr-x root/root 3776 2024-03-31 17:46 ./usr/bin/molprobity.kinemage -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/molprobity.molprobity -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/molprobity.mp_validate_bonds -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/molprobity.omegalyze -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/molprobity.probescore_ligand -rwxr-xr-x root/root 3808 2024-03-31 17:46 ./usr/bin/molprobity.ramalyze -rwxr-xr-x root/root 3792 2024-03-31 17:46 ./usr/bin/molprobity.rna_validate -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/molprobity.rna_validate_bonds -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/molprobity.rna_validate_puckers -rwxr-xr-x root/root 3820 2024-03-31 17:46 ./usr/bin/molprobity.rna_validate_suites -rwxr-xr-x root/root 3808 2024-03-31 17:46 ./usr/bin/molprobity.rotalyze -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/molprobity.suitename -rwxr-xr-x root/root 3796 2024-03-31 17:46 ./usr/bin/molprobity.suitename_old -rwxr-xr-x root/root 3819 2024-03-31 17:46 ./usr/bin/molprobity.undowser_validation -rwxr-xr-x root/root 3260 2024-03-31 17:46 ./usr/bin/omptbx.python -rwxr-xr-x root/root 3803 2024-03-31 17:46 ./usr/bin/omptbx.show_build_path -rwxr-xr-x root/root 3803 2024-03-31 17:46 ./usr/bin/omptbx.show_dist_paths -rwxr-xr-x root/root 3782 2024-03-31 17:46 ./usr/bin/phasertng.HKLviewer -rwxr-xr-x root/root 3771 2024-03-31 17:46 ./usr/bin/phenix.HKLinfo -rwxr-xr-x root/root 3779 2024-03-31 17:46 ./usr/bin/phenix.HKLviewer -rwxr-xr-x root/root 3760 2024-03-31 17:46 ./usr/bin/phenix.angle -rwxr-xr-x root/root 3788 2024-03-31 17:46 ./usr/bin/phenix.auto_sharpen -rwxr-xr-x root/root 3820 2024-03-31 17:46 ./usr/bin/phenix.barbed_wire_analysis -rwxr-xr-x root/root 3796 2024-03-31 17:46 ./usr/bin/phenix.cablam -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/phenix.cablam_idealization -rwxr-xr-x root/root 3800 2024-03-31 17:46 ./usr/bin/phenix.cablam_training -rwxr-xr-x root/root 3800 2024-03-31 17:46 ./usr/bin/phenix.cablam_validate -rwxr-xr-x root/root 3804 2024-03-31 17:46 ./usr/bin/phenix.cbetadev -rwxr-xr-x root/root 3768 2024-03-31 17:46 ./usr/bin/phenix.cc_star -rwxr-xr-x root/root 3804 2024-03-31 17:46 ./usr/bin/phenix.chains_as_models -rwxr-xr-x root/root 3840 2024-03-31 17:46 ./usr/bin/phenix.chiral_validation -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.cif_as_mtz -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.cif_as_pdb -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.clashscore -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.cns_as_mtz -rwxr-xr-x root/root 3776 2024-03-31 17:46 ./usr/bin/phenix.comparama -rwxr-xr-x root/root 3874 2024-03-31 17:46 ./usr/bin/phenix.compare_datasets -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.csv_as_mtz -rwxr-xr-x root/root 3842 2024-03-31 17:46 ./usr/bin/phenix.data_viewer -rwxr-xr-x root/root 3768 2024-03-31 17:46 ./usr/bin/phenix.diffuse -rwxr-xr-x root/root 3772 2024-03-31 17:46 ./usr/bin/phenix.dynamics -rwxr-xr-x root/root 3756 2024-03-31 17:46 ./usr/bin/phenix.emma -rwxr-xr-x root/root 3829 2024-03-31 17:46 ./usr/bin/phenix.emringer -rwxr-xr-x root/root 3776 2024-03-31 17:46 ./usr/bin/phenix.evalurama -rwxr-xr-x root/root 3863 2024-03-31 17:46 ./usr/bin/phenix.example_viewer -rwxr-xr-x root/root 3832 2024-03-31 17:46 ./usr/bin/phenix.explore_metric_symmetry -rwxr-xr-x root/root 3756 2024-03-31 17:46 ./usr/bin/phenix.f000 -rwxr-xr-x root/root 3800 2024-03-31 17:46 ./usr/bin/phenix.fab_elbow_angle -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.fake_f_obs -rwxr-xr-x root/root 3805 2024-03-31 17:46 ./usr/bin/phenix.feature_enhanced_map -rwxr-xr-x root/root 3788 2024-03-31 17:46 ./usr/bin/phenix.fem -rwxr-xr-x root/root 3756 2024-03-31 17:46 ./usr/bin/phenix.fest -rwxr-xr-x root/root 3776 2024-03-31 17:46 ./usr/bin/phenix.fetch_pdb -rwxr-xr-x root/root 3764 2024-03-31 17:46 ./usr/bin/phenix.fft -rwxr-xr-x root/root 3804 2024-03-31 17:46 ./usr/bin/phenix.find_peaks_holes -rwxr-xr-x root/root 3836 2024-03-31 17:46 ./usr/bin/phenix.find_reticular_twin_laws -rwxr-xr-x root/root 3800 2024-03-31 17:46 ./usr/bin/phenix.find_tls_groups -rwxr-xr-x root/root 3764 2024-03-31 17:46 ./usr/bin/phenix.fmodel -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/phenix.fobs_minus_fobs_map -rwxr-xr-x root/root 3808 2024-03-31 17:46 ./usr/bin/phenix.form_factor_query -rwxr-xr-x root/root 3792 2024-03-31 17:46 ./usr/bin/phenix.french_wilson -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/phenix.geometry_minimization -rwxr-xr-x root/root 3788 2024-03-31 17:46 ./usr/bin/phenix.grow_density -rwxr-xr-x root/root 3760 2024-03-31 17:46 ./usr/bin/phenix.hbond -rwxr-xr-x root/root 3856 2024-03-31 17:46 ./usr/bin/phenix.helix_sheet_recs_as_pdb_files -rwxr-xr-x root/root 3837 2024-03-31 17:46 ./usr/bin/phenix.image_viewer -rwxr-xr-x root/root 3772 2024-03-31 17:46 ./usr/bin/phenix.kinemage -rwxr-xr-x root/root 3768 2024-03-31 17:46 ./usr/bin/phenix.map_box -rwxr-xr-x root/root 3796 2024-03-31 17:46 ./usr/bin/phenix.map_comparison -rwxr-xr-x root/root 3828 2024-03-31 17:46 ./usr/bin/phenix.map_to_model_histogram -rwxr-xr-x root/root 3836 2024-03-31 17:46 ./usr/bin/phenix.map_to_structure_factors -rwxr-xr-x root/root 3756 2024-03-31 17:46 ./usr/bin/phenix.maps -rwxr-xr-x root/root 3756 2024-03-31 17:46 ./usr/bin/phenix.mask -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/phenix.maximum_entropy_map -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.merging_statistics -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.model_idealization -rwxr-xr-x root/root 3776 2024-03-31 17:46 ./usr/bin/phenix.model_map -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/phenix.model_model_distances -rwxr-xr-x root/root 3788 2024-03-31 17:46 ./usr/bin/phenix.model_vs_map -rwxr-xr-x root/root 3808 2024-03-31 17:46 ./usr/bin/phenix.model_vs_sequence -rwxr-xr-x root/root 3804 2024-03-31 17:46 ./usr/bin/phenix.models_as_chains -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.molprobity -rwxr-xr-x root/root 3808 2024-03-31 17:46 ./usr/bin/phenix.mp_validate_bonds -rwxr-xr-x root/root 3772 2024-03-31 17:46 ./usr/bin/phenix.mtz.dump -rwxr-xr-x root/root 3768 2024-03-31 17:46 ./usr/bin/phenix.mtz2map -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.mtz_as_cif -rwxr-xr-x root/root 3776 2024-03-31 17:46 ./usr/bin/phenix.omegalyze -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.pdb.b_factor_stats -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/phenix.pdb.biomt_reconstruction -rwxr-xr-x root/root 3792 2024-03-31 17:46 ./usr/bin/phenix.pdb.hierarchy -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/phenix.pdb.mtrix_reconstruction -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.pdb_as_cif -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.pdb_atom_selection -rwxr-xr-x root/root 3847 2024-03-31 17:46 ./usr/bin/phenix.pdb_editor -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.pdb_interpretation -rwxr-xr-x root/root 3772 2024-03-31 17:46 ./usr/bin/phenix.pdbtools -rwxr-xr-x root/root 3768 2024-03-31 17:46 ./usr/bin/phenix.perigee -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/phenix.plan_sad_experiment -rwxr-xr-x root/root 3764 2024-03-31 17:46 ./usr/bin/phenix.polder -rwxr-xr-x root/root 3832 2024-03-31 17:46 ./usr/bin/phenix.process_predicted_model -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/phenix.r_factor_statistics -rwxr-xr-x root/root 3764 2024-03-31 17:46 ./usr/bin/phenix.rama_z -rwxr-xr-x root/root 3804 2024-03-31 17:46 ./usr/bin/phenix.ramalyze -rwxr-xr-x root/root 3796 2024-03-31 17:46 ./usr/bin/phenix.rank_scale_map -rwxr-xr-x root/root 3828 2024-03-31 17:46 ./usr/bin/phenix.real_space_correlation -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/phenix.real_space_diff_map -rwxr-xr-x root/root 3832 2024-03-31 17:46 ./usr/bin/phenix.reciprocal_space_arrays -rwxr-xr-x root/root 3840 2024-03-31 17:46 ./usr/bin/phenix.reflection_file_converter -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/phenix.reflection_statistics -rwxr-xr-x root/root 3768 2024-03-31 17:46 ./usr/bin/phenix.reindex -rwxr-xr-x root/root 3800 2024-03-31 17:46 ./usr/bin/phenix.remove_outliers -rwxr-xr-x root/root 3810 2024-03-31 17:46 ./usr/bin/phenix.resolution -rwxr-xr-x root/root 3788 2024-03-31 17:46 ./usr/bin/phenix.rna_validate -rwxr-xr-x root/root 3812 2024-03-31 17:46 ./usr/bin/phenix.rna_validate_bonds -rwxr-xr-x root/root 3820 2024-03-31 17:46 ./usr/bin/phenix.rna_validate_puckers -rwxr-xr-x root/root 3816 2024-03-31 17:46 ./usr/bin/phenix.rna_validate_suites -rwxr-xr-x root/root 3804 2024-03-31 17:46 ./usr/bin/phenix.rotalyze -rwxr-xr-x root/root 3860 2024-03-31 17:46 ./usr/bin/phenix.secondary_structure_restraints -rwxr-xr-x root/root 3860 2024-03-31 17:46 ./usr/bin/phenix.secondary_structure_validation -rwxr-xr-x root/root 3824 2024-03-31 17:46 ./usr/bin/phenix.segment_and_split_map -rwxr-xr-x root/root 3756 2024-03-31 17:46 ./usr/bin/phenix.sisa -rwxr-xr-x root/root 3788 2024-03-31 17:46 ./usr/bin/phenix.sort_hetatms -rwxr-xr-x root/root 3776 2024-03-31 17:46 ./usr/bin/phenix.suitename -rwxr-xr-x root/root 3792 2024-03-31 17:46 ./usr/bin/phenix.suitename_old -rwxr-xr-x root/root 3752 2024-03-31 17:46 ./usr/bin/phenix.tls -rwxr-xr-x root/root 3788 2024-03-31 17:46 ./usr/bin/phenix.tls_analysis -rwxr-xr-x root/root 3780 2024-03-31 17:46 ./usr/bin/phenix.tls_as_xyz -rwxr-xr-x root/root 3815 2024-03-31 17:46 ./usr/bin/phenix.undowser_validation -rwxr-xr-x root/root 3808 2024-03-31 17:46 ./usr/bin/phenix.unique_with_biomt -rwxr-xr-x root/root 3801 2024-03-31 17:46 ./usr/bin/phenix.validate_H -rwxr-xr-x root/root 3764 2024-03-31 17:46 ./usr/bin/phenix.xmanip -rwxr-xr-x root/root 3768 2024-03-31 17:46 ./usr/bin/phenix.xtriage -rwxr-xr-x root/root 3814 2024-03-31 17:46 ./usr/bin/rstbx.index -rwxr-xr-x root/root 3259 2024-03-31 17:46 ./usr/bin/rstbx.python -rwxr-xr-x root/root 3802 2024-03-31 17:46 ./usr/bin/rstbx.show_build_path -rwxr-xr-x root/root 3802 2024-03-31 17:46 ./usr/bin/rstbx.show_dist_paths -rwxr-xr-x root/root 3791 2024-03-31 17:46 ./usr/bin/rstbx.simage.create -rwxr-xr-x root/root 3902 2024-03-31 17:46 ./usr/bin/rstbx.simage.explore_completeness -rwxr-xr-x root/root 3791 2024-03-31 17:46 ./usr/bin/rstbx.simage.solver -rwxr-xr-x root/root 3862 2024-03-31 17:46 ./usr/bin/rstbx.simage.wx_display -rwxr-xr-x root/root 3777 2024-03-31 17:46 ./usr/bin/samosa.join -rwxr-xr-x root/root 3781 2024-03-31 17:46 ./usr/bin/samosa.scale -rwxr-xr-x root/root 3823 2024-03-31 17:46 ./usr/bin/scitbx.apply_tapenade_hints -rwxr-xr-x root/root 3807 2024-03-31 17:46 ./usr/bin/scitbx.generate_error_h -rwxr-xr-x root/root 3779 2024-03-31 17:46 ./usr/bin/scitbx.histogram -rwxr-xr-x root/root 3260 2024-03-31 17:46 ./usr/bin/scitbx.python -rwxr-xr-x root/root 3803 2024-03-31 17:46 ./usr/bin/scitbx.show_build_path -rwxr-xr-x root/root 3803 2024-03-31 17:46 ./usr/bin/scitbx.show_dist_paths -rwxr-xr-x root/root 3799 2024-03-31 17:46 ./usr/bin/scitbx.show_exp_times -rwxr-xr-x root/root 3783 2024-03-31 17:46 ./usr/bin/scitbx.show_sizes -rwxr-xr-x root/root 3807 2024-03-31 17:46 ./usr/bin/scitbx.unicode_examples -rwxr-xr-x root/root 3263 2024-03-31 17:46 ./usr/bin/serialtbx.python -rwxr-xr-x root/root 3806 2024-03-31 17:46 ./usr/bin/serialtbx.show_build_path -rwxr-xr-x root/root 3806 2024-03-31 17:46 ./usr/bin/serialtbx.show_dist_paths -rwxr-xr-x root/root 3811 2024-03-31 17:46 ./usr/bin/smtbx.absolute_structure -rwxr-xr-x root/root 3783 2024-03-31 17:46 ./usr/bin/smtbx.anom_refine -rwxr-xr-x root/root 3819 2024-03-31 17:46 ./usr/bin/smtbx.benchmark_refinement -rwxr-xr-x root/root 3759 2024-03-31 17:46 ./usr/bin/smtbx.masks -rwxr-xr-x root/root 3259 2024-03-31 17:46 ./usr/bin/smtbx.python -rwxr-xr-x root/root 3763 2024-03-31 17:46 ./usr/bin/smtbx.refine -rwxr-xr-x 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root/root 2546 2023-12-31 12:57 ./usr/lib/python3/dist-packages/xfel/xpp/isoform.py -rw-r--r-- root/root 9900 2023-12-31 12:57 ./usr/lib/python3/dist-packages/xfel/xpp/progress_support.py -rw-r--r-- root/root 7206 2023-12-31 12:57 ./usr/lib/python3/dist-packages/xfel/xpp/progress_utils.py -rw-r--r-- root/root 3525 2023-12-31 12:57 ./usr/lib/python3/dist-packages/xfel/xpp/simulate.py -rw-r--r-- root/root 5687 2023-12-31 12:57 ./usr/lib/python3/dist-packages/xfel/xpp/split_pickles.py drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/doc/python3-cctbx/ lrwxrwxrwx root/root 0 2024-03-31 17:46 ./usr/share/doc/python3-cctbx/changelog.Debian.gz -> ../libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38654 2024-02-28 12:45 ./usr/share/doc/python3-cctbx/copyright drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-03-31 17:46 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1 2024-02-28 12:45 ./usr/share/lintian/overrides/python3-cctbx +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 8136320 Build-Time: 25978 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 2263 Job: cctbx_2023.12+ds2+~3.17.0+ds1-4build2.dsc Machine Architecture: riscv64 Package: cctbx Package-Time: 28309 Source-Version: 2023.12+ds2+~3.17.0+ds1-4build2 Space: 8136320 Status: successful Version: 2023.12+ds2+~3.17.0+ds1-4build2 -------------------------------------------------------------------------------- Finished at 2024-04-03T03:09:53Z Build needed 07:51:49, 8136320k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-27987400 Scanning for processes to kill in build PACKAGEBUILD-27987400