RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '1034643-2252188', '/home/buildd/filecache-default/a41bfa4400299c761e51ea25115e36344dadece3'] Synching the system clock with the buildd NTP service... 18 May 17:45:47 ntpdate[27322]: adjust time server 10.122.37.1 offset -0.000008 sec Unpacking chroot for build 1034643-2252188 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '1034643-2252188'] Mounting chroot for build 1034643-2252188 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '1034643-2252188', 'universe'] Attempting OGRE for universe in build-1034643-2252188 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '1034643-2252188', 'deb http://ftpmaster.internal/ubuntu karmic main universe'] Overriding sources.list in build-1034643-2252188 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '1034643-2252188'] Updating debian chroot for build 1034643-2252188 Get:1 http://ftpmaster.internal karmic Release.gpg [189B] Get:2 http://ftpmaster.internal karmic Release [74.6kB] Get:3 http://ftpmaster.internal karmic/main Packages [1266kB] Get:4 http://ftpmaster.internal karmic/universe Packages [4939kB] Fetched 6279kB in 4s (1496kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils bsdutils coreutils cpio cpp-4.4 e2fslibs e2fsprogs findutils g++-4.4 gcc-4.4 gcc-4.4-base libblkid1 libc6 libc6-dev libcomerr2 libgcc1 libgomp1 libmpfr1ldbl libncurses5 libppl-c2 libppl7 libselinux1 libsepol1 libslang2 libss2 libstdc++6 libstdc++6-4.4-dev libuuid1 libvolume-id1 linux-libc-dev login mount ncurses-base ncurses-bin passwd pkg-create-dbgsym pkgbinarymangler sed tar util-linux zlib1g 42 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/35.8MB of archives. After this operation, 90.1kB disk space will be freed. WARNING: The following packages cannot be authenticated! base-files coreutils linux-libc-dev libc6-dev libgomp1 cpp-4.4 gcc-4.4-base libgcc1 gcc-4.4 g++-4.4 libstdc++6-4.4-dev libstdc++6 libmpfr1ldbl libppl-c2 libppl7 zlib1g binutils findutils libc6 libselinux1 passwd libuuid1 libblkid1 e2fsprogs login libsepol1 mount ncurses-bin sed tar util-linux bsdutils libncurses5 ncurses-base libcomerr2 e2fslibs libslang2 libss2 libvolume-id1 cpio pkg-create-dbgsym pkgbinarymangler Extracting templates from packages: 71% Extracting templates from packages: 100% Preconfiguring packages ... Authentication warning overridden. (Reading database ... 9292 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu1 (using .../base-files_5.0.0ubuntu2_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu2) ... Installing new version of config file /etc/dpkg/origins/ubuntu ... (Reading database ... 9292 files and directories currently installed.) Preparing to replace coreutils 7.2-1 (using .../coreutils_7.3-1_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (7.3-1) ... (Reading database ... 9292 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.30-1.2 (using .../linux-libc-dev_2.6.30-5.6_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libc6-dev 2.9-4ubuntu6 (using .../libc6-dev_2.9-9ubuntu1_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libgomp1 4.4.0-0ubuntu5 (using .../libgomp1_4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace cpp-4.4 4.4.0-0ubuntu5 (using .../cpp-4.4_4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.0-0ubuntu5 (using .../gcc-4.4-base_4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement gcc-4.4-base ... Setting up gcc-4.4-base (4.4.0-3ubuntu5) ... (Reading database ... 9292 files and directories currently installed.) Preparing to replace libgcc1 1:4.4.0-0ubuntu5 (using .../libgcc1_1%3a4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.4.0-3ubuntu5) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9292 files and directories currently installed.) Preparing to replace gcc-4.4 4.4.0-0ubuntu5 (using .../gcc-4.4_4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace g++-4.4 4.4.0-0ubuntu5 (using .../g++-4.4_4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.0-0ubuntu5 (using .../libstdc++6-4.4-dev_4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace libstdc++6 4.4.0-0ubuntu5 (using .../libstdc++6_4.4.0-3ubuntu5_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.4.0-3ubuntu5) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9293 files and directories currently installed.) Preparing to replace libmpfr1ldbl 2.4.0-1ubuntu3 (using .../libmpfr1ldbl_2.4.1-1ubuntu1_amd64.deb) ... Unpacking replacement libmpfr1ldbl ... Preparing to replace libppl-c2 0.10.1~pre13-1 (using .../libppl-c2_0.10.2-1_amd64.deb) ... Unpacking replacement libppl-c2 ... Preparing to replace libppl7 0.10.1~pre13-1 (using .../libppl7_0.10.2-1_amd64.deb) ... Unpacking replacement libppl7 ... Preparing to replace zlib1g 1:1.2.3.3.dfsg-12ubuntu2 (using .../zlib1g_1%3a1.2.3.3.dfsg-13ubuntu1_amd64.deb) ... Unpacking replacement zlib1g ... Setting up zlib1g (1:1.2.3.3.dfsg-13ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9293 files and directories currently installed.) Preparing to replace binutils 2.19.51.20090423-0ubuntu2 (using .../binutils_2.19.51.20090515-0ubuntu1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace findutils 4.4.0-2ubuntu4 (using .../findutils_4.4.1-1ubuntu2_amd64.deb) ... Unpacking replacement findutils ... Setting up findutils (4.4.1-1ubuntu2) ... (Reading database ... 9293 files and directories currently installed.) Preparing to replace libc6 2.9-4ubuntu6 (using .../libc6_2.9-9ubuntu1_amd64.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.9-9ubuntu1) ... Installing new version of config file /etc/init.d/glibc.sh ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9293 files and directories currently installed.) Preparing to replace libselinux1 2.0.65-5build1 (using .../libselinux1_2.0.71-1_amd64.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.0.71-1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9293 files and directories currently installed.) Preparing to replace passwd 1:4.1.1-6ubuntu6 (using .../passwd_1%3a4.1.3.1-1ubuntu1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.3.1-1ubuntu1) ... (Reading database ... 9289 files and directories currently installed.) Preparing to replace libuuid1 1.41.5-1ubuntu1 (using .../libuuid1_1.41.5-1ubuntu3_amd64.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9289 files and directories currently installed.) Preparing to replace libblkid1 1.41.5-1ubuntu1 (using .../libblkid1_2.15-1ubuntu2_amd64.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.15-1ubuntu2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9292 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.5-1ubuntu1 (using .../e2fsprogs_1.41.5-1ubuntu3_amd64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.5-1ubuntu3) ... (Reading database ... 9286 files and directories currently installed.) Preparing to replace login 1:4.1.1-6ubuntu6 (using .../login_1%3a4.1.3.1-1ubuntu1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.3.1-1ubuntu1) ... Installing new version of config file /etc/pam.d/login ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/securetty ... (Reading database ... 9283 files and directories currently installed.) Preparing to replace libsepol1 2.0.30-2ubuntu1 (using .../libsepol1_2.0.32-1ubuntu1_amd64.deb) ... Unpacking replacement libsepol1 ... Setting up libsepol1 (2.0.32-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9283 files and directories currently installed.) Preparing to replace mount 2.14.2-1ubuntu4 (using .../mount_2.15-1ubuntu2_amd64.deb) ... Unpacking replacement mount ... Setting up mount (2.15-1ubuntu2) ... (Reading database ... 9283 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20090207-1ubuntu1 (using .../ncurses-bin_5.7+20090502-1ubuntu1_amd64.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.7+20090502-1ubuntu1) ... (Reading database ... 9283 files and directories currently installed.) Preparing to replace sed 4.1.5-8 (using .../archives/sed_4.2-1_amd64.deb) ... Unpacking replacement sed ... Setting up sed (4.2-1) ... (Reading database ... 9281 files and directories currently installed.) Preparing to replace tar 1.20-1 (using .../archives/tar_1.22-1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.22-1) ... (Reading database ... 9281 files and directories currently installed.) Preparing to replace util-linux 2.14.2-1ubuntu4 (using .../util-linux_2.15-1ubuntu2_amd64.deb) ... Unpacking replacement util-linux ... Setting up util-linux (2.15-1ubuntu2) ... (Reading database ... 9290 files and directories currently installed.) Preparing to replace bsdutils 1:2.14.2-1ubuntu4 (using .../bsdutils_1%3a2.15-1ubuntu2_amd64.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.15-1ubuntu2) ... (Reading database ... 9290 files and directories currently installed.) Preparing to replace libncurses5 5.7+20090207-1ubuntu1 (using .../libncurses5_5.7+20090502-1ubuntu1_amd64.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.7+20090502-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9290 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20090207-1ubuntu1 (using .../ncurses-base_5.7+20090502-1ubuntu1_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.7+20090502-1ubuntu1) ... (Reading database ... 9290 files and directories currently installed.) Preparing to replace libcomerr2 1.41.5-1ubuntu1 (using .../libcomerr2_1.41.5-1ubuntu3_amd64.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9290 files and directories currently installed.) Preparing to replace e2fslibs 1.41.5-1ubuntu1 (using .../e2fslibs_1.41.5-1ubuntu3_amd64.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9290 files and directories currently installed.) Preparing to replace libslang2 2.1.3-3ubuntu3 (using .../libslang2_2.1.4-3_amd64.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.1.4-3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9293 files and directories currently installed.) Preparing to replace libss2 1.41.5-1ubuntu1 (using .../libss2_1.41.5-1ubuntu3_amd64.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.5-1ubuntu3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9293 files and directories currently installed.) Preparing to replace libvolume-id1 141-1 (using .../libvolume-id1_141-1.1_amd64.deb) ... Unpacking replacement libvolume-id1 ... Setting up libvolume-id1 (141-1.1) ... (Reading database ... 9293 files and directories currently installed.) Preparing to replace cpio 2.9-15ubuntu1 (using .../cpio_2.9.90-3ubuntu1_amd64.deb) ... Unpacking replacement cpio ... Preparing to replace pkg-create-dbgsym 0.26 (using .../pkg-create-dbgsym_0.27_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 57 (using .../pkgbinarymangler_58_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up linux-libc-dev (2.6.30-5.6) ... Setting up libc6-dev (2.9-9ubuntu1) ... Setting up libgomp1 (4.4.0-3ubuntu5) ... Setting up libmpfr1ldbl (2.4.1-1ubuntu1) ... Setting up libppl7 (0.10.2-1) ... Setting up libppl-c2 (0.10.2-1) ... Setting up cpp-4.4 (4.4.0-3ubuntu5) ... Setting up binutils (2.19.51.20090515-0ubuntu1) ... Setting up gcc-4.4 (4.4.0-3ubuntu5) ... Setting up cpio (2.9.90-3ubuntu1) ... Setting up pkg-create-dbgsym (0.27) ... Setting up pkgbinarymangler (58) ... Setting up libstdc++6-4.4-dev (4.4.0-3ubuntu5) ... Setting up g++-4.4 (4.4.0-3ubuntu5) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '1034643-2252188', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=karmic', '--comp=universe', 'cdo_1.3.1+dfsg-3.dsc'] Initiating build Automatic build of cdo_1.3.1+dfsg-3 on yellow by sbuild/amd64 1.170.5 Build started at 20090518-1747 ****************************************************************************** cdo_1.3.1+dfsg-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>> 4.1), dh-buildinfo, libhdf5-serial-dev, libproj-dev, autoconf Checking for already installed source dependencies... cdbs: missing debhelper: missing dh-buildinfo: missing libhdf5-serial-dev: missing libproj-dev: missing autoconf: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper dh-buildinfo libhdf5-serial-dev libproj-dev autoconf Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libvolume-id1 Use 'apt-get autoremove' to remove them. The following extra packages will be installed: automake autotools-dev bsdmainutils fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libglib2.0-0 libhdf5-serial-1.6.6-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libjpeg62 libjpeg62-dev libmagic1 libproj0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db netbase po-debconf proj-data zlib1g-dev Suggested packages: autoconf2.13 autobook autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make cvs gettext-doc groff libhdf5-doc libdata-dump-perl proj-bin libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl Recommended packages: curl wget lynx libglib2.0-data shared-mime-info libmailtools-perl libhtml-format-perl libcompress-zlib-perl xml-core ifupdown libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper dh-buildinfo fdupes file gettext gettext-base groff-base html2text intltool intltool-debian libcroco3 libexpat1 libglib2.0-0 libhdf5-serial-1.6.6-0 libhdf5-serial-dev libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libjpeg62 libjpeg62-dev libmagic1 libproj-dev libproj0 liburi-perl libwww-perl libxml-parser-perl libxml2 m4 man-db netbase po-debconf proj-data zlib1g-dev 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 4775kB/16.7MB of archives. After this operation, 48.1MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 file netbase bsdmainutils gettext-base groff-base libexpat1 libhtml-tagset-perl liburi-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl libxml2 man-db m4 autoconf autotools-dev automake html2text libglib2.0-0 libcroco3 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs dh-buildinfo libhdf5-serial-1.6.6-0 libjpeg62 libjpeg62-dev zlib1g-dev libhdf5-serial-dev proj-data libproj0 libproj-dev Authentication warning overridden. Get:1 http://ftpmaster.internal karmic/universe libhdf5-serial-1.6.6-0 1.6.6-4ubuntu1 [689kB] Get:2 http://ftpmaster.internal karmic/universe libhdf5-serial-dev 1.6.6-4ubuntu1 [835kB] Get:3 http://ftpmaster.internal karmic/universe proj-data 4.6.1-4 [2924kB] Get:4 http://ftpmaster.internal karmic/universe libproj0 4.6.1-4 [136kB] Get:5 http://ftpmaster.internal karmic/universe libproj-dev 4.6.1-4 [190kB] dpkg-preconfigure: unable to re-open stdin: Fetched 4775kB in 0s (24.4MB/s) Selecting previously deselected package libmagic1. (Reading database ... 9293 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.03-1ubuntu1_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.03-1ubuntu1_amd64.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../netbase_4.34ubuntu2_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu4_amd64.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-6ubuntu2_amd64.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-22build1_amd64.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-4_amd64.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.37+dfsg-1ubuntu1_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.60-1_amd64.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.826-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build2_amd64.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.6.32.dfsg-5ubuntu4_amd64.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.5-1build1_amd64.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.13-1_amd64.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.63-3ubuntu1_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20090427.1_all.deb) ... Selecting previously deselected package automake. Unpacking automake (from .../automake_1%3a1.10.2-1ubuntu2_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-14_amd64.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.21.0-0ubuntu1_amd64.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.1-2_amd64.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-6ubuntu2_amd64.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.2.8ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-2_amd64.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.40.6-2_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.56ubuntu4_all.deb) ... Selecting previously deselected package dh-buildinfo. Unpacking dh-buildinfo (from .../dh-buildinfo_0.9_all.deb) ... Selecting previously deselected package libhdf5-serial-1.6.6-0. Unpacking libhdf5-serial-1.6.6-0 (from .../libhdf5-serial-1.6.6-0_1.6.6-4ubuntu1_amd64.deb) ... Selecting previously deselected package libjpeg62. Unpacking libjpeg62 (from .../libjpeg62_6b-14build1_amd64.deb) ... Selecting previously deselected package libjpeg62-dev. Unpacking libjpeg62-dev (from .../libjpeg62-dev_6b-14build1_amd64.deb) ... Selecting previously deselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.3.dfsg-13ubuntu1_amd64.deb) ... Selecting previously deselected package libhdf5-serial-dev. Unpacking libhdf5-serial-dev (from .../libhdf5-serial-dev_1.6.6-4ubuntu1_amd64.deb) ... Selecting previously deselected package proj-data. Unpacking proj-data (from .../proj-data_4.6.1-4_all.deb) ... Selecting previously deselected package libproj0. Unpacking libproj0 (from .../libproj0_4.6.1-4_amd64.deb) ... Selecting previously deselected package libproj-dev. Unpacking libproj-dev (from .../libproj-dev_4.6.1-4_amd64.deb) ... Setting up libmagic1 (5.03-1ubuntu1) ... Setting up file (5.03-1ubuntu1) ... Setting up netbase (4.34ubuntu2) ... Setting up bsdmainutils (6.1.10ubuntu4) ... Setting up gettext-base (0.17-6ubuntu2) ... Setting up groff-base (1.18.1.1-22build1) ... Setting up libexpat1 (2.0.1-4) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up liburi-perl (1.37+dfsg-1ubuntu1) ... Setting up libhtml-parser-perl (3.60-1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.826-1) ... Setting up libxml-parser-perl (2.36-1.1build2) ... Setting up libxml2 (2.6.32.dfsg-5ubuntu4) ... Setting up man-db (2.5.5-1build1) ... Building database of manual pages ... ... skipping, since this is a buildd Setting up m4 (1.4.13-1) ... Setting up autoconf (2.63-3ubuntu1) ... Setting up autotools-dev (20090427.1) ... Setting up automake (1:1.10.2-1ubuntu2) ... Setting up html2text (1.3.2a-14) ... Setting up libglib2.0-0 (2.21.0-0ubuntu1) ... Setting up libcroco3 (0.6.1-2) ... Setting up gettext (0.17-6ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (7.2.8ubuntu1) ... Setting up fdupes (1.50-PR2-2) ... Setting up intltool (0.40.6-2) ... Setting up cdbs (0.4.56ubuntu4) ... Setting up dh-buildinfo (0.9) ... Setting up libhdf5-serial-1.6.6-0 (1.6.6-4ubuntu1) ... Setting up libjpeg62 (6b-14build1) ... Setting up libjpeg62-dev (6b-14build1) ... Setting up zlib1g-dev (1:1.2.3.3.dfsg-13ubuntu1) ... Setting up libhdf5-serial-dev (1.6.6-4ubuntu1) ... Setting up proj-data (4.6.1-4) ... Setting up libproj0 (4.6.1-4) ... Setting up libproj-dev (4.6.1-4) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.9-9ubuntu1 make_3.81-5 dpkg-dev_1.14.24ubuntu2 g++-4.4_4.4.0-3ubuntu5 gcc-4.4_4.4.0-3ubuntu5 binutils_2.19.51.20090515-0ubuntu1 libstdc++6_4.4.0-3ubuntu5 libstdc++6-4.4-dev_4.4.0-3ubuntu5 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Sun May 17 12:08:34 2009 BST using DSA key ID 2A385C57 gpg: Can't check signature: public key not found dpkg-source: extracting cdo in cdo-1.3.1+dfsg dpkg-source: unpacking cdo_1.3.1+dfsg.orig.tar.gz dpkg-source: applying /home/buildd/build-1034643-2252188/cdo_1.3.1+dfsg-3.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package cdo dpkg-buildpackage: source version 1.3.1+dfsg-3 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean test -x debian/rules for i in ./config/config.guess ./config/config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean /usr/bin/make -C . -k clean distclean maintainer-clean make[1]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' make[1]: *** No rule to make target `clean'. make[1]: *** No rule to make target `distclean'. make[1]: *** No rule to make target `maintainer-clean'. make[1]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-makefile-build rm -f debian/stamp-makefile-check rm -f debian/stamp-autotools-files find . -name Makefile.in -delete rm -f src/config.h.in aclocal.m4 config/depcomp config/install-sh config/ltmain.sh config/missing configure INSTALL debian/rules build test -x debian/rules mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config/config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config/config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi autoreconf -if Can't exec "libtoolize": No such file or directory at /usr/bin/autoreconf line 188. Use of uninitialized value $libtoolize in pattern match (m//) at /usr/bin/autoreconf line 188. configure.ac:15: installing `config/install-sh' configure.ac:15: installing `config/missing' src/Makefile.am: installing `config/depcomp' Makefile.am: installing `./INSTALL' touch debian/stamp-autotools-files chmod a+x /build/buildd/cdo-1.3.1+dfsg/./configure cd . && CC="cc" CXX="g++" CFLAGS="-g -O2 -g -Wall -O2 -fPIC" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" /build/buildd/cdo-1.3.1+dfsg/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/cdo" --disable-maintainer-mode --disable-dependency-tracking --srcdir=. --with-zlib --with-hdf5 configure: WARNING: unrecognized options: --disable-maintainer-mode configuring cdo 1.3.1 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... none checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking for ar... ar checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... yes checking for working mmap... yes checking for mallinfo in -lmalloc... no checking for struct stat.st_blksize... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking for isnan... yes checking for getrlimit... yes checking for gethostname... yes checking for floor in -lm... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_create in -lpthread... yes checking whether a location for the PROJ library was specified... no checking whether a location for the ZLIB library was specified... yes checking whether a location for the SZLIB library was specified... no checking whether a location for the HDF5 library was specified... yes checking for H5Fopen in -lhdf5... yes checking for H5DSis_scale in -lhdf5_hl... no checking for GRIB support... yes checking for SERVICE support... yes checking for EXTRA support... yes checking for IEG support... yes checking for netcdf library... suppressed configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating cdo.spec config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. /usr/bin/make -C . make[1]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' Making all in src make[2]: Entering directory `/build/buildd/cdo-1.3.1+dfsg/src' /usr/bin/make all-am make[3]: Entering directory `/build/buildd/cdo-1.3.1+dfsg/src' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Arith.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Arithc.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Arithdays.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Arithlat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Cat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c CDItest.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Change.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Comp.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Compc.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Cond.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Cond2.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Condc.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Copy.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Del29feb.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Detrend.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Diff.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Echam5ini.c Echam5ini.c: In function 'import_e5ml': Echam5ini.c:122: warning: unused variable 'func' Echam5ini.c: In function 'export_e5ml': Echam5ini.c:282: warning: unused variable 'func' Echam5ini.c: In function 'import_e5res': Echam5ini.c:689: warning: unused variable 'func' Echam5ini.c: In function 'export_e5res': Echam5ini.c:1083: warning: unused variable 'func' Echam5ini.c: At top level: Echam5ini.c:93: warning: 'inivars_ml' defined but not used cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Enlarge.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Enlargegrid.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ensstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Exprf.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Filedes.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Fillmiss.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Filter.c Filter.c: In function 'Filter': Filter.c:164: warning: unused variable 'vtime0' Filter.c:164: warning: unused variable 'vdate0' Filter.c:169: warning: 'fmin' may be used uninitialized in this function Filter.c:169: warning: 'fmax' may be used uninitialized in this function cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Fldrms.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Fldstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Gengrid.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Gradsdes.c Gradsdes.c: In function 'dumpmap': Gradsdes.c:245: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:252: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:255: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:258: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:261: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:264: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:271: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:278: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:285: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:295: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:303: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:311: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:317: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:323: warning: ignoring return value of 'fread', declared with attribute warn_unused_result Gradsdes.c:329: warning: ignoring return value of 'fread', declared with attribute warn_unused_result cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Gridboxstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Gridcell.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Harmonic.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Histogram.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Importamsr.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Importcmsaf.c Importcmsaf.c: In function 'read_region': Importcmsaf.c:540: warning: unused variable 'datatype' Importcmsaf.c:540: warning: unused variable 'dataset' Importcmsaf.c:540: warning: unused variable 'file' Importcmsaf.c:539: warning: unused variable 'ysize' Importcmsaf.c:539: warning: unused variable 'xsize' Importcmsaf.c:535: warning: unused variable 'proj_tid' Importcmsaf.c:534: warning: unused variable 'proj_id' Importcmsaf.c:532: warning: unused variable 'memb_size' Importcmsaf.c:530: warning: unused variable 'func' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Importgrads.c Importgrads.c: In function 'Importgrads': Importgrads.c:199: warning: unused variable 'flen' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Info.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Input.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Intgrid.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Intgridtraj.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Intlevel.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Inttime.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Intntime.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Intyear.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Invert.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Invertlev.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Log.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Maskbox.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Mastrfu.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Math.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Merge.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Mergegrid.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Mergetime.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Merstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Monarith.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Mrotuv.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Mrotuvb.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ninfo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Nmltest.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Output.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Outputgmt.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Pinfo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Pressure.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Regres.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Remap.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Remapeta.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Replace.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Rotuv.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Runpctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Runstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Seascount.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Seaspctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Seasstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Selbox.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Select.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Select2.c Select2.c: In function 'pmlProcess': Select2.c:246: warning: unused variable 'len' Select2.c: At top level: Select2.c:79: warning: 'NumParameter' defined but not used cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Seloperator.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Selrec.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Seltime.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Set.c Set.c: In function 'Set': Set.c:98: warning: ignoring return value of 'fread', declared with attribute warn_unused_result cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Setbox.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Setgatt.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Setgrid.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Sethalo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Setmiss.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Setrange.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Setrcaname.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Settime.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Setzaxis.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Showinfo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Sinfo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Smooth9.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Sort.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Specinfo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Spectral.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Spectrum.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Split.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Splitrec.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Splitsel.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Splittime.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Splityear.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Subtrend.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Templates.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Test.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Tests.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timcount.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timeof.c Timeof.c: In function 'Timeof': Timeof.c:402: warning: unused variable 'sum2' Timeof.c:50: warning: unused variable 'gridID' Timeof.c:160: warning: 'time_space' may be used uninitialized in this function Timeof.c:172: warning: 'grid_space' may be used uninitialized in this function Timeof.c:241: warning: 'gridID2' may be used uninitialized in this function Timeof.c:56: warning: 'nts' may be used uninitialized in this function Timeof.c:59: warning: 'n' may be used uninitialized in this function Timeof.c:46: warning: 'nlevs' may be used uninitialized in this function Timeof.c:64: warning: 'missval' may be used uninitialized in this function Timeof.c:330: warning: 'cov' may be used uninitialized in this function cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timpctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timsort.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timselpctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timselstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timstat2.c Timstat2.c: In function 'Timstat2': Timstat2.c:46: warning: unused variable 'nmiss2' Timstat2.c:46: warning: unused variable 'nmiss1' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Timstat3.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Tinfo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Transpose.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Trend.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Trms.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Vardup.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Vargen.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Varrms.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Vertint.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Vertstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Vertwind.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Wind.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Writegrid.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Writerandom.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Yhourstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ydaypctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ydaystat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ydrunpctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ydrunstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ymonarith.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ymonpctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Ymonstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Yseaspctl.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Yseasstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Zonstat.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c cdilib.c cdilib.c: In function 'get_attsp': cdilib.c:9908: warning: unused variable 'func' cdilib.c: In function 'vlistInqNatts': cdilib.c:9998: warning: unused variable 'func' cdilib.c: In function 'vlistInqAtt': cdilib.c:10016: warning: unused variable 'func' cdilib.c: In function 'vlist_def_att': cdilib.c:10089: warning: unused variable 'func' cdilib.c: In function 'vlistCopyVarAtts': cdilib.c:10159: warning: unused variable 'func' cdilib.c: In function 'vlistDefVarZtype': cdilib.c:11582: warning: unused variable 'index' cdilib.c:11582: warning: unused variable 'nvars' cdilib.c: In function 'vlistInqVarZtype': cdilib.c:11596: warning: unused variable 'index' cdilib.c:11596: warning: unused variable 'nvars' cdilib.c: In function 'vlistDefVarZlevel': cdilib.c:11610: warning: unused variable 'index' cdilib.c:11610: warning: unused variable 'nvars' cdilib.c: In function 'vlistInqVarZlevel': cdilib.c:11624: warning: unused variable 'index' cdilib.c:11624: warning: unused variable 'nvars' cdilib.c: In function 'iegRead': cdilib.c:13285: warning: dereferencing type-punned pointer will break strict-aliasing rules cdilib.c:13291: warning: dereferencing type-punned pointer will break strict-aliasing rules cdilib.c: In function 'streamReadVarSlice': cdilib.c:21383: warning: unused variable 'ierr' cdilib.c: In function 'streamWriteVarSlice': cdilib.c:21463: warning: unused variable 'ierr' cdilib.c: In function 'cdfDefVar': cdilib.c:30610: warning: unused variable 'func' cdilib.c: In function 'cdfInqTimestep': cdilib.c:33781: warning: unused variable 'func' cdilib.c: In function 'encodePDS_ECMWF_local_Extension_1': cdilib.c:39093: warning: unused variable 'func' cdilib.c:39091: warning: unused variable 'isvn' cdilib.c: At top level: cdilib.c:3979: warning: 'taxis_copy' defined but not used cdilib.c:5899: warning: 'model_delete_entry' defined but not used cdilib.c:13702: warning: 'grid_delete_entry' defined but not used cdilib.c:13961: warning: 'defineYvals' defined but not used cdilib.c:17219: warning: 'zaxis_delete_entry' defined but not used cdilib.c:28300: warning: 'splitBasetime' defined but not used cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c commandline.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c exception.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c expr_yacc.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c expr_lex.c expr_lex.c:1254: warning: 'input' defined but not used cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c expr.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c cdo.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c cdo_pthread.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c cdo_vlist.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c field.c field.c: In function 'fldrms': field.c:281: warning: unused variable 'nmiss2' field.c:278: warning: unused variable 'nmiss1' field.c: In function 'varrms': field.c:332: warning: unused variable 'nmiss2' field.c:329: warning: unused variable 'nmiss1' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c fieldc.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c field2.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c fieldmer.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c fieldzon.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c gradsdeslib.c gradsdeslib.c: In function 'read_gradsdes': gradsdeslib.c:2241: warning: label 'err7e' defined but not used gradsdeslib.c:2237: warning: label 'err7d' defined but not used gradsdeslib.c:2233: warning: label 'err7c' defined but not used gradsdeslib.c:2229: warning: label 'err7b' defined but not used gradsdeslib.c:2225: warning: label 'err7a' defined but not used gradsdeslib.c:2221: warning: label 'err6a' defined but not used gradsdeslib.c:2192: warning: label 'err3' defined but not used cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c grid.c grid.c:1239: warning: 'gridWeightsOld' defined but not used cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c grid_gme.c grid_gme.c: In function 'glo_coor': grid_gme.c:743: warning: unused variable 'func' grid_gme.c: In function 'gme_grid': grid_gme.c:1327: warning: unused variable 'func' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c grid_lcc.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c grid_rot.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c griddes.c griddes.c: In function 'ntr2nlat': griddes.c:1439: warning: unused variable 'func' griddes.c: In function 'ntr2nlat_linear': griddes.c:1459: warning: unused variable 'func' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c griddes_nc.c griddes_nc.c: In function 'gridFromNCfile': griddes_nc.c:32: warning: unused variable 'func' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c griddes_h5.c griddes_h5.c:20: warning: 'nce' defined but not used cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c hetaeta.c hetaeta.c: In function 'hetaeta': hetaeta.c:93: warning: unused variable 'func' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c history.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c institution.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c interpol.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c job.c job.c: In function 'exp_run': job.c:727: warning: ignoring return value of 'system', declared with attribute warn_unused_result job.c:738: warning: ignoring return value of 'system', declared with attribute warn_unused_result job.c:741: warning: ignoring return value of 'system', declared with attribute warn_unused_result job.c:762: warning: ignoring return value of 'system', declared with attribute warn_unused_result cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c modules.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c namelist.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c normal.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c pipe.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c process.c process.c: In function 'processAddNvals': process.c:176: warning: unused variable 'func' process.c: In function 'processInqNvals': process.c:185: warning: unused variable 'func' process.c: In function 'processDelete': process.c:678: warning: unused variable 'processID' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c remaplib.c remaplib.c: In function 'remap_gradients': remaplib.c:5228: warning: unused variable 'func' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c timer.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c realtime.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c pstream.c pstream.c: In function 'cdoFinish': pstream.c:1244: warning: format '%lld' expects type 'long long int', but argument 4 has type 'long int' cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c table.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -DLOGPATH=/usr/log -c `test -f 'userlog.c' || echo './'`userlog.c userlog.c: In function 'cdolog': userlog.c:144: warning: ignoring return value of 'write', declared with attribute warn_unused_result cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c util.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c legendre.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c fourier.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c specspace.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c readline.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c juldate.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c vinterp.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c zaxis.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c par_io.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c pthread_debug.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c color.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c list.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c percentiles.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c nth_element.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c ecacore.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c ecautil.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c EcaIndices.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Hi.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c Wct.c cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c statistic.c statistic.c: In function 'lu_decomposition': statistic.c:404: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false cc -g -O2 -g -Wall -O2 -fPIC -Wl,-Bsymbolic-functions -Lyes/lib -Lyes/lib -o cdo Arith.o Arithc.o Arithdays.o Arithlat.o Cat.o CDItest.o Change.o Comp.o Compc.o Cond.o Cond2.o Condc.o Copy.o Del29feb.o Detrend.o Diff.o Echam5ini.o Enlarge.o Enlargegrid.o Ensstat.o Exprf.o Filedes.o Fillmiss.o Filter.o Fldrms.o Fldstat.o Gengrid.o Gradsdes.o Gridboxstat.o Gridcell.o Harmonic.o Histogram.o Importamsr.o Importcmsaf.o Importgrads.o Info.o Input.o Intgrid.o Intgridtraj.o Intlevel.o Inttime.o Intntime.o Intyear.o Invert.o Invertlev.o Log.o Maskbox.o Mastrfu.o Math.o Merge.o Mergegrid.o Mergetime.o Merstat.o Monarith.o Mrotuv.o Mrotuvb.o Ninfo.o Nmltest.o Output.o Outputgmt.o Pinfo.o Pressure.o Regres.o Remap.o Remapeta.o Replace.o Rotuv.o Runpctl.o Runstat.o Seascount.o Seaspctl.o Seasstat.o Selbox.o Select.o Select2.o Seloperator.o Selrec.o Seltime.o Set.o Setbox.o Setgatt.o Setgrid.o Sethalo.o Setmiss.o Setrange.o Setrcaname.o Settime.o Setzaxis.o Showinfo.o Sinfo.o Smooth9.o Sort.o Specinfo.o Spectral.o Spectrum.o Split.o Splitrec.o Splitsel.o Splittime.o Splityear.o Subtrend.o Templates.o Test.o Tests.o Timcount.o Timeof.o Timpctl.o Timsort.o Timselpctl.o Timselstat.o Timstat.o Timstat2.o Timstat3.o Tinfo.o Transpose.o Trend.o Trms.o Vardup.o Vargen.o Varrms.o Vertint.o Vertstat.o Vertwind.o Wind.o Writegrid.o Writerandom.o Yhourstat.o Ydaypctl.o Ydaystat.o Ydrunpctl.o Ydrunstat.o Ymonarith.o Ymonpctl.o Ymonstat.o Yseaspctl.o Yseasstat.o Zonstat.o cdilib.o commandline.o exception.o expr_yacc.o expr_lex.o expr.o cdo.o cdo_pthread.o cdo_vlist.o field.o fieldc.o field2.o fieldmer.o fieldzon.o gradsdeslib.o grid.o grid_gme.o grid_lcc.o grid_rot.o griddes.o griddes_nc.o griddes_h5.o hetaeta.o history.o institution.o interpol.o job.o modules.o namelist.o normal.o pipe.o process.o remaplib.o timer.o realtime.o pstream.o table.o userlog.o util.o legendre.o fourier.o specspace.o readline.o juldate.o vinterp.o zaxis.o par_io.o pthread_debug.o color.o list.o percentiles.o nth_element.o ecacore.o ecautil.o EcaIndices.o Hi.o Wct.o statistic.o -lhdf5 -lpthread -lm -lz cc -DHAVE_CONFIG_H -I. -Iyes/include -Iyes/include -g -O2 -g -Wall -O2 -fPIC -c cdotest.c cdotest.c:405: warning: 'testHi' defined but not used cdotest.c:472: warning: 'testSeascount' defined but not used cc -g -O2 -g -Wall -O2 -fPIC -Wl,-Bsymbolic-functions -Lyes/lib -Lyes/lib -o cdotest cdilib.o cdotest.o -lhdf5 -lpthread -lm -lz make[3]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg/src' make[2]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg/src' make[2]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' make[1]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' touch debian/stamp-makefile-build /usr/bin/make -C . check make[1]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' Making check in src make[2]: Entering directory `/build/buildd/cdo-1.3.1+dfsg/src' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg/src' make[2]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' make[1]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' touch debian/stamp-makefile-check /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_clean -k dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config/config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config/config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi autoreconf -if Can't exec "libtoolize": No such file or directory at /usr/bin/autoreconf line 188. Use of uninitialized value $libtoolize in pattern match (m//) at /usr/bin/autoreconf line 188. /usr/bin/make -C . install DESTDIR=/build/buildd/cdo-1.3.1+dfsg/debian/cdo/ make[1]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' /bin/bash ./config.status --recheck running CONFIG_SHELL=/bin/bash /bin/bash /build/buildd/cdo-1.3.1+dfsg/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --libexecdir=${prefix}/lib/cdo --disable-maintainer-mode --disable-dependency-tracking --srcdir=. --with-zlib --with-hdf5 build_alias=x86_64-linux-gnu CC=cc CFLAGS=-g -O2 -g -Wall -O2 -fPIC LDFLAGS=-Wl,-Bsymbolic-functions CPPFLAGS= --no-create --no-recursion configure: WARNING: unrecognized options: --disable-maintainer-mode configuring cdo 1.3.1 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of cc... none checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking for ar... ar checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking how to run the C preprocessor... cc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... yes checking for working mmap... yes checking for mallinfo in -lmalloc... no checking for struct stat.st_blksize... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking for isnan... yes checking for getrlimit... yes checking for gethostname... yes checking for floor in -lm... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_create in -lpthread... yes checking whether a location for the PROJ library was specified... no checking whether a location for the ZLIB library was specified... yes checking whether a location for the SZLIB library was specified... no checking whether a location for the HDF5 library was specified... yes checking for H5Fopen in -lhdf5... yes checking for H5DSis_scale in -lhdf5_hl... no checking for GRIB support... yes checking for SERVICE support... yes checking for EXTRA support... yes checking for IEG support... yes checking for netcdf library... suppressed configure: creating ./config.status configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. /bin/bash ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating cdo.spec config.status: creating src/config.h config.status: src/config.h is unchanged config.status: executing depfiles commands make[1]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' make[1]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' Making install in src make[2]: Entering directory `/build/buildd/cdo-1.3.1+dfsg/src' make[3]: Entering directory `/build/buildd/cdo-1.3.1+dfsg/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/cdo-1.3.1+dfsg/debian/cdo//usr/bin" /usr/bin/install -c 'cdo' '/build/buildd/cdo-1.3.1+dfsg/debian/cdo//usr/bin/cdo' make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg/src' make[2]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg/src' make[2]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' make[3]: Entering directory `/build/buildd/cdo-1.3.1+dfsg' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' make[2]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' make[1]: Leaving directory `/build/buildd/cdo-1.3.1+dfsg' dh_installdirs -pcdo dh_installdocs -pcdo ./README ./NEWS ./AUTHORS dh_installexamples -pcdo dh_installman -pcdo dh_installinfo -pcdo dh_installmenu -pcdo dh_installcron -pcdo dh_installinit -pcdo dh_installdebconf -pcdo dh_installemacsen -pcdo dh_installcatalogs -pcdo dh_installpam -pcdo dh_installlogrotate -pcdo dh_installlogcheck -pcdo dh_installchangelogs -pcdo dh_installudev -pcdo dh_lintian -pcdo dh_install -pcdo dh_link -pcdo dh_installmime -pcdo dh_buildinfo dh_strip -pcdo dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: cdo dh_strip debug symbol extraction: packages to act on: cdo dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/cdo-dbgsym/DEBIAN/control, package cdo-dbgsym, directory ./debian/cdo-dbgsym pkgstriptranslations: cdo-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `/build/buildd/cdo-1.3.1+dfsg/debian/cdo-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `cdo-dbgsym' in `../cdo-dbgsym_1.3.1+dfsg-3_amd64.ddeb'. dh_compress -pcdo dh_fixperms -pcdo dh_makeshlibs -pcdo dh_installdeb -pcdo dh_perl -pcdo dh_shlibdeps -pcdo dpkg-shlibdeps: warning: dependency on libz.so.1 could be avoided if "debian/cdo/usr/bin/cdo" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -pcdo # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/cdo/usr/share/doc ] || \ [ ! -d debian/cdo/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/cdo/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/cdo/usr/share/doc/cdo; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/cdo/usr/share/doc/cdo/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in cdo to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/cdo/usr/share/gnome/help ]; then \ cd debian/cdo && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p cdo dh_md5sums -pcdo dh_builddeb -pcdo pkgstriptranslations: processing control file: ./debian/cdo/DEBIAN/control, package cdo, directory ./debian/cdo pkgstriptranslations: cdo does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/cdo/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `cdo' in `../cdo_1.3.1+dfsg-3_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../cdo_1.3.1+dfsg-3_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20090518-1749 Publishing debug debs. chroot-autobuild/build/buildd/cdo_1.3.1+dfsg-3_amd64.deb: new debian package, version 2.0. size 1159366 bytes: control archive= 924 bytes. 647 bytes, 14 lines control 614 bytes, 10 lines md5sums Package: cdo Version: 1.3.1+dfsg-3 Architecture: amd64 Maintainer: Ubuntu MOTU Developers Original-Maintainer: Alastair McKinstry Installed-Size: 2272 Depends: libc6 (>= 2.4), libhdf5-serial-1.6.6-0 | libhdf5-1.6.6-0, zlib1g (>= 1:1.1.4) Section: utils Priority: optional Homepage: http://www.mpimet.mpg.de/fileadmin/software/cdo/ Description: Climate Data Operators Climate Data Operators are a collection of command line Operators to manipulate and analyse Climate model Data. Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG. There are more than 400 operators available. chroot-autobuild/build/buildd/cdo_1.3.1+dfsg-3_amd64.deb: drwxr-xr-x root/root 0 2009-05-18 17:49 ./ drwxr-xr-x root/root 0 2009-05-18 17:49 ./usr/ drwxr-xr-x root/root 0 2009-05-18 17:49 ./usr/bin/ -rwxr-xr-x root/root 2250784 2009-05-18 17:49 ./usr/bin/cdo drwxr-xr-x root/root 0 2009-05-18 17:49 ./usr/share/ drwxr-xr-x root/root 0 2009-05-18 17:49 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-05-18 17:49 ./usr/share/doc/cdo/ -rw-r--r-- root/root 371 2009-05-18 17:47 ./usr/share/doc/cdo/changelog.Debian.gz -rw-r--r-- root/root 146 2009-05-10 20:02 ./usr/share/doc/cdo/AUTHORS -rw-r--r-- root/root 1659 2009-05-18 17:49 ./usr/share/doc/cdo/cdo.spec -rw-r--r-- root/root 2155 2009-05-10 20:02 ./usr/share/doc/cdo/README -rw-r--r-- root/root 20 2009-05-18 17:47 ./usr/share/doc/cdo/TODO.Debian -rw-r--r-- root/root 647 2009-05-18 17:47 ./usr/share/doc/cdo/copyright -rw-r--r-- root/root 2046 2009-05-18 17:49 ./usr/share/doc/cdo/buildinfo.gz -rw-r--r-- root/root 3638 2009-05-10 20:02 ./usr/share/doc/cdo/NEWS.gz -rw-r--r-- root/root 4903 2009-05-10 20:02 ./usr/share/doc/cdo/OPERATORS.gz cdo_1.3.1+dfsg-3_amd64.changes: Format: 1.8 Date: Sun, 17 May 2009 11:46:55 +0100 Source: cdo Binary: cdo Architecture: amd64 Version: 1.3.1+dfsg-3 Distribution: karmic Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Alastair McKinstry Description: cdo - Climate Data Operators Closes: 529013 Changes: cdo (1.3.1+dfsg-3) unstable; urgency=low . * Add autoconf dependency. Closes: #529013. Checksums-Sha1: 1b053d0d85897925f70b69b87b5e06c538790347 1159366 cdo_1.3.1+dfsg-3_amd64.deb Checksums-Sha256: ea535663f67d195a43dd1385e1859bf98cb88af923e730c243435cbf3289a35b 1159366 cdo_1.3.1+dfsg-3_amd64.deb Files: abd2d270e13e2fbe983ca88c9467c745 1159366 utils optional cdo_1.3.1+dfsg-3_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/cdo-1.3.1+dfsg ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-1034643-2252188/chroot-autobuild --purge groff-base libglib2.0-0 m4 gettext file zlib1g-dev libhtml-parser-perl intltool libwww-perl liburi-perl libhtml-tree-perl autotools-dev po-debconf proj-data libxml-parser-perl libcroco3 libhtml-tagset-perl libxml2 netbase automake libjpeg62 man-db intltool-debian libhdf5-serial-1.6.6-0 libproj-dev cdbs html2text libjpeg62-dev gettext-base debhelper dh-buildinfo libhdf5-serial-dev libmagic1 libexpat1 bsdmainutils fdupes libproj0 autoconf (Reading database ... 11225 files and directories currently installed.) Removing libproj-dev ... Removing cdbs ... Removing dh-buildinfo ... Removing libhdf5-serial-dev ... Removing fdupes ... Removing libproj0 ... Purging configuration files for libproj0 ... Removing zlib1g-dev ... Removing intltool ... Removing proj-data ... Removing libxml-parser-perl ... Removing automake ... Removing libhdf5-serial-1.6.6-0 ... Removing libjpeg62-dev ... Removing debhelper ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing file ... Purging configuration files for file ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing autotools-dev ... Removing po-debconf ... Removing netbase ... Purging configuration files for netbase ... Removing libjpeg62 ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db/examples' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/bug/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/lib/man-db' not empty so not removed. Removing intltool-debian ... Removing html2text ... Purging configuration files for html2text ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libhtml-tagset-perl ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing gettext-base ... Removing libglib2.0-0 ... Purging configuration files for libglib2.0-0 ... Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20090518-1749 Build needed 00:01:46, 25624k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '1034643-2252188'] Scanning for processes to kill in build 1034643-2252188... Scanning for processes to kill in build /home/buildd/build-1034643-2252188/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '1034643-2252188'] Unmounting chroot for build 1034643-2252188... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '1034643-2252188'] Removing build 1034643-2252188