centrifuge 1.0.3-1 source package in Ubuntu


centrifuge (1.0.3-1) unstable; urgency=medium

  * New upstream release

 -- Andreas Tille <email address hidden>  Fri, 02 Mar 2018 19:59:50 +0100

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Uploaded by:
Debian Med on 2018-03-02
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Cosmic release on 2018-05-05 universe misc


File Size SHA-256 Checksum
centrifuge_1.0.3-1.dsc 1.9 KiB 6816b331e03ffd3de42c5f5b93c6bf59c2e59dc7982cf8bb38beca33596ce2c4
centrifuge_1.0.3.orig.tar.gz 684.8 KiB 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343
centrifuge_1.0.3-1.debian.tar.xz 6.3 KiB b6a205207297e43644e716d547a943a30f2b550aae1bca1fd539fea5eff16cd9

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Binary packages built by this source

centrifuge: rapid and memory-efficient system for classification of DNA sequences

 Centrifuge is a very rapid and memory-efficient system for the
 classification of DNA sequences from microbial samples, with better
 sensitivity than and comparable accuracy to other leading systems. The
 system uses a novel indexing scheme based on the Burrows-Wheeler
 transform (BWT) and the Ferragina-Manzini (FM) index, optimized
 specifically for the metagenomic classification problem. Centrifuge
 requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
 genomes) yet provides very fast classification speed, allowing it to
 process a typical DNA sequencing run within an hour. Together these
 advances enable timely and accurate analysis of large metagenomics data
 sets on conventional desktop computers.

centrifuge-dbgsym: debug symbols for centrifuge