centrifuge 1.0.3-2 source package in Ubuntu


centrifuge (1.0.3-2) unstable; urgency=medium

  [ Steffen Moeller ]
  * d/u/metadata:
    - added RRIDs
    - yamllint clean

  [ Jelmer Vernooń≥ ]
  * Use secure copyright file specification URI.

  [ Andreas Tille ]
  * Do not report beta versions in watch file
  * Fix Perl interpreter path
  * Point Vcs fields to salsa.debian.org
  * Standards-Version: 4.3.0
  * Remove non-helpful docs

 -- Andreas Tille <email address hidden>  Mon, 07 Jan 2019 09:25:30 +0100

Upload details

Uploaded by:
Debian Med on 2019-01-07
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Eoan release on 2019-04-18 universe misc
Disco release on 2019-01-07 universe misc


File Size SHA-256 Checksum
centrifuge_1.0.3-2.dsc 1.9 KiB c19862a966b790542990a86f6614166fa15537999f7214356efe38a1bee7c0d5
centrifuge_1.0.3.orig.tar.gz 684.8 KiB 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343
centrifuge_1.0.3-2.debian.tar.xz 6.6 KiB 16ef5b51e01c8980a90907db7fd5adc73777b5ccd7c32e5c80b69dad7e7e1655

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Binary packages built by this source

centrifuge: rapid and memory-efficient system for classification of DNA sequences

 Centrifuge is a very rapid and memory-efficient system for the
 classification of DNA sequences from microbial samples, with better
 sensitivity than and comparable accuracy to other leading systems. The
 system uses a novel indexing scheme based on the Burrows-Wheeler
 transform (BWT) and the Ferragina-Manzini (FM) index, optimized
 specifically for the metagenomic classification problem. Centrifuge
 requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
 genomes) yet provides very fast classification speed, allowing it to
 process a typical DNA sequencing run within an hour. Together these
 advances enable timely and accurate analysis of large metagenomics data
 sets on conventional desktop computers.

centrifuge-dbgsym: debug symbols for centrifuge