centrifuge 1.0.3-3 source package in Ubuntu


centrifuge (1.0.3-3) unstable; urgency=medium

  * Use 2to3 to port to Python3
    Closes: #936281
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * use dh-python

 -- Andreas Tille <email address hidden>  Tue, 10 Sep 2019 08:20:22 +0200

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Uploaded by:
Debian Med on 2019-09-10
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release on 2019-10-25 universe misc


File Size SHA-256 Checksum
centrifuge_1.0.3-3.dsc 2.0 KiB be500e9faba725f30598c067201ad92f317df4551f5d318f1b2fb7a271ff1cbc
centrifuge_1.0.3.orig.tar.gz 684.8 KiB 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343
centrifuge_1.0.3-3.debian.tar.xz 10.7 KiB 9d98bfa86834576bb1310f2ee73ca1d1ae3d9d9ec8901011be2ec1a25efb2609

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Binary packages built by this source

centrifuge: rapid and memory-efficient system for classification of DNA sequences

 Centrifuge is a very rapid and memory-efficient system for the
 classification of DNA sequences from microbial samples, with better
 sensitivity than and comparable accuracy to other leading systems. The
 system uses a novel indexing scheme based on the Burrows-Wheeler
 transform (BWT) and the Ferragina-Manzini (FM) index, optimized
 specifically for the metagenomic classification problem. Centrifuge
 requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
 genomes) yet provides very fast classification speed, allowing it to
 process a typical DNA sequencing run within an hour. Together these
 advances enable timely and accurate analysis of large metagenomics data
 sets on conventional desktop computers.

centrifuge-dbgsym: debug symbols for centrifuge