centrifuge 1.0.3~beta-2 source package in Ubuntu


centrifuge (1.0.3~beta-2) unstable; urgency=medium

  * Move hisat2 and jellyfish to Build-Depends to make sure package builds
    only on those architectures where it can be installed later
  * -msse2 is already enabled by default on amd64 (which is the only
    architecture the package runs anyway)
    Closes: #890378
  * debhelper 11

 -- Andreas Tille <email address hidden>  Wed, 14 Feb 2018 14:18:27 +0100

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Uploaded by:
Debian Med on 2018-02-14
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic release on 2018-04-09 universe misc


File Size SHA-256 Checksum
centrifuge_1.0.3~beta-2.dsc 2.0 KiB 7ac97067515fa5b0cb7e2e6c1c0a8754db1aa2489cce5f9e7e2cc03c72bc34a4
centrifuge_1.0.3~beta.orig.tar.gz 697.5 KiB 9561f0b106f66e966b10e5add1ffe4507eb02a65a69741e07b0f6f24a240ccea
centrifuge_1.0.3~beta-2.debian.tar.xz 6.4 KiB 8b1d4ace4c5ca3c18d68df34e379563bc30b79af2c0350d987903e77430253b5

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Binary packages built by this source

centrifuge: rapid and memory-efficient system for classification of DNA sequences

 Centrifuge is a very rapid and memory-efficient system for the
 classification of DNA sequences from microbial samples, with better
 sensitivity than and comparable accuracy to other leading systems. The
 system uses a novel indexing scheme based on the Burrows-Wheeler
 transform (BWT) and the Ferragina-Manzini (FM) index, optimized
 specifically for the metagenomic classification problem. Centrifuge
 requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
 genomes) yet provides very fast classification speed, allowing it to
 process a typical DNA sequencing run within an hour. Together these
 advances enable timely and accurate analysis of large metagenomics data
 sets on conventional desktop computers.

centrifuge-dbgsym: debug symbols for centrifuge