https://launchpad.net/ubuntu/+source/clipper/2.1.20130601-2.1ubuntu2/+build/14851092 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-004 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:58 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 May 20:06:46 ntpdate[1819]: adjust time server 10.211.37.1 offset 0.060769 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14851092 /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-14851092 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14851092 Starting target for build PACKAGEBUILD-14851092 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14851092 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14851092 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14851092 Updating target for build PACKAGEBUILD-14851092 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf Packages [967 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe armhf Packages [8316 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4974 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf Packages [46.1 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [28.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf Packages [207 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [173 kB] Fetched 15.7 MB in 6s (2641 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files base-passwd bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libmount1 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libreadline7 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libusb-0.1-4 libuuid1 mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tar tzdata util-linux 67 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 37.4 MB of archives. After this operation, 1008 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main armhf base-files armhf 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo6 armhf 6.1+20180210-2ubuntu2 [71.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf bash armhf 4.4.18-2ubuntu2 [552 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf bsdutils armhf 1:2.31.1-0.4ubuntu4 [55.3 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf tar armhf 1.30+dfsg-1 [218 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf dpkg armhf 1.19.0.5ubuntu3 [1096 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main armhf libext2fs2 armhf 1.44.1-2 [145 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fsprogs armhf 1.44.1-2 [369 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-bin armhf 6.1+20180210-2ubuntu2 [155 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libperl5.26 armhf 5.26.2-3 [2881 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl armhf 5.26.2-3 [201 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf perl-base armhf 5.26.2-3 [1290 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw6 armhf 6.1+20180210-2ubuntu2 [104 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libuuid1 armhf 2.31.1-0.4ubuntu4 [19.2 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libblkid1 armhf 2.31.1-0.4ubuntu4 [112 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libfdisk1 armhf 2.31.1-0.4ubuntu4 [151 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libmount1 armhf 2.31.1-0.4ubuntu4 [122 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsmartcols1 armhf 2.31.1-0.4ubuntu4 [74.3 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf fdisk armhf 2.31.1-0.4ubuntu4 [97.8 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf util-linux armhf 2.31.1-0.4ubuntu4 [845 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf base-passwd armhf 3.5.45 [46.0 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf mount armhf 2.31.1-0.4ubuntu4 [99.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf libgomp1 armhf 8.1.0-1ubuntu3 [66.6 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-8-base armhf 8.1.0-1ubuntu3 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++6 armhf 8.1.0-1ubuntu3 [349 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main armhf libcc1-0 armhf 8.1.0-1ubuntu3 [32.7 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main armhf libatomic1 armhf 8.1.0-1ubuntu3 [7052 B] Get:30 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc1 armhf 1:8.1.0-1ubuntu3 [37.0 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main armhf libcap-ng0 armhf 0.7.9-1 [10.1 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main armhf libcom-err2 armhf 1.44.1-2 [8612 B] Get:33 http://ftpmaster.internal/ubuntu cosmic/main armhf libgpg-error0 armhf 1.31-1 [48.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main armhf libss2 armhf 1.44.1-2 [9388 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses5 armhf 6.1+20180210-2ubuntu2 [74.8 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw5 armhf 6.1+20180210-2ubuntu2 [95.3 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo5 armhf 6.1+20180210-2ubuntu2 [67.4 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf libgmp10 armhf 2:6.1.2+dfsg-3 [182 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main armhf libp11-kit0 armhf 0.23.10-2 [162 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main armhf libprocps6 armhf 2:3.3.12-3ubuntu2 [28.5 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses6 armhf 6.1+20180210-2ubuntu2 [78.5 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main armhf procps armhf 2:3.3.12-3ubuntu2 [213 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main armhf libargon2-0 armhf 0~20161029-2 [20.5 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf readline-common all 7.0-5 [52.2 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libreadline7 armhf 7.0-5 [102 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsqlite3-0 armhf 3.23.1-1 [425 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main armhf tzdata all 2018e-1 [188 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main armhf libbinutils armhf 2.30-17ubuntu1 [309 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-common armhf 2.30-17ubuntu1 [193 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils armhf 2.30-17ubuntu1 [3344 B] Get:51 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-arm-linux-gnueabihf armhf 2.30-17ubuntu1 [2175 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main armhf libasan4 armhf 7.3.0-18ubuntu2 [328 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main armhf libubsan0 armhf 7.3.0-18ubuntu2 [109 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main armhf libcilkrts5 armhf 7.3.0-18ubuntu2 [35.9 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main armhf g++-7 armhf 7.3.0-18ubuntu2 [6050 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7 armhf 7.3.0-18ubuntu2 [5948 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++-7-dev armhf 7.3.0-18ubuntu2 [1536 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc-7-dev armhf 7.3.0-18ubuntu2 [708 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp-7 armhf 7.3.0-18ubuntu2 [5295 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7-base armhf 7.3.0-18ubuntu2 [19.0 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp armhf 4:7.3.0-3ubuntu3 [27.6 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc armhf 4:7.3.0-3ubuntu3 [5228 B] Get:63 http://ftpmaster.internal/ubuntu cosmic/main armhf g++ armhf 4:7.3.0-3ubuntu3 [1600 B] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main armhf build-essential armhf 12.5ubuntu2 [4732 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main armhf e2fslibs armhf 1.44.1-2 [2704 B] Get:68 http://ftpmaster.internal/ubuntu cosmic/main armhf libcomerr2 armhf 1.44.1-2 [2692 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main armhf libusb-0.1-4 armhf 2:0.1.12-32 [15.6 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf pinentry-curses armhf 1.1.0-1build1 [31.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.4 MB in 1s (26.0 MB/s) (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_armhf.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:armhf. (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:armhf (6.1+20180210-2ubuntu2) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_armhf.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_armhf.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-1_armhf.deb ... Unpacking tar (1.30+dfsg-1) over (1.29b-2) ... Setting up tar (1.30+dfsg-1) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_armhf.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12387 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Mon May 7 20:07:21 UTC 2018. Universal Time is now: Mon May 7 20:07:21 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up mount (2.31.1-0.4ubuntu4) ... Setting up perl-modules-5.26 (5.26.2-3) ... Setting up libprocps6:armhf (2:3.3.12-3ubuntu2) ... Setting up libargon2-0:armhf (0~20161029-2) ... Setting up gcc-7-base:armhf (7.3.0-18ubuntu2) ... Setting up binutils-common:armhf (2.30-17ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:armhf (5.26.2-3) ... Setting up libsqlite3-0:armhf (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:armhf (1.44.1-2) ... Setting up libncurses6:armhf (6.1+20180210-2ubuntu2) ... Setting up libusb-0.1-4:armhf (2:0.1.12-32) ... Setting up libasan4:armhf (7.3.0-18ubuntu2) ... Setting up libbinutils:armhf (2.30-17ubuntu1) ... Setting up libcilkrts5:armhf (7.3.0-18ubuntu2) ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14851092 armhf cosmic-proposed -c chroot:build-PACKAGEBUILD-14851092 --arch=armhf --dist=cosmic-proposed --nolog clipper_2.1.20130601-2.1ubuntu2.dsc Initiating build PACKAGEBUILD-14851092 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:58 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-004.buildd +==============================================================================+ | clipper 2.1.20130601-2.1ubuntu2 (armhf) 07 May 2018 20:07 | +==============================================================================+ Package: clipper Version: 2.1.20130601-2.1ubuntu2 Source Version: 2.1.20130601-2.1ubuntu2 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/clipper-lAI_XN/clipper-2.1.20130601' with '<>' I: NOTICE: Log filtering will replace 'build/clipper-lAI_XN' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14851092/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clipper_2.1.20130601-2.1ubuntu2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-lgGV21/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-lgGV21/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lgGV21/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-lgGV21/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lgGV21/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-lgGV21/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (124 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-lgGV21/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), autotools-dev, dh-autoreconf, fftw-dev, gfortran, libccp4-dev, libmmdb-dev, sfftw-dev Filtered Build-Depends: debhelper (>= 9), autotools-dev, dh-autoreconf, fftw-dev, gfortran, libccp4-dev, libmmdb-dev, sfftw-dev dpkg-deb: building package 'sbuild-build-depends-clipper-dummy' in '/<>/resolver-MkSahD/apt_archive/sbuild-build-depends-clipper-dummy.deb'. Ign:1 copy:/<>/resolver-MkSahD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-MkSahD/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-MkSahD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-MkSahD/apt_archive ./ Sources [254 B] Get:5 copy:/<>/resolver-MkSahD/apt_archive ./ Packages [571 B] Fetched 2944 B in 0s (120 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clipper build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcroco3 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libltdl7 libmagic-mgc libmagic1 libmmdb-dev libmmdb0 libmmdb2-0 libnl-3-200 libnl-route-3-200 libopenmpi2 libpciaccess0 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sfftw-dev sfftw2 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz mpi-defaults-bin gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff libhwloc-contrib-plugins pciutils libtool-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers openmpi-bin libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcroco3 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libltdl7 libmagic-mgc libmagic1 libmmdb-dev libmmdb0 libmmdb2-0 libnl-3-200 libnl-route-3-200 libopenmpi2 libpciaccess0 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sbuild-build-depends-clipper-dummy sfftw-dev sfftw2 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 25.9 MB of archives. After this operation, 85.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-MkSahD/apt_archive ./ sbuild-build-depends-clipper-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf libbsd0 armhf 0.8.7-1 [40.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main armhf man-db armhf 2.8.3-2 [993 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe armhf libmmdb0 armhf 1.25.5-2 [274 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libmagic-mgc armhf 1:5.33-2 [193 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libmagic1 armhf 1:5.33-2 [63.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf file armhf 1:5.33-2 [22.1 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main armhf libglib2.0-0 armhf 2.56.1-2ubuntu1 [1014 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main armhf libicu60 armhf 60.2-3ubuntu3 [7797 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main armhf libxml2 armhf 2.9.4+dfsg1-6.1ubuntu1 [567 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext-base armhf 0.19.8.1-6build1 [46.2 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main armhf autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main armhf automake all 1:1.15.1-3ubuntu2 [509 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main armhf autopoint all 0.19.8.1-6build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libtool all 2.4.6-2.1 [195 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-autoreconf all 17 [15.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main armhf libarchive-zip-perl all 1.60-1 [83.9 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main armhf libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-strip-nondeterminism all 0.041-1 [5188 B] Get:27 http://ftpmaster.internal/ubuntu cosmic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext armhf 0.19.8.1-6build1 [834 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main armhf po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main armhf debhelper all 11.2.1ubuntu1 [906 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libltdl7 armhf 2.4.6-2.1 [35.8 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/universe armhf libhwloc5 armhf 1.11.10-1 [83.6 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main armhf libnl-3-200 armhf 3.2.29-0ubuntu3 [45.8 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main armhf libnl-route-3-200 armhf 3.2.29-0ubuntu3 [123 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main armhf libibverbs1 armhf 17.1-2 [40.0 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf libpciaccess0 armhf 0.14-1 [15.5 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf ocl-icd-libopencl1 armhf 2.2.11-1ubuntu1 [28.7 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/universe armhf libhwloc-plugins armhf 1.11.10-1 [10.9 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/universe armhf libopenmpi2 armhf 2.1.1-8 [1797 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/universe armhf fftw2 armhf 2.1.5-4.2 [196 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/universe armhf fftw-dev armhf 2.1.5-4.2 [217 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main armhf libgfortran4 armhf 7.3.0-18ubuntu2 [201 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main armhf libgfortran-7-dev armhf 7.3.0-18ubuntu2 [249 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main armhf gfortran-7 armhf 7.3.0-18ubuntu2 [5632 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main armhf gfortran armhf 4:7.3.0-3ubuntu3 [1352 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/universe armhf libmmdb-dev armhf 1.25.5-2 [96.3 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf libmmdb2-0 armhf 2.0.5-1 [266 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/universe armhf sfftw2 armhf 2.1.5-4.2 [183 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/universe armhf sfftw-dev armhf 2.1.5-4.2 [205 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf libccp4-data all 6.5.1-1 [61.3 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf libccp4c0 armhf 6.5.1-1 [74.1 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf libccp4f0 armhf 6.5.1-1 [205 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf libccp4-dev armhf 6.5.1-1 [41.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.9 MB in 2s (14.8 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.0-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_armhf.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmmdb0:armhf. Preparing to unpack .../05-libmmdb0_1.25.5-2_armhf.deb ... Unpacking libmmdb0:armhf (1.25.5-2) ... Selecting previously unselected package libmagic-mgc. 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Setting up libicu60:armhf (60.2-3ubuntu3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libgfortran4:armhf (7.3.0-18ubuntu2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.7-1) ... Setting up libccp4-data (6.5.1-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:armhf (1:5.33-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:armhf (2.4.6-2.1) ... Setting up libgfortran-7-dev:armhf (7.3.0-18ubuntu2) ... Setting up libpciaccess0:armhf (0.14-1) ... Setting up gfortran-7 (7.3.0-18ubuntu2) ... Setting up libmmdb2-0:armhf (2.0.5-1) ... Setting up ocl-icd-libopencl1:armhf (2.2.11-1ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:armhf (3.2.29-0ubuntu3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libmmdb0:armhf (1.25.5-2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up gfortran (4:7.3.0-3ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libccp4c0:armhf (6.5.1-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libmmdb-dev (1.25.5-2) ... Setting up libccp4f0:armhf (6.5.1-1) ... Setting up libnl-route-3-200:armhf (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:armhf (1.11.10-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libccp4-dev:armhf (6.5.1-1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:armhf (17.1-2) ... Setting up po-debconf (1.0.20) ... Setting up libopenmpi2:armhf (2.1.1-8) ... Setting up sfftw2 (2.1.5-4.2) ... Setting up sfftw-dev (2.1.5-4.2) ... Setting up fftw2 (2.1.5-4.2) ... Setting up fftw-dev (2.1.5-4.2) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-clipper-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-18ubuntu2 gcc-7_7.3.0-18ubuntu2 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-18ubuntu2 libstdc++6_8.1.0-1ubuntu3 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-arm-linux-gnueabihf_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-18ubuntu2 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 fftw-dev_2.1.5-4.2 fftw2_2.1.5-4.2 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-18ubuntu2 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-18ubuntu2 gcc-7-base_7.3.0-18ubuntu2 gcc-8-base_8.1.0-1ubuntu3 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gfortran_4:7.3.0-3ubuntu3 gfortran-7_7.3.0-18ubuntu2 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-18ubuntu2 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu3 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu3 libccp4-data_6.5.1-1 libccp4-dev_6.5.1-1 libccp4c0_6.5.1-1 libccp4f0_6.5.1-1 libcilkrts5_7.3.0-18ubuntu2 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libext2fs2_1.44.1-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-18ubuntu2 libgcc1_1:8.1.0-1ubuntu3 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-18ubuntu2 libgfortran4_7.3.0-18ubuntu2 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu3 libgpg-error0_1.31-1 libhogweed4_3.4-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs1_17.1-2 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl7_2.4.6-2.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmmdb-dev_1.25.5-2 libmmdb0_1.25.5-2 libmmdb2-0_2.0.5-1 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libopenmpi2_2.1.1-8 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-18ubuntu2 libstdc++6_8.1.0-1ubuntu3 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-18ubuntu2 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-clipper-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sfftw-dev_2.1.5-4.2 sfftw2_2.1.5-4.2 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-1 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon May 7 19:48:32 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clipper_2.1.20130601-2.1ubuntu2.dsc dpkg-source: info: extracting clipper in clipper-2.1.20130601 dpkg-source: info: unpacking clipper_2.1.20130601.orig.tar.bz2 dpkg-source: info: unpacking clipper_2.1.20130601-2.1ubuntu2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14851092 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14851092 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14851092 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20130601-2.1ubuntu2 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build clipper-2.1.20130601 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with autotools_dev --with autoreconf --dbg-package=libclipper2v5-dbg dh: The autotools-dev sequence is deprecated and replaced by dh in debhelper (>= 9.20160115) dh: This feature will be removed in compat 12. dh_auto_clean -O--dbg-package=libclipper2v5-dbg dh_autotools-dev_restoreconfig -O--dbg-package=libclipper2v5-dbg dh_autotools-dev_restoreconfig: dh_autotools-dev_restoreconfig is deprecated; please see dh_autotools-dev_restoreconfig(1) for a replacement dh_autotools-dev_restoreconfig: This feature will be removed in compat 12. for c_g in `find . -type f -name config.guess` ; do if test -e "$c_g.dh-orig" ; then mv -f "$c_g.dh-orig" "$c_g" ; fi ; done for c_s in `find . -type f -name config.sub` ; do if test -e "$c_s.dh-orig" ; then mv -f "$c_s.dh-orig" "$c_s" ; fi ; done find . -type f \( -name config.guess.dh-orig -o -name config.sub.dh-orig \) -delete debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/libclipper-dev.debhelper.log debian/libclipper-doc.debhelper.log debian/libclipper2v5-dbg.debhelper.log debian/libclipper2v5.debhelper.log rm -f -- debian/libclipper-dev.substvars debian/libclipper2v5.substvars debian/libclipper-doc.substvars debian/libclipper2v5-dbg.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2v5/ debian/libclipper-doc/ debian/libclipper2v5-dbg/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with autotools_dev --with autoreconf --dbg-package=libclipper2v5-dbg dh: The autotools-dev sequence is deprecated and replaced by dh in debhelper (>= 9.20160115) dh: This feature will be removed in compat 12. dh_update_autotools_config -a -O--dbg-package=libclipper2v5-dbg install -d debian/.debhelper/bucket/files cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/22250fdfd9eaa0c5b2a9097483aaccb70435b8f8028ccc3c38e41ed76e5e7a2c.tmp mv debian/.debhelper/bucket/files/22250fdfd9eaa0c5b2a9097483aaccb70435b8f8028ccc3c38e41ed76e5e7a2c.tmp debian/.debhelper/bucket/files/22250fdfd9eaa0c5b2a9097483aaccb70435b8f8028ccc3c38e41ed76e5e7a2c cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/1df181e8e701c16ff55f06ab1b3af5f2223005fa56f946c5eedebff92ed99605.tmp mv debian/.debhelper/bucket/files/1df181e8e701c16ff55f06ab1b3af5f2223005fa56f946c5eedebff92ed99605.tmp debian/.debhelper/bucket/files/1df181e8e701c16ff55f06ab1b3af5f2223005fa56f946c5eedebff92ed99605 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf -a -O--dbg-package=libclipper2v5-dbg find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:11: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_autotools-dev_updateconfig -a -O--dbg-package=libclipper2v5-dbg dh_autotools-dev_updateconfig: dh_autotools-dev_updateconfig is deprecated; please see dh_autotools-dev_updateconfig(1) for a replacement dh_autotools-dev_updateconfig: This feature will be removed in compat 12. for c_g in `find -type f -name config.guess` ; do if ! test -e "$c_g.dh-orig" ; then mv -f "$c_g" "$c_g.dh-orig" ; cp -f /usr/share/misc/config.guess "$c_g" ; fi ; done for c_s in `find -type f -name config.sub` ; do if ! test -e "$c_s.dh-orig" ; then mv -f "$c_s" "$c_s.dh-orig" ; cp -f /usr/share/misc/config.sub "$c_s" ; fi ; done debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb... yes checking mmdb/mmdb_manager.h usability... yes checking mmdb/mmdb_manager.h presence... yes checking for mmdb/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes mmdbold: no minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/<>' dh_auto_build -a -O--dbg-package=libclipper2v5-dbg make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in clipper make[3]: Entering directory '/<>/clipper' Making all in core make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from atomsf.h:50, from atomsf.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::Mat33sym<>; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from atomsf.h:50, from atomsf.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::AtomShapeFn::init(const clipper::Coord_orth&, const clipper::String&, const clipper::U_aniso_orth&, clipper::ftype)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from atomsf.h:50, from atomsf.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from atomsf.h:50, from atomsf.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, std::vector&) const’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::AtomShapeFn::rho_curv(const clipper::Coord_orth&, clipper::ftype&, std::vector&, clipper::Matrix&) const’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::AtomShapeFn::rho_grad(const clipper::Coord_orth&, clipper::ftype&, std::vector&) const’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from coords.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from coords.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector clipper::Matrix::eigen(bool) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::RTop_orth::RTop_orth(const std::vector&, const std::vector&)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::RTop_orth::RTop_orth(const std::vector&, const std::vector&, const std::vector&)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from ramachandran.h:49, from ramachandran.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from ramachandran.h:49, from ramachandran.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::Prob_phi_2d::init(const int&)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_fn.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from resol_fn.h:48, from resol_fn.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::ResolutionFn::ResolutionFn(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const clipper::HKL_info&, const clipper::BasisFn_base&, const clipper::TargetFn_base&, const std::vector&, clipper::ftype, bool)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from clipper_stats.h:49, from clipper_stats.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from clipper_stats.h:49, from clipper_stats.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::Generic_ordinal::init(const clipper::Range&, int)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::Generic_ordinal::init(int)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from symop.h:49, from spacegroup.h:50, from spacegroup.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::Vec3; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::Symop; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/algorithm:62:0, from spacegroup.cpp:47: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]’: /usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from spacegroup.cpp:47: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Distance = int; _Tp = clipper::Vec3; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from spacegroup.cpp:47: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from symop.h:49, from spacegroup.h:50, from spacegroup.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In function ‘clipper::Vec3 clipper::real_asu(const clipper::Spgr_descr::Symop_codes&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from spacegroup.cpp:47: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from symop.h:49, from spacegroup.h:50, from spacegroup.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::Spgr_cacheobj::Spgr_cacheobj(const Key&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from clipper_types.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from clipper_types.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::Matrix::Matrix(const int&, const int&, T) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector clipper::Matrix::eigen(bool) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 24]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 72]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 180]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::LogPhaseProb::LogPhaseProb(const clipper::HKL_class&) [with int N = 360]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from hkl_operators.h:48, from hkl_operators.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from fftmap.h:49, from xmap.h:49, from xmap.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from fftmap.h:49, from xmap.h:49, from xmap.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::Xmap::init(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::Xmap::Xmap(const clipper::Spacegroup&, const clipper::Cell&, const clipper::Grid_sampling&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from clipper_test.h:49, from test_core.h:49, from test_core.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/algorithm:62:0, from test_core.cpp:52: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from test_core.cpp:52: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from test_core.cpp:52: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from clipper_test.h:49, from test_core.h:49, from test_core.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::Test_core::operator()()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from test_core.cpp:52: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from clipper_test.h:49, from test_core.h:49, from test_core.cpp:43: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o In file included from /usr/include/c++/7/vector:69:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from test_data.h:49, from test_data.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from clipper_memory.h:50, from clipper_types.h:50, from cell.h:50, from coords.h:49, from hkl_lookup.h:49, from hkl_info.h:49, from hkl_data.h:49, from hkl_datatypes.h:49, from test_data.h:49, from test_data.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::data::Test_data::Test_data()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-core.la -rpath /usr/lib/arm-linux-gnueabihf libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[4]: Leaving directory '/<>/clipper/core' Making all in contrib make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o convolution_search.lo convolution_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from convolution_search.h:50, from convolution_search.cpp:42: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from convolution_search.h:50, from convolution_search.cpp:42: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::Convolution_search_slow::operator()(clipper::Xmap&, const clipper::NXmap&, const clipper::NX_operator&) const [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc.lo sfcalc.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o edcalc.lo edcalc.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc_obs.lo sfcalc_obs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc_obs.h:49, from sfcalc_obs.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc_obs.h:49, from sfcalc_obs.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = float]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc_obs.h:49, from sfcalc_obs.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfcalc_obs.h:49, from sfcalc_obs.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFcalc_obs_bulk::operator()(clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::Atom_list&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fffear.lo fffear.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from fffear.h:50, from fffear.cpp:42: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from fffear.h:50, from fffear.cpp:42: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::NXmap::NXmap(const clipper::Cell&, const clipper::Grid_sampling&, const clipper::Grid_range&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfscale.lo sfscale.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘std::vector clipper::Matrix::eigen(bool) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::BasisFn_base::Fderiv::Fderiv(const int&)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::Matrix::Matrix(const int&, const int&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_binner; T = float]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_linear; T = float]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFscale_aniso::scale(clipper::HKL_data&, clipper::ftype, int) [with D = clipper::datatypes::F_sigF; T1 = clipper::TargetFn_scaleF1F2, clipper::datatypes::F_sigF >; T2 = clipper::TargetFn_scaleLogF1F2, clipper::datatypes::F_sigF >; S = clipper::BasisFn_spline; T = float]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::I_sigI; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfscale.h:49, from sfscale.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::I_sigI]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o function_object_bases.lo function_object_bases.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfweight.lo sfweight.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::HLterms, std::allocator::HLterms> >::iterator {aka __gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::SFweight_spline::init(int, int, int) [with T = float]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::SFweight_spline::HLterms; _Alloc = std::allocator::HLterms>]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::HLterms, std::allocator::HLterms> >::iterator {aka __gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::SFweight_spline::init(int, int, int) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator::HLterms*, std::vector::HLterms, std::allocator::HLterms> > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::BasisFn_spline::BasisFn_spline(const clipper::HKL_data_base&, const int&, clipper::ftype)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::ABCD; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::ABCD]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = float]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = float]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::E_sigE; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::E_sigE]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::F_sigF; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_sigF]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetFo; T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::SFweight_spline::evaluate(clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data >&, const clipper::HKL_data&, F) [with F = clipper::SFweight_spline::TargetHL; T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::datatypes::F_phi; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from sfweight.h:49, from sfweight.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::HKL_data::update() [with T = clipper::datatypes::F_phi]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mapfilter.lo mapfilter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from mapfilter.h:50, from mapfilter.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/cell.h:50, from ../core/coords.h:49, from ../core/hkl_lookup.h:49, from ../core/hkl_info.h:49, from ../core/hkl_data.h:49, from ../core/hkl_datatypes.h:49, from function_object_bases.h:50, from mapfilter.h:50, from mapfilter.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::MapFilter_fft::operator()(clipper::NXmap&, const clipper::NXmap&) const [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::MapFilter_slow::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::MapFilter_fft::operator()(clipper::Xmap&, const clipper::Xmap&) const [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o skeleton.lo skeleton.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o originmatch.lo originmatch.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o test_contrib.lo test_contrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o In file included from /usr/include/c++/7/vector:69:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/clipper_test.h:49, from test_contrib.h:49, from test_contrib.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from ../core/clipper_memory.h:50, from ../core/clipper_types.h:50, from ../core/clipper_test.h:49, from test_contrib.h:49, from test_contrib.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool clipper::Test_contrib::operator()()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/<>/clipper/core/.libs ../core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o In file included from /usr/include/c++/7/vector:69:0, from mmdb/../core/clipper_memory.h:50, from mmdb/../core/clipper_types.h:50, from mmdb/../core/cell.h:50, from mmdb/../core/coords.h:49, from mmdb/clipper_mmdb.h:49, from mmdb/clipper_mmdb.cpp:42: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from mmdb/../core/clipper_memory.h:50, from mmdb/../core/clipper_types.h:50, from mmdb/../core/cell.h:50, from mmdb/../core/coords.h:49, from mmdb/clipper_mmdb.h:49, from mmdb/clipper_mmdb.cpp:42: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘clipper::MMDBAtom_list::MMDBAtom_list(clipper::mmdb::PPCAtom, int)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol.lo minimol/minimol.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o In file included from /usr/include/c++/7/vector:69:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘clipper::Atom_list clipper::MMonomer::atom_list() const’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘clipper::Atom_list clipper::MModel::atom_list() const’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘clipper::Atom_list clipper::MPolymer::atom_list() const’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::MMonomer::insert(const clipper::MAtom&, int)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/vector.tcc:145:19: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 _M_realloc_insert(__position, __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:153:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::MMonomer::protein_mainchain_build_carbonyl_oxygen(const clipper::MMonomer&)’: /usr/include/c++/7/bits/stl_vector.h:1183:35: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 { return _M_erase(__position); } ^ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::MMonomer::protein_mainchain_build_carbonyl_oxygen()’: /usr/include/c++/7/bits/stl_vector.h:1183:35: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 { return _M_erase(__position); } ^ /usr/include/c++/7/bits/stl_vector.h: In member function ‘clipper::ftype clipper::MMonomer::protein_sidechain_build_rotamer(const int&, clipper::MMonomer::TYPE)’: /usr/include/c++/7/bits/stl_vector.h:1183:35: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 { return _M_erase(__position); } ^ In file included from /usr/include/c++/7/vector:69:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = clipper::MAtom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from minimol/../core/clipper_memory.h:50, from minimol/../core/clipper_types.h:50, from minimol/../core/cell.h:50, from minimol/../core/coords.h:49, from minimol/minimol.h:49, from minimol/minimol.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘clipper::MMonomer& clipper::MMonomer::copy(const clipper::MMonomer&, const clipper::MM::COPY&)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/container_minimol.lo minimol/container_minimol.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_data.lo minimol/minimol_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_io.lo minimol/minimol_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o phs/phs_io.lo phs/phs_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o In file included from /usr/include/c++/7/vector:69:0, from cif/../core/clipper_memory.h:50, from cif/../core/clipper_types.h:50, from cif/../core/cell.h:50, from cif/../core/coords.h:49, from cif/../core/hkl_lookup.h:49, from cif/../core/hkl_info.h:49, from cif/../core/hkl_data.h:49, from cif/../core/hkl_datatypes.h:49, from cif/cif_data_io.h:48, from cif/cif_data_io.cpp:44: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from cif/../core/clipper_memory.h:50, from cif/../core/clipper_types.h:50, from cif/../core/cell.h:50, from cif/../core/coords.h:49, from cif/../core/hkl_lookup.h:49, from cif/../core/hkl_info.h:49, from cif/../core/hkl_data.h:49, from cif/../core/hkl_datatypes.h:49, from cif/cif_data_io.h:48, from cif/cif_data_io.cpp:44: /usr/include/c++/7/bits/stl_vector.h: In member function ‘int clipper::CIFfile::set_cell_symm_reso_by_kludge(std::__cxx11::string)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o In file included from /usr/include/c++/7/vector:69:0, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_io.h:49, from ccp4/ccp4_mtz_io.cpp:42: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::CCP4MTZfile::datasetinf; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 In file included from /usr/include/c++/7/vector:64:0, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_io.h:49, from ccp4/ccp4_mtz_io.cpp:42: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::CCP4MTZfile::export_dataset(const clipper::MTZdataset&, clipper::String)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_io.h:49, from ccp4/ccp4_mtz_io.cpp:42: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::CCP4MTZfile::crystalinf; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_hkl.h:49, from ccp4/ccp4_mtz_types.h:49, from ccp4/ccp4_mtz_io.h:49, from ccp4/ccp4_mtz_io.cpp:42: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::CCP4MTZfile::export_crystal(const clipper::MTZcrystal&, clipper::String)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In function ‘void clipper::read_hierarchy(CMtz::MTZ*, std::vector&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::CCP4MTZfile::open_write(clipper::String)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In function ‘void clipper::reference_cols(CMtz::MTZ*, std::vector, std::vector >, std::vector >&, std::vector >&)’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o In file included from /usr/include/c++/7/vector:69:0, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_map.h:49, from ccp4/ccp4_map_io.h:49, from ccp4/ccp4_map_io.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ccp4/../core/clipper_memory.h:50, from ccp4/../core/clipper_types.h:50, from ccp4/../core/cell.h:50, from ccp4/../core/coords.h:49, from ccp4/../core/container.h:49, from ccp4/../core/container_types.h:49, from ccp4/../core/container_map.h:49, from ccp4/ccp4_map_io.h:49, from ccp4/ccp4_map_io.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::CCP4MAPfile::import_nxmap(clipper::NXmap&) const [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘clipper::CCP4MAPfile::ASUerror clipper::CCP4MAPfile::import_xmap_check_asu(clipper::Xmap&, T) const [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::CCP4MAPfile::import_xmap(clipper::Xmap&) const [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from cns/../core/clipper_memory.h:50, from cns/../core/clipper_types.h:50, from cns/../core/cell.h:50, from cns/../core/coords.h:49, from cns/../core/container.h:49, from cns/../core/container_types.h:49, from cns/../core/container_map.h:49, from cns/cns_map_io.h:49, from cns/cns_map_io.cpp:43: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from cns/../core/clipper_memory.h:50, from cns/../core/clipper_types.h:50, from cns/../core/cell.h:50, from cns/../core/coords.h:49, from cns/../core/container.h:49, from cns/../core/container_types.h:49, from cns/../core/container_map.h:49, from cns/cns_map_io.h:49, from cns/cns_map_io.cpp:43: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’: /usr/include/c++/7/bits/stl_vector.h:732:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o In file included from /usr/include/c++/7/vector:69:0, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from fortran/f_interface.cpp:1: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, const _Tp&) [with _Tp = clipper::Atom; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:399:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from ../clipper/core/clipper_memory.h:50, from ../clipper/core/clipper_types.h:50, from ../clipper/core/cell.h:50, from ../clipper/core/coords.h:49, from ../clipper/core/container.h:49, from ../clipper/core/container_types.h:49, from ../clipper/core/container_hkl.h:49, from ../clipper/clipper.h:7, from fortran/f_interface.cpp:1: /usr/include/c++/7/bits/stl_vector.h: In function ‘void sfcalc_(const int*, const float*, const int*, const float*, const float*, const float*, const float*, const float*, const int*, const int*, const int*, const int*, const int*, float*, float*)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --with autotools_dev --with autoreconf --dbg-package=libclipper2v5-dbg dh: The autotools-dev sequence is deprecated and replaced by dh in debhelper (>= 9.20160115) dh: This feature will be removed in compat 12. dh_testroot -a -O--dbg-package=libclipper2v5-dbg dh_prep -a -O--dbg-package=libclipper2v5-dbg rm -f -- debian/libclipper-dev.substvars debian/libclipper2v5.substvars debian/libclipper2v5-dbg.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2v5/ debian/libclipper2v5/ debian/.debhelper/generated/libclipper2v5-dbg/ debian/libclipper2v5-dbg/ dh_auto_install -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev debian/libclipper2v5 debian/libclipper2v5-dbg make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in clipper make[2]: Entering directory '/<>/clipper' Making install in core make[3]: Entering directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/<>/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/<>/clipper/core' make[3]: Leaving directory '/<>/clipper/core' Making install in contrib make[3]: Entering directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /<>/clipper/contrib; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/arm-linux-gnueabihf convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/<>/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/<>/clipper/contrib' make[3]: Leaving directory '/<>/clipper/contrib' make[3]: Entering directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/arm-linux-gnueabihf mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/arm-linux-gnueabihf minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-mmdb -lmmdb -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/arm-linux-gnueabihf phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o phs/.libs/phs_io.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/arm-linux-gnueabihf cif/cif_data_io.lo core/libclipper-core.la -lmmdb -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o cif/.libs/cif_data_io.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lmmdb -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/arm-linux-gnueabihf ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lccp4c -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/arm-linux-gnueabihf cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/arm-linux-gnueabihf fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/7/crtbeginS.o fortran/.libs/f_interface.o -L/<>/debian/tmp/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lclipper-core -lclipper-contrib -L/usr/lib/gcc/arm-linux-gnueabihf/7 -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../../../lib -L/lib/arm-linux-gnueabihf -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/arm-linux-gnueabihf/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/7/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/7/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/<>/debian/tmp/usr/include/clipper/ccp4' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/<>/debian/tmp/usr/include/clipper/cif' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/<>/debian/tmp/usr/include/clipper/cns' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/<>/debian/tmp/usr/include/clipper/minimol' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/<>/debian/tmp/usr/include/clipper/mmdb' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/<>/debian/tmp/usr/include/clipper/phs' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h clipper-mmdbold.h minimal-clipper-map.h '/<>/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' make[2]: Leaving directory '/<>/clipper' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -d debian/libclipper-dev//usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig debian/libclipper-dev//usr/lib/arm-linux-gnueabihf/ install -d debian/.debhelper/generated/libclipper-dev install -d debian/libclipper2v5//usr/lib/arm-linux-gnueabihf cp --reflink=auto -a debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 debian/tmp/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2v5//usr/lib/arm-linux-gnueabihf/ install -d debian/.debhelper/generated/libclipper2v5 install -d debian/.debhelper/generated/libclipper-doc install -d debian/.debhelper/generated/libclipper2v5-dbg dh_installdocs -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -d debian/libclipper2v5/usr/share/doc/libclipper2v5 install -p -m0644 debian/copyright debian/libclipper2v5/usr/share/doc/libclipper2v5/copyright install -d debian/libclipper2v5-dbg/usr/share/doc/libclipper2v5-dbg install -p -m0644 debian/copyright debian/libclipper2v5-dbg/usr/share/doc/libclipper2v5-dbg/copyright dh_installchangelogs -a -O--dbg-package=libclipper2v5-dbg install -p -m0644 debian/changelog debian/libclipper2v5/usr/share/doc/libclipper2v5/changelog.Debian install -p -m0644 debian/changelog debian/libclipper2v5-dbg/usr/share/doc/libclipper2v5-dbg/changelog.Debian install -p -m0644 debian/changelog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian dh_installexamples -a -O--dbg-package=libclipper2v5-dbg dh_lintian -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper2v5/usr/share/lintian/overrides install -p -m0644 debian/libclipper2v5.lintian-overrides debian/libclipper2v5/usr/share/lintian/overrides/libclipper2v5 install -d debian/libclipper2v5-dbg/usr/share/lintian/overrides install -p -m0644 debian/libclipper2v5-dbg.lintian-overrides debian/libclipper2v5-dbg/usr/share/lintian/overrides/libclipper2v5-dbg dh_perl -a -O--dbg-package=libclipper2v5-dbg dh_link -a -O--dbg-package=libclipper2v5-dbg rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cns.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so rm -f debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/arm-linux-gnueabihf/libclipper-cif.so rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 rm -f debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 dh_strip_nondeterminism -a -O--dbg-package=libclipper2v5-dbg dh_compress -a -O--dbg-package=libclipper2v5-dbg cd debian/libclipper-dev cd debian/libclipper2v5 cd debian/libclipper2v5-dbg chmod a-x usr/share/doc/libclipper2v5/changelog.Debian chmod a-x usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper2v5-dbg/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper2v5/changelog.Debian gzip -9nf usr/share/doc/libclipper2v5-dbg/changelog.Debian cd '/<>' cd '/<>' cd '/<>' dh_fixperms -a -O--dbg-package=libclipper2v5-dbg find debian/libclipper-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2v5 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2v5-dbg -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2v5 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2v5-dbg ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2v5-dbg/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2v5-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2v5/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5-dbg/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2v5-dbg/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2v5/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5-dbg -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--dbg-package=libclipper2v5-dbg dh_strip -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/6e/b66b6fbb5e69f5e489d84bce43ae736e28a383.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/6e/b66b6fbb5e69f5e489d84bce43ae736e28a383.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/6e/b66b6fbb5e69f5e489d84bce43ae736e28a383.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/6e/b66b6fbb5e69f5e489d84bce43ae736e28a383.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a7/de57e340d546dc87a65de59ba02af507ca0cbb.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a7/de57e340d546dc87a65de59ba02af507ca0cbb.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a7/de57e340d546dc87a65de59ba02af507ca0cbb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a7/de57e340d546dc87a65de59ba02af507ca0cbb.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/39/754e0c88d722df416c1bbca48064a4f71b7380.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/39/754e0c88d722df416c1bbca48064a4f71b7380.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/39/754e0c88d722df416c1bbca48064a4f71b7380.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/39/754e0c88d722df416c1bbca48064a4f71b7380.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/86/96e64d56b5f52f25150ca238ab1e33ea9becf2.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/86/96e64d56b5f52f25150ca238ab1e33ea9becf2.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/86/96e64d56b5f52f25150ca238ab1e33ea9becf2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/86/96e64d56b5f52f25150ca238ab1e33ea9becf2.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a4/b6db6790d2a1ccefdfffd809fa685348354e74.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a4/b6db6790d2a1ccefdfffd809fa685348354e74.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a4/b6db6790d2a1ccefdfffd809fa685348354e74.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/a4/b6db6790d2a1ccefdfffd809fa685348354e74.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/9c/b62ee84a107b9b3aa52e201ad2a855d29a4642.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/9c/b62ee84a107b9b3aa52e201ad2a855d29a4642.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/9c/b62ee84a107b9b3aa52e201ad2a855d29a4642.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/9c/b62ee84a107b9b3aa52e201ad2a855d29a4642.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/44/d91d03c5a37b40d881ddc83ff57d8f1c775433.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/44/d91d03c5a37b40d881ddc83ff57d8f1c775433.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/44/d91d03c5a37b40d881ddc83ff57d8f1c775433.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/44/d91d03c5a37b40d881ddc83ff57d8f1c775433.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/3a/9a0780cfa4a57e0ebb81abd9babb74960f53ce.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/3a/9a0780cfa4a57e0ebb81abd9babb74960f53ce.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/3a/9a0780cfa4a57e0ebb81abd9babb74960f53ce.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/3a/9a0780cfa4a57e0ebb81abd9babb74960f53ce.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/92/bc3746e6d9d68c18840ac22590b6cdbdf7e1c1.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/92/bc3746e6d9d68c18840ac22590b6cdbdf7e1c1.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/92/bc3746e6d9d68c18840ac22590b6cdbdf7e1c1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/92/bc3746e6d9d68c18840ac22590b6cdbdf7e1c1.debug debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 install -d debian/.debhelper/libclipper2v5-dbg dh_makeshlibs -a -O--dbg-package=libclipper2v5-dbg rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2v5/DEBIAN/shlibs install -d debian/libclipper2v5/DEBIAN echo "libclipper-ccp4 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-core 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs chmod 0644 -- debian/libclipper2v5/DEBIAN/shlibs chown 0:0 -- debian/libclipper2v5/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2v5/triggers.new debian/.debhelper/generated/libclipper2v5/triggers rm -f debian/libclipper2v5-dbg/DEBIAN/shlibs dh_shlibdeps -a -O--dbg-package=libclipper2v5-dbg dpkg-shlibdeps -Tdebian/libclipper2v5.substvars debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libclipper2v5/usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 found in none of the libraries dh_installdeb -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2v5/triggers debian/libclipper2v5/DEBIAN/triggers install -d debian/libclipper2v5-dbg/DEBIAN dh_gencontrol -a -O--dbg-package=libclipper2v5-dbg echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -Pdebian/libclipper-dev echo misc:Depends= >> debian/libclipper2v5.substvars echo misc:Pre-Depends= >> debian/libclipper2v5.substvars dpkg-gencontrol -plibclipper2v5 -ldebian/changelog -Tdebian/libclipper2v5.substvars -Pdebian/libclipper2v5 echo misc:Depends= >> debian/libclipper2v5-dbg.substvars echo misc:Pre-Depends= >> debian/libclipper2v5-dbg.substvars dpkg-gencontrol -plibclipper2v5-dbg -ldebian/changelog -Tdebian/libclipper2v5-dbg.substvars -Pdebian/libclipper2v5-dbg "-DBuild-Ids=39754e0c88d722df416c1bbca48064a4f71b7380 3a9a0780cfa4a57e0ebb81abd9babb74960f53ce 44d91d03c5a37b40d881ddc83ff57d8f1c775433 6eb66b6fbb5e69f5e489d84bce43ae736e28a383 8696e64d56b5f52f25150ca238ab1e33ea9becf2 92bc3746e6d9d68c18840ac22590b6cdbdf7e1c1 9cb62ee84a107b9b3aa52e201ad2a855d29a4642 a4b6db6790d2a1ccefdfffd809fa685348354e74 a7de57e340d546dc87a65de59ba02af507ca0cbb" chmod 0644 -- debian/libclipper-dev/DEBIAN/control chown 0:0 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/libclipper2v5-dbg/DEBIAN/control chown 0:0 -- debian/libclipper2v5-dbg/DEBIAN/control chmod 0644 -- debian/libclipper2v5/DEBIAN/control chown 0:0 -- debian/libclipper2v5/DEBIAN/control dh_md5sums -a -O--dbg-package=libclipper2v5-dbg (cd debian/libclipper-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libclipper2v5 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libclipper2v5-dbg >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libclipper2v5/DEBIAN/md5sums chown 0:0 -- debian/libclipper2v5/DEBIAN/md5sums chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chown 0:0 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper2v5-dbg/DEBIAN/md5sums chown 0:0 -- debian/libclipper2v5-dbg/DEBIAN/md5sums dh_builddeb -a -O--dbg-package=libclipper2v5-dbg dpkg-deb --build debian/libclipper-dev .. dpkg-deb --build debian/libclipper2v5 .. dpkg-deb --build debian/libclipper2v5-dbg .. INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libclipper-dev (in debian/libclipper-dev); do_strip: , oemstrip: pkgstriptranslations: processing libclipper2v5-dbg (in debian/libclipper2v5-dbg); do_strip: , oemstrip: pkgstriptranslations: processing libclipper2v5 (in debian/libclipper2v5); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libclipper-dev/DEBIAN/control, package libclipper-dev, directory debian/libclipper-dev pkgstripfiles: processing control file: debian/libclipper2v5/DEBIAN/control, package libclipper2v5, directory debian/libclipper2v5 INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... Searching for duplicated docs in dependency libclipper2v5... symlinking changelog.Debian.gz in libclipper-dev to file in libclipper2v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20130601-2.1ubuntu2_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2v5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2v5' in '../libclipper2v5_2.1.20130601-2.1ubuntu2_armhf.deb'. pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libclipper2v5-dbg/DEBIAN/control, package libclipper2v5-dbg, directory debian/libclipper2v5-dbg Searching for duplicated docs in dependency libclipper2v5... symlinking changelog.Debian.gz in libclipper2v5-dbg to file in libclipper2v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2v5-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2v5-dbg' in '../libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clipper_2.1.20130601-2.1ubuntu2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clipper-2.1.20130601 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180507-2014 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clipper_2.1.20130601-2.1ubuntu2_armhf.changes: ---------------------------------------------- Format: 1.8 Date: Mon, 07 May 2018 19:48:08 +0000 Source: clipper Binary: libclipper-dev libclipper2v5 libclipper-doc libclipper2v5-dbg Architecture: armhf Version: 2.1.20130601-2.1ubuntu2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: libclipper-dev - object oriented development kit for crystallographic computing libclipper-doc - doxygen generated documentation for libclipper libclipper2v5 - object oriented library for crystallographic computing libclipper2v5-dbg - object oriented development kit for crystallographic computing Changes: clipper (2.1.20130601-2.1ubuntu2) cosmic; urgency=medium . * No-change rebuild for mmdb soname change. Checksums-Sha1: 0be9dfce3e94b3a6601dfbc9fa63897169f36fc6 6281 clipper_2.1.20130601-2.1ubuntu2_armhf.buildinfo 02f335f949c703c26533ad9ff943092b5b761250 74996 libclipper-dev_2.1.20130601-2.1ubuntu2_armhf.deb cdee5b5c5fe699ba36f76bc2f7351cdb26baa3e9 6536836 libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_armhf.deb b9ceb87df3b5b2723e43becf870aea274ae5f074 527408 libclipper2v5_2.1.20130601-2.1ubuntu2_armhf.deb Checksums-Sha256: 1cba82e085b4d7b09061ec420565cb782c3ab9974320473de8a0a15f4f6ff22d 6281 clipper_2.1.20130601-2.1ubuntu2_armhf.buildinfo fded0d1d4b698d9c203915b7558451908511d0c3619990279909ed44f3c2ecc4 74996 libclipper-dev_2.1.20130601-2.1ubuntu2_armhf.deb 5ad28df6fcfa57873f856d4a67ae6b5f517d45dd7bc3ecdc097ea86776a43536 6536836 libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_armhf.deb 1b3cab57c473c688b38aab51c191245b6d1b258f0bd5208eee687aa6ccdeba80 527408 libclipper2v5_2.1.20130601-2.1ubuntu2_armhf.deb Files: 8497462ef2fccc0f59b03fda94b3c2ed 6281 science optional clipper_2.1.20130601-2.1ubuntu2_armhf.buildinfo 34ab250d28a2bebb56426d27322d769a 74996 libdevel optional libclipper-dev_2.1.20130601-2.1ubuntu2_armhf.deb d192741626e46db2f80279e60c3eedc9 6536836 debug extra libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_armhf.deb cf849e9abf9ef3099c1b1f0fdb791556 527408 libs optional libclipper2v5_2.1.20130601-2.1ubuntu2_armhf.deb Original-Maintainer: Debian Science Maintainers +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libclipper-dev_2.1.20130601-2.1ubuntu2_armhf.deb ------------------------------------------------ new debian package, version 2.0. size 74996 bytes: control archive=2896 bytes. 887 bytes, 20 lines control 5992 bytes, 82 lines md5sums Package: libclipper-dev Source: clipper Version: 2.1.20130601-2.1ubuntu2 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 654 Depends: fftw-dev, libclipper2v5 (= 2.1.20130601-2.1ubuntu2), libccp4-dev, libmmdb-dev, sfftw-dev Suggests: libclipper-doc Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented development kit for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains development environment for programs which will use the clipper libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2018-05-07 19:48 ./ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/ccp4/ -rw-r--r-- root/root 4349 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_map_io.h -rw-r--r-- root/root 10870 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_mtz_io.h -rw-r--r-- root/root 4187 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_mtz_types.h -rw-r--r-- root/root 3056 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_utils.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/cif/ -rw-r--r-- root/root 5200 2018-05-07 19:48 ./usr/include/clipper/cif/cif_data_io.h -rw-r--r-- root/root 228 2018-05-07 19:48 ./usr/include/clipper/clipper-ccp4.h -rw-r--r-- root/root 158 2018-05-07 19:48 ./usr/include/clipper/clipper-cctbx.h -rw-r--r-- root/root 150 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drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/core/ -rw-r--r-- root/root 6505 2018-05-07 19:48 ./usr/include/clipper/core/atomsf.h -rw-r--r-- root/root 7219 2018-05-07 19:48 ./usr/include/clipper/core/cell.h -rw-r--r-- root/root 3257 2018-05-07 19:48 ./usr/include/clipper/core/clipper_instance.h -rw-r--r-- root/root 8170 2018-05-07 19:48 ./usr/include/clipper/core/clipper_memory.h -rw-r--r-- root/root 6252 2018-05-07 19:48 ./usr/include/clipper/core/clipper_message.h -rw-r--r-- root/root 2712 2018-05-07 19:48 ./usr/include/clipper/core/clipper_precision.h -rw-r--r-- root/root 8636 2018-05-07 19:48 ./usr/include/clipper/core/clipper_stats.h -rw-r--r-- root/root 5507 2018-05-07 19:48 ./usr/include/clipper/core/clipper_sysdep.h -rw-r--r-- root/root 2937 2018-05-07 19:48 ./usr/include/clipper/core/clipper_test.h -rw-r--r-- root/root 4993 2018-05-07 19:48 ./usr/include/clipper/core/clipper_thread.h -rw-r--r-- root/root 28411 2018-05-07 19:48 ./usr/include/clipper/core/clipper_types.h -rw-r--r-- root/root 9274 2018-05-07 19:48 ./usr/include/clipper/core/clipper_util.h -rw-r--r-- root/root 5640 2018-05-07 19:48 ./usr/include/clipper/core/container.h -rw-r--r-- root/root 6761 2018-05-07 19:48 ./usr/include/clipper/core/container_hkl.h -rw-r--r-- root/root 8922 2018-05-07 19:48 ./usr/include/clipper/core/container_map.h -rw-r--r-- root/root 5747 2018-05-07 19:48 ./usr/include/clipper/core/container_types.h -rw-r--r-- root/root 39266 2018-05-07 19:48 ./usr/include/clipper/core/coords.h -rw-r--r-- root/root 9812 2018-05-07 19:48 ./usr/include/clipper/core/derivs.h -rw-r--r-- root/root 10977 2018-05-07 19:48 ./usr/include/clipper/core/fftmap.h -rw-r--r-- root/root 6392 2018-05-07 19:48 ./usr/include/clipper/core/fftmap_sparse.h -rw-r--r-- root/root 11925 2018-05-07 19:48 ./usr/include/clipper/core/hkl_compute.h -rw-r--r-- root/root 22701 2018-05-07 19:48 ./usr/include/clipper/core/hkl_data.h -rw-r--r-- root/root 24887 2018-05-07 19:48 ./usr/include/clipper/core/hkl_datatypes.h -rw-r--r-- root/root 11570 2018-05-07 19:48 ./usr/include/clipper/core/hkl_info.h -rw-r--r-- root/root 3214 2018-05-07 19:48 ./usr/include/clipper/core/hkl_lookup.h -rw-r--r-- root/root 6048 2018-05-07 19:48 ./usr/include/clipper/core/hkl_operators.h -rw-r--r-- root/root 17423 2018-05-07 19:48 ./usr/include/clipper/core/map_interp.h -rw-r--r-- root/root 5297 2018-05-07 19:48 ./usr/include/clipper/core/map_utils.h -rw-r--r-- root/root 19689 2018-05-07 19:48 ./usr/include/clipper/core/nxmap.h -rw-r--r-- root/root 9411 2018-05-07 19:48 ./usr/include/clipper/core/nxmap_operator.h -rw-r--r-- root/root 4983 2018-05-07 19:48 ./usr/include/clipper/core/ramachandran.h -rw-r--r-- root/root 14748 2018-05-07 19:48 ./usr/include/clipper/core/resol_basisfn.h -rw-r--r-- root/root 10863 2018-05-07 19:48 ./usr/include/clipper/core/resol_fn.h -rw-r--r-- root/root 20587 2018-05-07 19:48 ./usr/include/clipper/core/resol_targetfn.h -rw-r--r-- root/root 8437 2018-05-07 19:48 ./usr/include/clipper/core/rotation.h -rw-r--r-- root/root 10516 2018-05-07 19:48 ./usr/include/clipper/core/spacegroup.h -rw-r--r-- root/root 2961 2018-05-07 19:48 ./usr/include/clipper/core/spacegroup_data.h -rw-r--r-- root/root 5869 2018-05-07 19:48 ./usr/include/clipper/core/symop.h -rw-r--r-- root/root 2503 2018-05-07 19:48 ./usr/include/clipper/core/test_core.h -rw-r--r-- root/root 3086 2018-05-07 19:48 ./usr/include/clipper/core/test_data.h -rw-r--r-- root/root 31817 2018-05-07 19:48 ./usr/include/clipper/core/xmap.h -rw-r--r-- root/root 311 2018-05-07 19:48 ./usr/include/clipper/minimal-clipper-hkl.h -rw-r--r-- root/root 265 2018-05-07 19:48 ./usr/include/clipper/minimal-clipper-map.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/minimol/ -rw-r--r-- root/root 2903 2018-05-07 19:48 ./usr/include/clipper/minimol/container_minimol.h -rw-r--r-- root/root 15387 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol.h -rw-r--r-- root/root 2816 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_data.h -rw-r--r-- root/root 3534 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_io.h -rw-r--r-- root/root 4833 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_seq.h -rw-r--r-- root/root 4760 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_utils.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/mmdb/ -rw-r--r-- root/root 10195 2018-05-07 19:48 ./usr/include/clipper/mmdb/clipper_mmdb.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/phs/ -rw-r--r-- root/root 4073 2018-05-07 19:48 ./usr/include/clipper/phs/phs_io.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so -> libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-cif.so -> libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-cns.so -> libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-contrib.so -> libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-core.so -> libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-fortran.so -> libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-minimol.so -> libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so -> libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-phs.so -> libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 475 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/pkgconfig/clipper.pc drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper-dev/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper-dev/changelog.Debian.gz -> ../libclipper2v5/changelog.Debian.gz -rw-r--r-- root/root 2500 2013-09-06 18:59 ./usr/share/doc/libclipper-dev/copyright libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_armhf.deb --------------------------------------------------- new debian package, version 2.0. size 6536836 bytes: control archive=1288 bytes. 1215 bytes, 21 lines control 1110 bytes, 11 lines md5sums Package: libclipper2v5-dbg Source: clipper Version: 2.1.20130601-2.1ubuntu2 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 6939 Depends: libclipper2v5 (= 2.1.20130601-2.1ubuntu2) Conflicts: libclipper2-dbg Replaces: libclipper2-dbg Section: debug Priority: extra Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented development kit for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains debugging symbols for the clipper libraries. Build-Ids: 39754e0c88d722df416c1bbca48064a4f71b7380 3a9a0780cfa4a57e0ebb81abd9babb74960f53ce 44d91d03c5a37b40d881ddc83ff57d8f1c775433 6eb66b6fbb5e69f5e489d84bce43ae736e28a383 8696e64d56b5f52f25150ca238ab1e33ea9becf2 92bc3746e6d9d68c18840ac22590b6cdbdf7e1c1 9cb62ee84a107b9b3aa52e201ad2a855d29a4642 a4b6db6790d2a1ccefdfffd809fa685348354e74 a7de57e340d546dc87a65de59ba02af507ca0cbb Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2018-05-07 19:48 ./ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/39/ -rw-r--r-- root/root 414620 2018-05-07 19:48 ./usr/lib/debug/.build-id/39/754e0c88d722df416c1bbca48064a4f71b7380.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/3a/ -rw-r--r-- root/root 90820 2018-05-07 19:48 ./usr/lib/debug/.build-id/3a/9a0780cfa4a57e0ebb81abd9babb74960f53ce.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 1849716 2018-05-07 19:48 ./usr/lib/debug/.build-id/44/d91d03c5a37b40d881ddc83ff57d8f1c775433.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/6e/ -rw-r--r-- root/root 2958696 2018-05-07 19:48 ./usr/lib/debug/.build-id/6e/b66b6fbb5e69f5e489d84bce43ae736e28a383.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/86/ -rw-r--r-- root/root 113320 2018-05-07 19:48 ./usr/lib/debug/.build-id/86/96e64d56b5f52f25150ca238ab1e33ea9becf2.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/92/ -rw-r--r-- root/root 97596 2018-05-07 19:48 ./usr/lib/debug/.build-id/92/bc3746e6d9d68c18840ac22590b6cdbdf7e1c1.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/9c/ -rw-r--r-- root/root 752824 2018-05-07 19:48 ./usr/lib/debug/.build-id/9c/b62ee84a107b9b3aa52e201ad2a855d29a4642.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/a4/ -rw-r--r-- root/root 659592 2018-05-07 19:48 ./usr/lib/debug/.build-id/a4/b6db6790d2a1ccefdfffd809fa685348354e74.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/a7/ -rw-r--r-- root/root 137620 2018-05-07 19:48 ./usr/lib/debug/.build-id/a7/de57e340d546dc87a65de59ba02af507ca0cbb.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper2v5-dbg/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper2v5-dbg/changelog.Debian.gz -> ../libclipper2v5/changelog.Debian.gz -rw-r--r-- root/root 2500 2013-09-06 18:59 ./usr/share/doc/libclipper2v5-dbg/copyright drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2015-08-03 21:07 ./usr/share/lintian/overrides/libclipper2v5-dbg libclipper2v5_2.1.20130601-2.1ubuntu2_armhf.deb ----------------------------------------------- new debian package, version 2.0. size 527408 bytes: control archive=1284 bytes. 910 bytes, 21 lines control 1019 bytes, 12 lines md5sums 294 bytes, 9 lines shlibs 74 bytes, 2 lines triggers Package: libclipper2v5 Source: clipper Version: 2.1.20130601-2.1ubuntu2 Architecture: armhf Maintainer: Ubuntu Developers Installed-Size: 1674 Depends: libc6 (>= 2.4), libccp4c0, libgcc1 (>= 1:4.0), libmmdb0, libstdc++6 (>= 5.2), sfftw2 Conflicts: libclipper2 Replaces: libclipper2 Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented library for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains shared libraries needed to run programs that have been developed using the clipper libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2018-05-07 19:48 ./ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2 -> libclipper-ccp4.so.2.0.1 -rw-r--r-- root/root 157904 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2 -> libclipper-cif.so.2.0.1 -rw-r--r-- root/root 30536 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2 -> libclipper-cns.so.2.0.1 -rw-r--r-- root/root 96980 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2 -> libclipper-contrib.so.2.0.1 -rw-r--r-- root/root 406632 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-core.so.2 -> libclipper-core.so.2.0.1 -rw-r--r-- root/root 748880 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2 -> libclipper-fortran.so.2.0.1 -rw-r--r-- root/root 18076 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2 -> libclipper-minimol.so.2.0.1 -rw-r--r-- root/root 184188 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2 -> libclipper-mmdb.so.2.0.1 -rw-r--r-- root/root 22212 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2 -> libclipper-phs.so.2.0.1 -rw-r--r-- root/root 18016 2018-05-07 19:48 ./usr/lib/arm-linux-gnueabihf/libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper2v5/ -rw-r--r-- root/root 584 2018-05-07 19:48 ./usr/share/doc/libclipper2v5/changelog.Debian.gz -rw-r--r-- root/root 2500 2013-09-06 18:59 ./usr/share/doc/libclipper2v5/copyright drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 132 2015-08-03 21:07 ./usr/share/lintian/overrides/libclipper2v5 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 122160 Build-Time: 379 Distribution: cosmic-proposed Host Architecture: armhf Install-Time: 21 Job: clipper_2.1.20130601-2.1ubuntu2.dsc Machine Architecture: arm64 Package: clipper Package-Time: 402 Source-Version: 2.1.20130601-2.1ubuntu2 Space: 122160 Status: successful Version: 2.1.20130601-2.1ubuntu2 -------------------------------------------------------------------------------- Finished at 20180507-2014 Build needed 00:06:42, 122160k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14851092 Scanning for processes to kill in build PACKAGEBUILD-14851092 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14851092 Stopping target for build PACKAGEBUILD-14851092 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14851092 Removing build PACKAGEBUILD-14851092