https://launchpad.net/ubuntu/+source/clipper/2.1.20130601-2.1ubuntu2/+build/14851093 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-024 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:04 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 May 19:57:18 ntpdate[1810]: adjust time server 10.211.37.1 offset 0.007850 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14851093 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-14851093 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14851093 Starting target for build PACKAGEBUILD-14851093 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14851093 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14851093 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14851093 Updating target for build PACKAGEBUILD-14851093 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1005 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8577 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4974 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [48.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [28.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [213 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [173 kB] Fetched 16.0 MB in 6s (2714 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 libmount1 libmpx2 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libquadmath0 libreadline7 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libusb-0.1-4 libuuid1 mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tzdata util-linux 69 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 46.0 MB of archives. After this operation, 1363 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-2ubuntu2 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 bsdutils i386 1:2.31.1-0.4ubuntu4 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.1-2 [185 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.1-2 [428 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-2ubuntu2 [166 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libperl5.26 i386 5.26.2-3 [3182 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl i386 5.26.2-3 [201 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-base i386 5.26.2-3 [1495 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-2ubuntu2 [141 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuuid1 i386 2.31.1-0.4ubuntu4 [20.6 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libblkid1 i386 2.31.1-0.4ubuntu4 [139 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libfdisk1 i386 2.31.1-0.4ubuntu4 [182 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmount1 i386 2.31.1-0.4ubuntu4 [149 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsmartcols1 i386 2.31.1-0.4ubuntu4 [91.8 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 fdisk i386 2.31.1-0.4ubuntu4 [116 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 util-linux i386 2.31.1-0.4ubuntu4 [929 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 mount i386 2.31.1-0.4ubuntu4 [112 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 libquadmath0 i386 8.1.0-1ubuntu3 [208 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 libitm1 i386 8.1.0-1ubuntu3 [30.8 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8-base i386 8.1.0-1ubuntu3 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++6 i386 8.1.0-1ubuntu3 [430 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpx2 i386 8.1.0-1ubuntu3 [12.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 libcc1-0 i386 8.1.0-1ubuntu3 [41.8 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 libatomic1 i386 8.1.0-1ubuntu3 [9624 B] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libgomp1 i386 8.1.0-1ubuntu3 [80.8 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc1 i386 1:8.1.0-1ubuntu3 [48.1 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.1-2 [9684 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.31-1 [60.9 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.1-2 [11.6 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-2ubuntu2 [101 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-2ubuntu2 [128 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-2ubuntu2 [79.7 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.10-2 [179 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps6 i386 2:3.3.12-3ubuntu2 [32.3 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-2ubuntu2 [108 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.12-3ubuntu2 [224 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-0 i386 0~20161029-2 [25.0 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 readline-common all 7.0-5 [52.2 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libreadline7 i386 7.0-5 [127 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.23.1-1 [536 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.30-17ubuntu1 [193 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.30-17ubuntu1 [3392 B] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.30-17ubuntu1 [2028 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.30-17ubuntu1 [544 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan4 i386 7.3.0-18ubuntu2 [361 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan0 i386 7.3.0-18ubuntu2 [141 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libcilkrts5 i386 7.3.0-18ubuntu2 [47.3 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 g++-7 i386 7.3.0-18ubuntu2 [7813 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7 i386 7.3.0-18ubuntu2 [7694 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-7-dev i386 7.3.0-18ubuntu2 [1505 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-7-dev i386 7.3.0-18ubuntu2 [2398 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-7 i386 7.3.0-18ubuntu2 [6967 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7-base i386 7.3.0-18ubuntu2 [19.0 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:7.3.0-3ubuntu3 [27.6 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:7.3.0-3ubuntu3 [5268 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:7.3.0-3ubuntu3 [1596 B] Get:66 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.1-2 [2704 B] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.1-2 [2692 B] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 pinentry-curses i386 1.1.0-1build1 [37.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.0 MB in 2s (24.2 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_i386.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_i386.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_i386.deb ... Unpacking libext2fs2:i386 (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:i386 (1.44.1-2) ... (Reading database ... 12641 files and directories currently installed.) 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Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14851093 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-14851093 --arch=i386 --dist=cosmic-proposed --nolog clipper_2.1.20130601-2.1ubuntu2.dsc Initiating build PACKAGEBUILD-14851093 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:04 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-024.buildd +==============================================================================+ | clipper 2.1.20130601-2.1ubuntu2 (i386) 07 May 2018 19:58 | +==============================================================================+ Package: clipper Version: 2.1.20130601-2.1ubuntu2 Source Version: 2.1.20130601-2.1ubuntu2 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/clipper-N2sx7L/clipper-2.1.20130601' with '<>' I: NOTICE: Log filtering will replace 'build/clipper-N2sx7L' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14851093/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clipper_2.1.20130601-2.1ubuntu2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-YvD_YB/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-YvD_YB/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YvD_YB/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YvD_YB/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YvD_YB/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-YvD_YB/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (30.9 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-YvD_YB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), autotools-dev, dh-autoreconf, fftw-dev, gfortran, libccp4-dev, libmmdb-dev, sfftw-dev Filtered Build-Depends: debhelper (>= 9), autotools-dev, dh-autoreconf, fftw-dev, gfortran, libccp4-dev, libmmdb-dev, sfftw-dev dpkg-deb: building package 'sbuild-build-depends-clipper-dummy' in '/<>/resolver-Y44ROK/apt_archive/sbuild-build-depends-clipper-dummy.deb'. Ign:1 copy:/<>/resolver-Y44ROK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Y44ROK/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Y44ROK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Y44ROK/apt_archive ./ Sources [254 B] Get:5 copy:/<>/resolver-Y44ROK/apt_archive ./ Packages [569 B] Fetched 2942 B in 0s (38.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clipper build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcroco3 libfabric1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libltdl7 libmagic-mgc libmagic1 libmmdb-dev libmmdb0 libmmdb2-0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 librdmacm1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sfftw-dev sfftw2 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz mpi-defaults-bin gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff libhwloc-contrib-plugins pciutils libtool-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers openmpi-bin libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcroco3 libfabric1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libltdl7 libmagic-mgc libmagic1 libmmdb-dev libmmdb0 libmmdb2-0 libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi2 libpciaccess0 libpipeline1 libpsm-infinipath1 librdmacm1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sbuild-build-depends-clipper-dummy sfftw-dev sfftw2 0 upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 30.4 MB of archives. After this operation, 112 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Y44ROK/apt_archive ./ sbuild-build-depends-clipper-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.8.7-1 [44.7 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 libmmdb0 i386 1.25.5-2 [356 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmagic-mgc i386 1:5.33-2 [193 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmagic1 i386 1:5.33-2 [76.6 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 file i386 1:5.33-2 [22.8 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-3ubuntu3 [8193 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2 i386 2.9.4+dfsg1-6.1ubuntu1 [697 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-6build1 [51.3 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma1 i386 2.0.11-2.2 [23.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libtool all 2.4.6-2.1 [195 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 17 [15.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.041-1 [5188 B] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.2.1ubuntu1 [906 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-3-200 i386 3.2.29-0ubuntu3 [55.9 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-route-3-200 i386 3.2.29-0ubuntu3 [154 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libibverbs1 i386 18.0-1 [51.8 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpsm-infinipath1 i386 3.3+20.604758e7-5 [182 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 librdmacm1 i386 18.0-1 [69.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfabric1 i386 1.5.3-1 [336 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libltdl7 i386 2.4.6-2.1 [40.5 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc5 i386 1.11.10-1 [115 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 ocl-icd-libopencl1 i386 2.2.11-1ubuntu1 [31.3 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-plugins i386 1.11.10-1 [13.2 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/universe i386 libopenmpi2 i386 2.1.1-8 [2129 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/universe i386 fftw2 i386 2.1.5-4.2 [143 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/universe i386 fftw-dev i386 2.1.5-4.2 [165 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libgfortran4 i386 7.3.0-18ubuntu2 [472 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libgfortran-7-dev i386 7.3.0-18ubuntu2 [527 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 gfortran-7 i386 7.3.0-18ubuntu2 [7375 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 gfortran i386 4:7.3.0-3ubuntu3 [1356 B] Get:51 http://ftpmaster.internal/ubuntu cosmic/universe i386 libmmdb-dev i386 1.25.5-2 [96.3 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libmmdb2-0 i386 2.0.5-1 [351 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/universe i386 sfftw2 i386 2.1.5-4.2 [139 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/universe i386 sfftw-dev i386 2.1.5-4.2 [162 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libccp4-data all 6.5.1-1 [61.3 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libccp4c0 i386 6.5.1-1 [93.9 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libccp4f0 i386 6.5.1-1 [230 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libccp4-dev i386 6.5.1-1 [41.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.4 MB in 3s (11.9 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_i386.deb ... Unpacking libbsd0:i386 (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_i386.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmmdb0:i386. Preparing to unpack .../05-libmmdb0_1.25.5-2_i386.deb ... Unpacking libmmdb0:i386 (1.25.5-2) ... Selecting previously unselected package libmagic-mgc. 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Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.8.7-1) ... Setting up libccp4-data (6.5.1-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:i386 (1:5.33-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:i386 (2.4.6-2.1) ... Setting up libgfortran-7-dev:i386 (7.3.0-18ubuntu2) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up gfortran-7 (7.3.0-18ubuntu2) ... Setting up libmmdb2-0:i386 (2.0.5-1) ... Setting up ocl-icd-libopencl1:i386 (2.2.11-1ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libmmdb0:i386 (1.25.5-2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up gfortran (4:7.3.0-3ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libccp4c0:i386 (6.5.1-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libmmdb-dev (1.25.5-2) ... Setting up libccp4f0:i386 (6.5.1-1) ... Setting up libnl-route-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:i386 (1.11.10-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libccp4-dev:i386 (6.5.1-1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:i386 (18.0-1) ... Setting up po-debconf (1.0.20) ... Setting up librdmacm1:i386 (18.0-1) ... Setting up libfabric1 (1.5.3-1) ... Setting up libopenmpi2:i386 (2.1.1-8) ... Setting up sfftw2 (2.1.5-4.2) ... Setting up sfftw-dev (2.1.5-4.2) ... Setting up fftw2 (2.1.5-4.2) ... Setting up fftw-dev (2.1.5-4.2) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-clipper-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic amd64 (i686) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-18ubuntu2 gcc-7_7.3.0-18ubuntu2 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-18ubuntu2 libstdc++6_8.1.0-1ubuntu3 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-i686-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-18ubuntu2 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 fftw-dev_2.1.5-4.2 fftw2_2.1.5-4.2 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-18ubuntu2 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-18ubuntu2 gcc-7-base_7.3.0-18ubuntu2 gcc-8-base_8.1.0-1ubuntu3 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gfortran_4:7.3.0-3ubuntu3 gfortran-7_7.3.0-18ubuntu2 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-18ubuntu2 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu3 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu3 libccp4-data_6.5.1-1 libccp4-dev_6.5.1-1 libccp4c0_6.5.1-1 libccp4f0_6.5.1-1 libcilkrts5_7.3.0-18ubuntu2 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libext2fs2_1.44.1-2 libfabric1_1.5.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-18ubuntu2 libgcc1_1:8.1.0-1ubuntu3 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-18ubuntu2 libgfortran4_7.3.0-18ubuntu2 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu3 libgpg-error0_1.31-1 libhogweed4_3.4-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs1_18.0-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-1ubuntu3 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl7_2.4.6-2.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmmdb-dev_1.25.5-2 libmmdb0_1.25.5-2 libmmdb2-0_2.0.5-1 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-1ubuntu3 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libnuma1_2.0.11-2.2 libopenmpi2_2.1.1-8 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsm-infinipath1_3.3+20.604758e7-5 libquadmath0_8.1.0-1ubuntu3 librdmacm1_18.0-1 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-18ubuntu2 libstdc++6_8.1.0-1ubuntu3 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-18ubuntu2 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-clipper-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sfftw-dev_2.1.5-4.2 sfftw2_2.1.5-4.2 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon May 7 19:48:32 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clipper_2.1.20130601-2.1ubuntu2.dsc dpkg-source: info: extracting clipper in clipper-2.1.20130601 dpkg-source: info: unpacking clipper_2.1.20130601.orig.tar.bz2 dpkg-source: info: unpacking clipper_2.1.20130601-2.1ubuntu2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14851093 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14851093 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14851093 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20130601-2.1ubuntu2 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build clipper-2.1.20130601 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with autotools_dev --with autoreconf --dbg-package=libclipper2v5-dbg dh: The autotools-dev sequence is deprecated and replaced by dh in debhelper (>= 9.20160115) dh: This feature will be removed in compat 12. dh_auto_clean -O--dbg-package=libclipper2v5-dbg dh_autotools-dev_restoreconfig -O--dbg-package=libclipper2v5-dbg dh_autotools-dev_restoreconfig: dh_autotools-dev_restoreconfig is deprecated; please see dh_autotools-dev_restoreconfig(1) for a replacement dh_autotools-dev_restoreconfig: This feature will be removed in compat 12. for c_g in `find . -type f -name config.guess` ; do if test -e "$c_g.dh-orig" ; then mv -f "$c_g.dh-orig" "$c_g" ; fi ; done for c_s in `find . -type f -name config.sub` ; do if test -e "$c_s.dh-orig" ; then mv -f "$c_s.dh-orig" "$c_s" ; fi ; done find . -type f \( -name config.guess.dh-orig -o -name config.sub.dh-orig \) -delete debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f debian/libclipper-dev.debhelper.log debian/libclipper-doc.debhelper.log debian/libclipper2v5-dbg.debhelper.log debian/libclipper2v5.debhelper.log rm -f -- debian/libclipper-dev.substvars debian/libclipper2v5.substvars debian/libclipper-doc.substvars debian/libclipper2v5-dbg.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2v5/ debian/libclipper-doc/ debian/libclipper2v5-dbg/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with autotools_dev --with autoreconf --dbg-package=libclipper2v5-dbg dh: The autotools-dev sequence is deprecated and replaced by dh in debhelper (>= 9.20160115) dh: This feature will be removed in compat 12. dh_update_autotools_config -a -O--dbg-package=libclipper2v5-dbg install -d debian/.debhelper/bucket/files cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/22250fdfd9eaa0c5b2a9097483aaccb70435b8f8028ccc3c38e41ed76e5e7a2c.tmp mv debian/.debhelper/bucket/files/22250fdfd9eaa0c5b2a9097483aaccb70435b8f8028ccc3c38e41ed76e5e7a2c.tmp debian/.debhelper/bucket/files/22250fdfd9eaa0c5b2a9097483aaccb70435b8f8028ccc3c38e41ed76e5e7a2c cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/1df181e8e701c16ff55f06ab1b3af5f2223005fa56f946c5eedebff92ed99605.tmp mv debian/.debhelper/bucket/files/1df181e8e701c16ff55f06ab1b3af5f2223005fa56f946c5eedebff92ed99605.tmp debian/.debhelper/bucket/files/1df181e8e701c16ff55f06ab1b3af5f2223005fa56f946c5eedebff92ed99605 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf -a -O--dbg-package=libclipper2v5-dbg find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:11: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_autotools-dev_updateconfig -a -O--dbg-package=libclipper2v5-dbg dh_autotools-dev_updateconfig: dh_autotools-dev_updateconfig is deprecated; please see dh_autotools-dev_updateconfig(1) for a replacement dh_autotools-dev_updateconfig: This feature will be removed in compat 12. for c_g in `find -type f -name config.guess` ; do if ! test -e "$c_g.dh-orig" ; then mv -f "$c_g" "$c_g.dh-orig" ; cp -f /usr/share/misc/config.guess "$c_g" ; fi ; done for c_s in `find -type f -name config.sub` ; do if ! test -e "$c_s.dh-orig" ; then mv -f "$c_s" "$c_s.dh-orig" ; cp -f /usr/share/misc/config.sub "$c_s" ; fi ; done debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb... yes checking mmdb/mmdb_manager.h usability... yes checking mmdb/mmdb_manager.h presence... yes checking for mmdb/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes mmdbold: no minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/<>' dh_auto_build -a -O--dbg-package=libclipper2v5-dbg make -j1 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in clipper make[3]: Entering directory '/<>/clipper' Making all in core make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c 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-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/i386-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb 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-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/i386-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/i386-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/i386-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --with autotools_dev --with autoreconf --dbg-package=libclipper2v5-dbg dh: The autotools-dev sequence is deprecated and replaced by dh in debhelper (>= 9.20160115) dh: This feature will be removed in compat 12. dh_testroot -a -O--dbg-package=libclipper2v5-dbg dh_prep -a -O--dbg-package=libclipper2v5-dbg rm -f -- debian/libclipper-dev.substvars debian/libclipper2v5.substvars debian/libclipper2v5-dbg.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2v5/ debian/libclipper2v5/ debian/.debhelper/generated/libclipper2v5-dbg/ debian/libclipper2v5-dbg/ dh_auto_install -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev debian/libclipper2v5 debian/libclipper2v5-dbg make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in clipper make[2]: Entering directory '/<>/clipper' Making install in core make[3]: Entering directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-core.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/<>/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/<>/clipper/core' make[3]: Leaving directory '/<>/clipper/core' Making install in contrib make[3]: Entering directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /<>/clipper/contrib; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/i386-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-contrib.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/<>/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/<>/clipper/contrib' make[3]: Leaving directory '/<>/clipper/contrib' make[3]: Entering directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/<>/debian/tmp/usr/lib/i386-linux-gnu' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/i386-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -lmmdb -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/i386-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -lclipper-mmdb -lmmdb -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-minimol.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/i386-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o phs/.libs/phs_io.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-phs.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/i386-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o cif/.libs/cif_data_io.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -lmmdb -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-cif.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/i386-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -lccp4c -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/i386-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-cns.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/i386-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/7/crtbeginS.o fortran/.libs/f_interface.o -L/<>/debian/tmp/usr/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -lclipper-core -lclipper-contrib -L/usr/lib/gcc/i686-linux-gnu/7 -L/usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/7/crtendS.o /usr/lib/gcc/i686-linux-gnu/7/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-fortran.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /<>/debian/tmp/usr/lib/i386-linux-gnu/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/<>/debian/tmp/usr/include/clipper/ccp4' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/<>/debian/tmp/usr/include/clipper/cif' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/<>/debian/tmp/usr/include/clipper/cns' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/<>/debian/tmp/usr/include/clipper/minimol' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/<>/debian/tmp/usr/include/clipper/mmdb' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/<>/debian/tmp/usr/include/clipper/phs' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h clipper-mmdbold.h minimal-clipper-map.h '/<>/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' make[2]: Leaving directory '/<>/clipper' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -d debian/libclipper-dev//usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libclipper-ccp4.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-cif.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-cns.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-contrib.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-core.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-fortran.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-minimol.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-mmdb.so debian/tmp/usr/lib/i386-linux-gnu/libclipper-phs.so debian/tmp/usr/lib/i386-linux-gnu/pkgconfig debian/libclipper-dev//usr/lib/i386-linux-gnu/ install -d debian/.debhelper/generated/libclipper-dev install -d debian/libclipper2v5//usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-cif.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-cns.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-contrib.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-core.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-core.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-fortran.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-minimol.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/i386-linux-gnu/libclipper-phs.so.2 debian/tmp/usr/lib/i386-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2v5//usr/lib/i386-linux-gnu/ install -d debian/.debhelper/generated/libclipper2v5 install -d debian/.debhelper/generated/libclipper-doc install -d debian/.debhelper/generated/libclipper2v5-dbg dh_installdocs -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -d debian/libclipper2v5/usr/share/doc/libclipper2v5 install -p -m0644 debian/copyright debian/libclipper2v5/usr/share/doc/libclipper2v5/copyright install -d debian/libclipper2v5-dbg/usr/share/doc/libclipper2v5-dbg install -p -m0644 debian/copyright debian/libclipper2v5-dbg/usr/share/doc/libclipper2v5-dbg/copyright dh_installchangelogs -a -O--dbg-package=libclipper2v5-dbg install -p -m0644 debian/changelog debian/libclipper2v5/usr/share/doc/libclipper2v5/changelog.Debian install -p -m0644 debian/changelog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian install -p -m0644 debian/changelog debian/libclipper2v5-dbg/usr/share/doc/libclipper2v5-dbg/changelog.Debian dh_installexamples -a -O--dbg-package=libclipper2v5-dbg dh_lintian -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper2v5/usr/share/lintian/overrides install -p -m0644 debian/libclipper2v5.lintian-overrides debian/libclipper2v5/usr/share/lintian/overrides/libclipper2v5 install -d debian/libclipper2v5-dbg/usr/share/lintian/overrides install -p -m0644 debian/libclipper2v5-dbg.lintian-overrides debian/libclipper2v5-dbg/usr/share/lintian/overrides/libclipper2v5-dbg dh_perl -a -O--dbg-package=libclipper2v5-dbg dh_link -a -O--dbg-package=libclipper2v5-dbg rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-cns.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-mmdb.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/i386-linux-gnu/libclipper-contrib.so rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-minimol.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cif.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cns.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-contrib.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-phs.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-core.so.2 rm -f debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-fortran.so.2 dh_strip_nondeterminism -a -O--dbg-package=libclipper2v5-dbg dh_compress -a -O--dbg-package=libclipper2v5-dbg cd debian/libclipper2v5-dbg cd debian/libclipper2v5 cd debian/libclipper-dev chmod a-x usr/share/doc/libclipper2v5-dbg/changelog.Debian chmod a-x usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper2v5/changelog.Debian gzip -9nf usr/share/doc/libclipper2v5-dbg/changelog.Debian cd '/<>' gzip -9nf usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper2v5/changelog.Debian cd '/<>' cd '/<>' dh_fixperms -a -O--dbg-package=libclipper2v5-dbg find debian/libclipper2v5 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2v5-dbg -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2v5-dbg ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2v5 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2v5-dbg/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2v5-dbg/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5-dbg/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2v5/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2v5/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5-dbg/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2v5-dbg -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2v5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper2v5/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--dbg-package=libclipper2v5-dbg dh_strip -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/72/e6b1cfe17b7bc5818bead991277ae787425f16.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/72/e6b1cfe17b7bc5818bead991277ae787425f16.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/72/e6b1cfe17b7bc5818bead991277ae787425f16.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/72/e6b1cfe17b7bc5818bead991277ae787425f16.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-core.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ff/dfb2be55bad1d7ff6a8203a42ccd5243c30d2d.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ff/dfb2be55bad1d7ff6a8203a42ccd5243c30d2d.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ff/dfb2be55bad1d7ff6a8203a42ccd5243c30d2d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ff/dfb2be55bad1d7ff6a8203a42ccd5243c30d2d.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-contrib.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/e6/99c0172be002c2e05eccbfa0f8894e189ef445.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/e6/99c0172be002c2e05eccbfa0f8894e189ef445.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/e6/99c0172be002c2e05eccbfa0f8894e189ef445.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/e6/99c0172be002c2e05eccbfa0f8894e189ef445.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cif.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/7e/96520923b74ab9055b54b437f24639face03d1.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/7e/96520923b74ab9055b54b437f24639face03d1.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/7e/96520923b74ab9055b54b437f24639face03d1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/7e/96520923b74ab9055b54b437f24639face03d1.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-minimol.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/2200c556ba2084626a3ae467cb279aca371aeb.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/2200c556ba2084626a3ae467cb279aca371aeb.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/2200c556ba2084626a3ae467cb279aca371aeb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/2200c556ba2084626a3ae467cb279aca371aeb.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/04 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/04/b90bee5f46abce67692f50b9e6e127b97e7a60.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/04/b90bee5f46abce67692f50b9e6e127b97e7a60.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/04/b90bee5f46abce67692f50b9e6e127b97e7a60.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/04/b90bee5f46abce67692f50b9e6e127b97e7a60.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-phs.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ba/6384a885f86827d21ee4479f070a2ba7735f58.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ba/6384a885f86827d21ee4479f070a2ba7735f58.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ba/6384a885f86827d21ee4479f070a2ba7735f58.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/ba/6384a885f86827d21ee4479f070a2ba7735f58.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cns.so.2.0.1 install -d debian/libclipper2v5-dbg/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/74/54c4ade15970fde2bfaca8e92fbfa420c89b68.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/74/54c4ade15970fde2bfaca8e92fbfa420c89b68.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/74/54c4ade15970fde2bfaca8e92fbfa420c89b68.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/74/54c4ade15970fde2bfaca8e92fbfa420c89b68.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-fortran.so.2.0.1 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2.0.1 debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/cfdfdfd3258c64bbf61adf2e013412436134a6.debug chmod 0644 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/cfdfdfd3258c64bbf61adf2e013412436134a6.debug chown 0:0 -- debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/cfdfdfd3258c64bbf61adf2e013412436134a6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/libclipper2v5-dbg/usr/lib/debug/.build-id/62/cfdfdfd3258c64bbf61adf2e013412436134a6.debug debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2.0.1 install -d debian/.debhelper/libclipper2v5-dbg dh_makeshlibs -a -O--dbg-package=libclipper2v5-dbg rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2v5/DEBIAN/shlibs install -d debian/libclipper2v5/DEBIAN echo "libclipper-ccp4 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-core 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2v5" >> debian/libclipper2v5/DEBIAN/shlibs chmod 0644 -- debian/libclipper2v5/DEBIAN/shlibs chown 0:0 -- debian/libclipper2v5/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2v5/triggers.new debian/.debhelper/generated/libclipper2v5/triggers rm -f debian/libclipper2v5-dbg/DEBIAN/shlibs dh_shlibdeps -a -O--dbg-package=libclipper2v5-dbg dpkg-shlibdeps -Tdebian/libclipper2v5.substvars debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2v5/usr/lib/i386-linux-gnu/libclipper-mmdb.so.2.0.1 dh_installdeb -a -O--dbg-package=libclipper2v5-dbg install -d debian/libclipper-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2v5/triggers debian/libclipper2v5/DEBIAN/triggers install -d debian/libclipper2v5-dbg/DEBIAN dh_gencontrol -a -O--dbg-package=libclipper2v5-dbg echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -Pdebian/libclipper-dev echo misc:Depends= >> debian/libclipper2v5.substvars echo misc:Pre-Depends= >> debian/libclipper2v5.substvars dpkg-gencontrol -plibclipper2v5 -ldebian/changelog -Tdebian/libclipper2v5.substvars -Pdebian/libclipper2v5 echo misc:Depends= >> debian/libclipper2v5-dbg.substvars echo misc:Pre-Depends= >> debian/libclipper2v5-dbg.substvars dpkg-gencontrol -plibclipper2v5-dbg -ldebian/changelog -Tdebian/libclipper2v5-dbg.substvars -Pdebian/libclipper2v5-dbg "-DBuild-Ids=04b90bee5f46abce67692f50b9e6e127b97e7a60 622200c556ba2084626a3ae467cb279aca371aeb 62cfdfdfd3258c64bbf61adf2e013412436134a6 72e6b1cfe17b7bc5818bead991277ae787425f16 7454c4ade15970fde2bfaca8e92fbfa420c89b68 7e96520923b74ab9055b54b437f24639face03d1 ba6384a885f86827d21ee4479f070a2ba7735f58 e699c0172be002c2e05eccbfa0f8894e189ef445 ffdfb2be55bad1d7ff6a8203a42ccd5243c30d2d" chmod 0644 -- debian/libclipper2v5/DEBIAN/control chown 0:0 -- debian/libclipper2v5/DEBIAN/control chmod 0644 -- debian/libclipper2v5-dbg/DEBIAN/control chown 0:0 -- debian/libclipper2v5-dbg/DEBIAN/control chmod 0644 -- debian/libclipper-dev/DEBIAN/control chown 0:0 -- debian/libclipper-dev/DEBIAN/control dh_md5sums -a -O--dbg-package=libclipper2v5-dbg (cd debian/libclipper-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libclipper2v5-dbg >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libclipper2v5 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libclipper2v5/DEBIAN/md5sums chown 0:0 -- debian/libclipper2v5/DEBIAN/md5sums chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chown 0:0 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper2v5-dbg/DEBIAN/md5sums chown 0:0 -- debian/libclipper2v5-dbg/DEBIAN/md5sums dh_builddeb -a -O--dbg-package=libclipper2v5-dbg dpkg-deb --build debian/libclipper2v5-dbg .. dpkg-deb --build debian/libclipper2v5 .. dpkg-deb --build debian/libclipper-dev .. INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libclipper2v5-dbg (in debian/libclipper2v5-dbg); do_strip: , oemstrip: pkgstriptranslations: processing libclipper2v5 (in debian/libclipper2v5); do_strip: , oemstrip: pkgstriptranslations: processing libclipper-dev (in debian/libclipper-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libclipper2v5/DEBIAN/control, package libclipper2v5, directory debian/libclipper2v5 INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... pkgstripfiles: processing control file: debian/libclipper2v5-dbg/DEBIAN/control, package libclipper2v5-dbg, directory debian/libclipper2v5-dbg INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... INFO: pkgstripfiles: waiting for lock (libclipper2v5) ... pkgstripfiles: processing control file: debian/libclipper-dev/DEBIAN/control, package libclipper-dev, directory debian/libclipper-dev Searching for duplicated docs in dependency libclipper2v5... symlinking changelog.Debian.gz in libclipper-dev to file in libclipper2v5 INFO: pkgstripfiles: waiting for lock (libclipper2v5-dbg) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20130601-2.1ubuntu2_i386.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2v5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2v5' in '../libclipper2v5_2.1.20130601-2.1ubuntu2_i386.deb'. Searching for duplicated docs in dependency libclipper2v5... symlinking changelog.Debian.gz in libclipper2v5-dbg to file in libclipper2v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2v5-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2v5-dbg' in '../libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clipper_2.1.20130601-2.1ubuntu2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clipper-2.1.20130601 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180507-2005 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clipper_2.1.20130601-2.1ubuntu2_i386.changes: --------------------------------------------- Format: 1.8 Date: Mon, 07 May 2018 19:48:08 +0000 Source: clipper Binary: libclipper-dev libclipper2v5 libclipper-doc libclipper2v5-dbg Architecture: i386 Version: 2.1.20130601-2.1ubuntu2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: libclipper-dev - object oriented development kit for crystallographic computing libclipper-doc - doxygen generated documentation for libclipper libclipper2v5 - object oriented library for crystallographic computing libclipper2v5-dbg - object oriented development kit for crystallographic computing Changes: clipper (2.1.20130601-2.1ubuntu2) cosmic; urgency=medium . * No-change rebuild for mmdb soname change. Checksums-Sha1: e4e865eb44a5fd40f2395c37d7a514c5696a21ec 6471 clipper_2.1.20130601-2.1ubuntu2_i386.buildinfo 2c1c7b4066c972de3d1d66515b0ba4e1331c5b14 74988 libclipper-dev_2.1.20130601-2.1ubuntu2_i386.deb 481314c89b0dae52f25852d775c204b598e3df69 6442480 libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_i386.deb 679c6588ad3b35da3f40a629b654aa9a6803677f 616644 libclipper2v5_2.1.20130601-2.1ubuntu2_i386.deb Checksums-Sha256: 6080ea290f2c1fb269e18e23845f2541a80e3493313b67015627bebb63445c20 6471 clipper_2.1.20130601-2.1ubuntu2_i386.buildinfo 9f09cffd88efc9c7163f0b033ce47531d682b2ffa860e92097310655fd8fd43b 74988 libclipper-dev_2.1.20130601-2.1ubuntu2_i386.deb 00fee10f12af016a6159e79e5202f858f8578025dd563b6f78cdb1d230ac55b5 6442480 libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_i386.deb 385ab26c7d566944950f798cebe2973cd37bbe578bb543e2831d4281a313aeba 616644 libclipper2v5_2.1.20130601-2.1ubuntu2_i386.deb Files: cb8f7c0bf2ecfdc0cc135dcd816e4f80 6471 science optional clipper_2.1.20130601-2.1ubuntu2_i386.buildinfo a15d124abcbbfc87505f025d712e0767 74988 libdevel optional libclipper-dev_2.1.20130601-2.1ubuntu2_i386.deb cb80fc033fccad641968e1876015bb0d 6442480 debug extra libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_i386.deb 685b4dc55b45011e9c23cc08f39a56a9 616644 libs optional libclipper2v5_2.1.20130601-2.1ubuntu2_i386.deb Original-Maintainer: Debian Science Maintainers +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libclipper-dev_2.1.20130601-2.1ubuntu2_i386.deb ----------------------------------------------- new debian package, version 2.0. size 74988 bytes: control archive=2892 bytes. 886 bytes, 20 lines control 5987 bytes, 82 lines md5sums Package: libclipper-dev Source: clipper Version: 2.1.20130601-2.1ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 654 Depends: fftw-dev, libclipper2v5 (= 2.1.20130601-2.1ubuntu2), libccp4-dev, libmmdb-dev, sfftw-dev Suggests: libclipper-doc Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented development kit for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains development environment for programs which will use the clipper libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2018-05-07 19:48 ./ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/ccp4/ -rw-r--r-- root/root 4349 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_map_io.h -rw-r--r-- root/root 10870 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_mtz_io.h -rw-r--r-- root/root 4187 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_mtz_types.h -rw-r--r-- root/root 3056 2018-05-07 19:48 ./usr/include/clipper/ccp4/ccp4_utils.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/cif/ -rw-r--r-- root/root 5200 2018-05-07 19:48 ./usr/include/clipper/cif/cif_data_io.h -rw-r--r-- root/root 228 2018-05-07 19:48 ./usr/include/clipper/clipper-ccp4.h -rw-r--r-- root/root 158 2018-05-07 19:48 ./usr/include/clipper/clipper-cctbx.h -rw-r--r-- root/root 150 2018-05-07 19:48 ./usr/include/clipper/clipper-cif.h -rw-r--r-- root/root 185 2018-05-07 19:48 ./usr/include/clipper/clipper-cns.h -rw-r--r-- root/root 510 2018-05-07 19:48 ./usr/include/clipper/clipper-contrib.h -rw-r--r-- root/root 251 2018-05-07 19:48 ./usr/include/clipper/clipper-minimol.h -rw-r--r-- root/root 154 2018-05-07 19:48 ./usr/include/clipper/clipper-mmdb.h -rw-r--r-- root/root 165 2018-05-07 19:48 ./usr/include/clipper/clipper-mmdbold.h -rw-r--r-- root/root 145 2018-05-07 19:48 ./usr/include/clipper/clipper-phs.h -rw-r--r-- root/root 542 2018-05-07 19:48 ./usr/include/clipper/clipper.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/cns/ -rw-r--r-- root/root 5204 2018-05-07 19:48 ./usr/include/clipper/cns/cns_hkl_io.h -rw-r--r-- root/root 4411 2018-05-07 19:48 ./usr/include/clipper/cns/cns_map_io.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/contrib/ -rw-r--r-- root/root 4355 2018-05-07 19:48 ./usr/include/clipper/contrib/convolution_search.h -rw-r--r-- root/root 3709 2018-05-07 19:48 ./usr/include/clipper/contrib/edcalc.h -rw-r--r-- root/root 6632 2018-05-07 19:48 ./usr/include/clipper/contrib/fffear.h -rw-r--r-- root/root 12132 2018-05-07 19:48 ./usr/include/clipper/contrib/function_object_bases.h -rw-r--r-- root/root 6810 2018-05-07 19:48 ./usr/include/clipper/contrib/mapfilter.h -rw-r--r-- root/root 3261 2018-05-07 19:48 ./usr/include/clipper/contrib/originmatch.h -rw-r--r-- root/root 5217 2018-05-07 19:48 ./usr/include/clipper/contrib/sfcalc.h -rw-r--r-- root/root 3430 2018-05-07 19:48 ./usr/include/clipper/contrib/sfcalc_obs.h -rw-r--r-- root/root 4381 2018-05-07 19:48 ./usr/include/clipper/contrib/sfscale.h -rw-r--r-- root/root 6816 2018-05-07 19:48 ./usr/include/clipper/contrib/sfweight.h -rw-r--r-- root/root 4986 2018-05-07 19:48 ./usr/include/clipper/contrib/skeleton.h -rw-r--r-- root/root 2526 2018-05-07 19:48 ./usr/include/clipper/contrib/test_contrib.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/core/ -rw-r--r-- root/root 6505 2018-05-07 19:48 ./usr/include/clipper/core/atomsf.h -rw-r--r-- root/root 7219 2018-05-07 19:48 ./usr/include/clipper/core/cell.h -rw-r--r-- root/root 3257 2018-05-07 19:48 ./usr/include/clipper/core/clipper_instance.h -rw-r--r-- root/root 8170 2018-05-07 19:48 ./usr/include/clipper/core/clipper_memory.h -rw-r--r-- root/root 6252 2018-05-07 19:48 ./usr/include/clipper/core/clipper_message.h -rw-r--r-- root/root 2712 2018-05-07 19:48 ./usr/include/clipper/core/clipper_precision.h -rw-r--r-- root/root 8636 2018-05-07 19:48 ./usr/include/clipper/core/clipper_stats.h -rw-r--r-- root/root 5507 2018-05-07 19:48 ./usr/include/clipper/core/clipper_sysdep.h -rw-r--r-- root/root 2937 2018-05-07 19:48 ./usr/include/clipper/core/clipper_test.h -rw-r--r-- root/root 4993 2018-05-07 19:48 ./usr/include/clipper/core/clipper_thread.h -rw-r--r-- root/root 28411 2018-05-07 19:48 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19:48 ./usr/include/clipper/core/hkl_datatypes.h -rw-r--r-- root/root 11570 2018-05-07 19:48 ./usr/include/clipper/core/hkl_info.h -rw-r--r-- root/root 3214 2018-05-07 19:48 ./usr/include/clipper/core/hkl_lookup.h -rw-r--r-- root/root 6048 2018-05-07 19:48 ./usr/include/clipper/core/hkl_operators.h -rw-r--r-- root/root 17423 2018-05-07 19:48 ./usr/include/clipper/core/map_interp.h -rw-r--r-- root/root 5297 2018-05-07 19:48 ./usr/include/clipper/core/map_utils.h -rw-r--r-- root/root 19689 2018-05-07 19:48 ./usr/include/clipper/core/nxmap.h -rw-r--r-- root/root 9411 2018-05-07 19:48 ./usr/include/clipper/core/nxmap_operator.h -rw-r--r-- root/root 4983 2018-05-07 19:48 ./usr/include/clipper/core/ramachandran.h -rw-r--r-- root/root 14748 2018-05-07 19:48 ./usr/include/clipper/core/resol_basisfn.h -rw-r--r-- root/root 10863 2018-05-07 19:48 ./usr/include/clipper/core/resol_fn.h -rw-r--r-- root/root 20587 2018-05-07 19:48 ./usr/include/clipper/core/resol_targetfn.h -rw-r--r-- root/root 8437 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2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_data.h -rw-r--r-- root/root 3534 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_io.h -rw-r--r-- root/root 4833 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_seq.h -rw-r--r-- root/root 4760 2018-05-07 19:48 ./usr/include/clipper/minimol/minimol_utils.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/mmdb/ -rw-r--r-- root/root 10195 2018-05-07 19:48 ./usr/include/clipper/mmdb/clipper_mmdb.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/include/clipper/phs/ -rw-r--r-- root/root 4073 2018-05-07 19:48 ./usr/include/clipper/phs/phs_io.h drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-ccp4.so -> libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-cif.so -> libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-cns.so -> libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-contrib.so -> libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-core.so -> libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-fortran.so -> libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-minimol.so -> libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-mmdb.so -> libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-phs.so -> libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/pkgconfig/ -rw-r--r-- root/root 470 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/pkgconfig/clipper.pc drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper-dev/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper-dev/changelog.Debian.gz -> ../libclipper2v5/changelog.Debian.gz -rw-r--r-- root/root 2500 2013-09-06 18:59 ./usr/share/doc/libclipper-dev/copyright libclipper2v5-dbg_2.1.20130601-2.1ubuntu2_i386.deb -------------------------------------------------- new debian package, version 2.0. size 6442480 bytes: control archive=1292 bytes. 1214 bytes, 21 lines control 1110 bytes, 11 lines md5sums Package: libclipper2v5-dbg Source: clipper Version: 2.1.20130601-2.1ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 6717 Depends: libclipper2v5 (= 2.1.20130601-2.1ubuntu2) Conflicts: libclipper2-dbg Replaces: libclipper2-dbg Section: debug Priority: extra Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented development kit for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains debugging symbols for the clipper libraries. Build-Ids: 04b90bee5f46abce67692f50b9e6e127b97e7a60 622200c556ba2084626a3ae467cb279aca371aeb 62cfdfdfd3258c64bbf61adf2e013412436134a6 72e6b1cfe17b7bc5818bead991277ae787425f16 7454c4ade15970fde2bfaca8e92fbfa420c89b68 7e96520923b74ab9055b54b437f24639face03d1 ba6384a885f86827d21ee4479f070a2ba7735f58 e699c0172be002c2e05eccbfa0f8894e189ef445 ffdfb2be55bad1d7ff6a8203a42ccd5243c30d2d Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2018-05-07 19:48 ./ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/04/ -rw-r--r-- root/root 96240 2018-05-07 19:48 ./usr/lib/debug/.build-id/04/b90bee5f46abce67692f50b9e6e127b97e7a60.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/62/ -rw-r--r-- root/root 742988 2018-05-07 19:48 ./usr/lib/debug/.build-id/62/2200c556ba2084626a3ae467cb279aca371aeb.debug -rw-r--r-- root/root 87940 2018-05-07 19:48 ./usr/lib/debug/.build-id/62/cfdfdfd3258c64bbf61adf2e013412436134a6.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/72/ -rw-r--r-- root/root 2843696 2018-05-07 19:48 ./usr/lib/debug/.build-id/72/e6b1cfe17b7bc5818bead991277ae787425f16.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/74/ -rw-r--r-- root/root 110368 2018-05-07 19:48 ./usr/lib/debug/.build-id/74/54c4ade15970fde2bfaca8e92fbfa420c89b68.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/7e/ -rw-r--r-- root/root 661892 2018-05-07 19:48 ./usr/lib/debug/.build-id/7e/96520923b74ab9055b54b437f24639face03d1.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/ba/ -rw-r--r-- root/root 399852 2018-05-07 19:48 ./usr/lib/debug/.build-id/ba/6384a885f86827d21ee4479f070a2ba7735f58.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/e6/ -rw-r--r-- root/root 136376 2018-05-07 19:48 ./usr/lib/debug/.build-id/e6/99c0172be002c2e05eccbfa0f8894e189ef445.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/debug/.build-id/ff/ -rw-r--r-- root/root 1770104 2018-05-07 19:48 ./usr/lib/debug/.build-id/ff/dfb2be55bad1d7ff6a8203a42ccd5243c30d2d.debug drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper2v5-dbg/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper2v5-dbg/changelog.Debian.gz -> ../libclipper2v5/changelog.Debian.gz -rw-r--r-- root/root 2500 2013-09-06 18:59 ./usr/share/doc/libclipper2v5-dbg/copyright drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2015-08-03 21:07 ./usr/share/lintian/overrides/libclipper2v5-dbg libclipper2v5_2.1.20130601-2.1ubuntu2_i386.deb ---------------------------------------------- new debian package, version 2.0. size 616644 bytes: control archive=1288 bytes. 909 bytes, 21 lines control 974 bytes, 12 lines md5sums 294 bytes, 9 lines shlibs 74 bytes, 2 lines triggers Package: libclipper2v5 Source: clipper Version: 2.1.20130601-2.1ubuntu2 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 2468 Depends: libc6 (>= 2.4), libccp4c0, libgcc1 (>= 1:4.0), libmmdb0, libstdc++6 (>= 5.2), sfftw2 Conflicts: libclipper2 Replaces: libclipper2 Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented library for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains shared libraries needed to run programs that have been developed using the clipper libraries. Original-Maintainer: Debian Science Maintainers drwxr-xr-x root/root 0 2018-05-07 19:48 ./ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/ lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-ccp4.so.2 -> libclipper-ccp4.so.2.0.1 -rw-r--r-- root/root 268308 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-cif.so.2 -> libclipper-cif.so.2.0.1 -rw-r--r-- root/root 42724 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-cns.so.2 -> libclipper-cns.so.2.0.1 -rw-r--r-- root/root 154260 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-contrib.so.2 -> libclipper-contrib.so.2.0.1 -rw-r--r-- root/root 627440 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-core.so.2 -> libclipper-core.so.2.0.1 -rw-r--r-- root/root 1080104 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-fortran.so.2 -> libclipper-fortran.so.2.0.1 -rw-r--r-- root/root 26196 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-minimol.so.2 -> libclipper-minimol.so.2.0.1 -rw-r--r-- root/root 249612 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-mmdb.so.2 -> libclipper-mmdb.so.2.0.1 -rw-r--r-- root/root 26228 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-phs.so.2 -> libclipper-phs.so.2.0.1 -rw-r--r-- root/root 22052 2018-05-07 19:48 ./usr/lib/i386-linux-gnu/libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/doc/libclipper2v5/ -rw-r--r-- root/root 584 2018-05-07 19:48 ./usr/share/doc/libclipper2v5/changelog.Debian.gz -rw-r--r-- root/root 2500 2013-09-06 18:59 ./usr/share/doc/libclipper2v5/copyright drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-05-07 19:48 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 132 2015-08-03 21:07 ./usr/share/lintian/overrides/libclipper2v5 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 122392 Build-Time: 373 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 44 Job: clipper_2.1.20130601-2.1ubuntu2.dsc Machine Architecture: amd64 Package: clipper Package-Time: 422 Source-Version: 2.1.20130601-2.1ubuntu2 Space: 122392 Status: successful Version: 2.1.20130601-2.1ubuntu2 -------------------------------------------------------------------------------- Finished at 20180507-2005 Build needed 00:07:02, 122392k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14851093 Scanning for processes to kill in build PACKAGEBUILD-14851093 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14851093 Stopping target for build PACKAGEBUILD-14851093 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14851093 Removing build PACKAGEBUILD-14851093