https://launchpad.net/ubuntu/+source/clipper/2.1.20160809-1/+build/14865423 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-018 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:04:12 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 10 May 03:22:15 ntpdate[1873]: adjust time server 10.211.37.1 offset -0.000122 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-14865423 /home/buildd/filecache-default/ba8da4cd8f224e5b98b45e770e42ce881cefd998 Creating target for build PACKAGEBUILD-14865423 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-14865423 Starting target for build PACKAGEBUILD-14865423 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-14865423 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14865423 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-14865423 Updating target for build PACKAGEBUILD-14865423 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 Packages [974 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe arm64 Packages [8365 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4977 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 Packages [52.5 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [32.7 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 Packages [194 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [113 kB] Fetched 15.7 MB in 6s (2503 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 liblsan0 libmount1 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libreadline7 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libtsan0 libubsan0 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tzdata util-linux 72 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 41.5 MB of archives. After this operation, 1283 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-files arm64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo6 arm64 6.1+20180210-2ubuntu2 [74.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 bash arm64 4.4.18-2ubuntu2 [545 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 bsdutils arm64 1:2.31.1-0.4ubuntu4 [54.4 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 dpkg arm64 1.19.0.5ubuntu3 [1096 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 libext2fs2 arm64 1.44.1-2 [138 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fsprogs arm64 1.44.1-2 [346 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-bin arm64 6.1+20180210-2ubuntu2 [154 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libperl5.26 arm64 5.26.2-3 [3318 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl arm64 5.26.2-3 [201 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl-base arm64 5.26.2-3 [1237 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw6 arm64 6.1+20180210-2ubuntu2 [107 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libuuid1 arm64 2.31.1-0.4ubuntu4 [18.4 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libblkid1 arm64 2.31.1-0.4ubuntu4 [105 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libfdisk1 arm64 2.31.1-0.4ubuntu4 [138 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libmount1 arm64 2.31.1-0.4ubuntu4 [115 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsmartcols1 arm64 2.31.1-0.4ubuntu4 [70.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 fdisk arm64 2.31.1-0.4ubuntu4 [95.2 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 util-linux arm64 2.31.1-0.4ubuntu4 [818 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-passwd arm64 3.5.45 [45.8 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgomp1 arm64 8.1.0-1ubuntu3 [69.6 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 libitm1 arm64 8.1.0-1ubuntu3 [24.4 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-8-base arm64 8.1.0-1ubuntu3 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc1 arm64 1:8.1.0-1ubuntu3 [34.3 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblsan0 arm64 8.1.0-1ubuntu3 [120 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtsan0 arm64 8.1.0-1ubuntu3 [269 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcc1-0 arm64 8.1.0-1ubuntu3 [36.4 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 libatomic1 arm64 8.1.0-1ubuntu3 [9152 B] Get:31 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++6 arm64 8.1.0-1ubuntu3 [372 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapt-pkg5.0 arm64 1.7.0~alpha0ubuntu1 [760 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 apt arm64 1.7.0~alpha0ubuntu1 [1132 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 mount arm64 2.31.1-0.4ubuntu4 [97.8 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcap-ng0 arm64 0.7.9-1 [10.3 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcom-err2 arm64 1.44.1-2 [8852 B] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgpg-error0 arm64 1.31-1 [48.7 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main arm64 libss2 arm64 1.44.1-2 [9984 B] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses5 arm64 6.1+20180210-2ubuntu2 [77.0 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw5 arm64 6.1+20180210-2ubuntu2 [96.4 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo5 arm64 6.1+20180210-2ubuntu2 [70.4 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgmp10 arm64 2:6.1.2+dfsg-3 [204 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 libp11-kit0 arm64 0.23.10-2 [138 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 libprocps6 arm64 2:3.3.12-3ubuntu2 [28.2 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses6 arm64 6.1+20180210-2ubuntu2 [80.7 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 procps arm64 2:3.3.12-3ubuntu2 [206 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 libargon2-0 arm64 0~20161029-2 [17.9 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 readline-common all 7.0-5 [52.2 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libreadline7 arm64 7.0-5 [106 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libslang2 arm64 2.3.2-1ubuntu1 [372 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsqlite3-0 arm64 3.23.1-1 [430 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main arm64 tzdata all 2018e-1 [188 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-common arm64 2.30-17ubuntu1 [193 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils arm64 2.30-17ubuntu1 [3360 B] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-aarch64-linux-gnu arm64 2.30-17ubuntu1 [2183 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbinutils arm64 2.30-17ubuntu1 [428 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasan4 arm64 7.3.0-18ubuntu2 [335 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main arm64 libubsan0 arm64 7.3.0-18ubuntu2 [117 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++-7 arm64 7.3.0-18ubuntu2 [6142 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7 arm64 7.3.0-18ubuntu2 [5998 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++-7-dev arm64 7.3.0-18ubuntu2 [1460 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc-7-dev arm64 7.3.0-18ubuntu2 [831 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp-7 arm64 7.3.0-18ubuntu2 [5331 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7-base arm64 7.3.0-18ubuntu2 [19.0 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp arm64 4:7.3.0-3ubuntu3 [27.6 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc arm64 4:7.3.0-3ubuntu3 [5232 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++ arm64 4:7.3.0-3ubuntu3 [1580 B] Get:68 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 build-essential arm64 12.5ubuntu2 [4736 B] Get:71 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fslibs arm64 1.44.1-2 [2704 B] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcomerr2 arm64 1.44.1-2 [2692 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 libusb-0.1-4 arm64 2:0.1.12-32 [15.4 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 linux-libc-dev arm64 4.15.0-21.22 [985 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 pinentry-curses arm64 1.1.0-1build1 [32.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.5 MB in 1s (29.9 MB/s) (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_arm64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:arm64. (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_arm64.deb ... Unpacking libtinfo6:arm64 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:arm64 (6.1+20180210-2ubuntu2) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_arm64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_arm64.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_arm64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_arm64.deb ... Unpacking libext2fs2:arm64 (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:arm64 (1.44.1-2) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.1-2_arm64.deb ... Unpacking e2fsprogs (1.44.1-2) over (1.44.1-1) ... Setting up e2fsprogs (1.44.1-2) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_arm64.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-3_arm64.deb ... Unpacking perl (5.26.2-3) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-3_all.deb ... Unpacking perl-modules-5.26 (5.26.2-3) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-3_arm64.deb ... Unpacking libperl5.26:arm64 (5.26.2-3) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.2-3_arm64.deb ... Unpacking perl-base (5.26.2-3) over (5.26.1-6) ... Setting up perl-base (5.26.2-3) ... Selecting previously unselected package libncursesw6:arm64. (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-2ubuntu2_arm64.deb ... Unpacking libncursesw6:arm64 (6.1+20180210-2ubuntu2) ... Setting up libncursesw6:arm64 (6.1+20180210-2ubuntu2) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../libuuid1_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking libuuid1:arm64 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:arm64 (2.31.1-0.4ubuntu4) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../libblkid1_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking libblkid1:arm64 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:arm64 (2.31.1-0.4ubuntu4) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking libfdisk1:arm64 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:arm64 (2.31.1-0.4ubuntu4) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking libmount1:arm64 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:arm64 (2.31.1-0.4ubuntu4) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking libsmartcols1:arm64 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:arm64 (2.31.1-0.4ubuntu4) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../fdisk_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking fdisk (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.31.1-0.4ubuntu4) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../util-linux_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking util-linux (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.31.1-0.4ubuntu4) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.45_arm64.deb ... Unpacking base-passwd (3.5.45) over (3.5.44) ... Setting up base-passwd (3.5.45) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20180210-2ubuntu2_all.deb ... Unpacking ncurses-base (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-base (6.1+20180210-2ubuntu2) ... (Reading database ... 12608 files and directories currently installed.) Preparing to unpack .../libgomp1_8.1.0-1ubuntu3_arm64.deb ... Unpacking libgomp1:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libitm1_8.1.0-1ubuntu3_arm64.deb ... Unpacking libitm1:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Preparing to unpack .../gcc-8-base_8.1.0-1ubuntu3_arm64.deb ... Unpacking gcc-8-base:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:arm64 (8.1.0-1ubuntu3) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.1.0-1ubuntu3_arm64.deb ... Unpacking libgcc1:arm64 (1:8.1.0-1ubuntu3) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:arm64 (1:8.1.0-1ubuntu3) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../liblsan0_8.1.0-1ubuntu3_arm64.deb ... Unpacking liblsan0:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libtsan0_8.1.0-1ubuntu3_arm64.deb ... Unpacking libtsan0:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libcc1-0_8.1.0-1ubuntu3_arm64.deb ... Unpacking libcc1-0:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libatomic1_8.1.0-1ubuntu3_arm64.deb ... Unpacking libatomic1:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libstdc++6_8.1.0-1ubuntu3_arm64.deb ... Unpacking libstdc++6:arm64 (8.1.0-1ubuntu3) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:arm64 (8.1.0-1ubuntu3) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.7.0~alpha0ubuntu1_arm64.deb ... Unpacking libapt-pkg5.0:arm64 (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up libapt-pkg5.0:arm64 (1.7.0~alpha0ubuntu1) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../apt_1.7.0~alpha0ubuntu1_arm64.deb ... Unpacking apt (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up apt (1.7.0~alpha0ubuntu1) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../mount_2.31.1-0.4ubuntu4_arm64.deb ... Unpacking mount (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Preparing to unpack .../libcap-ng0_0.7.9-1_arm64.deb ... Unpacking libcap-ng0:arm64 (0.7.9-1) over (0.7.7-3.1) ... Setting up libcap-ng0:arm64 (0.7.9-1) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../libcom-err2_1.44.1-2_arm64.deb ... Unpacking libcom-err2:arm64 (1.44.1-2) over (1.44.1-1) ... Setting up libcom-err2:arm64 (1.44.1-2) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.31-1_arm64.deb ... Unpacking libgpg-error0:arm64 (1.31-1) over (1.27-6) ... Setting up libgpg-error0:arm64 (1.31-1) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../libss2_1.44.1-2_arm64.deb ... Unpacking libss2:arm64 (1.44.1-2) over (1.44.1-1) ... Setting up libss2:arm64 (1.44.1-2) ... (Reading database ... 12607 files and directories currently installed.) Preparing to unpack .../libncurses5_6.1+20180210-2ubuntu2_arm64.deb ... Unpacking libncurses5:arm64 (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libncursesw5_6.1+20180210-2ubuntu2_arm64.deb ... Unpacking libncursesw5:arm64 (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-2ubuntu2_arm64.deb ... Unpacking libtinfo5:arm64 (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up libtinfo5:arm64 (6.1+20180210-2ubuntu2) ... (Reading database ... 12605 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-3_arm64.deb ... Unpacking libgmp10:arm64 (2:6.1.2+dfsg-3) over (2:6.1.2+dfsg-2) ... Setting up libgmp10:arm64 (2:6.1.2+dfsg-3) ... (Reading database ... 12605 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.10-2_arm64.deb ... Unpacking libp11-kit0:arm64 (0.23.10-2) over (0.23.9-2) ... Setting up libp11-kit0:arm64 (0.23.10-2) ... (Reading database ... 12605 files and directories currently installed.) Preparing to unpack .../00-libprocps6_2%3a3.3.12-3ubuntu2_arm64.deb ... Unpacking libprocps6:arm64 (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../01-libncurses6_6.1+20180210-2ubuntu2_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20180210-2ubuntu2) ... Preparing to unpack .../02-procps_2%3a3.3.12-3ubuntu2_arm64.deb ... Unpacking procps (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Preparing to unpack .../03-libargon2-0_0~20161029-2_arm64.deb ... Unpacking libargon2-0:arm64 (0~20161029-2) over (0~20161029-1.1) ... Preparing to unpack .../04-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) over (7.0-3) ... Preparing to unpack .../05-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) over (7.0-3) ... Preparing to unpack .../06-libslang2_2.3.2-1ubuntu1_arm64.deb ... Unpacking libslang2:arm64 (2.3.2-1ubuntu1) over (2.3.1a-3ubuntu1) ... Preparing to unpack .../07-libsqlite3-0_3.23.1-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.23.1-1) over (3.22.0-1) ... Preparing to unpack .../08-tzdata_2018e-1_all.deb ... Unpacking tzdata (2018e-1) over (2018d-1) ... Preparing to unpack .../09-binutils-common_2.30-17ubuntu1_arm64.deb ... Unpacking binutils-common:arm64 (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../10-binutils_2.30-17ubuntu1_arm64.deb ... Unpacking binutils (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../11-binutils-aarch64-linux-gnu_2.30-17ubuntu1_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../12-libbinutils_2.30-17ubuntu1_arm64.deb ... Unpacking libbinutils:arm64 (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../13-libasan4_7.3.0-18ubuntu2_arm64.deb ... Unpacking libasan4:arm64 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../14-libubsan0_7.3.0-18ubuntu2_arm64.deb ... Unpacking libubsan0:arm64 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../15-g++-7_7.3.0-18ubuntu2_arm64.deb ... Unpacking g++-7 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../16-gcc-7_7.3.0-18ubuntu2_arm64.deb ... Unpacking gcc-7 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../17-libstdc++-7-dev_7.3.0-18ubuntu2_arm64.deb ... Unpacking libstdc++-7-dev:arm64 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../18-libgcc-7-dev_7.3.0-18ubuntu2_arm64.deb ... Unpacking libgcc-7-dev:arm64 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../19-cpp-7_7.3.0-18ubuntu2_arm64.deb ... Unpacking cpp-7 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../20-gcc-7-base_7.3.0-18ubuntu2_arm64.deb ... Unpacking gcc-7-base:arm64 (7.3.0-18ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../21-cpp_4%3a7.3.0-3ubuntu3_arm64.deb ... Unpacking cpp (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../22-gcc_4%3a7.3.0-3ubuntu3_arm64.deb ... Unpacking gcc (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../23-g++_4%3a7.3.0-3ubuntu3_arm64.deb ... Unpacking g++ (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../24-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../25-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../26-build-essential_12.5ubuntu2_arm64.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../27-e2fslibs_1.44.1-2_arm64.deb ... Unpacking e2fslibs:arm64 (1.44.1-2) over (1.44.1-1) ... Preparing to unpack .../28-libcomerr2_1.44.1-2_arm64.deb ... Unpacking libcomerr2:arm64 (1.44.1-2) over (1.44.1-1) ... Preparing to unpack .../29-libusb-0.1-4_2%3a0.1.12-32_arm64.deb ... Unpacking libusb-0.1-4:arm64 (2:0.1.12-32) over (2:0.1.12-31) ... Preparing to unpack .../30-linux-libc-dev_4.15.0-21.22_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.15.0-21.22) over (4.15.0-20.21) ... Preparing to unpack .../31-pinentry-curses_1.1.0-1build1_arm64.deb ... Unpacking pinentry-curses (1.1.0-1build1) over (1.1.0-1) ... Setting up libncurses5:arm64 (6.1+20180210-2ubuntu2) ... Setting up libgomp1:arm64 (8.1.0-1ubuntu3) ... Setting up libatomic1:arm64 (8.1.0-1ubuntu3) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:arm64 (8.1.0-1ubuntu3) ... Setting up e2fslibs:arm64 (1.44.1-2) ... Setting up libncursesw5:arm64 (6.1+20180210-2ubuntu2) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu May 10 03:23:00 UTC 2018. Universal Time is now: Thu May 10 03:23:00 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libtsan0:arm64 (8.1.0-1ubuntu3) ... Setting up linux-libc-dev:arm64 (4.15.0-21.22) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up perl-modules-5.26 (5.26.2-3) ... Setting up libprocps6:arm64 (2:3.3.12-3ubuntu2) ... Setting up liblsan0:arm64 (8.1.0-1ubuntu3) ... Setting up libargon2-0:arm64 (0~20161029-2) ... Setting up gcc-7-base:arm64 (7.3.0-18ubuntu2) ... Setting up binutils-common:arm64 (2.30-17ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:arm64 (5.26.2-3) ... Setting up libsqlite3-0:arm64 (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:arm64 (1.44.1-2) ... Setting up libslang2:arm64 (2.3.2-1ubuntu1) ... Setting up libncurses6:arm64 (6.1+20180210-2ubuntu2) ... Setting up libusb-0.1-4:arm64 (2:0.1.12-32) ... Setting up libitm1:arm64 (8.1.0-1ubuntu3) ... Setting up libasan4:arm64 (7.3.0-18ubuntu2) ... Setting up libbinutils:arm64 (2.30-17ubuntu1) ... Setting up libubsan0:arm64 (7.3.0-18ubuntu2) ... Setting up libgcc-7-dev:arm64 (7.3.0-18ubuntu2) ... Setting up cpp-7 (7.3.0-18ubuntu2) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:arm64 (7.3.0-18ubuntu2) ... Setting up perl (5.26.2-3) ... Setting up binutils-aarch64-linux-gnu (2.30-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-18ubuntu2) ... Setting up g++-7 (7.3.0-18ubuntu2) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14865423 arm64 cosmic-proposed -c chroot:build-PACKAGEBUILD-14865423 --arch=arm64 --dist=cosmic-proposed --nolog clipper_2.1.20160809-1.dsc Initiating build PACKAGEBUILD-14865423 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:04:12 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-018.buildd +==============================================================================+ | clipper 2.1.20160809-1 (arm64) 10 May 2018 03:23 | +==============================================================================+ Package: clipper Version: 2.1.20160809-1 Source Version: 2.1.20160809-1 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/clipper-jrlBK3/clipper-2.1.20160809' with '<>' I: NOTICE: Log filtering will replace 'build/clipper-jrlBK3' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14865423/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clipper_2.1.20160809-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-zG5eWe/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-zG5eWe/apt_archive ./ InRelease Get:2 copy:/<>/resolver-zG5eWe/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-zG5eWe/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-zG5eWe/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-zG5eWe/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (95.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-zG5eWe/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12614 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev Filtered Build-Depends: debhelper (>= 11), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev dpkg-deb: building package 'sbuild-build-depends-clipper-dummy' in '/<>/resolver-JkJ6wg/apt_archive/sbuild-build-depends-clipper-dummy.deb'. Ign:1 copy:/<>/resolver-JkJ6wg/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JkJ6wg/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-JkJ6wg/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JkJ6wg/apt_archive ./ Sources [243 B] Get:5 copy:/<>/resolver-JkJ6wg/apt_archive ./ Packages [559 B] Fetched 2921 B in 0s (99.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clipper build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcroco3 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libltdl7 libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi2 libpciaccess0 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sfftw-dev sfftw2 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz mpi-defaults-bin gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff libhwloc-contrib-plugins pciutils libtool-doc gcj-jdk m4-doc apparmor less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers openmpi-bin libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libcroco3 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libltdl7 libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi2 libpciaccess0 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sbuild-build-depends-clipper-dummy sfftw-dev sfftw2 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 26.0 MB of archives. After this operation, 97.9 MB of additional disk space will be used. Get:1 copy:/<>/resolver-JkJ6wg/apt_archive ./ sbuild-build-depends-clipper-dummy 0.invalid.0 [892 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbsd0 arm64 0.8.7-1 [36.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpipeline1 arm64 1.5.0-1 [22.0 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 man-db arm64 2.8.3-2 [993 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic-mgc arm64 1:5.33-2 [193 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic1 arm64 1:5.33-2 [62.7 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 file arm64 1:5.33-2 [22.6 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-0 arm64 2.56.1-2ubuntu1 [981 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 libicu60 arm64 60.2-3ubuntu3 [7985 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxml2 arm64 2.9.4+dfsg1-6.1ubuntu1 [547 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext-base arm64 0.19.8.1-6build1 [46.5 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnuma1 arm64 2.0.11-2.2 [19.6 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main arm64 autopoint all 0.19.8.1-6build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libtool all 2.4.6-2.1 [195 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-autoreconf all 17 [15.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-strip-nondeterminism all 0.041-1 [5188 B] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext arm64 0.19.8.1-6build1 [823 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 po-debconf all 1.0.20 [232 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main arm64 debhelper all 11.2.1ubuntu1 [906 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libltdl7 arm64 2.4.6-2.1 [36.3 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc5 arm64 1.11.10-1 [85.2 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnl-3-200 arm64 3.2.29-0ubuntu3 [44.4 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnl-route-3-200 arm64 3.2.29-0ubuntu3 [116 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libibverbs1 arm64 18.0-1 [42.9 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpciaccess0 arm64 0.14-1 [15.5 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main arm64 ocl-icd-libopencl1 arm64 2.2.11-1ubuntu1 [29.2 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc-plugins arm64 1.11.10-1 [11.1 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libopenmpi2 arm64 2.1.1-8 [1746 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/universe arm64 fftw2 arm64 2.1.5-4.2 [162 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/universe arm64 fftw-dev arm64 2.1.5-4.2 [182 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgfortran4 arm64 7.3.0-18ubuntu2 [249 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgfortran-7-dev arm64 7.3.0-18ubuntu2 [300 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 gfortran-7 arm64 7.3.0-18ubuntu2 [5708 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 gfortran arm64 4:7.3.0-3ubuntu3 [1340 B] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libmmdb2-0 arm64 2.0.5-1 [310 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libmmdb2-dev arm64 2.0.5-1 [91.1 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/universe arm64 sfftw2 arm64 2.1.5-4.2 [160 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/universe arm64 sfftw-dev arm64 2.1.5-4.2 [182 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libccp4-data all 6.5.1-1 [61.3 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libccp4c0 arm64 6.5.1-1 [73.5 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libccp4f0 arm64 6.5.1-1 [192 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libccp4-dev arm64 6.5.1-1 [41.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.0 MB in 2s (12.8 MB/s) Selecting previously unselected package libbsd0:arm64. (Reading database ... 12614 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_arm64.deb ... Unpacking libbsd0:arm64 (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_arm64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_arm64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-2_arm64.deb ... Unpacking libmagic-mgc (1:5.33-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../06-libmagic1_1%3a5.33-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.33-2) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.33-2_arm64.deb ... Unpacking file (1:5.33-2) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../08-libglib2.0-0_2.56.1-2ubuntu1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:arm64. Preparing to unpack .../09-libicu60_60.2-3ubuntu3_arm64.deb ... Unpacking libicu60:arm64 (60.2-3ubuntu3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../10-libxml2_2.9.4+dfsg1-6.1ubuntu1_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-6.1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-6build1_arm64.deb ... Unpacking gettext-base (0.19.8.1-6build1) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../12-libnuma1_2.0.11-2.2_arm64.deb ... Unpacking libnuma1:arm64 (2.0.11-2.2) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../13-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-1_arm64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.15.1-3ubuntu2_all.deb ... Unpacking automake (1:1.15.1-3ubuntu2) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.19.8.1-6build1_all.deb ... Unpacking autopoint (0.19.8.1-6build1) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.6-2.1_all.deb ... Unpacking libtool (2.4.6-2.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_17_all.deb ... Unpacking dh-autoreconf (17) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.60-1_all.deb ... Unpacking libarchive-zip-perl (1.60-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_0.041-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.041-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../23-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_0.041-1_all.deb ... Unpacking dh-strip-nondeterminism (0.041-1) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../25-libcroco3_0.6.12-2_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.19.8.1-6build1_arm64.deb ... Unpacking gettext (0.19.8.1-6build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_11.2.1ubuntu1_all.deb ... Unpacking debhelper (11.2.1ubuntu1) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../30-libltdl7_2.4.6-2.1_arm64.deb ... Unpacking libltdl7:arm64 (2.4.6-2.1) ... Selecting previously unselected package libhwloc5:arm64. Preparing to unpack .../31-libhwloc5_1.11.10-1_arm64.deb ... Unpacking libhwloc5:arm64 (1.11.10-1) ... Selecting previously unselected package libnl-3-200:arm64. Preparing to unpack .../32-libnl-3-200_3.2.29-0ubuntu3_arm64.deb ... Unpacking libnl-3-200:arm64 (3.2.29-0ubuntu3) ... Selecting previously unselected package libnl-route-3-200:arm64. Preparing to unpack .../33-libnl-route-3-200_3.2.29-0ubuntu3_arm64.deb ... Unpacking libnl-route-3-200:arm64 (3.2.29-0ubuntu3) ... Selecting previously unselected package libibverbs1:arm64. Preparing to unpack .../34-libibverbs1_18.0-1_arm64.deb ... Unpacking libibverbs1:arm64 (18.0-1) ... Selecting previously unselected package libpciaccess0:arm64. Preparing to unpack .../35-libpciaccess0_0.14-1_arm64.deb ... Unpacking libpciaccess0:arm64 (0.14-1) ... Selecting previously unselected package ocl-icd-libopencl1:arm64. Preparing to unpack .../36-ocl-icd-libopencl1_2.2.11-1ubuntu1_arm64.deb ... Unpacking ocl-icd-libopencl1:arm64 (2.2.11-1ubuntu1) ... Selecting previously unselected package libhwloc-plugins. Preparing to unpack .../37-libhwloc-plugins_1.11.10-1_arm64.deb ... Unpacking libhwloc-plugins (1.11.10-1) ... Selecting previously unselected package libopenmpi2:arm64. Preparing to unpack .../38-libopenmpi2_2.1.1-8_arm64.deb ... Unpacking libopenmpi2:arm64 (2.1.1-8) ... Selecting previously unselected package fftw2. Preparing to unpack .../39-fftw2_2.1.5-4.2_arm64.deb ... Unpacking fftw2 (2.1.5-4.2) ... Selecting previously unselected package fftw-dev. Preparing to unpack .../40-fftw-dev_2.1.5-4.2_arm64.deb ... Unpacking fftw-dev (2.1.5-4.2) ... Selecting previously unselected package libgfortran4:arm64. Preparing to unpack .../41-libgfortran4_7.3.0-18ubuntu2_arm64.deb ... Unpacking libgfortran4:arm64 (7.3.0-18ubuntu2) ... Selecting previously unselected package libgfortran-7-dev:arm64. Preparing to unpack .../42-libgfortran-7-dev_7.3.0-18ubuntu2_arm64.deb ... Unpacking libgfortran-7-dev:arm64 (7.3.0-18ubuntu2) ... Selecting previously unselected package gfortran-7. Preparing to unpack .../43-gfortran-7_7.3.0-18ubuntu2_arm64.deb ... Unpacking gfortran-7 (7.3.0-18ubuntu2) ... Selecting previously unselected package gfortran. Preparing to unpack .../44-gfortran_4%3a7.3.0-3ubuntu3_arm64.deb ... Unpacking gfortran (4:7.3.0-3ubuntu3) ... Selecting previously unselected package libmmdb2-0:arm64. Preparing to unpack .../45-libmmdb2-0_2.0.5-1_arm64.deb ... Unpacking libmmdb2-0:arm64 (2.0.5-1) ... Selecting previously unselected package libmmdb2-dev. Preparing to unpack .../46-libmmdb2-dev_2.0.5-1_arm64.deb ... Unpacking libmmdb2-dev (2.0.5-1) ... Selecting previously unselected package sfftw2. Preparing to unpack .../47-sfftw2_2.1.5-4.2_arm64.deb ... Unpacking sfftw2 (2.1.5-4.2) ... Selecting previously unselected package sfftw-dev. Preparing to unpack .../48-sfftw-dev_2.1.5-4.2_arm64.deb ... Unpacking sfftw-dev (2.1.5-4.2) ... Selecting previously unselected package libccp4-data. Preparing to unpack .../49-libccp4-data_6.5.1-1_all.deb ... Unpacking libccp4-data (6.5.1-1) ... Selecting previously unselected package libccp4c0:arm64. Preparing to unpack .../50-libccp4c0_6.5.1-1_arm64.deb ... Unpacking libccp4c0:arm64 (6.5.1-1) ... Selecting previously unselected package libccp4f0:arm64. Preparing to unpack .../51-libccp4f0_6.5.1-1_arm64.deb ... Unpacking libccp4f0:arm64 (6.5.1-1) ... Selecting previously unselected package libccp4-dev:arm64. Preparing to unpack .../52-libccp4-dev_6.5.1-1_arm64.deb ... Unpacking libccp4-dev:arm64 (6.5.1-1) ... Selecting previously unselected package sbuild-build-depends-clipper-dummy. Preparing to unpack .../53-sbuild-build-depends-clipper-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-clipper-dummy (0.invalid.0) ... Setting up libicu60:arm64 (60.2-3ubuntu3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libgfortran4:arm64 (7.3.0-18ubuntu2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libnuma1:arm64 (2.0.11-2.2) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:arm64 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:arm64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:arm64 (0.8.7-1) ... Setting up libccp4-data (6.5.1-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:arm64 (1:5.33-2) ... Setting up libcroco3:arm64 (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:arm64 (2.4.6-2.1) ... Setting up libgfortran-7-dev:arm64 (7.3.0-18ubuntu2) ... Setting up libpciaccess0:arm64 (0.14-1) ... Setting up gfortran-7 (7.3.0-18ubuntu2) ... Setting up libmmdb2-0:arm64 (2.0.5-1) ... Setting up ocl-icd-libopencl1:arm64 (2.2.11-1ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:arm64 (3.2.29-0ubuntu3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up gfortran (4:7.3.0-3ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libmmdb2-dev (2.0.5-1) ... Setting up libccp4c0:arm64 (6.5.1-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libccp4f0:arm64 (6.5.1-1) ... Setting up libnl-route-3-200:arm64 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:arm64 (1.11.10-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libccp4-dev:arm64 (6.5.1-1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:arm64 (18.0-1) ... Setting up po-debconf (1.0.20) ... Setting up libopenmpi2:arm64 (2.1.1-8) ... Setting up sfftw2 (2.1.5-4.2) ... Setting up sfftw-dev (2.1.5-4.2) ... Setting up fftw2 (2.1.5-4.2) ... Setting up fftw-dev (2.1.5-4.2) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-clipper-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-124-generic arm64 (aarch64) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-18ubuntu2 gcc-7_7.3.0-18ubuntu2 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-18ubuntu2 libstdc++6_8.1.0-1ubuntu3 linux-libc-dev_4.15.0-21.22 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-aarch64-linux-gnu_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-18ubuntu2 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 fftw-dev_2.1.5-4.2 fftw2_2.1.5-4.2 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-18ubuntu2 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-18ubuntu2 gcc-7-base_7.3.0-18ubuntu2 gcc-8-base_8.1.0-1ubuntu3 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gfortran_4:7.3.0-3ubuntu3 gfortran-7_7.3.0-18ubuntu2 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-18ubuntu2 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu3 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu3 libccp4-data_6.5.1-1 libccp4-dev_6.5.1-1 libccp4c0_6.5.1-1 libccp4f0_6.5.1-1 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libext2fs2_1.44.1-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-18ubuntu2 libgcc1_1:8.1.0-1ubuntu3 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-18ubuntu2 libgfortran4_7.3.0-18ubuntu2 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu3 libgpg-error0_1.31-1 libhogweed4_3.4-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs1_18.0-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-1ubuntu3 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-1ubuntu3 libltdl7_2.4.6-2.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmmdb2-0_2.0.5-1 libmmdb2-dev_2.0.5-1 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libnuma1_2.0.11-2.2 libopenmpi2_2.1.1-8 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-18ubuntu2 libstdc++6_8.1.0-1ubuntu3 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libtsan0_8.1.0-1ubuntu3 libubsan0_7.3.0-18ubuntu2 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-21.22 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-clipper-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sfftw-dev_2.1.5-4.2 sfftw2_2.1.5-4.2 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun May 6 16:41:15 2018 UTC gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clipper_2.1.20160809-1.dsc dpkg-source: info: extracting clipper in clipper-2.1.20160809 dpkg-source: info: unpacking clipper_2.1.20160809.orig.tar.gz dpkg-source: info: unpacking clipper_2.1.20160809-1.debian.tar.xz dpkg-source: info: applying add-mmdb2-to-examples-LIBS.patch dpkg-source: info: applying narrowing-conversions.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14865423 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14865423 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14865423 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20160809-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clipper-2.1.20160809 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with autoreconf --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_auto_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2/ debian/libclipper-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with autoreconf --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_update_autotools_config -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/.debhelper/bucket/files cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp mv debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp mv debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:10: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking mmdb2/mmdb_manager.h usability... yes checking mmdb2/mmdb_manager.h presence... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/<>' dh_auto_build -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j4 -Oline make all-recursive Making all in clipper Making all in core make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_stats.lo `test -f 'clipper_stats.cpp' || echo './'`clipper_stats.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_stats.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_stats.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_data.lo `test -f 'hkl_data.cpp' || echo './'`hkl_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_data.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_test.lo `test -f 'clipper_test.cpp' || echo './'`clipper_test.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_test.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_test.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_datatypes.lo `test -f 'hkl_datatypes.cpp' || echo './'`hkl_datatypes.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_datatypes.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_datatypes.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_info.lo `test -f 'hkl_info.cpp' || echo './'`hkl_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_info.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_info.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup_data.lo `test -f 'spacegroup_data.cpp' || echo './'`spacegroup_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c spacegroup_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup_data.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_util.lo `test -f 'clipper_util.cpp' || echo './'`clipper_util.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_util.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_util.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_types.lo `test -f 'clipper_types.cpp' || echo './'`clipper_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_types.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-spacegroup.lo `test -f 'spacegroup.cpp' || echo './'`spacegroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c spacegroup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-spacegroup.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_lookup.lo `test -f 'hkl_lookup.cpp' || echo './'`hkl_lookup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_lookup.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_lookup.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-symop.lo `test -f 'symop.cpp' || echo './'`symop.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c symop.cpp -fPIC -DPIC -o .libs/libclipper_core_la-symop.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container.lo `test -f 'container.cpp' || echo './'`container.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_hkl.lo `test -f 'container_hkl.cpp' || echo './'`container_hkl.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_hkl.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_hkl.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_interp.lo `test -f 'map_interp.cpp' || echo './'`map_interp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c map_interp.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_interp.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-rotation.lo `test -f 'rotation.cpp' || echo './'`rotation.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c rotation.cpp -fPIC -DPIC -o .libs/libclipper_core_la-rotation.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_map.lo `test -f 'container_map.cpp' || echo './'`container_map.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_map.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_map.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-container_types.lo `test -f 'container_types.cpp' || echo './'`container_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c container_types.cpp -fPIC -DPIC -o .libs/libclipper_core_la-container_types.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-map_utils.lo `test -f 'map_utils.cpp' || echo './'`map_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c map_utils.cpp -fPIC -DPIC -o .libs/libclipper_core_la-map_utils.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_thread.lo `test -f 'clipper_thread.cpp' || echo './'`clipper_thread.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_thread.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_thread.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap.lo `test -f 'nxmap.cpp' || echo './'`nxmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_operators.lo `test -f 'hkl_operators.cpp' || echo './'`hkl_operators.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_operators.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_operators.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_data.lo `test -f 'test_data.cpp' || echo './'`test_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_data.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_data.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-xmap.lo `test -f 'xmap.cpp' || echo './'`xmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c xmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-xmap.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-test_core.lo `test -f 'test_core.cpp' || echo './'`test_core.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_core.cpp -fPIC -DPIC -o .libs/libclipper_core_la-test_core.o make[4]: Leaving directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-core.la -rpath /usr/lib/aarch64-linux-gnu libclipper_core_la-atomsf.lo libclipper_core_la-coords.lo libclipper_core_la-nxmap_operator.lo libclipper_core_la-cell.lo libclipper_core_la-derivs.lo libclipper_core_la-ramachandran.lo libclipper_core_la-clipper_instance.lo libclipper_core_la-fftmap.lo libclipper_core_la-resol_basisfn.lo libclipper_core_la-clipper_memory.lo libclipper_core_la-fftmap_sparse.lo libclipper_core_la-resol_fn.lo libclipper_core_la-clipper_message.lo libclipper_core_la-hkl_compute.lo libclipper_core_la-resol_targetfn.lo libclipper_core_la-clipper_stats.lo libclipper_core_la-hkl_data.lo libclipper_core_la-rotation.lo libclipper_core_la-clipper_test.lo libclipper_core_la-hkl_datatypes.lo libclipper_core_la-spacegroup.lo libclipper_core_la-clipper_types.lo libclipper_core_la-hkl_info.lo libclipper_core_la-spacegroup_data.lo libclipper_core_la-clipper_util.lo libclipper_core_la-hkl_lookup.lo libclipper_core_la-symop.lo libclipper_core_la-container.lo libclipper_core_la-hkl_operators.lo libclipper_core_la-container_hkl.lo libclipper_core_la-map_interp.lo libclipper_core_la-container_map.lo libclipper_core_la-map_utils.lo libclipper_core_la-xmap.lo libclipper_core_la-container_types.lo libclipper_core_la-nxmap.lo libclipper_core_la-clipper_thread.lo libclipper_core_la-test_core.lo libclipper_core_la-test_data.lo -lsrfftw -lsfftw -lpthread -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o .libs/libclipper_core_la-atomsf.o .libs/libclipper_core_la-coords.o .libs/libclipper_core_la-nxmap_operator.o .libs/libclipper_core_la-cell.o .libs/libclipper_core_la-derivs.o .libs/libclipper_core_la-ramachandran.o .libs/libclipper_core_la-clipper_instance.o .libs/libclipper_core_la-fftmap.o .libs/libclipper_core_la-resol_basisfn.o .libs/libclipper_core_la-clipper_memory.o .libs/libclipper_core_la-fftmap_sparse.o .libs/libclipper_core_la-resol_fn.o .libs/libclipper_core_la-clipper_message.o .libs/libclipper_core_la-hkl_compute.o .libs/libclipper_core_la-resol_targetfn.o .libs/libclipper_core_la-clipper_stats.o .libs/libclipper_core_la-hkl_data.o .libs/libclipper_core_la-rotation.o .libs/libclipper_core_la-clipper_test.o .libs/libclipper_core_la-hkl_datatypes.o .libs/libclipper_core_la-spacegroup.o .libs/libclipper_core_la-clipper_types.o .libs/libclipper_core_la-hkl_info.o .libs/libclipper_core_la-spacegroup_data.o .libs/libclipper_core_la-clipper_util.o .libs/libclipper_core_la-hkl_lookup.o .libs/libclipper_core_la-symop.o .libs/libclipper_core_la-container.o .libs/libclipper_core_la-hkl_operators.o .libs/libclipper_core_la-container_hkl.o .libs/libclipper_core_la-map_interp.o .libs/libclipper_core_la-container_map.o .libs/libclipper_core_la-map_utils.o .libs/libclipper_core_la-xmap.o .libs/libclipper_core_la-container_types.o .libs/libclipper_core_la-nxmap.o .libs/libclipper_core_la-clipper_thread.o .libs/libclipper_core_la-test_core.o .libs/libclipper_core_la-test_data.o -lsrfftw -lsfftw -lpthread -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-core.so.2 -o .libs/libclipper-core.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-core.so.2" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-core.so" && ln -s "libclipper-core.so.2.0.1" "libclipper-core.so") libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[4]: Leaving directory '/<>/clipper/core' Making all in contrib make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o convolution_search.lo convolution_search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o edcalc.lo edcalc.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc.lo sfcalc.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfcalc_obs.lo sfcalc_obs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfcalc_obs.cpp -fPIC -DPIC -o .libs/sfcalc_obs.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o function_object_bases.lo function_object_bases.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fffear.lo fffear.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mapfilter.lo mapfilter.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o originmatch.lo originmatch.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o skeleton.lo skeleton.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfscale.lo sfscale.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sfweight.lo sfweight.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o test_contrib.lo test_contrib.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/aarch64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/<>/clipper/core/.libs ../core/.libs/libclipper-core.so -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[4]: Leaving directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_data.lo minimol/minimol_data.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_data.cpp -fPIC -DPIC -o minimol/.libs/minimol_data.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/container_minimol.lo minimol/container_minimol.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/container_minimol.cpp -fPIC -DPIC -o minimol/.libs/container_minimol.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_seq.lo minimol/minimol_seq.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_seq.cpp -fPIC -DPIC -o minimol/.libs/minimol_seq.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o phs/phs_io.lo phs/phs_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol_io.lo minimol/minimol_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol_io.cpp -fPIC -DPIC -o minimol/.libs/minimol_io.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cif/cif_data_io.lo cif/cif_data_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cif/cif_data_io.cpp -fPIC -DPIC -o cif/.libs/cif_data_io.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o minimol/minimol.lo minimol/minimol.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c minimol/minimol.cpp -fPIC -DPIC -o minimol/.libs/minimol.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/aarch64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/aarch64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/aarch64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/aarch64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/aarch64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns/cns_map_io.lo cns/cns_map_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/aarch64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o make[4]: Leaving directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/aarch64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lccp4c -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) make[4]: Leaving directory '/<>/clipper' Making all in examples make[3]: Nothing to be done for 'all'. dh_auto_test -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j4 -Oline check VERBOSE=1 Making check in clipper Making check in core make[3]: Nothing to be done for 'check'. Making check in contrib make[3]: Nothing to be done for 'check'. make[3]: Nothing to be done for 'check-am'. Making check in examples make rfltest sgtest symtest ccad diffmap maptest mtztest cmaplocal ffttest sktest cnstest cns2mtz maketestdata sftest phstest ciftophs ftndemo make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sgtest.o sgtest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o symtest.o symtest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o diffmap.o diffmap.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o maptest.o maptest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ccad.o ccad.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o rfltest.o rfltest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mtztest.o mtztest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cnstest.o cnstest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sktest.o sktest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ffttest.o ffttest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o maketestdata.o maketestdata.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o phstest.o phstest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' f77 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -c -o ftndemo.o ftndemo.f make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o rfltest rfltest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/rfltest rfltest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o sgtest sgtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/sgtest sgtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o symtest symtest.o ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/symtest symtest.o ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ciftophs.o ciftophs.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccad ccad.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ccad ccad.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o diffmap diffmap.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/diffmap diffmap.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o maptest maptest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/maptest maptest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mtztest mtztest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/mtztest mtztest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cmaplocal cmaplocal.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cmaplocal cmaplocal.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ffttest ffttest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ffttest ffttest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o sktest sktest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/sktest sktest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cnstest cnstest.o ../clipper/cns/libclipper-cns.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cnstest cnstest.o ../clipper/cns/.libs/libclipper-cns.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o maketestdata maketestdata.o ../clipper/mmdb/libclipper-mmdb.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/maketestdata maketestdata.o ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/phstest phstest.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lgfortran -lm -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ftndemo ftndemo.o ../clipper/fortran/.libs/libclipper-fortran.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lgfortran -lm -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ciftophs ciftophs.o ../clipper/phs/libclipper-phs.la ../clipper/cif/libclipper-cif.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ciftophs ciftophs.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/cif/.libs/libclipper-cif.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sftest.o sftest.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cns2mtz.o cns2mtz.cpp make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>/examples' /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/aarch64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with autoreconf --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_testroot -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_prep -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2/ debian/libclipper2/ dh_auto_install -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in clipper make[2]: Entering directory '/<>/clipper' Making install in core make[3]: Entering directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/<>/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/<>/clipper/core' make[3]: Leaving directory '/<>/clipper/core' Making install in contrib make[3]: Entering directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /<>/clipper/contrib; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/aarch64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/<>/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/<>/clipper/contrib' make[3]: Leaving directory '/<>/clipper/contrib' make[3]: Entering directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/aarch64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/aarch64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/aarch64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o phs/.libs/phs_io.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/aarch64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o cif/.libs/cif_data_io.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/aarch64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lccp4c -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/aarch64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/aarch64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/7/crtbeginS.o fortran/.libs/f_interface.o -L/<>/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lclipper-core -lclipper-contrib -L/usr/lib/gcc/aarch64-linux-gnu/7 -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/7/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/7/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/7/../../../aarch64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/<>/debian/tmp/usr/include/clipper/ccp4' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/<>/debian/tmp/usr/include/clipper/cif' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/<>/debian/tmp/usr/include/clipper/cns' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/<>/debian/tmp/usr/include/clipper/minimol' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/<>/debian/tmp/usr/include/clipper/mmdb' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/<>/debian/tmp/usr/include/clipper/phs' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/<>/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' make[2]: Leaving directory '/<>/clipper' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/<>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -d debian/libclipper-dev//usr/lib/aarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig debian/libclipper-dev//usr/lib/aarch64-linux-gnu/ install -d debian/.debhelper/generated/libclipper-dev install -d debian/libclipper2//usr/lib/aarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2 debian/tmp/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2//usr/lib/aarch64-linux-gnu/ install -d debian/.debhelper/generated/libclipper2 install -d debian/.debhelper/generated/libclipper-doc dh_installdocs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/copyright debian/libclipper2/usr/share/doc/libclipper2/copyright dh_installchangelogs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -p -m0644 debian/changelog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian install -p -m0644 debian/changelog debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian dh_installexamples -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_lintian -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper2/usr/share/lintian/overrides install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2 dh_perl -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_link -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-contrib.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/aarch64-linux-gnu/libclipper-cns.so rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2 rm -f debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2 dh_strip_nondeterminism -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_compress -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper-dev cd debian/libclipper2 chmod a-x usr/share/doc/libclipper2/changelog.Debian chmod a-x usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog.Debian gzip -9nf usr/share/doc/libclipper2/changelog.Debian cd '/<>' cd '/<>' dh_fixperms -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find debian/libclipper-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_strip -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b/5660578c31f24d42e43c67565d085879f4b9e0.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b/5660578c31f24d42e43c67565d085879f4b9e0.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b/5660578c31f24d42e43c67565d085879f4b9e0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/8b/5660578c31f24d42e43c67565d085879f4b9e0.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7c objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7c/d3708aad601cdfa53c8a5ee0b0106c81cc2517.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7c/d3708aad601cdfa53c8a5ee0b0106c81cc2517.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7c/d3708aad601cdfa53c8a5ee0b0106c81cc2517.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/7c/d3708aad601cdfa53c8a5ee0b0106c81cc2517.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/33/0b892edf3c6f77c7e2ba9fa91b32e2b9e818c4.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/33/0b892edf3c6f77c7e2ba9fa91b32e2b9e818c4.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/33/0b892edf3c6f77c7e2ba9fa91b32e2b9e818c4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/33/0b892edf3c6f77c7e2ba9fa91b32e2b9e818c4.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f1/8e36dea78be0b63e3115cc95fe2faeb822961b.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f1/8e36dea78be0b63e3115cc95fe2faeb822961b.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f1/8e36dea78be0b63e3115cc95fe2faeb822961b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/f1/8e36dea78be0b63e3115cc95fe2faeb822961b.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ec/4d61e09663b29280e4ac4ab214bdb46753d4dc.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ec/4d61e09663b29280e4ac4ab214bdb46753d4dc.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ec/4d61e09663b29280e4ac4ab214bdb46753d4dc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ec/4d61e09663b29280e4ac4ab214bdb46753d4dc.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/38/f69a345372734f1295a32b0a2aa778c489c3e1.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/38/f69a345372734f1295a32b0a2aa778c489c3e1.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/38/f69a345372734f1295a32b0a2aa778c489c3e1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/38/f69a345372734f1295a32b0a2aa778c489c3e1.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43/4b70b4e0af1fe4de625cf5ac6f1e6f8b7c7f73.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43/4b70b4e0af1fe4de625cf5ac6f1e6f8b7c7f73.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43/4b70b4e0af1fe4de625cf5ac6f1e6f8b7c7f73.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/43/4b70b4e0af1fe4de625cf5ac6f1e6f8b7c7f73.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/42/dd2620ac09d30d5489670dd572562dc2f05d16.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/42/dd2620ac09d30d5489670dd572562dc2f05d16.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/42/dd2620ac09d30d5489670dd572562dc2f05d16.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/42/dd2620ac09d30d5489670dd572562dc2f05d16.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/72/a7bdfc2bd198f8e6835233fd323a68fef72de9.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/72/a7bdfc2bd198f8e6835233fd323a68fef72de9.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/72/a7bdfc2bd198f8e6835233fd323a68fef72de9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/72/a7bdfc2bd198f8e6835233fd323a68fef72de9.debug debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc ln -s libclipper2 debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc/libclipper2-dbgsym dh_makeshlibs -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2/DEBIAN/shlibs install -d debian/libclipper2/DEBIAN echo "libclipper-ccp4 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-core 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs chmod 0644 -- debian/libclipper2/DEBIAN/shlibs chown 0:0 -- debian/libclipper2/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers dh_shlibdeps -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 dh_installdeb -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2/triggers debian/libclipper2/DEBIAN/triggers dh_gencontrol -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -Pdebian/libclipper-dev echo misc:Depends= >> debian/libclipper2.substvars echo misc:Pre-Depends= >> debian/libclipper2.substvars install -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=330b892edf3c6f77c7e2ba9fa91b32e2b9e818c4 38f69a345372734f1295a32b0a2aa778c489c3e1 42dd2620ac09d30d5489670dd572562dc2f05d16 434b70b4e0af1fe4de625cf5ac6f1e6f8b7c7f73 72a7bdfc2bd198f8e6835233fd323a68fef72de9 7cd3708aad601cdfa53c8a5ee0b0106c81cc2517 8b5660578c31f24d42e43c67565d085879f4b9e0 ec4d61e09663b29280e4ac4ab214bdb46753d4dc f18e36dea78be0b63e3115cc95fe2faeb822961b" -DSection=debug -DPackage-Type=ddeb "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)" chmod 0644 -- debian/libclipper-dev/DEBIAN/control chown 0:0 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/libclipper2 chmod 0644 -- debian/libclipper2/DEBIAN/control chown 0:0 -- debian/libclipper2/DEBIAN/control dh_md5sums -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" (cd debian/libclipper-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libclipper2 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chown 0:0 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper2/DEBIAN/md5sums chown 0:0 -- debian/libclipper2/DEBIAN/md5sums (cd debian/.debhelper/libclipper2/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums dh_builddeb -a "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --build debian/libclipper-dev .. dpkg-deb --build debian/libclipper2 .. install -d debian/.debhelper/scratch-space/build-libclipper2 dpkg-deb --build debian/.debhelper/libclipper2/dbgsym-root debian/.debhelper/scratch-space/build-libclipper2 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libclipper2 (in debian/libclipper2); do_strip: , oemstrip: pkgstriptranslations: processing libclipper-dev (in debian/libclipper-dev); do_strip: , oemstrip: pkgstriptranslations: processing libclipper2-dbgsym (in debian/.debhelper/libclipper2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libclipper2/DEBIAN/control, package libclipper2, directory debian/libclipper2 pkgstripfiles: processing control file: debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control, package libclipper2-dbgsym, directory debian/.debhelper/libclipper2/dbgsym-root INFO: pkgstripfiles: waiting for lock (libclipper2) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2-dbgsym' in 'debian/.debhelper/scratch-space/build-libclipper2/libclipper2-dbgsym_2.1.20160809-1_arm64.deb'. INFO: pkgstripfiles: waiting for lock (libclipper2) ... INFO: pkgstripfiles: waiting for lock (libclipper2) ... INFO: pkgstripfiles: waiting for lock (libclipper2) ... INFO: pkgstripfiles: waiting for lock (libclipper2) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libclipper-dev/DEBIAN/control, package libclipper-dev, directory debian/libclipper-dev Searching for duplicated docs in dependency libclipper2... symlinking changelog.Debian.gz in libclipper-dev to file in libclipper2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20160809-1_arm64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20160809-1_arm64.deb'. Renaming libclipper2-dbgsym_2.1.20160809-1_arm64.deb to libclipper2-dbgsym_2.1.20160809-1_arm64.ddeb mv debian/.debhelper/scratch-space/build-libclipper2/libclipper2-dbgsym_2.1.20160809-1_arm64.deb ../libclipper2-dbgsym_2.1.20160809-1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clipper_2.1.20160809-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clipper-2.1.20160809 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180510-0327 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clipper_2.1.20160809-1_arm64.changes: ------------------------------------- Format: 1.8 Date: Thu, 03 May 2018 10:24:19 -0400 Source: clipper Binary: libclipper-dev libclipper2 libclipper-doc Architecture: arm64 Version: 2.1.20160809-1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: libclipper-dev - object oriented development kit for crystallographic computing libclipper-doc - doxygen generated documentation for libclipper libclipper2 - object oriented library for crystallographic computing Closes: 787804 811763 Changes: clipper (2.1.20160809-1) unstable; urgency=medium . [ Picca Frederic-Emmanuel ] * Set HTML_TIMESTAMP from YES to NO in debian/Doxyfile for reproducibility thanks akira for the patch (Closes: #787804) . [ Andrius Merkys ] * New upstream release. * Upload to unstable. * add-mmdb2-to-examples-LIBS.patch: New patch, fixes building of examples under examples/. * narrowing-conversions.patch: Fixing error due to narrowing conversion (Closes: #811763). * debian/copyright: HTTP -> HTTPS * debian/compat: bump to 11 * debian/control - Removed useless dependencies on dh-autoreconf and autotools-dev - Bump Standards-Version 4.1.4 (nothing to do) * debian/libclipper-doc.doc-base: fixing file paths * debian/libclipper-doc.examples: there seems to be no examples/*.c files * debian/watch: turning on passive FTP mode * Switching to automatic debug symbols package generation Checksums-Sha1: a6634e18a6df5c086893af75c1b375c5fef18513 6184 clipper_2.1.20160809-1_arm64.buildinfo 826be8cfd680eedeffa25e5cb65a7969cdd5f710 75104 libclipper-dev_2.1.20160809-1_arm64.deb da2113728bfe8959c6433a5253bf590a7183d67f 6660524 libclipper2-dbgsym_2.1.20160809-1_arm64.ddeb daec9c21c1178f3d498cb93c215c8c62675c42c2 568812 libclipper2_2.1.20160809-1_arm64.deb Checksums-Sha256: 84170c75aee651d258e0445c2df2bad432513c13c716011408799fd71bf707a1 6184 clipper_2.1.20160809-1_arm64.buildinfo 687d52af6df63fe15917297cad9821becac8499da60d0ff2f53b71ef3aa0879b 75104 libclipper-dev_2.1.20160809-1_arm64.deb bd5b9a3488a2084119219ed901e77c947039c71bc1e175861c446f12caa371c6 6660524 libclipper2-dbgsym_2.1.20160809-1_arm64.ddeb baa473f429006cf9ed6a8ea13c9fbe5e0fcf53720349b2f1d7c12d93ec89c24e 568812 libclipper2_2.1.20160809-1_arm64.deb Files: e0a3f247a860385aa4d4bf4a812932f9 6184 science optional clipper_2.1.20160809-1_arm64.buildinfo 658a51e24289b1313475a1380087578a 75104 libdevel optional libclipper-dev_2.1.20160809-1_arm64.deb 0ebb9e2083c96d142304b734109100b2 6660524 debug optional libclipper2-dbgsym_2.1.20160809-1_arm64.ddeb ac1c22e984cb975bcc4ab6bb5f6afd91 568812 libs optional libclipper2_2.1.20160809-1_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libclipper-dev_2.1.20160809-1_arm64.deb --------------------------------------- new debian package, version 2.0. size 75104 bytes: control archive=2868 bytes. 868 bytes, 20 lines control 5918 bytes, 81 lines md5sums Package: libclipper-dev Source: clipper Version: 2.1.20160809-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 654 Depends: fftw-dev, libccp4-dev, libclipper2 (= 2.1.20160809-1), libmmdb2-dev, sfftw-dev Suggests: libclipper-doc Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented development kit for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains development environment for programs which will use the clipper libraries. drwxr-xr-x root/root 0 2018-05-03 14:24 ./ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/ccp4/ -rw-r--r-- root/root 4349 2018-05-03 14:24 ./usr/include/clipper/ccp4/ccp4_map_io.h -rw-r--r-- root/root 10870 2018-05-03 14:24 ./usr/include/clipper/ccp4/ccp4_mtz_io.h -rw-r--r-- root/root 4187 2018-05-03 14:24 ./usr/include/clipper/ccp4/ccp4_mtz_types.h -rw-r--r-- root/root 3056 2018-05-03 14:24 ./usr/include/clipper/ccp4/ccp4_utils.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/cif/ -rw-r--r-- root/root 5200 2018-05-03 14:24 ./usr/include/clipper/cif/cif_data_io.h -rw-r--r-- root/root 228 2018-05-03 14:24 ./usr/include/clipper/clipper-ccp4.h -rw-r--r-- root/root 158 2018-05-03 14:24 ./usr/include/clipper/clipper-cctbx.h -rw-r--r-- root/root 150 2018-05-03 14:24 ./usr/include/clipper/clipper-cif.h -rw-r--r-- root/root 185 2018-05-03 14:24 ./usr/include/clipper/clipper-cns.h -rw-r--r-- root/root 510 2018-05-03 14:24 ./usr/include/clipper/clipper-contrib.h -rw-r--r-- root/root 251 2018-05-03 14:24 ./usr/include/clipper/clipper-minimol.h -rw-r--r-- root/root 154 2018-05-03 14:24 ./usr/include/clipper/clipper-mmdb.h -rw-r--r-- root/root 145 2018-05-03 14:24 ./usr/include/clipper/clipper-phs.h -rw-r--r-- root/root 542 2018-05-03 14:24 ./usr/include/clipper/clipper.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/cns/ -rw-r--r-- root/root 5204 2018-05-03 14:24 ./usr/include/clipper/cns/cns_hkl_io.h -rw-r--r-- root/root 4411 2018-05-03 14:24 ./usr/include/clipper/cns/cns_map_io.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/contrib/ -rw-r--r-- root/root 4355 2018-05-03 14:24 ./usr/include/clipper/contrib/convolution_search.h -rw-r--r-- root/root 3709 2018-05-03 14:24 ./usr/include/clipper/contrib/edcalc.h -rw-r--r-- root/root 6632 2018-05-03 14:24 ./usr/include/clipper/contrib/fffear.h -rw-r--r-- root/root 12132 2018-05-03 14:24 ./usr/include/clipper/contrib/function_object_bases.h -rw-r--r-- root/root 6810 2018-05-03 14:24 ./usr/include/clipper/contrib/mapfilter.h -rw-r--r-- root/root 3261 2018-05-03 14:24 ./usr/include/clipper/contrib/originmatch.h -rw-r--r-- root/root 5217 2018-05-03 14:24 ./usr/include/clipper/contrib/sfcalc.h -rw-r--r-- root/root 3430 2018-05-03 14:24 ./usr/include/clipper/contrib/sfcalc_obs.h -rw-r--r-- root/root 4381 2018-05-03 14:24 ./usr/include/clipper/contrib/sfscale.h -rw-r--r-- root/root 6816 2018-05-03 14:24 ./usr/include/clipper/contrib/sfweight.h -rw-r--r-- root/root 4986 2018-05-03 14:24 ./usr/include/clipper/contrib/skeleton.h -rw-r--r-- root/root 2526 2018-05-03 14:24 ./usr/include/clipper/contrib/test_contrib.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/core/ -rw-r--r-- root/root 6505 2018-05-03 14:24 ./usr/include/clipper/core/atomsf.h -rw-r--r-- root/root 7219 2018-05-03 14:24 ./usr/include/clipper/core/cell.h -rw-r--r-- root/root 3257 2018-05-03 14:24 ./usr/include/clipper/core/clipper_instance.h -rw-r--r-- root/root 8170 2018-05-03 14:24 ./usr/include/clipper/core/clipper_memory.h -rw-r--r-- root/root 6252 2018-05-03 14:24 ./usr/include/clipper/core/clipper_message.h -rw-r--r-- root/root 2712 2018-05-03 14:24 ./usr/include/clipper/core/clipper_precision.h -rw-r--r-- root/root 8636 2018-05-03 14:24 ./usr/include/clipper/core/clipper_stats.h -rw-r--r-- root/root 5734 2018-05-03 14:24 ./usr/include/clipper/core/clipper_sysdep.h -rw-r--r-- root/root 2937 2018-05-03 14:24 ./usr/include/clipper/core/clipper_test.h -rw-r--r-- root/root 4993 2018-05-03 14:24 ./usr/include/clipper/core/clipper_thread.h -rw-r--r-- root/root 28429 2018-05-03 14:24 ./usr/include/clipper/core/clipper_types.h -rw-r--r-- root/root 9387 2018-05-03 14:24 ./usr/include/clipper/core/clipper_util.h -rw-r--r-- root/root 5640 2018-05-03 14:24 ./usr/include/clipper/core/container.h -rw-r--r-- root/root 6761 2018-05-03 14:24 ./usr/include/clipper/core/container_hkl.h -rw-r--r-- root/root 8922 2018-05-03 14:24 ./usr/include/clipper/core/container_map.h -rw-r--r-- root/root 5747 2018-05-03 14:24 ./usr/include/clipper/core/container_types.h -rw-r--r-- root/root 39266 2018-05-03 14:24 ./usr/include/clipper/core/coords.h -rw-r--r-- root/root 9812 2018-05-03 14:24 ./usr/include/clipper/core/derivs.h -rw-r--r-- root/root 10977 2018-05-03 14:24 ./usr/include/clipper/core/fftmap.h -rw-r--r-- root/root 6392 2018-05-03 14:24 ./usr/include/clipper/core/fftmap_sparse.h -rw-r--r-- root/root 11925 2018-05-03 14:24 ./usr/include/clipper/core/hkl_compute.h -rw-r--r-- root/root 22719 2018-05-03 14:24 ./usr/include/clipper/core/hkl_data.h -rw-r--r-- root/root 24887 2018-05-03 14:24 ./usr/include/clipper/core/hkl_datatypes.h -rw-r--r-- root/root 11570 2018-05-03 14:24 ./usr/include/clipper/core/hkl_info.h -rw-r--r-- root/root 3214 2018-05-03 14:24 ./usr/include/clipper/core/hkl_lookup.h -rw-r--r-- root/root 6048 2018-05-03 14:24 ./usr/include/clipper/core/hkl_operators.h -rw-r--r-- root/root 17423 2018-05-03 14:24 ./usr/include/clipper/core/map_interp.h -rw-r--r-- root/root 5297 2018-05-03 14:24 ./usr/include/clipper/core/map_utils.h -rw-r--r-- root/root 19689 2018-05-03 14:24 ./usr/include/clipper/core/nxmap.h -rw-r--r-- root/root 9411 2018-05-03 14:24 ./usr/include/clipper/core/nxmap_operator.h -rw-r--r-- root/root 5022 2018-05-03 14:24 ./usr/include/clipper/core/ramachandran.h -rw-r--r-- root/root 14748 2018-05-03 14:24 ./usr/include/clipper/core/resol_basisfn.h -rw-r--r-- root/root 10863 2018-05-03 14:24 ./usr/include/clipper/core/resol_fn.h -rw-r--r-- root/root 20587 2018-05-03 14:24 ./usr/include/clipper/core/resol_targetfn.h -rw-r--r-- root/root 8437 2018-05-03 14:24 ./usr/include/clipper/core/rotation.h -rw-r--r-- root/root 10516 2018-05-03 14:24 ./usr/include/clipper/core/spacegroup.h -rw-r--r-- root/root 2979 2018-05-03 14:24 ./usr/include/clipper/core/spacegroup_data.h -rw-r--r-- root/root 5869 2018-05-03 14:24 ./usr/include/clipper/core/symop.h -rw-r--r-- root/root 2503 2018-05-03 14:24 ./usr/include/clipper/core/test_core.h -rw-r--r-- root/root 3086 2018-05-03 14:24 ./usr/include/clipper/core/test_data.h -rw-r--r-- root/root 31817 2018-05-03 14:24 ./usr/include/clipper/core/xmap.h -rw-r--r-- root/root 311 2018-05-03 14:24 ./usr/include/clipper/minimal-clipper-hkl.h -rw-r--r-- root/root 265 2018-05-03 14:24 ./usr/include/clipper/minimal-clipper-map.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/minimol/ -rw-r--r-- root/root 2903 2018-05-03 14:24 ./usr/include/clipper/minimol/container_minimol.h -rw-r--r-- root/root 15387 2018-05-03 14:24 ./usr/include/clipper/minimol/minimol.h -rw-r--r-- root/root 2816 2018-05-03 14:24 ./usr/include/clipper/minimol/minimol_data.h -rw-r--r-- root/root 3534 2018-05-03 14:24 ./usr/include/clipper/minimol/minimol_io.h -rw-r--r-- root/root 4833 2018-05-03 14:24 ./usr/include/clipper/minimol/minimol_seq.h -rw-r--r-- root/root 4760 2018-05-03 14:24 ./usr/include/clipper/minimol/minimol_utils.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/mmdb/ -rw-r--r-- root/root 10259 2018-05-03 14:24 ./usr/include/clipper/mmdb/clipper_mmdb.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/include/clipper/phs/ -rw-r--r-- root/root 4073 2018-05-03 14:24 ./usr/include/clipper/phs/phs_io.h drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-ccp4.so -> libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-cif.so -> libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-cns.so -> libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-contrib.so -> libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-core.so -> libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-fortran.so -> libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-minimol.so -> libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-mmdb.so -> libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-phs.so -> libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 465 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/pkgconfig/clipper.pc drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/doc/libclipper-dev/ lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/share/doc/libclipper-dev/changelog.Debian.gz -> ../libclipper2/changelog.Debian.gz -rw-r--r-- root/root 2502 2018-05-03 14:24 ./usr/share/doc/libclipper-dev/copyright libclipper2_2.1.20160809-1_arm64.deb ------------------------------------ new debian package, version 2.0. size 568812 bytes: control archive=1272 bytes. 857 bytes, 19 lines control 995 bytes, 12 lines md5sums 276 bytes, 9 lines shlibs 74 bytes, 2 lines triggers Package: libclipper2 Source: clipper Version: 2.1.20160809-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 2483 Depends: libc6 (>= 2.17), libccp4c0, libgcc1 (>= 1:4.0), libmmdb2-0, libstdc++6 (>= 5.2), sfftw2 Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented library for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains shared libraries needed to run programs that have been developed using the clipper libraries. drwxr-xr-x root/root 0 2018-05-03 14:24 ./ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2 -> libclipper-ccp4.so.2.0.1 -rw-r--r-- root/root 232704 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-cif.so.2 -> libclipper-cif.so.2.0.1 -rw-r--r-- root/root 43672 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-cns.so.2 -> libclipper-cns.so.2.0.1 -rw-r--r-- root/root 139704 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2 -> libclipper-contrib.so.2.0.1 -rw-r--r-- root/root 542656 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-core.so.2 -> libclipper-core.so.2.0.1 -rw-r--r-- root/root 1171056 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2 -> libclipper-fortran.so.2.0.1 -rw-r--r-- root/root 26992 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2 -> libclipper-minimol.so.2.0.1 -rw-r--r-- root/root 300456 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2 -> libclipper-mmdb.so.2.0.1 -rw-r--r-- root/root 27088 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-phs.so.2 -> libclipper-phs.so.2.0.1 -rw-r--r-- root/root 26896 2018-05-03 14:24 ./usr/lib/aarch64-linux-gnu/libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/doc/libclipper2/ -rw-r--r-- root/root 981 2018-05-03 14:24 ./usr/share/doc/libclipper2/changelog.Debian.gz -rw-r--r-- root/root 2502 2018-05-03 14:24 ./usr/share/doc/libclipper2/copyright drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-05-03 14:24 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 47 2018-05-03 14:24 ./usr/share/lintian/overrides/libclipper2 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 199052 Build-Time: 243 Distribution: cosmic-proposed Host Architecture: arm64 Install-Time: 25 Job: clipper_2.1.20160809-1.dsc Machine Architecture: arm64 Package: clipper Package-Time: 270 Source-Version: 2.1.20160809-1 Space: 199052 Status: successful Version: 2.1.20160809-1 -------------------------------------------------------------------------------- Finished at 20180510-0327 Build needed 00:04:30, 199052k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-14865423 Scanning for processes to kill in build PACKAGEBUILD-14865423 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-14865423 Stopping target for build PACKAGEBUILD-14865423 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-14865423 Removing build PACKAGEBUILD-14865423