https://launchpad.net/ubuntu/+source/clipper/2.1.20160809-2/+build/15073341 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-035 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 1 Jul 17:09:46 ntpdate[1852]: adjust time server 10.211.37.1 offset 0.035123 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15073341 /home/buildd/filecache-default/b7d07d6b68ae68badf26a018a3a0291d50e41e42 Creating target for build PACKAGEBUILD-15073341 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15073341 Starting target for build PACKAGEBUILD-15073341 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15073341 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15073341 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15073341 Updating target for build PACKAGEBUILD-15073341 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 Packages [1020 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe amd64 Packages [8676 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5008 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 Packages [83.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [44.5 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 Packages [396 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [220 kB] Fetched 16.4 MB in 4s (3995 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libargon2-1 libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libquadmath0 libreadline7 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv tar tzdata util-linux 102 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 56.5 MB of archives. After this operation, 2160 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-files amd64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo6 amd64 6.1+20180210-4ubuntu1 [84.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 debianutils amd64 4.8.6 [85.6 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 bash amd64 4.4.18-2ubuntu2 [614 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdutils amd64 1:2.32-0.1ubuntu1 [60.4 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 tar amd64 1.30+dfsg-2 [240 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg amd64 1.19.0.5ubuntu3 [1140 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libext2fs2 amd64 1.44.2-1 [157 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fsprogs amd64 1.44.2-1 [390 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-bin amd64 6.1+20180210-4ubuntu1 [163 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libperl5.26 amd64 5.26.2-6 [3545 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl amd64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 perl-base amd64 5.26.2-6 [1391 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 libuuid1 amd64 2.32-0.1ubuntu1 [19.9 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 libblkid1 amd64 2.32-0.1ubuntu1 [128 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfdisk1 amd64 2.32-0.1ubuntu1 [167 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw6 amd64 6.1+20180210-4ubuntu1 [130 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libselinux1 amd64 2.8-1build1 [68.5 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmount1 amd64 2.32-0.1ubuntu1 [139 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsmartcols1 amd64 2.32-0.1ubuntu1 [86.0 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 fdisk amd64 2.32-0.1ubuntu1 [109 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 util-linux amd64 2.32-0.1ubuntu1 [916 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-passwd amd64 3.5.45 [47.4 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 libquadmath0 amd64 8.1.0-9ubuntu1 [133 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 libitm1 amd64 8.1.0-9ubuntu1 [28.0 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-8-base amd64 8.1.0-9ubuntu1 [18.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc1 amd64 1:8.1.0-9ubuntu1 [40.7 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmpx2 amd64 8.1.0-9ubuntu1 [11.7 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblsan0 amd64 8.1.0-9ubuntu1 [132 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtsan0 amd64 8.1.0-9ubuntu1 [288 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcc1-0 amd64 8.1.0-9ubuntu1 [39.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main amd64 libatomic1 amd64 8.1.0-9ubuntu1 [9060 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgomp1 amd64 8.1.0-9ubuntu1 [76.3 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++6 amd64 8.1.0-9ubuntu1 [399 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblz4-1 amd64 1.8.2-1ubuntu1 [86.1 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libudev1 amd64 238-5ubuntu2 [56.1 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libapt-pkg5.0 amd64 1.7.0~alpha1 [803 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 debconf all 1.5.67 [124 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 adduser all 3.117ubuntu1 [163 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgpg-error0 amd64 1.31-1 [56.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcrypt20 amd64 1.8.2-2ubuntu1 [417 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpgv amd64 2.2.8-1ubuntu1 [197 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 apt amd64 1.7.0~alpha1 [1172 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libapparmor1 amd64 2.12-4ubuntu6 [31.3 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcap-ng0 amd64 0.7.9-1 [11.3 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu2 [38.6 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libargon2-1 amd64 0~20171227-0.1 [20.2 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libargon2-0 amd64 0~20171227-0.1 [4532 B] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcryptsetup12 amd64 2:2.0.2-1ubuntu2 [134 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkmod2 amd64 25-1ubuntu1 [41.6 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 mount amd64 2.32-0.1ubuntu1 [104 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses6 amd64 6.1+20180210-4ubuntu1 [101 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 libprocps7 amd64 2:3.3.15-2ubuntu1 [32.6 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 procps amd64 2:3.3.15-2ubuntu1 [231 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd amd64 238-5ubuntu2 [2930 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsystemd0 amd64 238-5ubuntu2 [208 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd-sysv amd64 238-5ubuntu2 [13.7 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcom-err2 amd64 1.44.2-1 [9212 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsepol1 amd64 2.8-1 [252 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage-common all 2.8-1build1 [7000 B] Get:64 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage1 amd64 2.8-1build1 [85.3 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libss2 amd64 1.44.2-1 [11.1 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-3 [240 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libp11-kit0 amd64 0.23.12-2 [184 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtasn1-6 amd64 4.13-3 [36.1 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses5 amd64 6.1+20180210-4ubuntu1 [95.2 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw5 amd64 6.1+20180210-4ubuntu1 [117 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo5 amd64 6.1+20180210-4ubuntu1 [79.3 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 readline-common all 7.0-5 [52.2 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 libreadline7 amd64 7.0-5 [123 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 libslang2 amd64 2.3.2-1ubuntu1 [425 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsqlite3-0 amd64 3.24.0-1 [506 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 libssl1.1 amd64 1.1.0g-2ubuntu5 [1129 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main amd64 openssl amd64 1.1.0g-2ubuntu5 [531 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 tzdata all 2018e-1 [188 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-x86-64-linux-gnu amd64 2.30-22ubuntu1 [1855 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-common amd64 2.30-22ubuntu1 [193 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils amd64 2.30-22ubuntu1 [3392 B] Get:82 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbinutils amd64 2.30-22ubuntu1 [502 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main amd64 libasan4 amd64 7.3.0-24ubuntu1 [359 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main amd64 libubsan0 amd64 7.3.0-24ubuntu1 [126 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcilkrts5 amd64 7.3.0-24ubuntu1 [42.5 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++-7 amd64 7.3.0-24ubuntu1 [7572 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7 amd64 7.3.0-24ubuntu1 [7452 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++-7-dev amd64 7.3.0-24ubuntu1 [1463 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc-7-dev amd64 7.3.0-24ubuntu1 [2382 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp-7 amd64 7.3.0-24ubuntu1 [6738 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7-base amd64 7.3.0-24ubuntu1 [18.9 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp amd64 4:7.3.0-3ubuntu3 [27.5 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc amd64 4:7.3.0-3ubuntu3 [5216 B] Get:94 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++ amd64 4:7.3.0-3ubuntu3 [1592 B] Get:95 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main amd64 build-essential amd64 12.5ubuntu2 [4732 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fslibs amd64 1.44.2-1 [2700 B] Get:99 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 pinentry-curses amd64 1.1.0-1build1 [35.8 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnpth0 amd64 1.5-4 [7708 B] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpg amd64 2.2.8-1ubuntu1 [470 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpgconf amd64 2.2.8-1ubuntu1 [122 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gpg-agent amd64 2.2.8-1ubuntu1 [228 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcomerr2 amd64 1.44.2-1 [2700 B] Get:105 http://ftpmaster.internal/ubuntu cosmic/main amd64 libusb-0.1-4 amd64 2:0.1.12-32 [17.4 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 linux-libc-dev amd64 4.15.0-24.26 [998 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main amd64 pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 56.5 MB in 2s (34.6 MB/s) (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_amd64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_amd64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_amd64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_amd64.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_amd64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12646 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15073341 amd64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15073341 --arch=amd64 --dist=cosmic-proposed --nolog -A clipper_2.1.20160809-2.dsc Initiating build PACKAGEBUILD-15073341 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-035.buildd +==============================================================================+ | clipper 2.1.20160809-2 (amd64) 01 Jul 2018 17:10 | +==============================================================================+ Package: clipper Version: 2.1.20160809-2 Source Version: 2.1.20160809-2 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/clipper-jO9xUW/clipper-2.1.20160809' with '<>' I: NOTICE: Log filtering will replace 'build/clipper-jO9xUW' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15073341/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clipper_2.1.20160809-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-BU8CQM/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-BU8CQM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BU8CQM/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-BU8CQM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BU8CQM/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-BU8CQM/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-BU8CQM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12681 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, doxygen Filtered Build-Depends: debhelper (>= 11), fftw-dev, gfortran, libccp4-dev, libmmdb2-dev, sfftw-dev, doxygen dpkg-deb: building package 'sbuild-build-depends-clipper-dummy' in '/<>/resolver-6FLrMa/apt_archive/sbuild-build-depends-clipper-dummy.deb'. Ign:1 copy:/<>/resolver-6FLrMa/apt_archive ./ InRelease Get:2 copy:/<>/resolver-6FLrMa/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-6FLrMa/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-6FLrMa/apt_archive ./ Sources [256 B] Get:5 copy:/<>/resolver-6FLrMa/apt_archive ./ Packages [565 B] Fetched 2940 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clipper build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclang1-6.0 libcroco3 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libsigsegv2 libtimedate-perl libtool libxapian30 libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sfftw-dev sfftw2 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui graphviz mpi-defaults-bin gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff libhwloc-contrib-plugins pciutils libtool-doc gcj-jdk xapian-tools m4-doc apparmor less www-browser opencl-icd libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers openmpi-bin libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz fftw-dev fftw2 file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libbsd0 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclang1-6.0 libcroco3 libedit2 libelf1 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libhwloc-plugins libhwloc5 libibverbs1 libicu60 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libmmdb2-0 libmmdb2-dev libnl-3-200 libnl-route-3-200 libnuma1 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1 libsigsegv2 libtimedate-perl libtool libxapian30 libxml2 m4 man-db ocl-icd-libopencl1 po-debconf sbuild-build-depends-clipper-dummy sfftw-dev sfftw2 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 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Setting up libllvm6.0:amd64 (1:6.0.1-2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libnuma1:amd64 (2.0.11-2.2) ... Setting up libelf1:amd64 (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up libclang1-6.0:amd64 (1:6.0.1-2) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libccp4-data (6.5.1-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:amd64 (1:5.33-3) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libevent-pthreads-2.1-6:amd64 (2.1.8-stable-4build1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:amd64 (2.4.6-2.1) ... Setting up libgfortran-7-dev:amd64 (7.3.0-24ubuntu1) ... Setting up libpciaccess0:amd64 (0.14-1) ... Setting up gfortran-7 (7.3.0-24ubuntu1) ... Setting up libmmdb2-0:amd64 (2.0.5-1) ... Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.29-0ubuntu3) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up gfortran (4:7.3.0-3ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libmmdb2-dev (2.0.5-1) ... Setting up libpsm2-2 (10.3.58-1) ... Setting up libccp4c0:amd64 (6.5.1-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up doxygen (1.8.13-10) ... Setting up libccp4f0:amd64 (6.5.1-1) ... Setting up libnl-route-3-200:amd64 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up libhwloc5:amd64 (1.11.10-2) ... Setting up libhwloc-plugins:amd64 (1.11.10-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libccp4-dev:amd64 (6.5.1-1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:amd64 (19.0-1) ... Setting up po-debconf (1.0.20) ... Setting up libpmix2:amd64 (2.1.2~rc1-1) ... Setting up librdmacm1:amd64 (19.0-1) ... Setting up libfabric1 (1.6.1-5) ... Setting up libopenmpi3:amd64 (3.1.0-8) ... Setting up sfftw2 (2.1.5-4.2build1) ... Setting up sfftw-dev (2.1.5-4.2build1) ... Setting up fftw2 (2.1.5-4.2build1) ... Setting up fftw-dev (2.1.5-4.2build1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-clipper-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-22ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-24ubuntu1 gcc-7_7.3.0-24ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 linux-libc-dev_4.15.0-24.26 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-22ubuntu1 binutils-common_2.30-22ubuntu1 binutils-x86-64-linux-gnu_2.30-22ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-24ubuntu1 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 doxygen_1.8.13-10 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 fftw-dev_2.1.5-4.2build1 fftw2_2.1.5-4.2build1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-24ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-24ubuntu1 gcc-7-base_7.3.0-24ubuntu1 gcc-8-base_8.1.0-9ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gfortran_4:7.3.0-3ubuntu3 gfortran-7_7.3.0-24ubuntu1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha1 libarchive-zip-perl_1.60-1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-24ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-9ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.30-22ubuntu1 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-9ubuntu1 libccp4-data_6.5.1-1 libccp4-dev_6.5.1-1 libccp4c0_6.5.1-1 libccp4f0_6.5.1-1 libcilkrts5_7.3.0-24ubuntu1 libclang1-6.0_1:6.0.1-2 libcom-err2_1.44.2-1 libcomerr2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu2 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.2-1 libfabric1_1.6.1-5 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-24ubuntu1 libgcc1_1:8.1.0-9ubuntu1 libgcrypt20_1.8.2-2ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-24ubuntu1 libgfortran4_7.3.0-24ubuntu1 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-9ubuntu1 libgpg-error0_1.31-1 libhogweed4_3.4-1 libhwloc-plugins_1.11.10-2 libhwloc5_1.11.10-2 libibverbs1_19.0-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-9ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 libllvm6.0_1:6.0.1-2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-9ubuntu1 libltdl7_2.4.6-2.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmmdb2-0_2.0.5-1 libmmdb2-dev_2.0.5-1 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-9ubuntu1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-4 libnuma1_2.0.11-2.2 libopenmpi3_3.1.0-8 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpmix2_2.1.2~rc1-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpsm-infinipath1_3.3+20.604758e7-5 libpsm2-2_10.3.58-1 libquadmath0_8.1.0-9ubuntu1 librdmacm1_19.0-1 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.2-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-24ubuntu1 libstdc++6_8.1.0-9ubuntu1 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1 libtsan0_8.1.0-9ubuntu1 libubsan0_7.3.0-24ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libxapian30_1.4.5-1 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-24.26 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build1 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-clipper-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 sfftw-dev_2.1.5-4.2build1 sfftw2_2.1.5-4.2build1 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Jul 1 09:21:53 2018 UTC gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clipper_2.1.20160809-2.dsc dpkg-source: info: extracting clipper in clipper-2.1.20160809 dpkg-source: info: unpacking clipper_2.1.20160809.orig.tar.gz dpkg-source: info: unpacking clipper_2.1.20160809-2.debian.tar.xz dpkg-source: info: applying add-mmdb2-to-examples-LIBS.patch dpkg-source: info: applying narrowing-conversions.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15073341 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15073341 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15073341 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clipper dpkg-buildpackage: info: source version 2.1.20160809-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clipper-2.1.20160809 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_auto_clean "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -f doxy.core.tag rm -rf doc/ dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars debian/files rm -fr -- debian/libclipper-dev/ debian/tmp/ debian/libclipper2/ debian/libclipper-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/<>' debian/rules build dh build --with autoreconf --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_update_autotools_config "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/.debhelper/bucket/files cp -an --reflink=auto build-aux/config.guess debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp mv debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe.tmp debian/.debhelper/bucket/files/4676029966e14b0a9bfc430963a97196ea50451e4aa3ff23c41256b0046f6efe cp -f /usr/share/misc/config.guess ./build-aux/config.guess cp -an --reflink=auto build-aux/config.sub debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp mv debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39.tmp debian/.debhelper/bucket/files/4add30a10b137a5a4667e12868fb4783e385dbf865cfb7017b205321bd1a2f39 cp -f /usr/share/misc/config.sub ./build-aux/config.sub dh_autoreconf "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:10: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' clipper/Makefile.am: installing 'build-aux/depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mmdb --enable-minimol --enable-cif --enable-ccp4 --enable-shared --disable-static --enable-fortran checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for MMDB_CCIF_Init in -lmmdb2... yes checking mmdb2/mmdb_manager.h usability... yes checking mmdb2/mmdb_manager.h presence... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: yes make[1]: Leaving directory '/<>' rm -f debian/libclipper-dev.debhelper.log debian/libclipper-doc.debhelper.log debian/libclipper2.debhelper.log debian/rules override_dh_auto_build-indep make[1]: Entering directory '/<>' doxygen debian/Doxyfile warning: Tag `SYMBOL_CACHE_SIZE' at line 336 of file `debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1404 of file `debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1410 of file `debian/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. /<>/clipper/core/cell.h:1 warning: the name `lib/cell.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_instance.h:1 warning: the name `lib/clipper_instance.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_memory.h:1 warning: the name `lib/clipper_memory.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_message.h:1 warning: the name `lib/clipper_message.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_precision.h:1 warning: the name `lib/clipper_precision.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_stats.h:1 warning: the name `lib/clipper_stats.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_sysdep.h:1 warning: the name `lib/clipper_sysdep.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_test.h:1 warning: the name `lib/clipper_test.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_thread.h:1 warning: the name `lib/clipper_thread.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_types.h:1 warning: the name `lib/clipper_types.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_util.h:1 warning: the name `lib/clipper_util.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/container.h:1 warning: the name `lib/container.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/container_hkl.h:1 warning: the name `lib/container_hkl.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/container_map.h:1 warning: the name `lib/container_map.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/container_types.h:1 warning: the name `lib/container_types.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/coords.h:1 warning: the name `lib/coords.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/derivs.h:1 warning: the name `lib/derivs.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/fftmap.h:1 warning: the name `lib/fftmap.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/fftmap_sparse.h:1 warning: the name `lib/fftmap_sparse.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/hkl_compute.h:1 warning: the name `lib/hkl_compute.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/hkl_data.h:1 warning: the name `lib/hkl_data.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/hkl_datatypes.h:1 warning: the name `lib/hkl_datatypes.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/hkl_info.h:1 warning: the name `lib/hkl_info.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/hkl_lookup.h:1 warning: the name `lib/hkl_lookup.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/hkl_operators.h:1 warning: the name `lib/hkl_operators.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/map_interp.h:1 warning: the name `lib/map_interp.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/map_utils.h:1 warning: the name `lib/map_utils.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/nxmap.h:1 warning: the name `lib/nxmap.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/nxmap_operator.h:1 warning: the name `lib/nxmap_operator.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/resol_basisfn.h:1 warning: the name `lib/resol_basisfn.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/resol_fn.h:1 warning: the name `lib/resol_fn.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/resol_targetfn.h:1 warning: the name `lib/resol_targetfn.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/rotation.h:1 warning: the name `lib/rotation.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/spacegroup.h:1 warning: the name `lib/spacegroup.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/symop.h:1 warning: the name `lib/symop.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/test_core.h:1 warning: the name `lib/test_core.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/test_data.h:1 warning: the name `lib/test_data.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/xmap.h:1 warning: the name `lib/xmap.h' supplied as the second argument in the \file statement is not an input file /<>/clipper/core/clipper_util.cpp:165 warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b) 'template < T > static void clipper::Util::swap(T &a, T &b, T &c) /<>/clipper/core/clipper_util.cpp:166 warning: no matching class member found for template void clipper::Util::swap< ftype32 >(float &a, ftype32 &b, ftype32 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b) 'template < T > static void clipper::Util::swap(T &a, T &b, T &c) /<>/clipper/core/clipper_util.cpp:173 warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b) 'template < T > static void clipper::Util::swap(T &a, T &b, T &c) /<>/clipper/core/clipper_util.cpp:174 warning: no matching class member found for template void clipper::Util::swap< ftype64 >(double &a, ftype64 &b, ftype64 &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b) 'template < T > static void clipper::Util::swap(T &a, T &b, T &c) /<>/clipper/core/clipper_util.cpp:181 warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b) 'template < T > static void clipper::Util::swap(T &a, T &b, T &c) /<>/clipper/core/clipper_util.cpp:182 warning: no matching class member found for template void clipper::Util::swap< int >(int &a, int &b, int &c) Possible candidates: 'template < T > static void clipper::Util::swap(T &a, T &b) 'template < T > static void clipper::Util::swap(T &a, T &b, T &c) /<>/clipper/core/fftmap.cpp:425 warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype32 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< float > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const /<>/clipper/core/fftmap.cpp:427 warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype32 >(const clipper::Coord_grid &c, float &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const /<>/clipper/core/fftmap.cpp:429 warning: no matching class member found for template void clipper::FFTmap::get_recip_data< ftype64 >(const clipper::HKL &rfl, clipper::datatypes::F_phi< double > &fphi) const Possible candidates: 'template < T > void clipper::FFTmap::get_recip_data(const HKL &rfl, datatypes::F_phi< T > &fphi) const datatypes::F_phi< ffttype > clipper::FFTmap::get_recip_data(const HKL &rfl) const /<>/clipper/core/fftmap.cpp:431 warning: no matching class member found for template void clipper::FFTmap::get_real_data< ftype64 >(const clipper::Coord_grid &c, double &datum) const Possible candidates: 'template < T > void clipper::FFTmap::get_real_data(const Coord_grid &c, T &datum) const const ffttype & clipper::FFTmap::get_real_data(const Coord_grid &c) const /<>/dox/clipper_contrib.dox:1 warning: found more than one \mainpage comment block! (first occurrence: /<>/dox/clipper.dox, line 2), Skipping current block! /<>/dox/clipper_minimol.dox:1 warning: found more than one \mainpage comment block! (first occurrence: /<>/dox/clipper.dox, line 2), Skipping current block! /<>/dox/clipper_mmdb.dox:1 warning: found more than one \mainpage comment block! (first occurrence: /<>/dox/clipper.dox, line 2), Skipping current block! /<>/dox/clipper_mmdbold.dox:1 warning: found more than one \mainpage comment block! (first occurrence: /<>/dox/clipper.dox, line 2), Skipping current block! /<>/dox/develop.dox:167 warning: Illegal command width as part of a \image /<>/dox/installation.dox:18 warning: included file install.csh is not found. Check your EXAMPLE_PATH /<>/clipper/core/atomsf.cpp:586 warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const Coord_orth &xyz) const /<>/clipper/core/atomsf.cpp:631 warning: Found unknown command `\patam' /<>/clipper/core/atomsf.h:97 warning: The following parameters of clipper::AtomShapeFn::rho_grad(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad) const are not documented: parameter 'rho' /<>/clipper/core/atomsf.cpp:713 warning: Found unknown command `\patam' /<>/clipper/core/atomsf.h:99 warning: The following parameters of clipper::AtomShapeFn::rho_curv(const Coord_orth &xyz, ftype &rho, std::vector< ftype > &grad, Matrix< ftype > &curv) const are not documented: parameter 'rho' /<>/clipper/core/atomsf.cpp:615 warning: argument 'invresolsq' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /<>/clipper/core/atomsf.cpp:615 warning: argument 'The' of command @param is not found in the argument list of clipper::AtomShapeFn::rho(const ftype &rsq) const /<>/clipper/core/atomsf.h:107 warning: The following parameters of clipper::AtomShapeFn::rho(const ftype &rsq) const are not documented: parameter 'rsq' /<>/clipper/core/container_types.cpp:104 warning: argument 'rate_' of command @param is not found in the argument list of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) /<>/clipper/core/container_types.h:134 warning: The following parameters of clipper::CGrid_sampling::init(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const ftype rate) are not documented: parameter 'rate' /<>/clipper/core/container_hkl.h:67 warning: The following parameters of clipper::CHKL_info::CHKL_info(const String name="", const Spacegroup &spacegroup=NullSpacegroup, const Cell &cell=NullCell, const Resolution &resolution=NullResolution, const bool &generate=false) are not documented: parameter 'name' /<>/clipper/core/container_hkl.h:73 warning: The following parameters of clipper::CHKL_info::CHKL_info(Container &parent, const String name="", const bool &generate=false) are not documented: parameter 'generate' /<>/clipper/core/container_map.h:180 warning: argument 'grid' of command @param is not found in the argument list of clipper::CNXmap_operator< T >::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) /<>/clipper/core/container_map.h:101 warning: The following parameters of clipper::CNXmap_operator::init(const Cell &cell, const Grid_sampling &grid_sampling, const NXmap< T > &nxmap, const RTop_orth &nxop) are not documented: parameter 'grid_sampling' /<>/clipper/core/coords.h:279 warning: The following parameters of clipper::Coord_grid::deindex(const Grid &g, const int &index) are not documented: parameter 'index' /<>/clipper/core/container_map.h:126 warning: argument 'name' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /<>/clipper/core/container_map.h:126 warning: argument 'grid' of command @param is not found in the argument list of clipper::CXmap< T >::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) /<>/clipper/core/container_map.h:66 warning: The following parameters of clipper::CXmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling &grid_sampling) are not documented: parameter 'cell' parameter 'grid_sampling' /<>/clipper/core/fftmap.cpp:280 warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /<>/clipper/core/fftmap.h:171 warning: The following parameters of clipper::FFTmap::FFTmap(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) are not documented: parameter 'type' /<>/clipper/core/fftmap.cpp:296 warning: argument 'precalc' of command @param is not found in the argument list of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) /<>/clipper/core/fftmap.h:173 warning: The following parameters of clipper::FFTmap::init(const Spacegroup &spacegroup, const Cell &cell, const Grid_sampling grid_sam, const FFTtype type=Default) are not documented: parameter 'type' /<>/clipper/core/fftmap.cpp:145 warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) /<>/clipper/core/fftmap.h:104 warning: The following parameters of clipper::FFTmap_p1::fft_h_to_x(const ftype &scale) are not documented: parameter 'scale' /<>/clipper/core/fftmap.cpp:177 warning: argument 'Scale' of command @param is not found in the argument list of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) /<>/clipper/core/fftmap.h:106 warning: The following parameters of clipper::FFTmap_p1::fft_x_to_h(const ftype &scale) are not documented: parameter 'scale' /<>/clipper/core/fftmap.h:111 warning: The following parameters of clipper::FFTmap_p1::set_hkl(const HKL &hkl, const std::complex< ffttype > &f) are not documented: parameter 'f' /<>/clipper/core/fftmap_sparse.cpp:66 warning: explicit link request to 'Estimate' could not be resolved /<>/clipper/core/fftmap_sparse.cpp:125 warning: explicit link request to 'Estimate' could not be resolved /<>/clipper/core/fftmap_sparse.cpp:248 warning: explicit link request to 'Estimate' could not be resolved /<>/clipper/core/fftmap_sparse.cpp:279 warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) /<>/clipper/core/fftmap_sparse.h:143 warning: The following parameters of clipper::FFTmap_sparse_p1_xh::require_cplx_data(const Coord_grid &hkl) are not documented: parameter 'hkl' /<>/clipper/core/fftmap_sparse.cpp:284 warning: argument 'uvw' of command @param is not found in the argument list of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const /<>/clipper/core/fftmap_sparse.h:146 warning: The following parameters of clipper::FFTmap_sparse_p1_xh::cplx_data(const Coord_grid &hkl) const are not documented: parameter 'hkl' /<>/clipper/core/coords.h:703 warning: argument 'hkl' of command @param is not found in the argument list of clipper::HKL::sym_phase_shift(const Symop &op) const /<>/clipper/core/coords.h:170 warning: The following parameters of clipper::HKL::sym_phase_shift(const Symop &op) const are not documented: parameter 'op' /<>/clipper/core/hkl_data.h:507 warning: argument 'data' of command @param is not found in the argument list of clipper::HKL_data< T >::set_data(const HKL &hkl, const T &data_) /<>/clipper/core/hkl_data.h:297 warning: The following parameters of clipper::HKL_data::set_data(const HKL &hkl, const T &data_) are not documented: parameter 'data_' /<>/clipper/core/hkl_info.h:68 warning: The following parameters of clipper::HKL_info::HKL_info(const Spacegroup &spacegroup, const Cell &cell, const Resolution &resolution, const bool &generate=false) are not documented: parameter 'generate' /<>/clipper/core/map_interp.h:112 warning: The following parameters of clipper::Interp_cubic::interp(const M &map, const Coord_map &pos, T &val) are not documented: parameter 'map' parameter 'val' /<>/clipper/core/map_interp.h:113 warning: The following parameters of clipper::Interp_cubic::interp_grad(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad) are not documented: parameter 'map' /<>/clipper/core/map_interp.h:114 warning: The following parameters of clipper::Interp_cubic::interp_curv(const M &map, const Coord_map &pos, T &val, Grad_map< T > &grad, Curv_map< T > &curv) are not documented: parameter 'map' parameter 'curv' /<>/clipper/core/map_interp.h:91 warning: The following parameters of clipper::Interp_linear::interp(const M &map, const Coord_map &pos, T &val) are not documented: parameter 'val' /<>/clipper/core/map_interp.h:70 warning: The following parameters of clipper::Interp_nearest::interp(const M &map, const Coord_map &pos, T &val) are not documented: parameter 'val' /<>/clipper/core/map_utils.cpp:55 warning: Found unknown command `\params' /<>/clipper/core/map_utils.cpp:56 warning: Found unknown command `\params' /<>/clipper/core/map_utils.cpp:64 warning: Found unknown command `\params' /<>/clipper/core/map_utils.cpp:65 warning: Found unknown command `\params' /<>/clipper/core/map_utils.h:113 warning: Found unknown command `\params' /<>/clipper/core/nxmap.h:384 warning: argument 'curv' of command @param is not found in the argument list of clipper::NXmap< T >::interp_grad(const Coord_map &pos, T &val, Grad_map< T > &grad) const /<>/clipper/core/resol_fn.cpp:141 warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /<>/clipper/core/resol_fn.h:190 warning: The following parameters of clipper::ResolutionFn::ResolutionFn(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'damp' parameter 'debug' /<>/clipper/core/resol_fn.cpp:200 warning: argument 'damp_' of command @param is not found in the argument list of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) /<>/clipper/core/resol_fn.h:238 warning: The following parameters of clipper::ResolutionFn_nonlinear::ResolutionFn_nonlinear(const HKL_info &hkl_info, const BasisFn_base &basisfn, const TargetFn_base &targetfn, const std::vector< ftype > ¶ms, const ftype damp=0.0, const bool debug=false) are not documented: parameter 'params' parameter 'damp' parameter 'debug' /<>/clipper/core/spacegroup.cpp:462 warning: argument 'name' of command @param is not found in the argument list of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) /<>/clipper/core/spacegroup.h:80 warning: The following parameters of clipper::Spgr_descr::Spgr_descr(const String &symb, TYPE type=Unknown) are not documented: parameter 'symb' /<>/clipper/core/symop.cpp:118 warning: argument 'mat' of command @param is not found in the argument list of clipper::Symop::Symop(const RTop<> &rt) /<>/clipper/core/symop.h:98 warning: The following parameters of clipper::Symop::Symop(const RTop<> &rt) are not documented: parameter 'rt' /<>/clipper/core/symop.cpp:215 warning: argument 'code' of command @param is not found in the argument list of clipper::Symop_code::symop() const /<>/clipper/core/symop.cpp:231 warning: argument 'code' of command @param is not found in the argument list of clipper::Symop_code::isymop() const /<>/clipper/core/resol_targetfn.h:86 warning: Found unknown command `\Note' /<>/clipper/core/resol_targetfn.h:62 warning: Found unknown command `\Note' /<>/clipper/core/coords.cpp:626 warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_frac::transform(const RTop_frac &op) const /<>/clipper/core/coords.h:469 warning: The following parameters of clipper::U_aniso_frac::transform(const RTop_frac &op) const are not documented: parameter 'op' /<>/clipper/core/coords.cpp:614 warning: argument 'u' of command @param is not found in the argument list of clipper::U_aniso_orth::transform(const RTop_orth &op) const /<>/clipper/core/coords.h:445 warning: The following parameters of clipper::U_aniso_orth::transform(const RTop_orth &op) const are not documented: parameter 'op' /<>/clipper/core/xmap.h:403 warning: The following parameters of clipper::Xmap::fft_from(const H &fphidata, const FFTtype type=Default) are not documented: parameter 'type' /<>/clipper/core/xmap.h:405 warning: The following parameters of clipper::Xmap::fft_to(H &fphidata, const FFTtype type=Default) const are not documented: parameter 'type' sh: 1: latex: not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! sh: 1: dvips: not found error: Problems running dvips. Check your installation! make[1]: Leaving directory '/<>' dh_auto_build "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" -Nlibclipper-doc make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in clipper make[3]: Entering directory '/<>/clipper' Making all in core make[4]: Entering directory '/<>/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-coords.lo `test -f 'coords.cpp' || echo './'`coords.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-nxmap_operator.lo `test -f 'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-cell.lo `test -f 'cell.cpp' || echo './'`cell.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c cell.cpp -fPIC -DPIC -o .libs/libclipper_core_la-cell.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c coords.cpp -fPIC -DPIC -o .libs/libclipper_core_la-coords.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c atomsf.cpp -fPIC -DPIC -o .libs/libclipper_core_la-atomsf.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-derivs.lo `test -f 'derivs.cpp' || echo './'`derivs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c derivs.cpp -fPIC -DPIC -o .libs/libclipper_core_la-derivs.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-ramachandran.lo `test -f 'ramachandran.cpp' || echo './'`ramachandran.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c ramachandran.cpp -fPIC -DPIC -o .libs/libclipper_core_la-ramachandran.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_instance.lo `test -f 'clipper_instance.cpp' || echo './'`clipper_instance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_instance.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_instance.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap.lo `test -f 'fftmap.cpp' || echo './'`fftmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_basisfn.lo `test -f 'resol_basisfn.cpp' || echo './'`resol_basisfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_basisfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_basisfn.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_memory.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_memory.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-fftmap_sparse.lo `test -f 'fftmap_sparse.cpp' || echo './'`fftmap_sparse.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fftmap_sparse.cpp -fPIC -DPIC -o .libs/libclipper_core_la-fftmap_sparse.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_fn.lo `test -f 'resol_fn.cpp' || echo './'`resol_fn.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-clipper_message.lo `test -f 'clipper_message.cpp' || echo './'`clipper_message.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_fn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_fn.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c clipper_message.cpp -fPIC -DPIC -o .libs/libclipper_core_la-clipper_message.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-hkl_compute.lo `test -f 'hkl_compute.cpp' || echo './'`hkl_compute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c hkl_compute.cpp -fPIC -DPIC -o .libs/libclipper_core_la-hkl_compute.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o libclipper_core_la-resol_targetfn.lo `test -f 'resol_targetfn.cpp' || echo './'`resol_targetfn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c resol_targetfn.cpp -fPIC -DPIC -o .libs/libclipper_core_la-resol_targetfn.o /bin/bash ../../libtool --tag=CXX --mode=compile g++ 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warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’: cns/cns_map_io.cpp:202:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:205:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:212:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:223:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:235:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:252:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’: cns/cns_map_io.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:338:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:341:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:352:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:364:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:372:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:381:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’: cns/cns_map_io.cpp:497:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // could be blank line first ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:504:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:507:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:518:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:536:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:544:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; // read slice number line ~~~~~^~~~~~~~~~~ cns/cns_map_io.cpp:553:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf,512,f);; ~~~~~^~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o fortran/f_interface.lo fortran/f_interface.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c fortran/f_interface.cpp -fPIC -DPIC -o fortran/.libs/f_interface.o /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/x86_64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so.2" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so.2") libtool: link: (cd "mmdb/.libs" && rm -f "libclipper-mmdb.so" && ln -s "libclipper-mmdb.so.2.0.1" "libclipper-mmdb.so") libtool: link: ( cd "mmdb/.libs" && rm -f "libclipper-mmdb.la" && ln -s "../libclipper-mmdb.la" "libclipper-mmdb.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/x86_64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so.2" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so.2") libtool: link: (cd "phs/.libs" && rm -f "libclipper-phs.so" && ln -s "libclipper-phs.so.2.0.1" "libclipper-phs.so") libtool: link: ( cd "phs/.libs" && rm -f "libclipper-phs.la" && ln -s "../libclipper-phs.la" "libclipper-phs.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/x86_64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/x86_64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o fortran/.libs/f_interface.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/contrib/.libs core/.libs/libclipper-core.so contrib/.libs/libclipper-contrib.so -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so.2" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so.2") libtool: link: (cd "fortran/.libs" && rm -f "libclipper-fortran.so" && ln -s "libclipper-fortran.so.2.0.1" "libclipper-fortran.so") libtool: link: ( cd "fortran/.libs" && rm -f "libclipper-fortran.la" && ln -s "../libclipper-fortran.la" "libclipper-fortran.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/x86_64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/<>/clipper/core/.libs -Wl,-rpath -Wl,/<>/clipper/mmdb/.libs core/.libs/libclipper-core.so mmdb/.libs/libclipper-mmdb.so -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so.2" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so.2") libtool: link: (cd "minimol/.libs" && rm -f "libclipper-minimol.so" && ln -s "libclipper-minimol.so.2.0.1" "libclipper-minimol.so") libtool: link: ( cd "minimol/.libs" && rm -f "libclipper-minimol.la" && ln -s "../libclipper-minimol.la" "libclipper-minimol.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/x86_64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/<>/clipper/core/.libs core/.libs/libclipper-core.so -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath 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ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' Making all in examples make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/examples' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in clipper make[2]: Entering directory '/<>/clipper' Making check in core make[3]: Entering directory '/<>/clipper/core' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/clipper/core' Making check in contrib make[3]: Entering directory '/<>/clipper/contrib' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/clipper/contrib' make[3]: Entering directory '/<>/clipper' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/clipper' make[2]: Leaving directory '/<>/clipper' Making check in examples make[2]: Entering directory '/<>/examples' make rfltest sgtest symtest ccad diffmap maptest mtztest cmaplocal ffttest sktest cnstest cns2mtz maketestdata sftest phstest ciftophs ftndemo make[3]: Entering directory '/<>/examples' g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o rfltest.o rfltest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. 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-fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o mtztest.o mtztest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cmaplocal.o cmaplocal.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o ffttest.o ffttest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o sktest.o sktest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -c -o cnstest.o cnstest.cpp g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. 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-Wl,-Bsymbolic-functions -Wl,-z,relro -o phstest phstest.o ../clipper/phs/libclipper-phs.la ../clipper/ccp4/libclipper-ccp4.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/maketestdata maketestdata.o ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ciftophs ciftophs.o ../clipper/phs/libclipper-phs.la ../clipper/cif/libclipper-cif.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/phstest phstest.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ciftophs ciftophs.o ../clipper/phs/.libs/libclipper-phs.so ../clipper/cif/.libs/libclipper-cif.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ftndemo ftndemo.o ../clipper/fortran/libclipper-fortran.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgfortran -lm -lquadmath -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o sftest sftest.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/contrib/libclipper-contrib.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/ftndemo ftndemo.o ../clipper/fortran/.libs/libclipper-fortran.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgfortran -lm -lquadmath -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/sftest sftest.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/contrib/.libs/libclipper-contrib.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns2mtz cns2mtz.o ../clipper/ccp4/libclipper-ccp4.la ../clipper/mmdb/libclipper-mmdb.la ../clipper/core/libclipper-core.la -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 libtool: link: g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/cns2mtz cns2mtz.o ../clipper/ccp4/.libs/libclipper-ccp4.so ../clipper/mmdb/.libs/libclipper-mmdb.so ../clipper/core/.libs/libclipper-core.so -lsrfftw -lsfftw -L/usr/lib/x86_64-linux-gnu -lmmdb2 make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with autoreconf --ddeb-migration='libclipper2-dbg (<< 2.1.20160809-1~)' dh_testroot "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_prep "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f -- debian/libclipper-dev.substvars debian/libclipper2.substvars debian/libclipper-doc.substvars rm -fr -- debian/.debhelper/generated/libclipper-dev/ debian/libclipper-dev/ debian/tmp/ debian/.debhelper/generated/libclipper2/ debian/libclipper2/ debian/.debhelper/generated/libclipper-doc/ debian/libclipper-doc/ dh_auto_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d /<>/debian/tmp make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in clipper make[2]: Entering directory '/<>/clipper' Making install in core make[3]: Entering directory '/<>/clipper/core' make[4]: Entering directory '/<>/clipper/core' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/<>/debian/tmp/usr/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/<>/debian/tmp/usr/include/clipper/core' make[4]: Leaving directory '/<>/clipper/core' make[3]: Leaving directory '/<>/clipper/core' Making install in contrib make[3]: Entering directory '/<>/clipper/contrib' make[4]: Entering directory '/<>/clipper/contrib' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /<>/clipper/contrib; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libclipper-contrib.la -rpath /usr/lib/x86_64-linux-gnu convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/<>/debian/tmp/usr/include/clipper/contrib' make[4]: Leaving directory '/<>/clipper/contrib' make[3]: Leaving directory '/<>/clipper/contrib' make[3]: Entering directory '/<>/clipper' make[4]: Entering directory '/<>/clipper' /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la fortran/libclipper-fortran.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o mmdb/libclipper-mmdb.la -rpath /usr/lib/x86_64-linux-gnu mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o mmdb/.libs/clipper_mmdb.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o minimol/libclipper-minimol.la -rpath /usr/lib/x86_64-linux-gnu minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lclipper-mmdb -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o phs/libclipper-phs.la -rpath /usr/lib/x86_64-linux-gnu phs/phs_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o phs/.libs/phs_io.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cif/libclipper-cif.la -rpath /usr/lib/x86_64-linux-gnu cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o cif/.libs/cif_data_io.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lmmdb2 -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o ccp4/libclipper-ccp4.la -rpath /usr/lib/x86_64-linux-gnu ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lccp4c -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o cns/libclipper-cns.la -rpath /usr/lib/x86_64-linux-gnu cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.la libtool: warning: relinking 'fortran/libclipper-fortran.la' libtool: install: (cd /<>/clipper; /bin/bash "/<>/libtool" --tag CXX --mode=relink g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu++98 -version-info 2:1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fortran/libclipper-fortran.la -rpath /usr/lib/x86_64-linux-gnu fortran/f_interface.lo core/libclipper-core.la contrib/libclipper-contrib.la -lm -inst-prefix-dir /<>/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/7/crtbeginS.o fortran/.libs/f_interface.o -L/<>/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lclipper-core -lclipper-contrib -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/7/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-soname -Wl,libclipper-fortran.so.2 -o fortran/.libs/libclipper-fortran.so.2.0.1 libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.so.2.0.1T /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so.2 || { rm -f libclipper-fortran.so.2 && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so.2; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libclipper-fortran.so.2.0.1 libclipper-fortran.so || { rm -f libclipper-fortran.so && ln -s libclipper-fortran.so.2.0.1 libclipper-fortran.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libclipper-fortran.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.la libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/<>/debian/tmp/usr/include/clipper/ccp4' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/<>/debian/tmp/usr/include/clipper/cif' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/<>/debian/tmp/usr/include/clipper/cns' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/<>/debian/tmp/usr/include/clipper/minimol' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/<>/debian/tmp/usr/include/clipper/mmdb' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/<>/debian/tmp/usr/include/clipper/phs' /bin/mkdir -p '/<>/debian/tmp/usr/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/<>/debian/tmp/usr/include/clipper' make[4]: Leaving directory '/<>/clipper' make[3]: Leaving directory '/<>/clipper' make[2]: Leaving directory '/<>/clipper' Making install in examples make[2]: Entering directory '/<>/examples' make[3]: Entering directory '/<>/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/examples' make[2]: Leaving directory '/<>/examples' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper-dev//usr/include cp --reflink=auto -a debian/tmp/usr/include/clipper debian/libclipper-dev//usr/include/ install -d debian/libclipper-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig debian/libclipper-dev//usr/lib/x86_64-linux-gnu/ install -d debian/.debhelper/generated/libclipper-dev install -d debian/libclipper2//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 debian/tmp/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2//usr/lib/x86_64-linux-gnu/ install -d debian/.debhelper/generated/libclipper2 install -d debian/.debhelper/generated/libclipper-doc dh_installdocs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper-dev/usr/share/doc/libclipper-dev install -p -m0644 debian/copyright debian/libclipper-dev/usr/share/doc/libclipper-dev/copyright install -d debian/libclipper2/usr/share/doc/libclipper2 install -p -m0644 debian/copyright debian/libclipper2/usr/share/doc/libclipper2/copyright install -d debian/libclipper-doc/usr/share/doc/libclipper-doc install -d debian/libclipper-doc/usr/share/doc/libclipper-dev cp --reflink=auto -a ./debian/index.html debian/libclipper-doc/usr/share/doc/libclipper-dev cd './doc/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/libclipper-doc/usr/share/doc/libclipper-dev chown -R 0:0 debian/libclipper-doc/usr/share/doc chmod -R u\+rw,go=rX debian/libclipper-doc/usr/share/doc install -p -m0644 debian/copyright debian/libclipper-doc/usr/share/doc/libclipper-doc/copyright install -d debian/libclipper-doc/usr/share/doc-base/ install -p -m0644 debian/libclipper-doc.doc-base debian/libclipper-doc/usr/share/doc-base/clipper dh_installchangelogs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -p -m0644 debian/changelog debian/libclipper2/usr/share/doc/libclipper2/changelog.Debian install -p -m0644 debian/changelog debian/libclipper-doc/usr/share/doc/libclipper-doc/changelog.Debian install -p -m0644 debian/changelog debian/libclipper-dev/usr/share/doc/libclipper-dev/changelog.Debian dh_installexamples "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/c2test.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ccad.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cctbxtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ciftophs.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cmaplocal.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cnstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/diffmap.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ffttest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/fomvar.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/ftndemo_lib.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maketestdata.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maphist.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/maptest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/memtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mmtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzcut.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtziotest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtzmissing.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/mtztest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/octest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/phstest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/reftest2.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/rfltest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sftest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sgtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/sktest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/symtest.cpp debian/libclipper-doc/usr/share/doc/libclipper-dev/examples cp --reflink=auto -a ./examples/cns2mtz.h debian/libclipper-doc/usr/share/doc/libclipper-dev/examples dh_lintian "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper2/usr/share/lintian/overrides install -p -m0644 debian/libclipper2.lintian-overrides debian/libclipper2/usr/share/lintian/overrides/libclipper2 dh_perl "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_link "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-fortran.so ln -s libclipper-fortran.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-fortran.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so ln -s libclipper-ccp4.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cns.so ln -s libclipper-cns.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cns.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-core.so ln -s libclipper-core.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-core.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cif.so ln -s libclipper-cif.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-cif.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-phs.so ln -s libclipper-phs.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-phs.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-minimol.so ln -s libclipper-minimol.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-minimol.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so ln -s libclipper-mmdb.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so rm -f debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-contrib.so ln -s libclipper-contrib.so.2.0.1 debian/libclipper-dev/usr/lib/x86_64-linux-gnu/libclipper-contrib.so rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 ln -s libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2 ln -s libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 ln -s libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 ln -s libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 ln -s libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 ln -s libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 ln -s libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 ln -s libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 rm -f debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 ln -s libclipper-mmdb.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 dh_strip_nondeterminism "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" Using 1530435670 as canonical time Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Datatype__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__orth.png using File::StripNondeterminism::handlers::png Normalizing 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File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1datatypes_1_1Flag.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1RTop__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__reci__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__generic.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing 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using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__info_1_1HKL__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleLogF1F2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__index.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing 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File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CSpacegroup.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CResolution.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NXmap.png using 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File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Coord__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__dtor.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid.png using File::StripNondeterminism::handlers::png Normalizing 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debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hierarchy.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/folderopen.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Mat33.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1U__aniso__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Message__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanFnth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__core.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Property.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grad__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomShapeFn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Spgr__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__orth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1AtomSF.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Isymop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Matrix.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__sampling.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CHKL__data.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__aniso__gaussian.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Symop.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Cell__descr.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1ResolutionFn__nonlinear.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1NX__operator.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__meanEnth.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Grid__range.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Generic__ordinal.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__scaleEsq.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Test__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CCell.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__map.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Xmap__base_1_1Map__reference__base.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/map_p2.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Curv__frac.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/hkl_objs.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1FFTmap__sparse__p1__hx.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1TargetFn__sigmaa__omegaa.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/bdwn.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1HKL__data__cacheobj.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Array2d.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1CXmap.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1Resolution.png using File::StripNondeterminism::handlers::png Normalizing debian/libclipper-doc/usr/share/doc/libclipper-dev/html/classclipper_1_1BasisFn__log__gaussian.png using File::StripNondeterminism::handlers::png dh_compress "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" cd debian/libclipper-dev cd debian/libclipper2 cd debian/libclipper-doc chmod a-x usr/share/doc/libclipper-dev/changelog.Debian chmod a-x usr/share/doc/libclipper2/changelog.Debian gzip -9nf usr/share/doc/libclipper2/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/changelog.Debian cd '/<>' cd '/<>' chmod a-x usr/share/doc/libclipper-dev/examples/ccad.cpp usr/share/doc/libclipper-dev/examples/cctbxtest.cpp usr/share/doc/libclipper-dev/examples/cns2mtz.cpp usr/share/doc/libclipper-dev/examples/cns2mtz.h usr/share/doc/libclipper-dev/examples/ffttest.cpp usr/share/doc/libclipper-dev/examples/maketestdata.cpp usr/share/doc/libclipper-dev/examples/memtest.cpp usr/share/doc/libclipper-dev/examples/mmtest.cpp usr/share/doc/libclipper-dev/examples/mtztest.cpp usr/share/doc/libclipper-dev/examples/octest.cpp usr/share/doc/libclipper-dev/examples/reftest.cpp usr/share/doc/libclipper-dev/examples/reftest2.cpp usr/share/doc/libclipper-dev/examples/rfltest.cpp usr/share/doc/libclipper-dev/examples/sftest.cpp usr/share/doc/libclipper-dev/examples/sgtest.cpp usr/share/doc/libclipper-dev/examples/sktest.cpp usr/share/doc/libclipper-dev/examples/symtest.cpp usr/share/doc/libclipper-doc/changelog.Debian gzip -9nf usr/share/doc/libclipper-dev/examples/ccad.cpp usr/share/doc/libclipper-dev/examples/cctbxtest.cpp usr/share/doc/libclipper-dev/examples/cns2mtz.cpp usr/share/doc/libclipper-dev/examples/cns2mtz.h usr/share/doc/libclipper-dev/examples/ffttest.cpp usr/share/doc/libclipper-dev/examples/maketestdata.cpp usr/share/doc/libclipper-dev/examples/memtest.cpp usr/share/doc/libclipper-dev/examples/mmtest.cpp usr/share/doc/libclipper-dev/examples/mtztest.cpp usr/share/doc/libclipper-dev/examples/octest.cpp usr/share/doc/libclipper-dev/examples/reftest.cpp usr/share/doc/libclipper-dev/examples/reftest2.cpp usr/share/doc/libclipper-dev/examples/rfltest.cpp usr/share/doc/libclipper-dev/examples/sftest.cpp usr/share/doc/libclipper-dev/examples/sgtest.cpp usr/share/doc/libclipper-dev/examples/sktest.cpp usr/share/doc/libclipper-dev/examples/symtest.cpp usr/share/doc/libclipper-doc/changelog.Debian cd '/<>' dh_fixperms "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" find debian/libclipper-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libclipper2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libclipper-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libclipper-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libclipper-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libclipper-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libclipper-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dh_strip "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/96/9be5bb260167f5b4c6841acf08ab068d9174e9.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/96/9be5bb260167f5b4c6841acf08ab068d9174e9.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/96/9be5bb260167f5b4c6841acf08ab068d9174e9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/96/9be5bb260167f5b4c6841acf08ab068d9174e9.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b9/68acd37799583c175191c90094113465534960.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b9/68acd37799583c175191c90094113465534960.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b9/68acd37799583c175191c90094113465534960.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/b9/68acd37799583c175191c90094113465534960.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/56/3d1b55f2d48c1411db65c75b0f1ed212afe965.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/56/3d1b55f2d48c1411db65c75b0f1ed212afe965.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/56/3d1b55f2d48c1411db65c75b0f1ed212afe965.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/56/3d1b55f2d48c1411db65c75b0f1ed212afe965.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55/ae17a77bbce8b0fe495163fd95aa1202d05d9e.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55/ae17a77bbce8b0fe495163fd95aa1202d05d9e.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55/ae17a77bbce8b0fe495163fd95aa1202d05d9e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/55/ae17a77bbce8b0fe495163fd95aa1202d05d9e.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ff/d6924031ea39d18f5209c2b09bb7364cd21ddc.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ff/d6924031ea39d18f5209c2b09bb7364cd21ddc.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ff/d6924031ea39d18f5209c2b09bb7364cd21ddc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/ff/d6924031ea39d18f5209c2b09bb7364cd21ddc.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/06/f2a49f4cc7e995b5b848878fa40278ce35dab1.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/06/f2a49f4cc7e995b5b848878fa40278ce35dab1.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/06/f2a49f4cc7e995b5b848878fa40278ce35dab1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/06/f2a49f4cc7e995b5b848878fa40278ce35dab1.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0b objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0b/c38616b623c49498c4ab159d610af08470bd16.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0b/c38616b623c49498c4ab159d610af08470bd16.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0b/c38616b623c49498c4ab159d610af08470bd16.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/0b/c38616b623c49498c4ab159d610af08470bd16.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/39/a5543b934f893f501f82f99e856e319d8ce4cd.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/39/a5543b934f893f501f82f99e856e319d8ce4cd.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/39/a5543b934f893f501f82f99e856e319d8ce4cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/39/a5543b934f893f501f82f99e856e319d8ce4cd.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c4/b5ad5e0da82a72fa9e1e39abbbe650a1a35158.debug chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c4/b5ad5e0da82a72fa9e1e39abbbe650a1a35158.debug chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c4/b5ad5e0da82a72fa9e1e39abbbe650a1a35158.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libclipper2/dbgsym-root/usr/lib/debug/.build-id/c4/b5ad5e0da82a72fa9e1e39abbbe650a1a35158.debug debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 install -d debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc ln -s libclipper2 debian/.debhelper/libclipper2/dbgsym-root/usr/share/doc/libclipper2-dbgsym dh_makeshlibs "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" rm -f debian/libclipper-dev/DEBIAN/shlibs rm -f debian/libclipper2/DEBIAN/shlibs install -d debian/libclipper2/DEBIAN echo "libclipper-ccp4 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cif 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-cns 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-contrib 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-core 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-fortran 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-minimol 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-mmdb 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs echo "libclipper-phs 2 libclipper2" >> debian/libclipper2/DEBIAN/shlibs chmod 0644 -- debian/libclipper2/DEBIAN/shlibs chown 0:0 -- debian/libclipper2/DEBIAN/shlibs mv debian/.debhelper/generated/libclipper2/triggers.new debian/.debhelper/generated/libclipper2/triggers rm -f debian/libclipper-doc/DEBIAN/shlibs dh_shlibdeps "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-shlibdeps -Tdebian/libclipper2.substvars debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 debian/libclipper2/usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 dh_installdeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" install -d debian/libclipper-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libclipper2/triggers debian/libclipper2/DEBIAN/triggers install -d debian/libclipper-doc/DEBIAN dh_gencontrol "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" echo misc:Depends= >> debian/libclipper-dev.substvars echo misc:Pre-Depends= >> debian/libclipper-dev.substvars dpkg-gencontrol -plibclipper-dev -ldebian/changelog -Tdebian/libclipper-dev.substvars -Pdebian/libclipper-dev echo misc:Depends= >> debian/libclipper-doc.substvars echo misc:Pre-Depends= >> debian/libclipper-doc.substvars dpkg-gencontrol -plibclipper-doc -ldebian/changelog -Tdebian/libclipper-doc.substvars -Pdebian/libclipper-doc echo misc:Depends= >> debian/libclipper2.substvars echo misc:Pre-Depends= >> debian/libclipper2.substvars install -d debian/.debhelper/libclipper2/dbgsym-root/DEBIAN dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/.debhelper/libclipper2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libclipper2-dbgsym "-DDepends=libclipper2 (= \${binary:Version})" "-DDescription=debug symbols for libclipper2" "-DBuild-Ids=06f2a49f4cc7e995b5b848878fa40278ce35dab1 0bc38616b623c49498c4ab159d610af08470bd16 39a5543b934f893f501f82f99e856e319d8ce4cd 55ae17a77bbce8b0fe495163fd95aa1202d05d9e 563d1b55f2d48c1411db65c75b0f1ed212afe965 969be5bb260167f5b4c6841acf08ab068d9174e9 b968acd37799583c175191c90094113465534960 c4b5ad5e0da82a72fa9e1e39abbbe650a1a35158 ffd6924031ea39d18f5209c2b09bb7364cd21ddc" -DSection=debug -DPackage-Type=ddeb "-DReplaces=libclipper2-dbg (<< 2.1.20160809-1~)" "-DBreaks=libclipper2-dbg (<< 2.1.20160809-1~)" chmod 0644 -- debian/libclipper-dev/DEBIAN/control chown 0:0 -- debian/libclipper-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibclipper2 -ldebian/changelog -Tdebian/libclipper2.substvars -Pdebian/libclipper2 chmod 0644 -- debian/libclipper-doc/DEBIAN/control chown 0:0 -- debian/libclipper-doc/DEBIAN/control chmod 0644 -- debian/libclipper2/DEBIAN/control chown 0:0 -- debian/libclipper2/DEBIAN/control dh_md5sums "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" (cd debian/libclipper2 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libclipper-doc >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null (cd debian/libclipper-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libclipper-dev/DEBIAN/md5sums chown 0:0 -- debian/libclipper-dev/DEBIAN/md5sums chmod 0644 -- debian/libclipper2/DEBIAN/md5sums chown 0:0 -- debian/libclipper2/DEBIAN/md5sums (cd debian/.debhelper/libclipper2/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libclipper-doc/DEBIAN/md5sums chown 0:0 -- debian/libclipper-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/md5sums dh_builddeb "-O--ddeb-migration=libclipper2-dbg (<< 2.1.20160809-1~)" dpkg-deb --build debian/libclipper-dev .. dpkg-deb --build debian/libclipper2 .. dpkg-deb --build debian/libclipper-doc .. install -d debian/.debhelper/scratch-space/build-libclipper2 dpkg-deb --build debian/.debhelper/libclipper2/dbgsym-root debian/.debhelper/scratch-space/build-libclipper2 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 pkgstriptranslations: processing libclipper-doc (in debian/libclipper-doc); do_strip: , oemstrip: pkgstriptranslations: processing libclipper-dev (in debian/libclipper-dev); do_strip: , oemstrip: pkgstriptranslations: processing libclipper2-dbgsym (in debian/.debhelper/libclipper2/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libclipper2 (in debian/libclipper2); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libclipper-doc/DEBIAN/control, package libclipper-doc, directory debian/libclipper-doc INFO: pkgstripfiles: waiting for lock (libclipper-doc) ... pkgstripfiles: processing control file: debian/libclipper2/DEBIAN/control, package libclipper2, directory debian/libclipper2 INFO: pkgstripfiles: waiting for lock (libclipper2) ... pkgstripfiles: processing control file: debian/.debhelper/libclipper2/dbgsym-root/DEBIAN/control, package libclipper2-dbgsym, directory debian/.debhelper/libclipper2/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2-dbgsym' in 'debian/.debhelper/scratch-space/build-libclipper2/libclipper2-dbgsym_2.1.20160809-2_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libclipper-doc) ... INFO: pkgstripfiles: waiting for lock (libclipper2) ... INFO: pkgstripfiles: waiting for lock (libclipper-doc) ... INFO: pkgstripfiles: waiting for lock (libclipper2) ... INFO: pkgstripfiles: waiting for lock (libclipper-doc) ... INFO: pkgstripfiles: waiting for lock (libclipper2) ... Renaming libclipper2-dbgsym_2.1.20160809-2_amd64.deb to libclipper2-dbgsym_2.1.20160809-2_amd64.ddeb mv debian/.debhelper/scratch-space/build-libclipper2/libclipper2-dbgsym_2.1.20160809-2_amd64.deb ../libclipper2-dbgsym_2.1.20160809-2_amd64.ddeb INFO: pkgstripfiles: waiting for lock (libclipper-doc) ... INFO: pkgstripfiles: waiting for lock (libclipper2) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libclipper-dev/DEBIAN/control, package libclipper-dev, directory debian/libclipper-dev Searching for duplicated docs in dependency libclipper2... symlinking changelog.Debian.gz in libclipper-dev to file in libclipper2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper-dev' in '../libclipper-dev_2.1.20160809-2_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libclipper-doc) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclipper2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclipper2' in '../libclipper2_2.1.20160809-2_amd64.deb'. pkgstripfiles: Disabled PNG optimization for -doc package libclipper-doc (to save build time) dpkg-deb: building package 'libclipper-doc' in '../libclipper-doc_2.1.20160809-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../clipper_2.1.20160809-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build clipper-2.1.20160809 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180701-1712 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clipper_2.1.20160809-2_amd64.changes: ------------------------------------- Format: 1.8 Date: Sun, 01 Jul 2018 05:01:10 -0400 Source: clipper Binary: libclipper-dev libclipper2 libclipper-doc Architecture: amd64 all Version: 2.1.20160809-2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: libclipper-dev - object oriented development kit for crystallographic computing libclipper-doc - doxygen generated documentation for libclipper libclipper2 - object oriented library for crystallographic computing Closes: 902745 Changes: clipper (2.1.20160809-2) unstable; urgency=medium . * Ceasing to ship non-reproducible Makefile with hard-coded paths thanks Chris Lamb for the patch (Closes: #902745) Checksums-Sha1: 084f74cb36eeeacb0b62f130b8453e59c60d355f 6928 clipper_2.1.20160809-2_amd64.buildinfo e229ec704286229b2627f2f74d2afb7ca2661551 75132 libclipper-dev_2.1.20160809-2_amd64.deb 242e6a693bc2d1e1426714710b2de6e46956f817 662824 libclipper-doc_2.1.20160809-2_all.deb 3442537561cbf1b3665c60cba2c27659721f4552 6741908 libclipper2-dbgsym_2.1.20160809-2_amd64.ddeb 7f7b2e135693c4b9f0ce78d3ed785fabbb8f1c64 609348 libclipper2_2.1.20160809-2_amd64.deb Checksums-Sha256: 09b2c2c39b1b5db540c7483e6dced2971e31ac0ae97743bd3b5955a0c4b699b6 6928 clipper_2.1.20160809-2_amd64.buildinfo 571482aa6f4345253bcdecc0e28703bb543edc28606e32d803ecdf284b9fb3dd 75132 libclipper-dev_2.1.20160809-2_amd64.deb 2bca93a3a7b1f6bcf2c1dd5b52333efc1333ac4fb375fc78f34d13d82d4d64cb 662824 libclipper-doc_2.1.20160809-2_all.deb 4284b59da5aa468fcd901c40b36a20703252f5ae488bee56b8077112b235ca37 6741908 libclipper2-dbgsym_2.1.20160809-2_amd64.ddeb 299601de2d93a7a29f0da4eb5b1f3f6e0ce2188de9a83291b8892930003688c4 609348 libclipper2_2.1.20160809-2_amd64.deb Files: 277f77f83fab697756acfe11d0122af8 6928 science optional clipper_2.1.20160809-2_amd64.buildinfo f86d7434cb371cb9c6d02c645427d32f 75132 libdevel optional libclipper-dev_2.1.20160809-2_amd64.deb 28916fddade8574a3478be40cbd19a3b 662824 doc optional libclipper-doc_2.1.20160809-2_all.deb 8a5ac39184d1d905bba30bc7cabf7159 6741908 debug optional libclipper2-dbgsym_2.1.20160809-2_amd64.ddeb f60db1fa17477e8b59a539b4b615828b 609348 libs optional libclipper2_2.1.20160809-2_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libclipper-dev_2.1.20160809-2_amd64.deb --------------------------------------- new debian package, version 2.0. size 75132 bytes: control archive=2868 bytes. 868 bytes, 20 lines control 5917 bytes, 81 lines md5sums Package: libclipper-dev Source: clipper Version: 2.1.20160809-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 655 Depends: fftw-dev, libccp4-dev, libclipper2 (= 2.1.20160809-2), libmmdb2-dev, sfftw-dev Suggests: libclipper-doc Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented development kit for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains development environment for programs which will use the clipper libraries. drwxr-xr-x root/root 0 2018-07-01 09:01 ./ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/include/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/include/clipper/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/include/clipper/ccp4/ -rw-r--r-- root/root 4349 2018-07-01 09:01 ./usr/include/clipper/ccp4/ccp4_map_io.h -rw-r--r-- root/root 10870 2018-07-01 09:01 ./usr/include/clipper/ccp4/ccp4_mtz_io.h -rw-r--r-- root/root 4187 2018-07-01 09:01 ./usr/include/clipper/ccp4/ccp4_mtz_types.h -rw-r--r-- root/root 3056 2018-07-01 09:01 ./usr/include/clipper/ccp4/ccp4_utils.h drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/include/clipper/cif/ -rw-r--r-- root/root 5200 2018-07-01 09:01 ./usr/include/clipper/cif/cif_data_io.h -rw-r--r-- root/root 228 2018-07-01 09:01 ./usr/include/clipper/clipper-ccp4.h -rw-r--r-- root/root 158 2018-07-01 09:01 ./usr/include/clipper/clipper-cctbx.h -rw-r--r-- root/root 150 2018-07-01 09:01 ./usr/include/clipper/clipper-cif.h -rw-r--r-- root/root 185 2018-07-01 09:01 ./usr/include/clipper/clipper-cns.h -rw-r--r-- root/root 510 2018-07-01 09:01 ./usr/include/clipper/clipper-contrib.h -rw-r--r-- root/root 251 2018-07-01 09:01 ./usr/include/clipper/clipper-minimol.h -rw-r--r-- root/root 154 2018-07-01 09:01 ./usr/include/clipper/clipper-mmdb.h -rw-r--r-- root/root 145 2018-07-01 09:01 ./usr/include/clipper/clipper-phs.h -rw-r--r-- root/root 542 2018-07-01 09:01 ./usr/include/clipper/clipper.h drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/include/clipper/cns/ -rw-r--r-- root/root 5204 2018-07-01 09:01 ./usr/include/clipper/cns/cns_hkl_io.h -rw-r--r-- root/root 4411 2018-07-01 09:01 ./usr/include/clipper/cns/cns_map_io.h drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/include/clipper/contrib/ -rw-r--r-- root/root 4355 2018-07-01 09:01 ./usr/include/clipper/contrib/convolution_search.h -rw-r--r-- 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2018-07-01 09:01 ./usr/share/doc/libclipper-dev/ lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/share/doc/libclipper-dev/changelog.Debian.gz -> ../libclipper2/changelog.Debian.gz -rw-r--r-- root/root 2502 2018-07-01 09:01 ./usr/share/doc/libclipper-dev/copyright libclipper-doc_2.1.20160809-2_all.deb ------------------------------------- new debian package, version 2.0. size 662824 bytes: control archive=16148 bytes. 736 bytes, 18 lines control 68986 bytes, 670 lines md5sums Package: libclipper-doc Source: clipper Version: 2.1.20160809-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 8962 Suggests: www-browser Enhances: libclipper-dev Section: doc Priority: optional Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: doxygen generated documentation for libclipper The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . 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control archive=1268 bytes. 857 bytes, 19 lines control 986 bytes, 12 lines md5sums 276 bytes, 9 lines shlibs 74 bytes, 2 lines triggers Package: libclipper2 Source: clipper Version: 2.1.20160809-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 2669 Depends: libc6 (>= 2.14), libccp4c0, libgcc1 (>= 1:4.0), libmmdb2-0, libstdc++6 (>= 5.2), sfftw2 Section: libs Priority: optional Multi-Arch: same Homepage: http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper.html Description: object oriented library for crystallographic computing The aim of the clipper project is to produce a set of object-oriented libraries for the organisation of crystallographic data and the performance of crystallographic computation. . This package contains shared libraries needed to run programs that have been developed using the clipper libraries. drwxr-xr-x root/root 0 2018-07-01 09:01 ./ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2 -> libclipper-ccp4.so.2.0.1 -rw-r--r-- root/root 253248 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-ccp4.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-cif.so.2 -> libclipper-cif.so.2.0.1 -rw-r--r-- root/root 43736 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-cif.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-cns.so.2 -> libclipper-cns.so.2.0.1 -rw-r--r-- root/root 156184 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-cns.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2 -> libclipper-contrib.so.2.0.1 -rw-r--r-- root/root 616512 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-contrib.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-core.so.2 -> libclipper-core.so.2.0.1 -rw-r--r-- root/root 1244992 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-core.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2 -> libclipper-fortran.so.2.0.1 -rw-r--r-- root/root 27056 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-fortran.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2 -> libclipper-minimol.so.2.0.1 -rw-r--r-- root/root 308720 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-minimol.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2 -> libclipper-mmdb.so.2.0.1 -rw-r--r-- root/root 27128 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-mmdb.so.2.0.1 lrwxrwxrwx root/root 0 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-phs.so.2 -> libclipper-phs.so.2.0.1 -rw-r--r-- root/root 22872 2018-07-01 09:01 ./usr/lib/x86_64-linux-gnu/libclipper-phs.so.2.0.1 drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/share/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/share/doc/libclipper2/ -rw-r--r-- root/root 1061 2018-07-01 09:01 ./usr/share/doc/libclipper2/changelog.Debian.gz -rw-r--r-- root/root 2502 2018-07-01 09:01 ./usr/share/doc/libclipper2/copyright drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-07-01 09:01 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 47 2018-07-01 09:01 ./usr/share/lintian/overrides/libclipper2 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 221552 Build-Time: 129 Distribution: cosmic-proposed Host Architecture: amd64 Install-Time: 19 Job: clipper_2.1.20160809-2.dsc Machine Architecture: amd64 Package: clipper Package-Time: 150 Source-Version: 2.1.20160809-2 Space: 221552 Status: successful Version: 2.1.20160809-2 -------------------------------------------------------------------------------- Finished at 20180701-1712 Build needed 00:02:30, 221552k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15073341 Scanning for processes to kill in build PACKAGEBUILD-15073341