https://launchpad.net/ubuntu/+source/clonalframe/1.2-11build1/+build/22599344 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-033 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:55:52 UTC 2021 aarch64 Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 7 Dec 17:37:52 ntpdate[1729]: adjust time server 10.211.37.1 offset 0.008102 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22599344 --image-type chroot /home/buildd/filecache-default/d7d0133902b8cc1df688a841d4b96e994eeac2e0 Creating target for build PACKAGEBUILD-22599344 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22599344 Starting target for build PACKAGEBUILD-22599344 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22599344 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22599344 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22599344 Updating target for build PACKAGEBUILD-22599344 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 Packages [1370 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe arm64 Packages [13.2 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5567 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 Packages [146 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [51.2 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 Packages [621 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [312 kB] Fetched 22.3 MB in 4s (5054 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils bzip2 ca-certificates cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libbz2-1.0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdpkg-perl libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sed sensible-utils systemd systemd-sysv systemd-timesyncd tzdata usrmerge util-linux 106 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 82.7 MB of archives. After this operation, 379 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main arm64 debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam0g arm64 1.4.0-10ubuntu2 [61.3 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main arm64 libcrypt-dev arm64 1:4.4.26-1 [119 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main arm64 libcrypt1 arm64 1:4.4.26-1 [87.0 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 base-files arm64 12ubuntu2 [63.2 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main arm64 debianutils arm64 5.5-1ubuntu1 [106 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main arm64 bash arm64 5.1-5ubuntu1 [771 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main arm64 bsdutils arm64 1:2.37.2-4ubuntu1 [84.5 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main arm64 libgpg-error0 arm64 1.42-3 [67.7 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcrypt20 arm64 1.9.4-3ubuntu2 [456 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 bzip2 arm64 1.0.8-5 [34.5 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libbz2-1.0 arm64 1.0.8-5 [36.0 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main arm64 libcc1-0 arm64 11.2.0-12ubuntu1 [54.1 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11-base arm64 11.2.0-12ubuntu1 [20.7 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-s1 arm64 11.2.0-12ubuntu1 [39.3 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 libgomp1 arm64 11.2.0-12ubuntu1 [115 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main arm64 libitm1 arm64 11.2.0-12ubuntu1 [28.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 libatomic1 arm64 11.2.0-12ubuntu1 [10.8 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main arm64 libasan6 arm64 11.2.0-12ubuntu1 [2228 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main arm64 liblsan0 arm64 11.2.0-12ubuntu1 [942 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main arm64 libtsan0 arm64 11.2.0-12ubuntu1 [2232 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main arm64 libubsan1 arm64 11.2.0-12ubuntu1 [908 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main arm64 libhwasan0 arm64 11.2.0-12ubuntu1 [1010 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main arm64 g++-11 arm64 11.2.0-12ubuntu1 [11.1 MB] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++-11-dev arm64 11.2.0-12ubuntu1 [2099 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-11-dev arm64 11.2.0-12ubuntu1 [1150 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11 arm64 11.2.0-12ubuntu1 [19.4 MB] Get:28 http://ftpmaster.internal/ubuntu jammy/main arm64 cpp-11 arm64 11.2.0-12ubuntu1 [9734 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++6 arm64 11.2.0-12ubuntu1 [623 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 libisl23 arm64 0.24-2 [690 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main arm64 libmpc3 arm64 1.2.1-1 [48.1 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main arm64 libzstd1 arm64 1.4.8+dfsg-3 [311 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main arm64 libctf0 arm64 2.37-10ubuntu1 [102 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main arm64 libctf-nobfd0 arm64 2.37-10ubuntu1 [106 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main arm64 libbinutils arm64 2.37-10ubuntu1 [733 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils-common arm64 2.37-10ubuntu1 [213 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils arm64 2.37-10ubuntu1 [3160 B] Get:38 http://ftpmaster.internal/ubuntu jammy/main arm64 binutils-aarch64-linux-gnu arm64 2.37-10ubuntu1 [3214 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main arm64 libssl3 arm64 3.0.0-1ubuntu1 [1753 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main arm64 libblkid1 arm64 2.37.2-4ubuntu1 [103 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main arm64 libuuid1 arm64 2.37.2-4ubuntu1 [23.8 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libcryptsetup12 arm64 2:2.4.2-1ubuntu3 [205 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main arm64 libidn2-0 arm64 2.3.2-2 [67.1 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 libp11-kit0 arm64 0.24.0-6 [231 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 libtasn1-6 arm64 4.18.0-4 [42.6 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 libgnutls30 arm64 3.7.2-2ubuntu1 [917 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 systemd-timesyncd arm64 249.5-2ubuntu1 [29.7 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 systemd-sysv arm64 249.5-2ubuntu1 [10.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main arm64 libapparmor1 arm64 3.0.3-0ubuntu4 [37.5 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main arm64 libip4tc2 arm64 1.8.7-1ubuntu4 [19.8 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 libkmod2 arm64 28-1ubuntu5 [46.4 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-8-0 arm64 10.39-3 [201 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libselinux1 arm64 3.3-1build1 [74.3 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 libmount1 arm64 2.37.2-4ubuntu1 [120 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 libseccomp2 arm64 2.5.2-2ubuntu2 [47.9 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 login arm64 1:4.8.1-2ubuntu1 [186 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 util-linux arm64 2.37.2-4ubuntu1 [1059 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 mount arm64 2.37.2-4ubuntu1 [113 kB] Get:59 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 systemd arm64 249.5-2ubuntu1 [4381 kB] Get:60 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsystemd0 arm64 249.5-2ubuntu1 [315 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libudev1 arm64 249.5-2ubuntu1 [76.0 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main arm64 libapt-pkg6.0 arm64 2.3.13 [864 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main arm64 dpkg arm64 1.20.9ubuntu3 [1244 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 dash arm64 0.5.11+git20210903+057cd650a4ed-3 [91.7 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main arm64 grep arm64 3.7-1 [152 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main arm64 libncurses6 arm64 6.3-1 [108 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main arm64 libncursesw6 arm64 6.3-1 [142 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libtinfo6 arm64 6.3-1 [104 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-bin arm64 6.3-1 [183 kB] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 sed arm64 4.8-1 [186 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-base all 6.3-1 [19.9 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgv arm64 2.2.27-2ubuntu1 [133 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main arm64 apt arm64 2.3.13 [1353 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main arm64 libsepol2 arm64 3.3-1 [274 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsemanage-common all 3.3-1build1 [10.0 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsemanage2 arm64 3.3-1build1 [89.4 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main arm64 passwd arm64 1:4.8.1-2ubuntu1 [761 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam-modules-bin arm64 1.4.0-10ubuntu2 [38.6 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam-modules arm64 1.4.0-10ubuntu2 [278 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main arm64 logsave arm64 1.46.4-1ubuntu1 [10.7 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main arm64 libext2fs2 arm64 1.46.4-1ubuntu1 [212 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main arm64 e2fsprogs arm64 1.46.4-1ubuntu1 [586 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main arm64 libattr1 arm64 1:2.5.1-1 [13.3 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main arm64 libcom-err2 arm64 1.46.4-1ubuntu1 [9954 B] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libk5crypto3 arm64 1.19.2-0ubuntu1 [91.6 kB] Get:86 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libkrb5support0 arm64 1.19.2-0ubuntu1 [32.5 kB] Get:87 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libkrb5-3 arm64 1.19.2-0ubuntu1 [356 kB] Get:88 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libgssapi-krb5-2 arm64 1.19.2-0ubuntu1 [142 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main arm64 libpam-runtime all 1.4.0-10ubuntu2 [40.2 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main arm64 libsmartcols1 arm64 2.37.2-4ubuntu1 [49.6 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main arm64 libss2 arm64 1.46.4-1ubuntu1 [11.8 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main arm64 sensible-utils all 0.0.17 [20.1 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main arm64 usrmerge all 25ubuntu2 [54.7 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main arm64 openssl arm64 3.0.0-1ubuntu1 [1155 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main arm64 ca-certificates all 20211016 [148 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main arm64 libsqlite3-0 arm64 3.36.0-2 [638 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main arm64 tzdata all 2021e-1ubuntu1 [343 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm6 arm64 1.22-1 [35.1 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main arm64 dpkg-dev all 1.20.9ubuntu3 [933 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main arm64 libdpkg-perl all 1.20.9ubuntu3 [235 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main arm64 make arm64 4.3-4ubuntu2 [176 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main arm64 lto-disabled-list all 17 [12.1 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg arm64 2.2.27-2ubuntu1 [506 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgconf arm64 2.2.27-2ubuntu1 [92.2 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg-agent arm64 2.2.27-2ubuntu1 [204 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm-compat4 arm64 1.22-1 [6370 B] Get:107 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 linux-libc-dev arm64 5.15.0-13.13 [1248 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main arm64 lockfile-progs arm64 0.1.19 [9778 B] Get:109 http://ftpmaster.internal/ubuntu jammy/main arm64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.7 MB in 2s (41.1 MB/s) (Reading database ... 13240 files and directories currently installed.) 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Setting up sensible-utils (0.0.17) ... Setting up libhwasan0:arm64 (11.2.0-12ubuntu1) ... Setting up libcrypt-dev:arm64 (1:4.4.26-1) ... Setting up gpgconf (2.2.27-2ubuntu1) ... Setting up libcryptsetup12:arm64 (2:2.4.2-1ubuntu3) ... Setting up libbinutils:arm64 (2.37-10ubuntu1) ... Setting up libisl23:arm64 (0.24-2) ... Setting up openssl (3.0.0-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libcc1-0:arm64 (11.2.0-12ubuntu1) ... Setting up gpg (2.2.27-2ubuntu1) ... Setting up liblsan0:arm64 (11.2.0-12ubuntu1) ... Setting up libitm1:arm64 (11.2.0-12ubuntu1) ... Setting up libkmod2:arm64 (28-1ubuntu5) ... Setting up libgdbm6:arm64 (1.22-1) ... Setting up libtsan0:arm64 (11.2.0-12ubuntu1) ... Setting up libctf0:arm64 (2.37-10ubuntu1) ... Setting up cpp-11 (11.2.0-12ubuntu1) ... Setting up gpg-agent (2.2.27-2ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up binutils-aarch64-linux-gnu (2.37-10ubuntu1) ... Setting up e2fsprogs (1.46.4-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up systemd (249.5-2ubuntu1) ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Initializing machine ID from random generator. Setting up binutils (2.37-10ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up systemd-timesyncd (249.5-2ubuntu1) ... Setting up libgdbm-compat4:arm64 (1.22-1) ... Setting up libgcc-11-dev:arm64 (11.2.0-12ubuntu1) ... Setting up gcc-11 (11.2.0-12ubuntu1) ... Setting up systemd-sysv (249.5-2ubuntu1) ... Setting up libstdc++-11-dev:arm64 (11.2.0-12ubuntu1) ... Setting up g++-11 (11.2.0-12ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22599344 arm64 jammy-proposed -c chroot:build-PACKAGEBUILD-22599344 --arch=arm64 --dist=jammy-proposed --nolog clonalframe_1.2-11build1.dsc Initiating build PACKAGEBUILD-22599344 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:55:52 UTC 2021 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-033.buildd +==============================================================================+ | clonalframe 1.2-11build1 (arm64) Tue, 07 Dec 2021 17:38:43 +0000 | +==============================================================================+ Package: clonalframe Version: 1.2-11build1 Source Version: 1.2-11build1 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22599344/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalframe_1.2-11build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/clonalframe-y4oUFF/clonalframe-1.2' with '<>' I: NOTICE: Log filtering will replace 'build/clonalframe-y4oUFF' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-vA5KE2/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-vA5KE2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vA5KE2/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-vA5KE2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vA5KE2/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-vA5KE2/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (75.3 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: systemd-timesyncd Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 654 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-vA5KE2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [654 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 654 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13435 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), qt5-qmake, libgsl-dev Filtered Build-Depends: debhelper-compat (= 13), qt5-qmake, libgsl-dev dpkg-deb: building package 'sbuild-build-depends-clonalframe-dummy' in '/<>/resolver-vA5KE2/apt_archive/sbuild-build-depends-clonalframe-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-clonalframe-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-vA5KE2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-vA5KE2/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-vA5KE2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-vA5KE2/apt_archive ./ Sources [508 B] Get:5 copy:/<>/resolver-vA5KE2/apt_archive ./ Packages [588 B] Fetched 2059 B in 0s (82.9 kB/s) Reading package lists... Reading package lists... Install clonalframe build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: systemd-timesyncd Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser sbuild-build-depends-clonalframe-dummy 0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 21.2 MB of archives. After this operation, 78.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-vA5KE2/apt_archive ./ sbuild-build-depends-clonalframe-dummy 0.invalid.0 [676 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main arm64 bsdextrautils arm64 2.37.2-4ubuntu1 [70.1 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main arm64 libuchardet0 arm64 0.0.7-1build1 [76.8 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main arm64 groff-base arm64 1.22.4-7 [918 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 libpipeline1 arm64 1.5.4-1 [23.3 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main arm64 man-db arm64 2.9.4-2build1 [1175 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main arm64 libelf1 arm64 0.186-1 [51.1 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main arm64 libicu67 arm64 67.1-7ubuntu1 [10.0 MB] Get:9 http://ftpmaster.internal/ubuntu jammy/main arm64 libxml2 arm64 2.9.12+dfsg-5 [725 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main arm64 libmagic-mgc arm64 1:5.41-2 [257 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main arm64 libmagic1 arm64 1:5.41-2 [84.9 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main arm64 file arm64 1:5.41-2 [21.6 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main arm64 gettext-base arm64 0.21-4ubuntu3 [35.2 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main arm64 libsigsegv2 arm64 2.13-1ubuntu2 [14.5 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main arm64 m4 arm64 1.4.18-5ubuntu1 [196 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main arm64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 automake all 1:1.16.5-1.1 [558 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main arm64 autopoint all 0.21-4ubuntu3 [422 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main arm64 libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main arm64 libtool all 2.4.6-15build1 [164 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 libfile-stripnondeterminism-perl all 1.12.1-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 libdw1 arm64 0.186-1 [246 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main arm64 debugedit arm64 1:5.0-3 [46.3 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main arm64 dwz arm64 0.14-1build1 [102 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 gettext arm64 0.21-4ubuntu3 [775 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main arm64 debhelper all 13.5.2ubuntu1 [926 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-3 [72.4 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 libgsl27 arm64 2.7.1+dfsg-3 [919 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 libgsl-dev arm64 2.7.1+dfsg-3 [1178 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/universe arm64 qt5-qmake-bin arm64 5.15.2+dfsg-14ubuntu1 [1047 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/universe arm64 qtchooser arm64 66-2build1 [23.2 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/universe arm64 qt5-qmake arm64 5.15.2+dfsg-14ubuntu1 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.2 MB in 2s (11.3 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13435 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-4ubuntu1_arm64.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1build1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_arm64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.4-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2build1_arm64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../05-libelf1_0.186-1_arm64.deb ... Unpacking libelf1:arm64 (0.186-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../06-libicu67_67.1-7ubuntu1_arm64.deb ... Unpacking libicu67:arm64 (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../07-libxml2_2.9.12+dfsg-5_arm64.deb ... Unpacking libxml2:arm64 (2.9.12+dfsg-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.41-2_arm64.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../09-libmagic1_1%3a5.41-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.41-2_arm64.deb ... Unpacking file (1:5.41-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.21-4ubuntu3_arm64.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../12-libsigsegv2_2.13-1ubuntu2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-5ubuntu1_arm64.deb ... Unpacking m4 (1.4.18-5ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.1_all.deb ... Unpacking automake (1:1.16.5-1.1) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-4ubuntu3_all.deb ... Unpacking autopoint (0.21-4ubuntu3) ... Selecting previously unselected package libdebhelper-perl. 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Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.12.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.1-1) ... Selecting previously unselected package libdw1:arm64. Preparing to unpack .../25-libdw1_0.186-1_arm64.deb ... Unpacking libdw1:arm64 (0.186-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../26-debugedit_1%3a5.0-3_arm64.deb ... Unpacking debugedit (1:5.0-3) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.14-1build1_arm64.deb ... Unpacking dwz (0.14-1build1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-4ubuntu3_arm64.deb ... Unpacking gettext (0.21-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. 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Preparing to unpack .../36-qtchooser_66-2build1_arm64.deb ... Unpacking qtchooser (66-2build1) ... Selecting previously unselected package qt5-qmake:arm64. Preparing to unpack .../37-qt5-qmake_5.15.2+dfsg-14ubuntu1_arm64.deb ... Unpacking qt5-qmake:arm64 (5.15.2+dfsg-14ubuntu1) ... Selecting previously unselected package sbuild-build-depends-clonalframe-dummy. Preparing to unpack .../38-sbuild-build-depends-clonalframe-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-clonalframe-dummy (0.invalid.0) ... Setting up libpipeline1:arm64 (1.5.4-1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7ubuntu1) ... Setting up libgslcblas0:arm64 (2.7.1+dfsg-3) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libgsl27:arm64 (2.7.1+dfsg-3) ... Setting up file (1:5.41-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up qt5-qmake-bin (5.15.2+dfsg-14ubuntu1) ... Setting up libsigsegv2:arm64 (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libuchardet0:arm64 (0.0.7-1build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libxml2:arm64 (2.9.12+dfsg-5) ... Setting up qtchooser (66-2build1) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libdw1:arm64 (0.186-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libgsl-dev (2.7.1+dfsg-3) ... Setting up qt5-qmake:arm64 (5.15.2+dfsg-14ubuntu1) ... Setting up libtool (2.4.6-15build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-3) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up sbuild-build-depends-clonalframe-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-163-generic arm64 (aarch64) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu3 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-13.13 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-5ubuntu1 binutils_2.37-10ubuntu1 binutils-aarch64-linux-gnu_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-12ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2ubuntu1 debianutils_5.5-1ubuntu1 debugedit_1:5.0-3 dh-autoreconf_20 dh-strip-nondeterminism_1.12.1-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu3 dpkg-dev_1.20.9ubuntu3 dwz_0.14-1build1 e2fsprogs_1.46.4-1ubuntu1 fakeroot_1.25.3-1.1ubuntu3 file_1:5.41-2 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-12ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-12ubuntu1 gcc-11-base_11.2.0-12ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.27-2ubuntu1 gpg-agent_2.2.27-2ubuntu1 gpgconf_2.2.27-2ubuntu1 gpgv_2.2.27-2ubuntu1 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu4 libapt-pkg6.0_2.3.13 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-12ubuntu1 libassuan0_2.5.5-1 libatomic1_11.2.0-12ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-10ubuntu1 libblkid1_2.37.2-4ubuntu1 libbz2-1.0_1.0.8-5 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-12ubuntu1 libcom-err2_1.46.4-1ubuntu1 libcrypt-dev_1:4.4.26-1 libcrypt1_1:4.4.26-1 libcryptsetup12_2:2.4.2-1ubuntu3 libctf-nobfd0_2.37-10ubuntu1 libctf0_2.37-10ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.5.2ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu3 libdw1_0.186-1 libelf1_0.186-1 libext2fs2_1.46.4-1ubuntu1 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.1-1 libgcc-11-dev_11.2.0-12ubuntu1 libgcc-s1_11.2.0-12ubuntu1 libgcrypt20_1.9.4-3ubuntu2 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.2-2ubuntu1 libgomp1_11.2.0-12ubuntu1 libgpg-error0_1.42-3 libgsl-dev_2.7.1+dfsg-3 libgsl27_2.7.1+dfsg-3 libgslcblas0_2.7.1+dfsg-3 libgssapi-krb5-2_1.19.2-0ubuntu1 libhogweed6_3.7.3-1build1 libhwasan0_11.2.0-12ubuntu1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu4 libisl23_0.24-2 libitm1_11.2.0-12ubuntu1 libjson-c5_0.15-2build3 libk5crypto3_1.19.2-0ubuntu1 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu5 libkrb5-3_1.19.2-0ubuntu1 libkrb5support0_1.19.2-0ubuntu1 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblsan0_11.2.0-12ubuntu1 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-4ubuntu1 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses6_6.3-1 libncursesw6_6.3-1 libnettle8_3.7.3-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-10ubuntu2 libpam-modules-bin_1.4.0-10ubuntu2 libpam-runtime_1.4.0-10ubuntu2 libpam0g_1.4.0-10ubuntu2 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.4-1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libreadline8_8.1-2build1 libseccomp2_2.5.2-2ubuntu2 libselinux1_3.3-1build1 libsemanage-common_3.3-1build1 libsemanage2_3.3-1build1 libsepol1_3.1-1ubuntu2 libsepol2_3.3-1 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.37.2-4ubuntu1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1ubuntu1 libssl1.1_1.1.1l-1ubuntu1 libssl3_3.0.0-1ubuntu1 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 libsub-override-perl_0.09-2 libsystemd0_249.5-2ubuntu1 libtasn1-6_4.18.0-4 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libtsan0_11.2.0-12ubuntu1 libubsan1_11.2.0-12ubuntu1 libuchardet0_0.0.7-1build1 libudev1_249.5-2ubuntu1 libunistring2_0.9.10-6 libuuid1_2.37.2-4ubuntu1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.0-13.13 lockfile-progs_0.1.19 login_1:4.8.1-2ubuntu1 logsave_1.46.4-1ubuntu1 lsb-base_11.1.0ubuntu3 lto-disabled-list_17 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 mount_2.37.2-4ubuntu1 ncurses-base_6.3-1 ncurses-bin_6.3-1 openssl_3.0.0-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-2ubuntu1 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 qt5-qmake_5.15.2+dfsg-14ubuntu1 qt5-qmake-bin_5.15.2+dfsg-14ubuntu1 qtchooser_66-2build1 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-clonalframe-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 systemd_249.5-2ubuntu1 systemd-sysv_249.5-2ubuntu1 systemd-timesyncd_249.5-2ubuntu1 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Dec 7 17:25:30 2021 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalframe_1.2-11build1.dsc dpkg-source: info: extracting clonalframe in /<> dpkg-source: info: unpacking clonalframe_1.2.orig.tar.gz dpkg-source: info: unpacking clonalframe_1.2-11build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_gcc-4.6.patch dpkg-source: info: applying no_qtlibs.patch dpkg-source: info: applying glibc2.27.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22599344 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22599344 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22599344 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalframe dpkg-buildpackage: info: source version 1.2-11build1 dpkg-buildpackage: info: source distribution jammy dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf bin build Makefile make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' QT_SELECT=5 CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive" dh_auto_configure qmake -makefile "QMAKE_CFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 make[1]: Entering directory '/<>' g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_xmfa.o src/alignment_xmfa.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_structure.o src/alignment_structure.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment.o src/alignment.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/boot.o src/boot.cpp src/alignment.cpp: In member function ‘void wb::Alignment::writeToFile(char*)’: src/alignment.cpp:236:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 236 | char * lets="ATCG"; | ^~~~~~ src/alignment.cpp:241:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 241 | for (unsigned int i=0;i='0' & ch<='9') | ~~^~~~~ src/alignment_xmfa.cpp: In constructor ‘wb::Alignment_xmfa::Alignment_xmfa(char*, bool, int)’: src/alignment_xmfa.cpp:61:68: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wformat=] 61 | printf("Warning: ignoring incomplete fragment %d (does not contain strain %s)\n",v.size(),names[missing]); | ~^ ~~~~~~~~ | | | | int std::vector::size_type {aka long unsigned int} | %ld src/alignment_xmfa.cpp:129:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (j=0;j>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/burst.o src/burst.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/consensus.o src/consensus.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/genes.o src/genes.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/hashcell.o src/hashcell.cpp src/genes.cpp: In constructor ‘wb::Genes::Genes(wb::Alignment*, char*, char*)’: src/genes.cpp:34:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 34 | fscanf(mapf,"%d",&buf); | ~~~~~~^~~~~~~~~~~~~~~~ src/genes.cpp:53:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 53 | fscanf(genes,"%d %d",&f1,&f2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_ages.o src/move_ages.cpp src/burst.cpp: In member function ‘void wb::Burst::burst(wb::Param*)’: src/burst.cpp:170:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wformat=] 170 | printf("Nb groups=%d\n",groups->size()); | ~^ ~~~~~~~~~~~~~~ | | | | int std::vector >::size_type {aka long unsigned int} | %ld src/burst.cpp:188:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for (k=1;ksize();k++) | ~^~~~~~~~~~~~ src/burst.cpp:190:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (k>=rid->size()) continue; | ~^~~~~~~~~~~~~ src/burst.cpp: In member function ‘void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector >*, int)’: src/burst.cpp:259:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 259 | if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) { | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ src/burst.cpp:252:89: warning: unused parameter ‘f’ [-Wunused-parameter] 252 | void Burst::optimiseFathers(gsl_vector_int * fathers,vector > *slvs,int f) { | ~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_delta.o src/move_delta.cpp src/hashcell.cpp: In member function ‘void wb::HashCell::addNode(wb::Tree*)’: src/hashcell.cpp:51:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 51 | if (l>=t->recMap->size) break; | ~^~~~~~~~~~~~~~~~~ src/move_ages.cpp: In member function ‘virtual void wb::Move_ages::move(wb::Param*)’: src/move_ages.cpp:60:21: warning: suggest braces around empty body in an ‘else’ statement [-Wempty-body] 60 | } else ;//printf("Age change rejected because out of range\n"); | ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_gap.o src/move_gap.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden.o src/move_hidden.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden2.o src/move_hidden2.cpp src/move_delta.cpp: In constructor ‘wb::Move_delta::Move_delta(gsl_rng*, wb::Param*)’: src/move_delta.cpp:24:50: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) { | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_mu.o src/move_mu.cpp src/move_gap.cpp: In constructor ‘wb::Move_gap::Move_gap(gsl_rng*, wb::Param*)’: src/move_gap.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_gap::Move_gap(gsl_rng * rng,Param * p) : Move(rng) {} | ~~~~~~~~^ src/move_hidden.cpp: In constructor ‘wb::Move_hidden::Move_hidden(gsl_rng*, wb::Param*)’: src/move_hidden.cpp:25:52: warning: unused parameter ‘p’ [-Wunused-parameter] 25 | Move_hidden::Move_hidden(gsl_rng * rng,Param * p) : Move(rng) | ~~~~~~~~^ src/move_hidden.cpp: In member function ‘void wb::Move_hidden::forwardfast(wb::Param*, wb::Tree*)’: src/move_hidden.cpp:127:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 127 | for (unsigned int i=0;ia->polySites,old)- gsl_vector_int_get(p->a->polySites,old-1); | ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_nu.o src/move_nu.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_rho.o src/move_rho.cpp src/move_mu.cpp: In constructor ‘wb::Move_mu::Move_mu(gsl_rng*, wb::Param*)’: src/move_mu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {} | ~~~~~~~~^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_wb.o src/move_wb.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/move.o src/move.cpp src/move_nu.cpp: In constructor ‘wb::Move_nu::Move_nu(gsl_rng*, wb::Param*)’: src/move_nu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {} | ~~~~~~~~^ src/move_nu.cpp: In member function ‘virtual void wb::Move_nu::move(wb::Param*)’: src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 56 | if (gsl_vector_char_get(t->recMap,j)==1) | ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/param.o src/param.cpp src/move_rho.cpp: In constructor ‘wb::Move_rho::Move_rho(gsl_rng*, wb::Param*)’: src/move_rho.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] 24 | Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng) | ~~~~~~~~^ src/move_wb.cpp: In member function ‘virtual void wb::Move_wb::move(wb::Param*)’: src/move_wb.cpp:127:17: warning: unused variable ‘sizeys2’ [-Wunused-variable] 127 | int sizeys2=propLocs(ys,probys,x,p); | ^~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/recorder.o src/recorder.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_coal.o src/tree_coal.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_simple.o src/tree_simple.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_upgma.o src/tree_upgma.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_newick.o src/tree_newick.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree.o src/tree.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/util.o src/util.cpp src/util.cpp: In static member function ‘static void wb::Util::normalize(double*, int)’: src/util.cpp:83:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 83 | for (unsigned int i=0;i>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -fPIC -I. -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -o build/ClonalFrame.o src/ClonalFrame.cpp src/tree.cpp: In static member function ‘static wb::Tree* wb::Tree::move(wb::Tree*, wb::Tree*, double, gsl_vector_char*, gsl_vector_char*, wb::Param*)’: src/tree.cpp:99:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] 99 | if (z!=NULL) | ^ src/tree.cpp: In member function ‘wb::Tree::llhoodb(wb::Param*)’: src/tree.cpp:229:87: warning: ‘vals[9]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 229 | } else if (gsl_vector_char_get(recMap,i)==0) {ret+=vals[8];} else {ret+=vals[9];p->rec++;} | ~~~^~~~~~~~~ src/tree.cpp:223:29: warning: ‘vals[5]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 223 | {ret+=vals[5];p->rec++;} | ~~~^~~~~~~~~ src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:83:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 83 | long int rng_seed; | ^~~~~~~~ src/ClonalFrame.cpp: In function ‘int main(int, char**)’: src/ClonalFrame.cpp:263:53: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 263 | if (cleanup==true) {a->cleanUp();a->writeToFile("/tmp/out.xmfa");} | ^~~~~~~~~~~~~~~ src/ClonalFrame.cpp:341:42: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 341 | printf("Time spent in MH in seconds:%d\n",t2-t); | ~^ ~~~~ | | | | int long unsigned int | %ld src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:96:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fread(&seed,sizeof(seed),1,devrandom); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -o bin/ClonalFrame build/alignment_xmfa.o build/alignment_structure.o build/alignment.o build/boot.o build/burst.o build/consensus.o build/genes.o build/hashcell.o build/move_ages.o build/move_delta.o build/move_gap.o build/move_hidden.o build/move_hidden2.o build/move_mu.o build/move_nu.o build/move_rho.o build/move_wb.o build/move.o build/param.o build/recorder.o build/tree_coal.o build/tree_simple.o build/tree_upgma.o build/tree_newick.o build/tree.o build/util.o build/ClonalFrame.o -lgsl -lgslcblas make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/clonalframe/ -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a 1495ccf9386f244ad70fd5f01921333980c7fbad dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing clonalframe (in debian/clonalframe); do_strip: , oemstrip: pkgstriptranslations: processing clonalframe-dbgsym (in debian/.debhelper/clonalframe/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/clonalframe/DEBIAN/control, package clonalframe, directory debian/clonalframe pkgstripfiles: Truncating usr/share/doc/clonalframe/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalframe ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-11build1_arm64.deb'. pkgstripfiles: processing control file: debian/.debhelper/clonalframe/dbgsym-root/DEBIAN/control, package clonalframe-dbgsym, directory debian/.debhelper/clonalframe/dbgsym-root dpkg-deb: building package 'clonalframe-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalframe/clonalframe-dbgsym_1.2-11build1_arm64.deb'. Renaming clonalframe-dbgsym_1.2-11build1_arm64.deb to clonalframe-dbgsym_1.2-11build1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalframe_1.2-11build1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-12-07T17:39:28Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalframe_1.2-11build1_arm64.changes: --------------------------------------- Format: 1.8 Date: Tue, 07 Dec 2021 17:25:29 +0000 Source: clonalframe Binary: clonalframe Built-For-Profiles: noudeb Architecture: arm64 Version: 1.2-11build1 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: clonalframe - inference of bacterial microevolution using multilocus sequence d Changes: clonalframe (1.2-11build1) jammy; urgency=medium . * No-change rebuild against libgsl27 Checksums-Sha1: 90340231786c767cc227f424ac215711f93366d2 255358 clonalframe-dbgsym_1.2-11build1_arm64.ddeb d04fda66ecaa47b89ec88d310828443535987af0 5930 clonalframe_1.2-11build1_arm64.buildinfo e296f54b2c9ae7191f65933f39543c8668fd856c 49202 clonalframe_1.2-11build1_arm64.deb Checksums-Sha256: 8c8921b8a02859c6db4b9cb1c5e661298c6e188e46c1c5f62ee214c8b082803d 255358 clonalframe-dbgsym_1.2-11build1_arm64.ddeb a94c2f9feb97fa81a9fdcffb59ee53b5614ecfc181f14d48958bd11ae2e22332 5930 clonalframe_1.2-11build1_arm64.buildinfo 3467bd3bbc3a970ded6ac146a0f80d162cfc3d9c483cc19f759babb13a39536b 49202 clonalframe_1.2-11build1_arm64.deb Files: 0778e2f352fa1b678c936f4f6f2a2b9c 255358 debug optional clonalframe-dbgsym_1.2-11build1_arm64.ddeb 77dc1d70d3de7b33ccb11f878887d145 5930 science optional clonalframe_1.2-11build1_arm64.buildinfo b84d0ef650a0437b3a239a48c805892f 49202 science optional clonalframe_1.2-11build1_arm64.deb Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clonalframe Binary: clonalframe clonalframe-dbgsym Architecture: arm64 Version: 1.2-11build1 Checksums-Md5: 0778e2f352fa1b678c936f4f6f2a2b9c 255358 clonalframe-dbgsym_1.2-11build1_arm64.ddeb b84d0ef650a0437b3a239a48c805892f 49202 clonalframe_1.2-11build1_arm64.deb Checksums-Sha1: 90340231786c767cc227f424ac215711f93366d2 255358 clonalframe-dbgsym_1.2-11build1_arm64.ddeb e296f54b2c9ae7191f65933f39543c8668fd856c 49202 clonalframe_1.2-11build1_arm64.deb Checksums-Sha256: 8c8921b8a02859c6db4b9cb1c5e661298c6e188e46c1c5f62ee214c8b082803d 255358 clonalframe-dbgsym_1.2-11build1_arm64.ddeb 3467bd3bbc3a970ded6ac146a0f80d162cfc3d9c483cc19f759babb13a39536b 49202 clonalframe_1.2-11build1_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Tue, 07 Dec 2021 17:39:28 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-5ubuntu1), binutils (= 2.37-10ubuntu1), binutils-aarch64-linux-gnu (= 2.37-10ubuntu1), binutils-common (= 2.37-10ubuntu1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-5), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-12ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1ubuntu1), debugedit (= 1:5.0-3), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.1-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu3), dpkg-dev (= 1.20.9ubuntu3), dwz (= 0.14-1build1), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-12ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-12ubuntu1), gcc-11-base (= 11.2.0-12ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-12ubuntu1), libatomic1 (= 11.2.0-12ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37-10ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-12ubuntu1), libcom-err2 (= 1.46.4-1ubuntu1), libcrypt-dev (= 1:4.4.26-1), libcrypt1 (= 1:4.4.26-1), libctf-nobfd0 (= 2.37-10ubuntu1), libctf0 (= 2.37-10ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.5.2ubuntu1), libdpkg-perl (= 1.20.9ubuntu3), libdw1 (= 0.186-1), libelf1 (= 0.186-1), libfile-stripnondeterminism-perl (= 1.12.1-1), libgcc-11-dev (= 11.2.0-12ubuntu1), libgcc-s1 (= 11.2.0-12ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgomp1 (= 11.2.0-12ubuntu1), libgpg-error0 (= 1.42-3), libgsl-dev (= 2.7.1+dfsg-3), libgsl27 (= 2.7.1+dfsg-3), libgslcblas0 (= 2.7.1+dfsg-3), libgssapi-krb5-2 (= 1.19.2-0ubuntu1), libhwasan0 (= 11.2.0-12ubuntu1), libicu67 (= 67.1-7ubuntu1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-12ubuntu1), libk5crypto3 (= 1.19.2-0ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.19.2-0ubuntu1), libkrb5support0 (= 1.19.2-0ubuntu1), liblsan0 (= 11.2.0-12ubuntu1), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libpam-modules (= 1.4.0-10ubuntu2), libpam-modules-bin (= 1.4.0-10ubuntu2), libpam-runtime (= 1.4.0-10ubuntu2), libpam0g (= 1.4.0-10ubuntu2), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.4-1), libseccomp2 (= 2.5.2-2ubuntu2), libselinux1 (= 3.3-1build1), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.37.2-4ubuntu1), libssl3 (= 3.0.0-1ubuntu1), libstdc++-11-dev (= 11.2.0-12ubuntu1), libstdc++6 (= 11.2.0-12ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.5-2ubuntu1), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-12ubuntu1), libubsan1 (= 11.2.0-12ubuntu1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 249.5-2ubuntu1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-4ubuntu1), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-13.13), login (= 1:4.8.1-2ubuntu1), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 17), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), qt5-qmake (= 5.15.2+dfsg-14ubuntu1), qt5-qmake-bin (= 5.15.2+dfsg-14ubuntu1), qtchooser (= 66-2build1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), util-linux (= 2.37.2-4ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1638897929" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalframe_1.2-11build1_arm64.deb ---------------------------------- new Debian package, version 2.0. size 49202 bytes: control archive=1170 bytes. 1317 bytes, 24 lines control 577 bytes, 8 lines md5sums Package: clonalframe Version: 1.2-11build1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 111 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgsl27 (>= 2.7.1), libstdc++6 (>= 11) Suggests: clonalframeml Section: science Priority: optional Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Description: inference of bacterial microevolution using multilocus sequence data ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance. . ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2021-12-07 17:25 ./ drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/ drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/bin/ -rwxr-xr-x root/root 92264 2021-12-07 17:25 ./usr/bin/ClonalFrame drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/share/ drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/share/doc/clonalframe/ -rw-r--r-- root/root 412 2021-09-27 19:23 ./usr/share/doc/clonalframe/README.Debian -rw-r--r-- root/root 278 2021-09-27 19:23 ./usr/share/doc/clonalframe/README.test -rw-r--r-- root/root 1330 2021-12-07 17:25 ./usr/share/doc/clonalframe/changelog.Debian.gz -rw-r--r-- root/root 1300 2021-09-27 19:23 ./usr/share/doc/clonalframe/copyright drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/share/doc/clonalframe/examples/ -rw-r--r-- root/root 409 2021-09-27 19:23 ./usr/share/doc/clonalframe/examples/example.fasta -rw-r--r-- root/root 344 2021-09-27 19:23 ./usr/share/doc/clonalframe/run-unit-test drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/share/man/ drwxr-xr-x root/root 0 2021-12-07 17:25 ./usr/share/man/man1/ -rw-r--r-- root/root 1055 2021-12-07 17:25 ./usr/share/man/man1/ClonalFrame.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: n/a Build-Time: 28 Distribution: jammy-proposed Host Architecture: arm64 Install-Time: 16 Job: clonalframe_1.2-11build1.dsc Machine Architecture: arm64 Package: clonalframe Package-Time: 45 Source-Version: 1.2-11build1 Space: n/a Status: successful Version: 1.2-11build1 -------------------------------------------------------------------------------- Finished at 2021-12-07T17:39:28Z Build needed 00:00:45, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-22599344 Scanning for processes to kill in build PACKAGEBUILD-22599344