https://launchpad.net/ubuntu/+source/clonalframe/1.2-8/+build/14827868 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-019 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:04 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 4 May 20:23:33 ntpdate[1816]: adjust time server 10.211.37.1 offset 0.001260 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14827868 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-14827868 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14827868 Starting target for build PACKAGEBUILD-14827868 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14827868 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14827868 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14827868 Updating target for build PACKAGEBUILD-14827868 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1006 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8525 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [18.5 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [10.2 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [44.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [26.7 kB] Fetched 15.6 MB in 5s (3196 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libasan4 libatomic1 libbinutils libblkid1 libcc1-0 libcilkrts5 libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgomp1 libitm1 libmount1 libmpx2 libncurses5 libncursesw5 libprocps6 libquadmath0 libreadline7 libsmartcols1 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libuuid1 mount ncurses-base ncurses-bin pinentry-curses procps readline-common util-linux 50 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 36.4 MB of archives. After this operation, 1245 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-2ubuntu2 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 bsdutils i386 1:2.31.1-0.4ubuntu4 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-2ubuntu2 [166 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-2ubuntu2 [141 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuuid1 i386 2.31.1-0.4ubuntu4 [20.6 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libblkid1 i386 2.31.1-0.4ubuntu4 [139 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libfdisk1 i386 2.31.1-0.4ubuntu4 [182 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmount1 i386 2.31.1-0.4ubuntu4 [149 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsmartcols1 i386 2.31.1-0.4ubuntu4 [91.8 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 fdisk i386 2.31.1-0.4ubuntu4 [116 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 util-linux i386 2.31.1-0.4ubuntu4 [929 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 mount i386 2.31.1-0.4ubuntu4 [112 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libquadmath0 i386 8.1.0-1ubuntu2 [208 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libitm1 i386 8.1.0-1ubuntu2 [30.8 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8-base i386 8.1.0-1ubuntu2 [18.1 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++6 i386 8.1.0-1ubuntu2 [430 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpx2 i386 8.1.0-1ubuntu2 [12.9 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libcc1-0 i386 8.1.0-1ubuntu2 [41.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libatomic1 i386 8.1.0-1ubuntu2 [9608 B] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 libgomp1 i386 8.1.0-1ubuntu2 [80.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc1 i386 1:8.1.0-1ubuntu2 [48.1 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-2ubuntu2 [128 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-2ubuntu2 [101 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-2ubuntu2 [79.7 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps6 i386 2:3.3.12-3ubuntu2 [32.3 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-2ubuntu2 [108 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.12-3ubuntu2 [224 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 readline-common all 7.0-4ubuntu1 [52.3 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libreadline7 i386 7.0-4ubuntu1 [127 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.30-17ubuntu1 [193 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.30-17ubuntu1 [3392 B] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.30-17ubuntu1 [2028 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.30-17ubuntu1 [544 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan4 i386 7.3.0-17ubuntu1 [361 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan0 i386 7.3.0-17ubuntu1 [141 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libcilkrts5 i386 7.3.0-17ubuntu1 [47.3 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 g++-7 i386 7.3.0-17ubuntu1 [7814 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7 i386 7.3.0-17ubuntu1 [7694 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-7-dev i386 7.3.0-17ubuntu1 [1505 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-7-dev i386 7.3.0-17ubuntu1 [2406 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-7 i386 7.3.0-17ubuntu1 [6967 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7-base i386 7.3.0-17ubuntu1 [18.9 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp i386 4:7.3.0-3ubuntu3 [27.6 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc i386 4:7.3.0-3ubuntu3 [5268 B] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++ i386 4:7.3.0-3ubuntu3 [1596 B] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 pinentry-curses i386 1.1.0-1build1 [37.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.4 MB in 1s (38.4 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_i386.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_i386.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_i386.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... Selecting previously unselected package libncursesw6:i386. (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libncursesw6:i386 (6.1+20180210-2ubuntu2) ... Setting up libncursesw6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libuuid1_2.31.1-0.4ubuntu4_i386.deb ... Unpacking libuuid1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libblkid1_2.31.1-0.4ubuntu4_i386.deb ... Unpacking libblkid1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.31.1-0.4ubuntu4_i386.deb ... Unpacking libfdisk1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu4_i386.deb ... Unpacking libmount1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.31.1-0.4ubuntu4_i386.deb ... Unpacking libsmartcols1:i386 (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:i386 (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../fdisk_2.31.1-0.4ubuntu4_i386.deb ... Unpacking fdisk (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.31.1-0.4ubuntu4) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../util-linux_2.31.1-0.4ubuntu4_i386.deb ... 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Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../23-build-essential_12.5ubuntu2_i386.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../24-pinentry-curses_1.1.0-1build1_i386.deb ... Unpacking pinentry-curses (1.1.0-1build1) over (1.1.0-1) ... Setting up libquadmath0:i386 (8.1.0-1ubuntu2) ... Setting up libncurses5:i386 (6.1+20180210-2ubuntu2) ... Setting up libgomp1:i386 (8.1.0-1ubuntu2) ... Setting up libatomic1:i386 (8.1.0-1ubuntu2) ... Setting up readline-common (7.0-4ubuntu1) ... Setting up libcc1-0:i386 (8.1.0-1ubuntu2) ... Setting up libncursesw5:i386 (6.1+20180210-2ubuntu2) ... Setting up libreadline7:i386 (7.0-4ubuntu1) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up libprocps6:i386 (2:3.3.12-3ubuntu2) ... Setting up gcc-7-base:i386 (7.3.0-17ubuntu1) ... Setting up binutils-common:i386 (2.30-17ubuntu1) ... Setting up libmpx2:i386 (8.1.0-1ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libncurses6:i386 (6.1+20180210-2ubuntu2) ... Setting up libitm1:i386 (8.1.0-1ubuntu2) ... Setting up libasan4:i386 (7.3.0-17ubuntu1) ... Setting up libbinutils:i386 (2.30-17ubuntu1) ... Setting up libcilkrts5:i386 (7.3.0-17ubuntu1) ... Setting up libubsan0:i386 (7.3.0-17ubuntu1) ... Setting up libgcc-7-dev:i386 (7.3.0-17ubuntu1) ... Setting up cpp-7 (7.3.0-17ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:i386 (7.3.0-17ubuntu1) ... Setting up binutils-i686-linux-gnu (2.30-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-17ubuntu1) ... Setting up g++-7 (7.3.0-17ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14827868 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-14827868 --arch=i386 --dist=cosmic-proposed --nolog clonalframe_1.2-8.dsc Initiating build PACKAGEBUILD-14827868 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:04 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-019.buildd +==============================================================================+ | clonalframe 1.2-8 (i386) 04 May 2018 20:24 | +==============================================================================+ Package: clonalframe Version: 1.2-8 Source Version: 1.2-8 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/clonalframe-uaBsDC/clonalframe-1.2' with '<>' I: NOTICE: Log filtering will replace 'build/clonalframe-uaBsDC' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14827868/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalframe_1.2-8.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-V56hU2/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-V56hU2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-V56hU2/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-V56hU2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-V56hU2/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-V56hU2/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (127 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-V56hU2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), qt5-qmake, libgsl-dev Filtered Build-Depends: debhelper (>= 11~), qt5-qmake, libgsl-dev dpkg-deb: building package 'sbuild-build-depends-clonalframe-dummy' in '/<>/resolver-RbqUks/apt_archive/sbuild-build-depends-clonalframe-dummy.deb'. Ign:1 copy:/<>/resolver-RbqUks/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RbqUks/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-RbqUks/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RbqUks/apt_archive ./ Sources [232 B] Get:5 copy:/<>/resolver-RbqUks/apt_archive ./ Packages [550 B] Fetched 2901 B in 0s (191 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clonalframe build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser sbuild-build-depends-clonalframe-dummy 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After this operation, 76.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RbqUks/apt_archive ./ sbuild-build-depends-clonalframe-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.8.7-1 [44.7 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.32-2 [184 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.32-2 [75.0 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.32-2 [22.0 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-3ubuntu3 [8193 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2 i386 2.9.4+dfsg1-6.1ubuntu1 [697 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-6build1 [51.3 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-1 [15.0 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 17 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.2.1ubuntu1 [906 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgslcblas0 i386 2.4+dfsg-6 [80.5 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgsl23 i386 2.4+dfsg-6 [802 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgsl-dev i386 2.4+dfsg-6 [1042 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 qt5-qmake-bin i386 5.9.5+dfsg-0ubuntu1 [1020 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 qtchooser i386 64-ga1b6736-5 [25.6 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 qt5-qmake i386 5.9.5+dfsg-0ubuntu1 [180 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.1 MB in 1s (28.4 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_i386.deb ... Unpacking libbsd0:i386 (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_i386.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.32-2_i386.deb ... Unpacking libmagic-mgc (1:5.32-2) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../06-libmagic1_1%3a5.32-2_i386.deb ... Unpacking libmagic1:i386 (1:5.32-2) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.32-2_i386.deb ... Unpacking file (1:5.32-2) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../08-libglib2.0-0_2.56.1-2ubuntu1_i386.deb ... Unpacking libglib2.0-0:i386 (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:i386. Preparing to unpack .../09-libicu60_60.2-3ubuntu3_i386.deb ... Unpacking libicu60:i386 (60.2-3ubuntu3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../10-libxml2_2.9.4+dfsg1-6.1ubuntu1_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.19.8.1-6build1_i386.deb ... Unpacking gettext-base (0.19.8.1-6build1) ... Selecting previously unselected package libsigsegv2:i386. 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Unpacking sbuild-build-depends-clonalframe-dummy (0.invalid.0) ... Setting up libicu60:i386 (60.2-3ubuntu3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up qt5-qmake-bin (5.9.5+dfsg-0ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:i386 (2.12-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:i386 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up qtchooser (64-ga1b6736-5) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.8.7-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:i386 (1:5.32-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up qt5-qmake:i386 (5.9.5+dfsg-0ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgslcblas0:i386 (2.4+dfsg-6) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libgsl23:i386 (2.4+dfsg-6) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libgsl-dev (2.4+dfsg-6) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-clonalframe-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic amd64 (i686) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-17ubuntu1 gcc-7_7.3.0-17ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.44 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-i686-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-17ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-17ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-17ubuntu1 gcc-7-base_7.3.0-17ubuntu1 gcc-8-base_8.1.0-1ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-17ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu2 libcilkrts5_7.3.0-17ubuntu1 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-17ubuntu1 libgcc1_1:8.1.0-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu2 libgpg-error0_1.27-6 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libhogweed4_3.4-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-1ubuntu2 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-1ubuntu2 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libquadmath0_8.1.0-1ubuntu2 libreadline7_7.0-4ubuntu1 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2 libubsan0_7.3.0-17ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 qt5-qmake_5.9.5+dfsg-0ubuntu1 qt5-qmake-bin_5.9.5+dfsg-0ubuntu1 qtchooser_64-ga1b6736-5 readline-common_7.0-4ubuntu1 sbuild-build-depends-clonalframe-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Mar 5 16:19:43 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalframe_1.2-8.dsc dpkg-source: info: extracting clonalframe in clonalframe-1.2 dpkg-source: info: unpacking clonalframe_1.2.orig.tar.gz dpkg-source: info: unpacking clonalframe_1.2-8.debian.tar.xz dpkg-source: info: applying 01_gcc-4.6.patch dpkg-source: info: applying no_qtlibs.patch dpkg-source: info: applying glibc2.27.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14827868 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14827868 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14827868 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalframe dpkg-buildpackage: info: source version 1.2-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clonalframe-1.2 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf bin build Makefile make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a qmake -makefile "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash debian/rules override_dh_auto_build make[1]: Entering directory '/<>' qmake # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now:" Makefile /usr/bin/make make[2]: Entering directory '/<>' g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_xmfa.o src/alignment_xmfa.cpp src/alignment_xmfa.cpp: In constructor ‘wb::Alignment_xmfa::Alignment_xmfa(char*, bool, int)’: src/alignment_xmfa.cpp:129:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0;j>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_structure.o src/alignment_structure.cpp src/alignment_structure.cpp: In constructor ‘wb::Alignment_structure::Alignment_structure(char*, int)’: src/alignment_structure.cpp:45:19: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] if (ch>='0' & ch<='9') ~~^~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment.o src/alignment.cpp src/alignment.cpp: In member function ‘void wb::Alignment::writeToFile(char*)’: src/alignment.cpp:236:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char * lets="ATCG"; ^~~~~~ src/alignment.cpp:241:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i=0;i>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/boot.o src/boot.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/burst.o src/burst.cpp src/burst.cpp: In member function ‘void wb::Burst::burst(wb::Param*)’: src/burst.cpp:188:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (k=1;ksize();k++) ~^~~~~~~~~~~~ src/burst.cpp:190:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (k>=rid->size()) continue; ~^~~~~~~~~~~~~ src/burst.cpp: In member function ‘void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector >*, int)’: src/burst.cpp:259:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) { ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ src/burst.cpp:252:89: warning: unused parameter ‘f’ [-Wunused-parameter] void Burst::optimiseFathers(gsl_vector_int * fathers,vector > *slvs,int f) { ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/consensus.o src/consensus.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/genes.o src/genes.cpp src/genes.cpp: In constructor ‘wb::Genes::Genes(wb::Alignment*, char*, char*)’: src/genes.cpp:34:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(mapf,"%d",&buf); ~~~~~~^~~~~~~~~~~~~~~~ src/genes.cpp:53:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(genes,"%d %d",&f1,&f2); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/hashcell.o src/hashcell.cpp src/hashcell.cpp: In member function ‘void wb::HashCell::addNode(wb::Tree*)’: src/hashcell.cpp:51:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (l>=t->recMap->size) break; ~^~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_ages.o src/move_ages.cpp src/move_ages.cpp: In member function ‘virtual void wb::Move_ages::move(wb::Param*)’: src/move_ages.cpp:60:21: warning: suggest braces around empty body in an ‘else’ statement [-Wempty-body] } else ;//printf("Age change rejected because out of range\n"); ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_delta.o src/move_delta.cpp src/move_delta.cpp: In constructor ‘wb::Move_delta::Move_delta(gsl_rng*, wb::Param*)’: src/move_delta.cpp:24:50: warning: unused parameter ‘p’ [-Wunused-parameter] Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) { ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_gap.o src/move_gap.cpp src/move_gap.cpp: In constructor ‘wb::Move_gap::Move_gap(gsl_rng*, wb::Param*)’: src/move_gap.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] Move_gap::Move_gap(gsl_rng * rng,Param * p) : Move(rng) {} ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden.o src/move_hidden.cpp src/move_hidden.cpp: In constructor ‘wb::Move_hidden::Move_hidden(gsl_rng*, wb::Param*)’: src/move_hidden.cpp:25:52: warning: unused parameter ‘p’ [-Wunused-parameter] Move_hidden::Move_hidden(gsl_rng * rng,Param * p) : Move(rng) ^ src/move_hidden.cpp: In member function ‘void wb::Move_hidden::forwardfast(wb::Param*, wb::Tree*)’: src/move_hidden.cpp:127:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i=0;ia->polySites,old)- gsl_vector_int_get(p->a->polySites,old-1); ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden2.o src/move_hidden2.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_mu.o src/move_mu.cpp src/move_mu.cpp: In constructor ‘wb::Move_mu::Move_mu(gsl_rng*, wb::Param*)’: src/move_mu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {} ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_nu.o src/move_nu.cpp src/move_nu.cpp: In constructor ‘wb::Move_nu::Move_nu(gsl_rng*, wb::Param*)’: src/move_nu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {} ^ src/move_nu.cpp: In member function ‘virtual void wb::Move_nu::move(wb::Param*)’: src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (gsl_vector_char_get(t->recMap,j)==1) ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_rho.o src/move_rho.cpp src/move_rho.cpp: In constructor ‘wb::Move_rho::Move_rho(gsl_rng*, wb::Param*)’: src/move_rho.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng) ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_wb.o src/move_wb.cpp src/move_wb.cpp: In member function ‘virtual void wb::Move_wb::move(wb::Param*)’: src/move_wb.cpp:127:17: warning: unused variable ‘sizeys2’ [-Wunused-variable] int sizeys2=propLocs(ys,probys,x,p); ^~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/move.o src/move.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/param.o src/param.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/recorder.o src/recorder.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_coal.o src/tree_coal.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_simple.o src/tree_simple.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_upgma.o src/tree_upgma.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_newick.o src/tree_newick.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree.o src/tree.cpp src/tree.cpp: In static member function ‘static wb::Tree* wb::Tree::move(wb::Tree*, wb::Tree*, double, gsl_vector_char*, gsl_vector_char*, wb::Param*)’: src/tree.cpp:99:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (z!=NULL) ^ src/tree.cpp: In member function ‘double wb::Tree::llhoodb(wb::Param*)’: src/tree.cpp:229:87: warning: ‘vals[9]’ may be used uninitialized in this function [-Wmaybe-uninitialized] } else if (gsl_vector_char_get(recMap,i)==0) {ret+=vals[8];} else {ret+=vals[9];p->rec++;} ~~~^~~~~~~~~ src/tree.cpp:223:29: warning: ‘vals[5]’ may be used uninitialized in this function [-Wmaybe-uninitialized] {ret+=vals[5];p->rec++;} ~~~^~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/util.o src/util.cpp src/util.cpp: In static member function ‘static void wb::Util::normalize(double*, int)’: src/util.cpp:83:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i=0;i>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/i386-linux-gnu/qt5/mkspecs/linux-g++ -o build/ClonalFrame.o src/ClonalFrame.cpp src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:83:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] long int rng_seed; ^~~~~~~~ src/ClonalFrame.cpp: In function ‘int main(int, char**)’: src/ClonalFrame.cpp:263:68: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (cleanup==true) {a->cleanUp();a->writeToFile("/tmp/out.xmfa");} ^ src/ClonalFrame.cpp:341:51: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] printf("Time spent in MH in seconds:%d\n",t2-t); ~~~~^ src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:96:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(seed),1,devrandom); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bin/ClonalFrame build/alignment_xmfa.o build/alignment_structure.o build/alignment.o build/boot.o build/burst.o build/consensus.o build/genes.o build/hashcell.o build/move_ages.o build/move_delta.o build/move_gap.o build/move_hidden.o build/move_hidden2.o build/move_mu.o build/move_nu.o build/move_rho.o build/move_wb.o build/move.o build/param.o build/recorder.o build/tree_coal.o build/tree_simple.o build/tree_upgma.o build/tree_newick.o build/tree.o build/util.o build/ClonalFrame.o -lgsl -lgslcblas make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clonalframe/usr/bin/ClonalFrame was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing clonalframe-dbgsym (in debian/.debhelper/clonalframe/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing clonalframe (in debian/clonalframe); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clonalframe/dbgsym-root/DEBIAN/control, package clonalframe-dbgsym, directory debian/.debhelper/clonalframe/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalframe-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalframe-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalframe/clonalframe-dbgsym_1.2-8_i386.deb'. Renaming clonalframe-dbgsym_1.2-8_i386.deb to clonalframe-dbgsym_1.2-8_i386.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clonalframe/DEBIAN/control, package clonalframe, directory debian/clonalframe pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalframe ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-8_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalframe_1.2-8_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clonalframe-1.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180504-2024 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalframe_1.2-8_i386.changes: ------------------------------- Format: 1.8 Date: Mon, 05 Mar 2018 17:15:32 +0100 Source: clonalframe Binary: clonalframe Architecture: i386 Version: 1.2-8 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clonalframe - inference of bacterial microevolution using multilocus sequence d Closes: 891335 Changes: clonalframe (1.2-8) unstable; urgency=medium . [ Adrian Bunk ] * comment out erroneous unused code which breaks build with glibc 2.27 Closes: #891335 . [ Andreas Tille ] * cme fix dpkg-copyright * Standards-Version: 4.1.3 * debhelper 11 Checksums-Sha1: 4df20afdae561c619608b3204efd48444a589fae 318548 clonalframe-dbgsym_1.2-8_i386.ddeb 55469008d1741fc37d9f62d4bc9b60178d034b40 5205 clonalframe_1.2-8_i386.buildinfo 090ae275d6e1bd4c020b62629b2de06cb6037e79 54216 clonalframe_1.2-8_i386.deb Checksums-Sha256: 0adf77c736dcd9633f0e4545556882a59317bd0e9981672ceeef19cd90bd2256 318548 clonalframe-dbgsym_1.2-8_i386.ddeb cfcb23f8c1047b1119bd9e8f6f5f4973248e7cb5214d2fc878d8d81fba3bc4de 5205 clonalframe_1.2-8_i386.buildinfo 88f3bb810bc55e43efb107a680b5193485ae0a417edf516d3c73e4e8a06d04b9 54216 clonalframe_1.2-8_i386.deb Files: 3bcdc7eaaaa1e83e9b5a8393b7caad3d 318548 debug optional clonalframe-dbgsym_1.2-8_i386.ddeb 36fd0692f645e54bff17b23c3aa4c949 5205 science optional clonalframe_1.2-8_i386.buildinfo d74eb31859e210d1177d3efd861ff310 54216 science optional clonalframe_1.2-8_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalframe_1.2-8_i386.deb -------------------------- new debian package, version 2.0. size 54216 bytes: control archive=1176 bytes. 1310 bytes, 24 lines control 348 bytes, 5 lines md5sums Package: clonalframe Version: 1.2-8 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 126 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libgsl23, libgslcblas0, libstdc++6 (>= 5.2) Suggests: clonalframeml Section: science Priority: optional Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Description: inference of bacterial microevolution using multilocus sequence data ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance. . ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame. drwxr-xr-x root/root 0 2018-03-05 16:15 ./ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/bin/ -rwxr-xr-x root/root 112092 2018-03-05 16:15 ./usr/bin/ClonalFrame drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/doc/clonalframe/ -rw-r--r-- root/root 412 2018-03-05 16:15 ./usr/share/doc/clonalframe/README.Debian -rw-r--r-- root/root 1085 2018-03-05 16:15 ./usr/share/doc/clonalframe/changelog.Debian.gz -rw-r--r-- root/root 1300 2018-03-05 16:15 ./usr/share/doc/clonalframe/copyright drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/man/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/man/man1/ -rw-r--r-- root/root 1055 2018-03-05 16:15 ./usr/share/man/man1/ClonalFrame.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 4108 Build-Time: 35 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 13 Job: clonalframe_1.2-8.dsc Machine Architecture: amd64 Package: clonalframe Package-Time: 49 Source-Version: 1.2-8 Space: 4108 Status: successful Version: 1.2-8 -------------------------------------------------------------------------------- Finished at 20180504-2024 Build needed 00:00:49, 4108k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14827868 Scanning for processes to kill in build PACKAGEBUILD-14827868 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14827868 Stopping target for build PACKAGEBUILD-14827868 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14827868 Removing build PACKAGEBUILD-14827868