https://launchpad.net/ubuntu/+source/clonalframe/1.2-8/+build/14827870 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-006 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:33:03 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 4 May 19:58:49 ntpdate[1760]: adjust time server 10.211.37.1 offset 0.003097 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14827870 /home/buildd/filecache-default/17124f3eec304530bbb077109f97da7d4ad52147 Creating target for build PACKAGEBUILD-14827870 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14827870 Starting target for build PACKAGEBUILD-14827870 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14827870 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14827870 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14827870 Updating target for build PACKAGEBUILD-14827870 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x Packages [942 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe s390x Packages [8171 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x Packages [16.5 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [10.2 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x Packages [33.0 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [26.7 kB] Fetched 15.1 MB in 3s (4903 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libasan4 libatomic1 libbinutils libblkid1 libcc1-0 libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgomp1 libitm1 libmount1 libncurses5 libncursesw5 libprocps6 libreadline7 libsmartcols1 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libuuid1 mount ncurses-base ncurses-bin pinentry-curses procps readline-common util-linux 47 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 27.9 MB of archives. After this operation, 1281 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main s390x base-files s390x 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo6 s390x 6.1+20180210-2ubuntu2 [80.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x bash s390x 4.4.18-2ubuntu2 [583 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x bsdutils s390x 1:2.31.1-0.4ubuntu4 [58.0 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x dpkg s390x 1.19.0.5ubuntu3 [1121 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-bin s390x 6.1+20180210-2ubuntu2 [159 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw6 s390x 6.1+20180210-2ubuntu2 [120 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libuuid1 s390x 2.31.1-0.4ubuntu4 [20.0 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libblkid1 s390x 2.31.1-0.4ubuntu4 [117 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libfdisk1 s390x 2.31.1-0.4ubuntu4 [152 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libmount1 s390x 2.31.1-0.4ubuntu4 [126 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsmartcols1 s390x 2.31.1-0.4ubuntu4 [79.2 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x fdisk s390x 2.31.1-0.4ubuntu4 [103 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x util-linux s390x 2.31.1-0.4ubuntu4 [867 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x mount s390x 2.31.1-0.4ubuntu4 [103 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x libgomp1 s390x 8.1.0-1ubuntu2 [69.8 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x libitm1 s390x 8.1.0-1ubuntu2 [26.9 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-8-base s390x 8.1.0-1ubuntu2 [18.1 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x libstdc++6 s390x 8.1.0-1ubuntu2 [398 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x libcc1-0 s390x 8.1.0-1ubuntu2 [37.3 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libatomic1 s390x 8.1.0-1ubuntu2 [8428 B] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcc1 s390x 1:8.1.0-1ubuntu2 [25.1 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw5 s390x 6.1+20180210-2ubuntu2 [108 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses5 s390x 6.1+20180210-2ubuntu2 [89.0 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo5 s390x 6.1+20180210-2ubuntu2 [76.2 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x libprocps6 s390x 2:3.3.12-3ubuntu2 [30.1 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses6 s390x 6.1+20180210-2ubuntu2 [94.3 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main s390x procps s390x 2:3.3.12-3ubuntu2 [215 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x readline-common all 7.0-4ubuntu1 [52.3 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libreadline7 s390x 7.0-4ubuntu1 [117 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x libbinutils s390x 2.30-17ubuntu1 [305 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-common s390x 2.30-17ubuntu1 [193 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils s390x 2.30-17ubuntu1 [3324 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x binutils-s390x-linux-gnu s390x 2.30-17ubuntu1 [1722 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x libasan4 s390x 7.3.0-17ubuntu1 [318 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x libubsan0 s390x 7.3.0-17ubuntu1 [120 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x g++-7 s390x 7.3.0-17ubuntu1 [5989 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7 s390x 7.3.0-17ubuntu1 [5886 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x libstdc++-7-dev s390x 7.3.0-17ubuntu1 [1454 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcc-7-dev s390x 7.3.0-17ubuntu1 [641 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x cpp-7 s390x 7.3.0-17ubuntu1 [5186 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x gcc-7-base s390x 7.3.0-17ubuntu1 [18.9 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x cpp s390x 4:7.3.0-3ubuntu3 [27.5 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc s390x 4:7.3.0-3ubuntu3 [5204 B] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x g++ s390x 4:7.3.0-3ubuntu3 [1592 B] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x build-essential s390x 12.5ubuntu2 [4740 B] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x pinentry-curses s390x 1.1.0-1build1 [34.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.9 MB in 1s (49.4 MB/s) (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_s390x.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:s390x. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_s390x.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_s390x.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_s390x.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... Selecting previously unselected package libncursesw6:s390x. (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncursesw6:s390x (6.1+20180210-2ubuntu2) ... Setting up libncursesw6:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libuuid1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libuuid1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libblkid1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libblkid1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libfdisk1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libmount1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking libsmartcols1:s390x (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:s390x (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../fdisk_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking fdisk (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../util-linux_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking util-linux (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.31.1-0.4ubuntu4) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20180210-2ubuntu2_all.deb ... Unpacking ncurses-base (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-base (6.1+20180210-2ubuntu2) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../mount_2.31.1-0.4ubuntu4_s390x.deb ... Unpacking mount (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Preparing to unpack .../libgomp1_8.1.0-1ubuntu2_s390x.deb ... Unpacking libgomp1:s390x (8.1.0-1ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libitm1_8.1.0-1ubuntu2_s390x.deb ... Unpacking libitm1:s390x (8.1.0-1ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../gcc-8-base_8.1.0-1ubuntu2_s390x.deb ... Unpacking gcc-8-base:s390x (8.1.0-1ubuntu2) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:s390x (8.1.0-1ubuntu2) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.1.0-1ubuntu2_s390x.deb ... Unpacking libstdc++6:s390x (8.1.0-1ubuntu2) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:s390x (8.1.0-1ubuntu2) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libcc1-0_8.1.0-1ubuntu2_s390x.deb ... Unpacking libcc1-0:s390x (8.1.0-1ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libatomic1_8.1.0-1ubuntu2_s390x.deb ... Unpacking libatomic1:s390x (8.1.0-1ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libgcc1_1%3a8.1.0-1ubuntu2_s390x.deb ... Unpacking libgcc1:s390x (1:8.1.0-1ubuntu2) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:s390x (1:8.1.0-1ubuntu2) ... (Reading database ... 12399 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncursesw5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libncurses5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncurses5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libtinfo5:s390x (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up libtinfo5:s390x (6.1+20180210-2ubuntu2) ... (Reading database ... 12397 files and directories currently installed.) Preparing to unpack .../00-libprocps6_2%3a3.3.12-3ubuntu2_s390x.deb ... Unpacking libprocps6:s390x (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Selecting previously unselected package libncurses6:s390x. Preparing to unpack .../01-libncurses6_6.1+20180210-2ubuntu2_s390x.deb ... Unpacking libncurses6:s390x (6.1+20180210-2ubuntu2) ... Preparing to unpack .../02-procps_2%3a3.3.12-3ubuntu2_s390x.deb ... Unpacking procps (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Preparing to unpack .../03-readline-common_7.0-4ubuntu1_all.deb ... Unpacking readline-common (7.0-4ubuntu1) over (7.0-3) ... Preparing to unpack .../04-libreadline7_7.0-4ubuntu1_s390x.deb ... Unpacking libreadline7:s390x (7.0-4ubuntu1) over (7.0-3) ... Preparing to unpack .../05-libbinutils_2.30-17ubuntu1_s390x.deb ... Unpacking libbinutils:s390x (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../06-binutils-common_2.30-17ubuntu1_s390x.deb ... Unpacking binutils-common:s390x (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../07-binutils_2.30-17ubuntu1_s390x.deb ... Unpacking binutils (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../08-binutils-s390x-linux-gnu_2.30-17ubuntu1_s390x.deb ... Unpacking binutils-s390x-linux-gnu (2.30-17ubuntu1) over (2.30-15ubuntu1) ... Preparing to unpack .../09-libasan4_7.3.0-17ubuntu1_s390x.deb ... Unpacking libasan4:s390x (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../10-libubsan0_7.3.0-17ubuntu1_s390x.deb ... Unpacking libubsan0:s390x (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../11-g++-7_7.3.0-17ubuntu1_s390x.deb ... Unpacking g++-7 (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../12-gcc-7_7.3.0-17ubuntu1_s390x.deb ... Unpacking gcc-7 (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../13-libstdc++-7-dev_7.3.0-17ubuntu1_s390x.deb ... Unpacking libstdc++-7-dev:s390x (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../14-libgcc-7-dev_7.3.0-17ubuntu1_s390x.deb ... Unpacking libgcc-7-dev:s390x (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../15-cpp-7_7.3.0-17ubuntu1_s390x.deb ... Unpacking cpp-7 (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../16-gcc-7-base_7.3.0-17ubuntu1_s390x.deb ... Unpacking gcc-7-base:s390x (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../17-cpp_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking cpp (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../18-gcc_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking gcc (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../19-g++_4%3a7.3.0-3ubuntu3_s390x.deb ... Unpacking g++ (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../20-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../21-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../22-build-essential_12.5ubuntu2_s390x.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../23-pinentry-curses_1.1.0-1build1_s390x.deb ... Unpacking pinentry-curses (1.1.0-1build1) over (1.1.0-1) ... Setting up libncurses5:s390x (6.1+20180210-2ubuntu2) ... Setting up libgomp1:s390x (8.1.0-1ubuntu2) ... Setting up libatomic1:s390x (8.1.0-1ubuntu2) ... Setting up readline-common (7.0-4ubuntu1) ... Setting up libcc1-0:s390x (8.1.0-1ubuntu2) ... Setting up libncursesw5:s390x (6.1+20180210-2ubuntu2) ... Setting up libreadline7:s390x (7.0-4ubuntu1) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up libprocps6:s390x (2:3.3.12-3ubuntu2) ... Setting up gcc-7-base:s390x (7.3.0-17ubuntu1) ... Setting up binutils-common:s390x (2.30-17ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libncurses6:s390x (6.1+20180210-2ubuntu2) ... Setting up libitm1:s390x (8.1.0-1ubuntu2) ... Setting up libasan4:s390x (7.3.0-17ubuntu1) ... Setting up libbinutils:s390x (2.30-17ubuntu1) ... Setting up libubsan0:s390x (7.3.0-17ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.30-17ubuntu1) ... Setting up libgcc-7-dev:s390x (7.3.0-17ubuntu1) ... Setting up cpp-7 (7.3.0-17ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:s390x (7.3.0-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-17ubuntu1) ... Setting up g++-7 (7.3.0-17ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14827870 s390x cosmic-proposed -c chroot:build-PACKAGEBUILD-14827870 --arch=s390x --dist=cosmic-proposed --nolog clonalframe_1.2-8.dsc Initiating build PACKAGEBUILD-14827870 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:33:03 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-006.buildd +==============================================================================+ | clonalframe 1.2-8 (s390x) 04 May 2018 19:59 | +==============================================================================+ Package: clonalframe Version: 1.2-8 Source Version: 1.2-8 Distribution: cosmic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/clonalframe-6WNja0/clonalframe-1.2' with '<>' I: NOTICE: Log filtering will replace 'build/clonalframe-6WNja0' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14827870/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalframe_1.2-8.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-6f05PN/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-6f05PN/apt_archive ./ InRelease Get:2 copy:/<>/resolver-6f05PN/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-6f05PN/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-6f05PN/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-6f05PN/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-6f05PN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), qt5-qmake, libgsl-dev Filtered Build-Depends: debhelper (>= 11~), qt5-qmake, libgsl-dev dpkg-deb: building package 'sbuild-build-depends-clonalframe-dummy' in '/<>/resolver-hK73Hh/apt_archive/sbuild-build-depends-clonalframe-dummy.deb'. Ign:1 copy:/<>/resolver-hK73Hh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hK73Hh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hK73Hh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hK73Hh/apt_archive ./ Sources [232 B] Get:5 copy:/<>/resolver-hK73Hh/apt_archive ./ Packages [551 B] Fetched 2902 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clonalframe build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf qt5-qmake qt5-qmake-bin qtchooser sbuild-build-depends-clonalframe-dummy 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 18.9 MB of archives. After this operation, 77.2 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hK73Hh/apt_archive ./ sbuild-build-depends-clonalframe-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libbsd0 s390x 0.8.7-1 [40.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x man-db s390x 2.8.3-2 [1007 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic-mgc s390x 1:5.32-2 [185 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic1 s390x 1:5.32-2 [66.9 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x file s390x 1:5.32-2 [21.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-0 s390x 2.56.1-2ubuntu1 [1077 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x libicu60 s390x 60.2-3ubuntu3 [7837 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libxml2 s390x 2.9.4+dfsg1-6.1ubuntu1 [587 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext-base s390x 0.19.8.1-6build1 [48.2 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x libsigsegv2 s390x 2.12-1 [14.6 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x autopoint all 0.19.8.1-6build1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-autoreconf all 17 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libarchive-zip-perl all 1.60-1 [83.9 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext s390x 0.19.8.1-6build1 [858 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main s390x po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main s390x debhelper all 11.2.1ubuntu1 [906 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/universe s390x libgslcblas0 s390x 2.4+dfsg-6 [75.8 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/universe s390x libgsl23 s390x 2.4+dfsg-6 [716 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/universe s390x libgsl-dev s390x 2.4+dfsg-6 [900 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x qt5-qmake-bin s390x 5.9.5+dfsg-0ubuntu1 [850 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x qtchooser s390x 64-ga1b6736-5 [22.9 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x qt5-qmake s390x 5.9.5+dfsg-0ubuntu1 [180 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.9 MB in 1s (20.0 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_s390x.deb ... Unpacking libbsd0:s390x (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_s390x.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_s390x.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.32-2_s390x.deb ... Unpacking libmagic-mgc (1:5.32-2) ... Selecting previously unselected package libmagic1:s390x. 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Unpacking sbuild-build-depends-clonalframe-dummy (0.invalid.0) ... Setting up libicu60:s390x (60.2-3ubuntu3) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up qt5-qmake-bin (5.9.5+dfsg-0ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:s390x (2.12-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:s390x (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up qtchooser (64-ga1b6736-5) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:s390x (0.8.7-1) ... Setting up libxml2:s390x (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:s390x (1:5.32-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Setting up qt5-qmake:s390x (5.9.5+dfsg-0ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgslcblas0:s390x (2.4+dfsg-6) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libgsl23:s390x (2.4+dfsg-6) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libgsl-dev (2.4+dfsg-6) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-clonalframe-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic s390x (s390x) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-17ubuntu1 gcc-7_7.3.0-17ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.44 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-s390x-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-17ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-17ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-17ubuntu1 gcc-7-base_7.3.0-17ubuntu1 gcc-8-base_8.1.0-1ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-17ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu2 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-17ubuntu1 libgcc1_1:8.1.0-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu2 libgpg-error0_1.27-6 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libhogweed4_3.4-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-1ubuntu2 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libreadline7_7.0-4ubuntu1 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2 libubsan0_7.3.0-17ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 qt5-qmake_5.9.5+dfsg-0ubuntu1 qt5-qmake-bin_5.9.5+dfsg-0ubuntu1 qtchooser_64-ga1b6736-5 readline-common_7.0-4ubuntu1 sbuild-build-depends-clonalframe-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Mar 5 16:19:43 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalframe_1.2-8.dsc dpkg-source: info: extracting clonalframe in clonalframe-1.2 dpkg-source: info: unpacking clonalframe_1.2.orig.tar.gz dpkg-source: info: unpacking clonalframe_1.2-8.debian.tar.xz dpkg-source: info: applying 01_gcc-4.6.patch dpkg-source: info: applying no_qtlibs.patch dpkg-source: info: applying glibc2.27.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14827870 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14827870 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14827870 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalframe dpkg-buildpackage: info: source version 1.2-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clonalframe-1.2 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf bin build Makefile make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a qmake -makefile "QMAKE_CFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/.qmake.stash debian/rules override_dh_auto_build make[1]: Entering directory '/<>' qmake # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now:" Makefile /usr/bin/make make[2]: Entering directory '/<>' g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_xmfa.o src/alignment_xmfa.cpp src/alignment_xmfa.cpp: In constructor ‘wb::Alignment_xmfa::Alignment_xmfa(char*, bool, int)’: src/alignment_xmfa.cpp:61:125: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘std::vector::size_type {aka long unsigned int}’ [-Wformat=] printf("Warning: ignoring incomplete fragment %d (does not contain strain %s)\n",v.size(),names[missing]); ~~~~~~~~ ^ src/alignment_xmfa.cpp:129:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j=0;j>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment_structure.o src/alignment_structure.cpp src/alignment_structure.cpp: In constructor ‘wb::Alignment_structure::Alignment_structure(char*, int)’: src/alignment_structure.cpp:45:19: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] if (ch>='0' & ch<='9') ~~^~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/alignment.o src/alignment.cpp src/alignment.cpp: In member function ‘void wb::Alignment::writeToFile(char*)’: src/alignment.cpp:236:21: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] char * lets="ATCG"; ^~~~~~ src/alignment.cpp:241:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i=0;i>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/boot.o src/boot.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/burst.o src/burst.cpp src/burst.cpp: In member function ‘void wb::Burst::burst(wb::Param*)’: src/burst.cpp:170:47: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘std::vector >::size_type {aka long unsigned int}’ [-Wformat=] printf("Nb groups=%d\n",groups->size()); ~~~~~~~~~~~~~~^ src/burst.cpp:188:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (k=1;ksize();k++) ~^~~~~~~~~~~~ src/burst.cpp:190:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (k>=rid->size()) continue; ~^~~~~~~~~~~~~ src/burst.cpp: In member function ‘void wb::Burst::optimiseFathers(gsl_vector_int*, std::vector >*, int)’: src/burst.cpp:259:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (slvs->at(prop).size()>current && !descended(prop,i,fathers)) { ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ src/burst.cpp:252:89: warning: unused parameter ‘f’ [-Wunused-parameter] void Burst::optimiseFathers(gsl_vector_int * fathers,vector > *slvs,int f) { ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/consensus.o src/consensus.cpp src/consensus.cpp: In member function ‘char* wb::Consensus::retConsensus(double)’: src/consensus.cpp:148:14: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] bool all[n]; ^~~ src/consensus.cpp:148:14: note: in a call to built-in allocation function ‘void* __builtin_alloca_with_align(long unsigned int, long unsigned int)’ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/genes.o src/genes.cpp src/genes.cpp: In constructor ‘wb::Genes::Genes(wb::Alignment*, char*, char*)’: src/genes.cpp:34:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(mapf,"%d",&buf); ~~~~~~^~~~~~~~~~~~~~~~ src/genes.cpp:53:19: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] fscanf(genes,"%d %d",&f1,&f2); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/hashcell.o src/hashcell.cpp src/hashcell.cpp: In member function ‘void wb::HashCell::addNode(wb::Tree*)’: src/hashcell.cpp:51:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (l>=t->recMap->size) break; ~^~~~~~~~~~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_ages.o src/move_ages.cpp src/move_ages.cpp: In member function ‘virtual void wb::Move_ages::move(wb::Param*)’: src/move_ages.cpp:60:21: warning: suggest braces around empty body in an ‘else’ statement [-Wempty-body] } else ;//printf("Age change rejected because out of range\n"); ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_delta.o src/move_delta.cpp src/move_delta.cpp: In constructor ‘wb::Move_delta::Move_delta(gsl_rng*, wb::Param*)’: src/move_delta.cpp:24:50: warning: unused parameter ‘p’ [-Wunused-parameter] Move_delta::Move_delta(gsl_rng * rng,Param * p):Move(rng) { ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_gap.o src/move_gap.cpp src/move_gap.cpp: In constructor ‘wb::Move_gap::Move_gap(gsl_rng*, wb::Param*)’: src/move_gap.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] Move_gap::Move_gap(gsl_rng * rng,Param * p) : Move(rng) {} ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden.o src/move_hidden.cpp src/move_hidden.cpp: In constructor ‘wb::Move_hidden::Move_hidden(gsl_rng*, wb::Param*)’: src/move_hidden.cpp:25:52: warning: unused parameter ‘p’ [-Wunused-parameter] Move_hidden::Move_hidden(gsl_rng * rng,Param * p) : Move(rng) ^ src/move_hidden.cpp: In member function ‘void wb::Move_hidden::forwardfast(wb::Param*, wb::Tree*)’: src/move_hidden.cpp:127:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i=0;ia->polySites,old)- gsl_vector_int_get(p->a->polySites,old-1); ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_hidden2.o src/move_hidden2.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_mu.o src/move_mu.cpp src/move_mu.cpp: In constructor ‘wb::Move_mu::Move_mu(gsl_rng*, wb::Param*)’: src/move_mu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] Move_mu::Move_mu(gsl_rng * rng,Param * p):Move(rng) {} ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_nu.o src/move_nu.cpp src/move_nu.cpp: In constructor ‘wb::Move_nu::Move_nu(gsl_rng*, wb::Param*)’: src/move_nu.cpp:24:44: warning: unused parameter ‘p’ [-Wunused-parameter] Move_nu::Move_nu(gsl_rng * rng,Param * p):Move(rng) {} ^ src/move_nu.cpp: In member function ‘virtual void wb::Move_nu::move(wb::Param*)’: src/move_nu.cpp:56:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (gsl_vector_char_get(t->recMap,j)==1) ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_rho.o src/move_rho.cpp src/move_rho.cpp: In constructor ‘wb::Move_rho::Move_rho(gsl_rng*, wb::Param*)’: src/move_rho.cpp:24:46: warning: unused parameter ‘p’ [-Wunused-parameter] Move_rho::Move_rho(gsl_rng * rng,Param * p):Move(rng) ^ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move_wb.o src/move_wb.cpp src/move_wb.cpp: In member function ‘virtual void wb::Move_wb::move(wb::Param*)’: src/move_wb.cpp:127:17: warning: unused variable ‘sizeys2’ [-Wunused-variable] int sizeys2=propLocs(ys,probys,x,p); ^~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/move.o src/move.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/param.o src/param.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/recorder.o src/recorder.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_coal.o src/tree_coal.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_simple.o src/tree_simple.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_upgma.o src/tree_upgma.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree_newick.o src/tree_newick.cpp g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/tree.o src/tree.cpp src/tree.cpp: In static member function ‘static wb::Tree* wb::Tree::move(wb::Tree*, wb::Tree*, double, gsl_vector_char*, gsl_vector_char*, wb::Param*)’: src/tree.cpp:99:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else] if (z!=NULL) ^ src/tree.cpp: In member function ‘double wb::Tree::llhoodb(wb::Param*)’: src/tree.cpp:229:87: warning: ‘vals[9]’ may be used uninitialized in this function [-Wmaybe-uninitialized] } else if (gsl_vector_char_get(recMap,i)==0) {ret+=vals[8];} else {ret+=vals[9];p->rec++;} ~~~^~~~~~~~~ src/tree.cpp:223:29: warning: ‘vals[5]’ may be used uninitialized in this function [-Wmaybe-uninitialized] {ret+=vals[5];p->rec++;} ~~~^~~~~~~~~ g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/util.o src/util.cpp src/util.cpp: In static member function ‘static void wb::Util::normalize(double*, int)’: src/util.cpp:83:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (unsigned int i=0;i>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/s390x-linux-gnu/qt5/mkspecs/linux-g++ -o build/ClonalFrame.o src/ClonalFrame.cpp src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:83:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] long int rng_seed; ^~~~~~~~ src/ClonalFrame.cpp: In function ‘int main(int, char**)’: src/ClonalFrame.cpp:263:68: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] if (cleanup==true) {a->cleanUp();a->writeToFile("/tmp/out.xmfa");} ^ src/ClonalFrame.cpp:341:51: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] printf("Time spent in MH in seconds:%d\n",t2-t); ~~~~^ src/ClonalFrame.cpp: In function ‘gsl_rng* makerng()’: src/ClonalFrame.cpp:96:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&seed,sizeof(seed),1,devrandom); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bin/ClonalFrame build/alignment_xmfa.o build/alignment_structure.o build/alignment.o build/boot.o build/burst.o build/consensus.o build/genes.o build/hashcell.o build/move_ages.o build/move_delta.o build/move_gap.o build/move_hidden.o build/move_hidden2.o build/move_mu.o build/move_nu.o build/move_rho.o build/move_wb.o build/move.o build/param.o build/recorder.o build/tree_coal.o build/tree_simple.o build/tree_upgma.o build/tree_newick.o build/tree.o build/util.o build/ClonalFrame.o -lgsl -lgslcblas make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clonalframe/usr/bin/ClonalFrame was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing clonalframe-dbgsym (in debian/.debhelper/clonalframe/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing clonalframe (in debian/clonalframe); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clonalframe/dbgsym-root/DEBIAN/control, package clonalframe-dbgsym, directory debian/.debhelper/clonalframe/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalframe-dbgsym ... pkgstripfiles: processing control file: debian/clonalframe/DEBIAN/control, package clonalframe, directory debian/clonalframe pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalframe-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalframe/clonalframe-dbgsym_1.2-8_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalframe ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalframe' in '../clonalframe_1.2-8_s390x.deb'. Renaming clonalframe-dbgsym_1.2-8_s390x.deb to clonalframe-dbgsym_1.2-8_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalframe_1.2-8_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clonalframe-1.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180504-1959 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalframe_1.2-8_s390x.changes: -------------------------------- Format: 1.8 Date: Mon, 05 Mar 2018 17:15:32 +0100 Source: clonalframe Binary: clonalframe Architecture: s390x Version: 1.2-8 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clonalframe - inference of bacterial microevolution using multilocus sequence d Closes: 891335 Changes: clonalframe (1.2-8) unstable; urgency=medium . [ Adrian Bunk ] * comment out erroneous unused code which breaks build with glibc 2.27 Closes: #891335 . [ Andreas Tille ] * cme fix dpkg-copyright * Standards-Version: 4.1.3 * debhelper 11 Checksums-Sha1: ecda4dfdb28dfd676331d684486bd1b00b440fb9 350248 clonalframe-dbgsym_1.2-8_s390x.ddeb eeb59eda19659911636d5cb61c1e0c23c308fc58 5117 clonalframe_1.2-8_s390x.buildinfo 9bb1f8cd5f588db8d32eb236ac0a068d9003fca1 48396 clonalframe_1.2-8_s390x.deb Checksums-Sha256: c3c98b412cc38fc370c71dc2e54190cc6e7a2147845aa97381deeb888d8db53d 350248 clonalframe-dbgsym_1.2-8_s390x.ddeb 0430cecabedb36dafe34024ff70f50e78014a8c9cd7a7096798bf0abbfe0c331 5117 clonalframe_1.2-8_s390x.buildinfo 539da6b88579aa867f238d34869d7207d2caa947ab177b9d38a34ff220dc25cb 48396 clonalframe_1.2-8_s390x.deb Files: c35ca39e3da8d69aa2b6f59801b671ff 350248 debug optional clonalframe-dbgsym_1.2-8_s390x.ddeb 2aca49602aea4d833d611a79ea6f59f4 5117 science optional clonalframe_1.2-8_s390x.buildinfo 2700d6695a6a1a11cf33e9a8a35ed352 48396 science optional clonalframe_1.2-8_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalframe_1.2-8_s390x.deb --------------------------- new debian package, version 2.0. size 48396 bytes: control archive=1180 bytes. 1311 bytes, 24 lines control 348 bytes, 5 lines md5sums Package: clonalframe Version: 1.2-8 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 135 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libgsl23, libgslcblas0, libstdc++6 (>= 5.2) Suggests: clonalframeml Section: science Priority: optional Homepage: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Description: inference of bacterial microevolution using multilocus sequence data ClonalFrame identifies the clonal relationships between the members of a sample, while also estimating the chromosomal position of homologous recombination events that have disrupted the clonal inheritance. . ClonalFrame can be applied to any kind of sequence data, from a single fragment of DNA to whole genomes. It is well suited for the analysis of MLST data, where 7 gene fragments have been sequenced, but becomes progressively more powerful as the sequenced regions increase in length and number up to whole genomes. However, it requires the sequences to be aligned. If you have genomic data that is not aligned, it is recommend to use Mauve which produces alignment of whole bacterial genomes in exactly the format required for analysis with ClonalFrame. drwxr-xr-x root/root 0 2018-03-05 16:15 ./ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/bin/ -rwxr-xr-x root/root 120928 2018-03-05 16:15 ./usr/bin/ClonalFrame drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/doc/clonalframe/ -rw-r--r-- root/root 412 2018-03-05 16:15 ./usr/share/doc/clonalframe/README.Debian -rw-r--r-- root/root 1085 2018-03-05 16:15 ./usr/share/doc/clonalframe/changelog.Debian.gz -rw-r--r-- root/root 1300 2018-03-05 16:15 ./usr/share/doc/clonalframe/copyright drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/man/ drwxr-xr-x root/root 0 2018-03-05 16:15 ./usr/share/man/man1/ -rw-r--r-- root/root 1055 2018-03-05 16:15 ./usr/share/man/man1/ClonalFrame.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 5076 Build-Time: 16 Distribution: cosmic-proposed Host Architecture: s390x Install-Time: 7 Job: clonalframe_1.2-8.dsc Machine Architecture: s390x Package: clonalframe Package-Time: 24 Source-Version: 1.2-8 Space: 5076 Status: successful Version: 1.2-8 -------------------------------------------------------------------------------- Finished at 20180504-1959 Build needed 00:00:24, 5076k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14827870 Scanning for processes to kill in build PACKAGEBUILD-14827870 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14827870 Stopping target for build PACKAGEBUILD-14827870 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-14827870 Removing build PACKAGEBUILD-14827870