https://launchpad.net/ubuntu/+source/clonalorigin/1.0-3/+build/16225028 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-002 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 2 Jan 23:15:07 ntpdate[1816]: adjust time server 10.211.37.1 offset 0.000066 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16225028 /home/buildd/filecache-default/12198815be27835f4527655ec2ee7fabeb41ea11 Creating target for build PACKAGEBUILD-16225028 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16225028 Starting target for build PACKAGEBUILD-16225028 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16225028 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16225028 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16225028 Updating target for build PACKAGEBUILD-16225028 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [968 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8771 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5179 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [85.0 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [43.8 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [385 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [212 kB] Fetched 16.6 MB in 6s (2893 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-aarch64-linux-gnu binutils-common cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 libpng16-16 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 libzstd1 linux-libc-dev sed tzdata 43 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After this operation, 180 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main arm64 dpkg arm64 1.19.2ubuntu2 [1088 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 dash arm64 0.5.10.2-4 [84.1 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 sed arm64 4.7-1 [186 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgnutls30 arm64 3.6.5-2ubuntu1 [699 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libubsan1 arm64 8.2.0-13ubuntu1 [113 kB] Get:7 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtsan0 arm64 8.2.0-13ubuntu1 [269 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gcc-8-base arm64 8.2.0-13ubuntu1 [18.6 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgcc1 arm64 1:8.2.0-13ubuntu1 [34.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgomp1 arm64 8.2.0-13ubuntu1 [69.6 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libitm1 arm64 8.2.0-13ubuntu1 [24.4 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libatomic1 arm64 8.2.0-13ubuntu1 [9124 B] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libasan5 arm64 8.2.0-13ubuntu1 [337 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 liblsan0 arm64 8.2.0-13ubuntu1 [120 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 cpp-8 arm64 8.2.0-13ubuntu1 [5713 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libcc1-0 arm64 8.2.0-13ubuntu1 [36.3 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 g++-8 arm64 8.2.0-13ubuntu1 [6550 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gcc-8 arm64 8.2.0-13ubuntu1 [6472 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgcc-8-dev arm64 8.2.0-13ubuntu1 [856 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libstdc++-8-dev arm64 8.2.0-13ubuntu1 [1513 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libstdc++6 arm64 8.2.0-13ubuntu1 [371 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libbinutils arm64 2.31.1-11ubuntu1 [461 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils-common arm64 2.31.1-11ubuntu1 [194 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils arm64 2.31.1-11ubuntu1 [3364 B] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-11ubuntu1 [2177 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libzstd1 arm64 1.3.5+dfsg-2 [201 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libapt-pkg5.0 arm64 1.8.0~alpha3 [751 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 apt arm64 1.8.0~alpha3 [1116 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 libext2fs2 arm64 1.44.5-1 [153 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 e2fsprogs arm64 1.44.5-1 [491 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 init arm64 1.56+nmu1 [6080 B] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgpg-error0 arm64 1.33-3 [54.8 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libcom-err2 arm64 1.44.5-1 [9216 B] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 libss2 arm64 1.44.5-1 [10.6 kB] Get:35 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.26.0+fossilbc891ac6b-1 [492 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 tzdata all 2018i-1 [189 kB] Get:37 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpng16-16 arm64 1.6.36-2 [173 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 e2fslibs arm64 1.44.5-1 [2704 B] Get:41 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libassuan0 arm64 2.5.2-1 [32.9 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 libcomerr2 arm64 1.44.5-1 [2700 B] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.19.0-9.10 [1021 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.9 MB in 2s (21.0 MB/s) (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_arm64.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_arm64.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_arm64.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_arm64.deb ... Unpacking libgnutls30:arm64 (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:arm64 (3.6.5-2ubuntu1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../libubsan1_8.2.0-13ubuntu1_arm64.deb ... Unpacking libubsan1:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../libtsan0_8.2.0-13ubuntu1_arm64.deb ... Unpacking libtsan0:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../gcc-8-base_8.2.0-13ubuntu1_arm64.deb ... Unpacking gcc-8-base:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Setting up gcc-8-base:arm64 (8.2.0-13ubuntu1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-13ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:8.2.0-13ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:arm64 (1:8.2.0-13ubuntu1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../00-libgomp1_8.2.0-13ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../01-libitm1_8.2.0-13ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../02-libatomic1_8.2.0-13ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../03-libasan5_8.2.0-13ubuntu1_arm64.deb ... Unpacking libasan5:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../04-liblsan0_8.2.0-13ubuntu1_arm64.deb ... Unpacking liblsan0:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../05-cpp-8_8.2.0-13ubuntu1_arm64.deb ... Unpacking cpp-8 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../06-libcc1-0_8.2.0-13ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (8.2.0-13ubuntu1) over (8.2.0-12ubuntu1) ... 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Setting up linux-libc-dev:arm64 (4.19.0-9.10) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up liblsan0:arm64 (8.2.0-13ubuntu1) ... Setting up binutils-common:arm64 (2.31.1-11ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:arm64 (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:arm64 (1.44.5-1) ... Setting up libasan5:arm64 (8.2.0-13ubuntu1) ... Setting up libassuan0:arm64 (2.5.2-1) ... Setting up libitm1:arm64 (8.2.0-13ubuntu1) ... Setting up libubsan1:arm64 (8.2.0-13ubuntu1) ... Setting up libbinutils:arm64 (2.31.1-11ubuntu1) ... Setting up binutils-aarch64-linux-gnu (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:arm64 (8.2.0-13ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up libstdc++-8-dev:arm64 (8.2.0-13ubuntu1) ... Setting up gcc-8 (8.2.0-13ubuntu1) ... Setting up g++-8 (8.2.0-13ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16225028 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-16225028 --arch=arm64 --dist=disco-proposed --nolog clonalorigin_1.0-3.dsc Initiating build PACKAGEBUILD-16225028 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-002.buildd +==============================================================================+ | clonalorigin 1.0-3 (arm64) 02 Jan 2019 23:15 | +==============================================================================+ Package: clonalorigin Version: 1.0-3 Source Version: 1.0-3 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/clonalorigin-ySuK4E/clonalorigin-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/clonalorigin-ySuK4E' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16225028/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalorigin_1.0-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Ar_G8Z/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Ar_G8Z/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Ar_G8Z/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Ar_G8Z/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Ar_G8Z/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Ar_G8Z/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (118 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Ar_G8Z/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libgsl-dev, rename Filtered Build-Depends: debhelper (>= 11~), libgsl-dev, rename dpkg-deb: building package 'sbuild-build-depends-clonalorigin-dummy' in '/<>/resolver-bhPfMs/apt_archive/sbuild-build-depends-clonalorigin-dummy.deb'. Ign:1 copy:/<>/resolver-bhPfMs/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bhPfMs/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-bhPfMs/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bhPfMs/apt_archive ./ Sources [227 B] Get:5 copy:/<>/resolver-bhPfMs/apt_archive ./ Packages [547 B] Fetched 2893 B in 0s (139 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clonalorigin build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libuchardet0 libxml2 m4 man-db po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libuchardet0 libxml2 m4 man-db po-debconf rename sbuild-build-depends-clonalorigin-dummy 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 18.0 MB of archives. After this operation, 73.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bhPfMs/apt_archive ./ sbuild-build-depends-clonalorigin-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:4 http://ftpmaster.internal/ubuntu disco/universe arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 groff-base arm64 1.22.4-1 [813 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 libpipeline1 arm64 1.5.0-2 [24.2 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 man-db arm64 2.8.4-3 [1017 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic-mgc arm64 1:5.34-2 [197 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 libmagic1 arm64 1:5.34-2 [69.5 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 file arm64 1:5.34-2 [22.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libelf1 arm64 0.175-2 [43.6 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main arm64 libglib2.0-0 arm64 2.58.1-2 [1106 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main arm64 libicu63 arm64 63.1-5 [8144 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu3 [562 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main arm64 gettext-base arm64 0.19.8.1-9 [48.0 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main arm64 m4 arm64 1.4.18-2 [194 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main arm64 autoconf all 2.69-11 [322 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main arm64 automake all 1:1.16.1-4 [522 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main arm64 autopoint all 0.19.8.1-9 [412 kB] Get:22 http://ftpmaster.internal/ubuntu disco/main arm64 libtool all 2.4.6-6 [195 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main arm64 dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main arm64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 dwz arm64 0.12-3 [71.8 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 libcroco3 arm64 0.6.12-3 [76.8 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 gettext arm64 0.19.8.1-9 [853 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 po-debconf all 1.0.21 [233 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 debhelper all 12ubuntu1 [887 kB] Get:33 http://ftpmaster.internal/ubuntu disco/universe arm64 libgslcblas0 arm64 2.5+dfsg-6 [52.4 kB] Get:34 http://ftpmaster.internal/ubuntu disco/universe arm64 libgsl23 arm64 2.5+dfsg-6 [737 kB] Get:35 http://ftpmaster.internal/ubuntu disco/universe arm64 libgsl-dev arm64 2.5+dfsg-6 [939 kB] Get:36 http://ftpmaster.internal/ubuntu disco/universe arm64 rename all 1.10-1 [16.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.0 MB in 1s (28.7 MB/s) Selecting previously unselected package libbsd0:arm64. (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-1_arm64.deb ... Unpacking groff-base (1.22.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.0-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.4-3_arm64.deb ... Unpacking man-db (2.8.4-3) ... Selecting previously unselected package libmagic-mgc. 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Unpacking libxml2:arm64 (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.19.8.1-9_arm64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../14-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-2_arm64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. 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Unpacking libgslcblas0:arm64 (2.5+dfsg-6) ... Selecting previously unselected package libgsl23:arm64. Preparing to unpack .../32-libgsl23_2.5+dfsg-6_arm64.deb ... Unpacking libgsl23:arm64 (2.5+dfsg-6) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../33-libgsl-dev_2.5+dfsg-6_arm64.deb ... Unpacking libgsl-dev (2.5+dfsg-6) ... Selecting previously unselected package rename. Preparing to unpack .../34-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) ... Selecting previously unselected package sbuild-build-depends-clonalorigin-dummy. Preparing to unpack .../35-sbuild-build-depends-clonalorigin-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libicu63:arm64 (63.1-5) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up libelf1:arm64 (0.175-2) ... Setting up libglib2.0-0:arm64 (2.58.1-2) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:arm64 (1.5.0-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:arm64 (1:5.34-2) ... Setting up libcroco3:arm64 (0.6.12-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgslcblas0:arm64 (2.5+dfsg-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up libgsl23:arm64 (2.5+dfsg-6) ... Setting up gettext (0.19.8.1-9) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up groff-base (1.22.4-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc-8_8.2.0-13ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-aarch64-linux-gnu_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-13ubuntu1 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-13ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-13ubuntu1 gcc-8-base_8.2.0-13ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.8-3ubuntu1 gpg-agent_2.2.8-3ubuntu1 gpgconf_2.2.8-3ubuntu1 gpgv_2.2.8-3ubuntu1 grep_3.1-3 groff-base_1.22.4-1 gzip_1.6-5ubuntu2 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-13ubuntu1 libassuan0_2.5.2-1 libatomic1_8.2.0-13ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-11ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-13ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-13ubuntu1 libgcc1_1:8.2.0-13ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-13ubuntu1 libgpg-error0_1.33-3 libgsl-dev_2.5+dfsg-6 libgsl23_2.5+dfsg-6 libgslcblas0_2.5+dfsg-6 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-13ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-13ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.1-2 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-1build2 libsemanage1_2.8-1build2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-13ubuntu1 libstdc++6_8.2.0-13ubuntu1 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libtsan0_8.2.0-13ubuntu1 libubsan1_8.2.0-13ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.5+dfsg-2 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.4-3 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 rename_1.10-1 sbuild-build-depends-clonalorigin-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-3 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jan 2 14:43:18 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalorigin_1.0-3.dsc dpkg-source: info: extracting clonalorigin in clonalorigin-1.0 dpkg-source: info: unpacking clonalorigin_1.0.orig.tar.gz dpkg-source: info: unpacking clonalorigin_1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying portability.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16225028 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16225028 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16225028 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalorigin dpkg-buildpackage: info: source version 1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --sourcedirectory=warg dh_auto_clean -O--sourcedirectory=warg dh_autoreconf_clean -O--sourcedirectory=warg dh_clean -O--sourcedirectory=warg debian/rules build-arch dh build-arch --sourcedirectory=warg dh_update_autotools_config -a -O--sourcedirectory=warg dh_autoreconf -a -O--sourcedirectory=warg configure.ac:41: installing 'config/compile' configure.ac:9: installing 'config/install-sh' configure.ac:9: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' dh_auto_configure -a -O--sourcedirectory=warg cd warg && ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for floor... no checking for pow... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a -O--sourcedirectory=warg cd warg && make -j4 make[1]: Entering directory '/<>/warg' Making all in src make[2]: Entering directory '/<>/warg/src' make all-am make[3]: Entering directory '/<>/warg/src' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-data.o `test -f 'data.cpp' || echo './'`data.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rng.o `test -f 'rng.cpp' || echo './'`rng.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-wargxml.o `test -f 'wargxml.cpp' || echo './'`wargxml.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-move.o `test -f 'move.cpp' || echo './'`move.cpp data.cpp: In constructor ‘weakarg::Data::Data(std::__cxx11::string)’: data.cpp:50:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] }else if(getNumber(tmpname)!=which){ ~~~~~~~~~~~~~~~~~~^~~~~~~ rng.cpp: In function ‘long unsigned int weakarg::makerng(bool)’: rng.cpp:16:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] long int rng_seed; ^~~~~~~~ rng.cpp: In function ‘int weakarg::loadrng(std::__cxx11::string)’: rng.cpp:66:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] long int rng_seed; ^~~~~~~~ data.cpp: In member function ‘void weakarg::Data::subset(std::vector, int)’: data.cpp:169:14: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] if (num<=0 &&seed>=0 || num<0) return; ~~~~~~~^~~~~~~~~ data.cpp:177:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<, int>::value_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-metropolis.o `test -f 'metropolis.cpp' || echo './'`metropolis.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveaddedge.o `test -f 'moveaddedge.cpp' || echo './'`moveaddedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveageclonal.o `test -f 'moveageclonal.cpp' || echo './'`moveageclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movedelta.o `test -f 'movedelta.cpp' || echo './'`movedelta.cpp moveageclonal.cpp: In member function ‘virtual int weakarg::MoveAgeClonal::move()’: moveageclonal.cpp:126:43: warning: ‘movetemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(movetemp!=NULL) delete(movetemp); ^ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveedgechange.o `test -f 'moveedgechange.cpp' || echo './'`moveedgechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveregraftclonal.o `test -f 'moveregraftclonal.cpp' || echo './'`moveregraftclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveremedge.o `test -f 'moveremedge.cpp' || echo './'`moveremedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moverho.o `test -f 'moverho.cpp' || echo './'`moverho.cpp moveregraftclonal.cpp: In member function ‘virtual int weakarg::MoveRegraftClonal::move()’: moveregraftclonal.cpp:43:9: warning: unused variable ‘notmovednode’ [-Wunused-variable] int notmovednode=rectree->otherChild(origfather,which); ^~~~~~~~~~~~ moveregraftclonal.cpp: In member function ‘void weakarg::MoveRegraftClonal::regraft(int, int)’: moveregraftclonal.cpp:157:54: warning: unused variable ‘wnode’ [-Wunused-variable] Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); ^~~~~ moveregraftclonal.cpp:157:86: warning: unused variable ‘wtonode’ [-Wunused-variable] Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movescaletree.o `test -f 'movescaletree.cpp' || echo './'`movescaletree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movegreedytree.o `test -f 'movegreedytree.cpp' || echo './'`movegreedytree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movesitechange.o `test -f 'movesitechange.cpp' || echo './'`movesitechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetheta.o `test -f 'movetheta.cpp' || echo './'`movetheta.cpp movegreedytree.cpp: In member function ‘void weakarg::MoveGreedyTree::applyChanges(std::vector)’: movegreedytree.cpp:230:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] int whichto=-1,tmp; ^~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetimechange.o `test -f 'movetimechange.cpp' || echo './'`movetimechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-mpiutils.o `test -f 'mpiutils.cpp' || echo './'`mpiutils.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-node.o `test -f 'node.cpp' || echo './'`node.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-param.o `test -f 'param.cpp' || echo './'`param.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-recedge.o `test -f 'recedge.cpp' || echo './'`recedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rectree.o `test -f 'rectree.cpp' || echo './'`rectree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-tree.o `test -f 'tree.cpp' || echo './'`tree.cpp rectree.cpp: In member function ‘int weakarg::RecTree::moveNodeTime(int, int*, double, int, std::vector*, std::vector*)’: rectree.cpp:1112:7: warning: variable ‘newfather’ set but not used [-Wunused-but-set-variable] int newfather,notnewfather; ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-weakarg.o `test -f 'weakarg.cpp' || echo './'`weakarg.cpp weakarg.cpp:40:13: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] ret.append(__DATE__); ^~~~~~~~ weakarg.cpp:42:13: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] ret.append(__TIME__); ^~~~~~~~ weakarg.cpp: In function ‘int main(int, char**)’: weakarg.cpp:127:10: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] bool setregions=false; ^~~~~~~~~~ weakarg.cpp: In function ‘std::vector weakarg::readInputFiles(weakarg::Data*&, weakarg::RecTree*&, std::vector&, std::vector&, std::vector&, std::vector >, std::__cxx11::string, int)’: weakarg.cpp:342:7: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] bool setregions=false; ^~~~~~~~~~ weakarg.cpp: In function ‘bool weakarg::initializeTree(weakarg::Data*&, weakarg::RecTree*&, std::vector >, std::__cxx11::string)’: weakarg.cpp:404:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); ^~ weakarg.cpp:404:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); ^ g++ -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o warg warg-data.o warg-rng.o warg-wargxml.o warg-move.o warg-metropolis.o warg-moveaddedge.o warg-moveageclonal.o warg-movedelta.o warg-moveedgechange.o warg-moveregraftclonal.o warg-moveremedge.o warg-moverho.o warg-movescaletree.o warg-movegreedytree.o warg-movesitechange.o warg-movetheta.o warg-movetimechange.o warg-mpiutils.o warg-node.o warg-param.o warg-recedge.o warg-rectree.o warg-tree.o warg-weakarg.o -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making all in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' dh_auto_test -a -O--sourcedirectory=warg cd warg && make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/warg' Making check in src make[2]: Entering directory '/<>/warg/src' make profilerun.sh make[3]: Entering directory '/<>/warg/src' make[3]: 'profilerun.sh' is up to date. make[3]: Leaving directory '/<>/warg/src' make check-TESTS make[3]: Entering directory '/<>/warg/src' make[4]: Entering directory '/<>/warg/src' PASS: profilerun.sh ============================================================================ Testsuite summary for clonalorigin 0.0.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/warg/src' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making check in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=warg dh_testroot -a -O--sourcedirectory=warg dh_prep -a -O--sourcedirectory=warg dh_auto_install -a -O--sourcedirectory=warg cd warg && make -j4 install DESTDIR=/<>/debian/clonalorigin AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/warg' Making install in src make[2]: Entering directory '/<>/warg/src' make[3]: Entering directory '/<>/warg/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c warg '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making install in scripts make[2]: Entering directory '/<>/warg/scripts' make[3]: Entering directory '/<>/warg/scripts' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c blocksplit.pl computeMedians.pl makeMauveWargFile.pl '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/scripts' make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[3]: Entering directory '/<>/warg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/warg' make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rename 's/\.pl//' debian/clonalorigin/usr/bin/*.pl make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=warg dh_installchangelogs -a -O--sourcedirectory=warg dh_installman -a -O--sourcedirectory=warg dh_installinit -a -O--sourcedirectory=warg dh_perl -a -O--sourcedirectory=warg dh_link -a -O--sourcedirectory=warg dh_strip_nondeterminism -a -O--sourcedirectory=warg dh_compress -a -O--sourcedirectory=warg dh_fixperms -a -O--sourcedirectory=warg dh_missing -a -O--sourcedirectory=warg dh_strip -a -O--sourcedirectory=warg dh_makeshlibs -a -O--sourcedirectory=warg dh_shlibdeps -a -O--sourcedirectory=warg dh_installdeb -a -O--sourcedirectory=warg dh_gencontrol -a -O--sourcedirectory=warg dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=warg dh_builddeb -a -O--sourcedirectory=warg INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing clonalorigin (in debian/clonalorigin); do_strip: , oemstrip: pkgstriptranslations: processing clonalorigin-dbgsym (in debian/.debhelper/clonalorigin/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clonalorigin/DEBIAN/control, package clonalorigin, directory debian/clonalorigin pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalorigin ... pkgstripfiles: processing control file: debian/.debhelper/clonalorigin/dbgsym-root/DEBIAN/control, package clonalorigin-dbgsym, directory debian/.debhelper/clonalorigin/dbgsym-root pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalorigin-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalorigin/clonalorigin-dbgsym_1.0-3_arm64.deb'. dpkg-deb: building package 'clonalorigin' in '../clonalorigin_1.0-3_arm64.deb'. Renaming clonalorigin-dbgsym_1.0-3_arm64.deb to clonalorigin-dbgsym_1.0-3_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalorigin_1.0-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190102-2343 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalorigin_1.0-3_arm64.changes: --------------------------------- Format: 1.8 Date: Wed, 02 Jan 2019 15:29:03 +0100 Source: clonalorigin Binary: clonalorigin Architecture: arm64 Version: 1.0-3 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clonalorigin - inference of homologous recombination in bacteria using whole gen Changes: clonalorigin (1.0-3) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 Checksums-Sha1: eed072764316b42a9cd05bb5fdd0353ad750ba20 2156344 clonalorigin-dbgsym_1.0-3_arm64.ddeb 2aa4ccef4990f13fcc1b19a8e558e3967d8d9ca2 4953 clonalorigin_1.0-3_arm64.buildinfo b37fefe097410fb3196a9fd73d5a93e840cf8ddd 144564 clonalorigin_1.0-3_arm64.deb Checksums-Sha256: 6763807183f79135e32141587c5b694d1e33297b6e13749a66bce738e2621da2 2156344 clonalorigin-dbgsym_1.0-3_arm64.ddeb 3fde424fc409c7cb867f75d6b7538580d29014b108119f488cf934337ea9d276 4953 clonalorigin_1.0-3_arm64.buildinfo 962798046281e2834791e5f0707443e466d30ab5c2df1ea5fde59e187aad6070 144564 clonalorigin_1.0-3_arm64.deb Files: 2703efb53d4f1fb66b8311768f2820e3 2156344 debug optional clonalorigin-dbgsym_1.0-3_arm64.ddeb e3e264e9a3e88dbdea56ac0260aa467d 4953 science optional clonalorigin_1.0-3_arm64.buildinfo 835945b69e8afd3e3b023509ad641fa1 144564 science optional clonalorigin_1.0-3_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalorigin_1.0-3_arm64.deb ---------------------------- new debian package, version 2.0. size 144564 bytes: control archive=1204 bytes. 1151 bytes, 21 lines control 507 bytes, 8 lines md5sums Package: clonalorigin Version: 1.0-3 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 342 Depends: libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgsl23 (>= 2.5), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/xavierdidelot/clonalorigin Description: inference of homologous recombination in bacteria using whole genome sequences Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally known as recombination. The mechanisms by which recombination takes place have been studied extensively in the laboratory but much remains to be understood concerning how, when and where recombination takes place within natural populations of bacteria and how it helps them to adapt to new environments. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry. drwxr-xr-x root/root 0 2019-01-02 14:29 ./ drwxr-xr-x root/root 0 2019-01-02 14:29 ./usr/ drwxr-xr-x root/root 0 2019-01-02 14:29 ./usr/bin/ -rwxr-xr-x root/root 430 2019-01-02 14:29 ./usr/bin/blocksplit lrwxrwxrwx root/root 0 2019-01-02 14:29 ./usr/bin/clonalorigin -> warg -rwxr-xr-x root/root 3039 2019-01-02 14:29 ./usr/bin/computeMedians -rwxr-xr-x root/root 1111 2019-01-02 14:29 ./usr/bin/makeMauveWargFile -rwxr-xr-x root/root 326920 2019-01-02 14:29 ./usr/bin/warg drwxr-xr-x root/root 0 2019-01-02 14:29 ./usr/share/ drwxr-xr-x root/root 0 2019-01-02 14:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-02 14:29 ./usr/share/doc/clonalorigin/ -rw-r--r-- root/root 504 2019-01-02 14:29 ./usr/share/doc/clonalorigin/README.Debian -rw-r--r-- root/root 288 2019-01-02 14:29 ./usr/share/doc/clonalorigin/changelog.Debian.gz -rw-r--r-- root/root 514 2019-01-02 14:29 ./usr/share/doc/clonalorigin/copyright drwxr-xr-x root/root 0 2019-01-02 14:29 ./usr/share/man/ drwxr-xr-x root/root 0 2019-01-02 14:29 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2019-01-02 14:29 ./usr/share/man/man1/clonalorigin.1.gz -> warg.1.gz -rw-r--r-- root/root 1604 2019-01-02 14:29 ./usr/share/man/man1/warg.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 38704 Build-Time: 1630 Distribution: disco-proposed Host Architecture: arm64 Install-Time: 18 Job: clonalorigin_1.0-3.dsc Machine Architecture: arm64 Package: clonalorigin Package-Time: 1650 Source-Version: 1.0-3 Space: 38704 Status: successful Version: 1.0-3 -------------------------------------------------------------------------------- Finished at 20190102-2343 Build needed 00:27:30, 38704k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16225028 Scanning for processes to kill in build PACKAGEBUILD-16225028