https://launchpad.net/ubuntu/+source/clonalorigin/1.0-3build1/+build/18869160 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-019 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:00:43 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 22 Mar 17:17:50 ntpdate[1847]: adjust time server 10.211.37.1 offset 0.011852 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18869160 --image-type chroot /home/buildd/filecache-default/1ac0229cc48d8f596a1790116aa52d00551197b1 Creating target for build PACKAGEBUILD-18869160 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18869160 Starting target for build PACKAGEBUILD-18869160 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18869160 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18869160 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18869160 Updating target for build PACKAGEBUILD-18869160 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main s390x Packages [924 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe s390x Packages [8244 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5150 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main s390x Packages [98.4 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [43.6 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe s390x Packages [378 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [271 kB] Fetched 16.3 MB in 4s (4647 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libapt-pkg6.0 libcrypt-dev libcrypt1 libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base procps readline-common sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux zlib1g 117 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. Need to get 60.3 MB of archives. After this operation, 51.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main s390x gcc-10-base s390x 10-20200321-1ubuntu1 [18.7 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libgmp10 s390x 2:6.2.0+dfsg-4 [247 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x libisl22 s390x 0.22.1-1 [545 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main s390x libcc1-0 s390x 10-20200321-1ubuntu1 [39.4 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libctf-nobfd0 s390x 2.34-5ubuntu1 [44.0 kB] Get:6 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libctf0 s390x 2.34-5ubuntu1 [43.5 kB] Get:7 http://ftpmaster.internal/ubuntu focal-proposed/main s390x binutils-s390x-linux-gnu s390x 2.34-5ubuntu1 [1443 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libbinutils s390x 2.34-5ubuntu1 [307 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main s390x binutils-common s390x 2.34-5ubuntu1 [207 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gcc-9-base s390x 9.3.0-6ubuntu1 [19.2 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libgcc-s1 s390x 10-20200321-1ubuntu1 [30.4 kB] Get:12 http://ftpmaster.internal/ubuntu focal/universe s390x libgcc1 s390x 1:10-20200321-1ubuntu1 [30.3 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main s390x libgomp1 s390x 10-20200321-1ubuntu1 [114 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main s390x libitm1 s390x 10-20200321-1ubuntu1 [28.6 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main s390x libatomic1 s390x 10-20200321-1ubuntu1 [8376 B] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libasan5 s390x 9.3.0-6ubuntu1 [361 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x libubsan1 s390x 10-20200321-1ubuntu1 [155 kB] Get:18 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libgcc-9-dev s390x 9.3.0-6ubuntu1 [698 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x libcrypt1 s390x 1:4.4.10-10ubuntu4 [80.7 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x libc6 s390x 2.31-0ubuntu6 [2274 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main s390x libc-dev-bin s390x 2.31-0ubuntu6 [63.9 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libc-bin s390x 2.31-0ubuntu6 [533 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x libc6-dev s390x 2.31-0ubuntu6 [2029 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x libcrypt-dev s390x 1:4.4.10-10ubuntu4 [107 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main s390x binutils s390x 2.34-5ubuntu1 [3344 B] Get:26 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libstdc++-9-dev s390x 9.3.0-6ubuntu1 [1677 kB] Get:27 http://ftpmaster.internal/ubuntu focal-proposed/main s390x g++-9 s390x 9.3.0-6ubuntu1 [6607 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gcc-9 s390x 9.3.0-6ubuntu1 [6464 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main s390x cpp-9 s390x 9.3.0-6ubuntu1 [5728 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x libstdc++6 s390x 10-20200321-1ubuntu1 [517 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main s390x zlib1g s390x 1:1.2.11.dfsg-2ubuntu1 [61.3 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x linux-libc-dev s390x 5.4.0-18.22 [1156 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x base-files s390x 11ubuntu4 [60.1 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x debianutils s390x 4.9.1 [85.7 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main s390x bash s390x 5.0-6ubuntu1 [620 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main s390x bsdutils s390x 1:2.34-0.1ubuntu8 [61.2 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main s390x findutils s390x 4.7.0-1ubuntu1 [323 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main s390x grep s390x 3.4-1 [156 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main s390x gzip s390x 1.10-0ubuntu4 [95.8 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main s390x hostname s390x 3.23 [11.1 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main s390x login s390x 1:4.8.1-1ubuntu3 [219 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main s390x libncurses6 s390x 6.2-0ubuntu2 [94.9 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main s390x libtinfo6 s390x 6.2-0ubuntu2 [84.8 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-bin s390x 6.2-0ubuntu2 [170 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main s390x libncursesw6 s390x 6.2-0ubuntu2 [122 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main s390x perl-modules-5.30 all 5.30.0-9build1 [2737 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main s390x libperl5.30 s390x 5.30.0-9build1 [3778 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main s390x perl s390x 5.30.0-9build1 [224 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main s390x perl-base s390x 5.30.0-9build1 [1422 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main s390x bzip2 s390x 1.0.8-2 [33.3 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main s390x libbz2-1.0 s390x 1.0.8-2 [32.6 kB] Get:52 http://ftpmaster.internal/ubuntu focal/main s390x libdb5.3 s390x 5.3.28+dfsg1-0.6ubuntu2 [613 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main s390x libblkid1 s390x 2.34-0.1ubuntu8 [127 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main s390x libuuid1 s390x 2.34-0.1ubuntu8 [20.1 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main s390x libfdisk1 s390x 2.34-0.1ubuntu8 [160 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main s390x libpcre2-8-0 s390x 10.34-7 [109 kB] Get:57 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libselinux1 s390x 3.0-1build2 [65.6 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main s390x libmount1 s390x 2.34-0.1ubuntu8 [137 kB] Get:59 http://ftpmaster.internal/ubuntu focal/main s390x libsmartcols1 s390x 2.34-0.1ubuntu8 [93.2 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main s390x fdisk s390x 2.34-0.1ubuntu8 [114 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main s390x util-linux s390x 2.34-0.1ubuntu8 [984 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main s390x libdebconfclient0 s390x 0.251ubuntu1 [5972 B] Get:63 http://ftpmaster.internal/ubuntu focal/main s390x base-passwd s390x 3.5.47 [46.7 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main s390x ncurses-base all 6.2-0ubuntu2 [18.7 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main s390x lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main s390x sysvinit-utils s390x 2.96-2.1ubuntu1 [20.6 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main s390x libgpg-error0 s390x 1.37-1 [55.0 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main s390x libgcrypt20 s390x 1.8.5-5ubuntu1 [351 kB] Get:69 http://ftpmaster.internal/ubuntu focal/main s390x liblz4-1 s390x 1.9.2-2 [53.8 kB] Get:70 http://ftpmaster.internal/ubuntu focal-proposed/main s390x systemd-sysv s390x 245.2-1ubuntu1 [9524 B] Get:71 http://ftpmaster.internal/ubuntu focal/main s390x libacl1 s390x 2.2.53-6 [18.4 kB] Get:72 http://ftpmaster.internal/ubuntu focal/main s390x libapparmor1 s390x 2.13.3-7ubuntu2 [32.8 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main s390x libaudit-common all 1:2.8.5-2ubuntu6 [3936 B] Get:74 http://ftpmaster.internal/ubuntu focal/main s390x libcap-ng0 s390x 0.7.9-2.1build1 [10.8 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main s390x libaudit1 s390x 1:2.8.5-2ubuntu6 [37.2 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main s390x libcap2 s390x 1:2.32-1 [15.9 kB] Get:77 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libudev1 s390x 245.2-1ubuntu1 [73.1 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main s390x libdevmapper1.02.1 s390x 2:1.02.167-1ubuntu1 [122 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main s390x libjson-c4 s390x 0.13.1+dfsg-7 [28.0 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main s390x libssl1.1 s390x 1.1.1d-2ubuntu6 [987 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main s390x libcryptsetup12 s390x 2:2.2.2-3ubuntu2 [160 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main s390x libnettle7 s390x 3.5.1+really3.5.1-2 [124 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main s390x libhogweed5 s390x 3.5.1+really3.5.1-2 [136 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main s390x libffi7 s390x 3.3-3 [16.5 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main s390x libp11-kit0 s390x 0.23.20-1build1 [174 kB] Get:86 http://ftpmaster.internal/ubuntu focal/main s390x libtasn1-6 s390x 4.16.0-2 [37.1 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main s390x libgnutls30 s390x 3.6.11.1-2ubuntu2 [683 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main s390x libip4tc2 s390x 1.8.4-3ubuntu2 [18.3 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main s390x libkmod2 s390x 27-1ubuntu2 [41.6 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main s390x libpam0g s390x 1.3.1-5ubuntu4 [52.9 kB] Get:91 http://ftpmaster.internal/ubuntu focal/main s390x libseccomp2 s390x 2.4.3-0ubuntu2 [38.3 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main s390x mount s390x 2.34-0.1ubuntu8 [110 kB] Get:93 http://ftpmaster.internal/ubuntu focal-proposed/main s390x systemd s390x 245.2-1ubuntu1 [3444 kB] Get:94 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libsystemd0 s390x 245.2-1ubuntu1 [249 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main s390x libzstd1 s390x 1.4.4+dfsg-3 [217 kB] Get:96 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libapt-pkg6.0 s390x 2.0.0 [772 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main s390x libapt-pkg5.90 s390x 1.9.10 [791 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main s390x gpgv s390x 2.2.19-3ubuntu2 [186 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main s390x ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:100 http://ftpmaster.internal/ubuntu focal-proposed/main s390x apt s390x 2.0.0 [1246 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules-bin s390x 1.3.1-5ubuntu4 [36.5 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main s390x libpam-modules s390x 1.3.1-5ubuntu4 [242 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main s390x logsave s390x 1.45.5-2ubuntu1 [10.0 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main s390x libext2fs2 s390x 1.45.5-2ubuntu1 [177 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main s390x e2fsprogs s390x 1.45.5-2ubuntu1 [507 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main s390x libattr1 s390x 1:2.4.48-5 [12.4 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main s390x libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:108 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libpcre3 s390x 2:8.39-12build1 [157 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main s390x libsepol1 s390x 3.0-1 [227 kB] Get:110 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libsemanage-common all 3.0-1build2 [9792 B] Get:111 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libsemanage1 s390x 3.0-1build2 [79.9 kB] Get:112 http://ftpmaster.internal/ubuntu focal/main s390x passwd s390x 1:4.8.1-1ubuntu3 [779 kB] Get:113 http://ftpmaster.internal/ubuntu focal/main s390x libcom-err2 s390x 1.45.5-2ubuntu1 [9384 B] Get:114 http://ftpmaster.internal/ubuntu focal/main s390x libprocps8 s390x 2:3.3.16-1ubuntu2 [31.0 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main s390x libss2 s390x 1.45.5-2ubuntu1 [11.1 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main s390x mawk s390x 1.3.4.20200120-2 [91.8 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main s390x procps s390x 2:3.3.16-1ubuntu2 [225 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main s390x sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main s390x readline-common all 8.0-4 [53.5 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main s390x libreadline8 s390x 8.0-4 [127 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main s390x libsqlite3-0 s390x 3.31.1-3 [512 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main s390x openssl s390x 1.1.1d-2ubuntu6 [609 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main s390x tzdata all 2019c-3ubuntu1 [294 kB] Get:124 http://ftpmaster.internal/ubuntu focal/main s390x libpng16-16 s390x 1.6.37-2 [174 kB] Get:125 http://ftpmaster.internal/ubuntu focal/main s390x advancecomp s390x 2.1-2.1build1 [177 kB] Get:126 http://ftpmaster.internal/ubuntu focal/main s390x libassuan0 s390x 2.5.3-7ubuntu2 [32.7 kB] Get:127 http://ftpmaster.internal/ubuntu focal/main s390x gpg s390x 2.2.19-3ubuntu2 [446 kB] Get:128 http://ftpmaster.internal/ubuntu focal/main s390x gpgconf s390x 2.2.19-3ubuntu2 [119 kB] Get:129 http://ftpmaster.internal/ubuntu focal/main s390x gpg-agent s390x 2.2.19-3ubuntu2 [218 kB] Get:130 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile-bin s390x 1.16-1.1 [11.4 kB] Get:131 http://ftpmaster.internal/ubuntu focal/main s390x liblockfile1 s390x 1.16-1.1 [6476 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 60.3 MB in 1s (71.4 MB/s) Selecting previously unselected package gcc-10-base:s390x. (Reading database ... 12530 files and directories currently installed.) Preparing to unpack .../gcc-10-base_10-20200321-1ubuntu1_s390x.deb ... Unpacking gcc-10-base:s390x (10-20200321-1ubuntu1) ... Setting up gcc-10-base:s390x (10-20200321-1ubuntu1) ... (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.0+dfsg-4_s390x.deb ... Unpacking libgmp10:s390x (2:6.2.0+dfsg-4) over (2:6.1.2+dfsg-4) ... Setting up libgmp10:s390x (2:6.2.0+dfsg-4) ... Selecting previously unselected package libisl22:s390x. (Reading database ... 12536 files and directories currently installed.) Preparing to unpack .../0-libisl22_0.22.1-1_s390x.deb ... Unpacking libisl22:s390x (0.22.1-1) ... Preparing to unpack .../1-libcc1-0_10-20200321-1ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (10-20200321-1ubuntu1) over (9.2.1-9ubuntu2) ... Selecting previously unselected package libctf-nobfd0:s390x. 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Setting up binutils-common:s390x (2.34-5ubuntu1) ... Setting up linux-libc-dev:s390x (5.4.0-18.22) ... Setting up libctf-nobfd0:s390x (2.34-5ubuntu1) ... Setting up libcom-err2:s390x (1.45.5-2ubuntu1) ... Setting up libassuan0:s390x (2.5.3-7ubuntu2) ... Setting up libgomp1:s390x (10-20200321-1ubuntu1) ... Setting up bzip2 (1.0.8-2) ... Setting up libcap2:s390x (1:2.32-1) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 22 17:18:10 UTC 2020. Universal Time is now: Sun Mar 22 17:18:10 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:s390x (9.3.0-6ubuntu1) ... Setting up libncurses6:s390x (6.2-0ubuntu2) ... Setting up libpng16-16:s390x (1.6.37-2) ... Setting up libatomic1:s390x (10-20200321-1ubuntu1) ... Setting up libss2:s390x (1.45.5-2ubuntu1) ... Setting up logsave (1.45.5-2ubuntu1) ... Setting up libubsan1:s390x (10-20200321-1ubuntu1) ... Setting up advancecomp (2.1-2.1build1) ... Setting up libdevmapper1.02.1:s390x (2:1.02.167-1ubuntu1) ... Setting up mount (2.34-0.1ubuntu8) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:s390x (1:4.4.10-10ubuntu4) ... Setting up libperl5.30:s390x (5.30.0-9build1) ... Setting up libisl22:s390x (0.22.1-1) ... Setting up mawk (1.3.4.20200120-2) ... Setting up liblockfile1:s390x (1.16-1.1) ... Setting up libjson-c4:s390x (0.13.1+dfsg-7) ... Setting up libbinutils:s390x (2.34-5ubuntu1) ... Setting up libc-dev-bin (2.31-0ubuntu6) ... Setting up openssl (1.1.1d-2ubuntu6) ... Setting up readline-common (8.0-4) ... Setting up libcc1-0:s390x (10-20200321-1ubuntu1) ... Setting up libprocps8:s390x (2:3.3.16-1ubuntu2) ... Setting up libitm1:s390x (10-20200321-1ubuntu1) ... Setting up libkmod2:s390x (27-1ubuntu2) ... Setting up libctf0:s390x (2.34-5ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.34-5ubuntu1) ... Setting up libreadline8:s390x (8.0-4) ... Setting up e2fsprogs (1.45.5-2ubuntu1) ... Setting up binutils (2.34-5ubuntu1) ... Setting up libgcc-9-dev:s390x (9.3.0-6ubuntu1) ... Setting up perl (5.30.0-9build1) ... Setting up procps (2:3.3.16-1ubuntu2) ... Removing obsolete conffile /etc/sysctl.d/protect-links.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up gpgconf (2.2.19-3ubuntu2) ... Setting up cpp-9 (9.3.0-6ubuntu1) ... Setting up libc6-dev:s390x (2.31-0ubuntu6) ... Setting up libcryptsetup12:s390x (2:2.2.2-3ubuntu2) ... Setting up gpg (2.2.19-3ubuntu2) ... Setting up gcc-9 (9.3.0-6ubuntu1) ... Setting up gpg-agent (2.2.19-3ubuntu2) ... Installing new version of config file /etc/logcheck/ignore.d.server/gpg-agent ... Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket -> /usr/lib/systemd/user/gpg-agent-browser.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket -> /usr/lib/systemd/user/gpg-agent-extra.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket -> /usr/lib/systemd/user/gpg-agent-ssh.socket. Created symlink /etc/systemd/user/sockets.target.wants/gpg-agent.socket -> /usr/lib/systemd/user/gpg-agent.socket. Setting up libstdc++-9-dev:s390x (9.3.0-6ubuntu1) ... Setting up systemd (245.2-1ubuntu1) ... Installing new version of config file /etc/dhcp/dhclient-enter-hooks.d/resolved ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up g++-9 (9.3.0-6ubuntu1) ... Setting up systemd-sysv (245.2-1ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18869160 s390x focal-proposed -c chroot:build-PACKAGEBUILD-18869160 --arch=s390x --dist=focal-proposed --nolog clonalorigin_1.0-3build1.dsc Initiating build PACKAGEBUILD-18869160 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-176-generic #206-Ubuntu SMP Fri Feb 28 05:00:43 UTC 2020 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-019.buildd +==============================================================================+ | clonalorigin 1.0-3build1 (s390x) 22 Mar 2020 17:18 | +==============================================================================+ Package: clonalorigin Version: 1.0-3build1 Source Version: 1.0-3build1 Distribution: focal-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/clonalorigin-jzeBRh/clonalorigin-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/clonalorigin-jzeBRh' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18869160/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalorigin_1.0-3build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-IaWma6/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-IaWma6/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IaWma6/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-IaWma6/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IaWma6/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-IaWma6/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-IaWma6/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14553 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libgsl-dev, rename Filtered Build-Depends: debhelper (>= 11~), libgsl-dev, rename dpkg-deb: building package 'sbuild-build-depends-clonalorigin-dummy' in '/<>/resolver-1YThuW/apt_archive/sbuild-build-depends-clonalorigin-dummy.deb'. Ign:1 copy:/<>/resolver-1YThuW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-1YThuW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-1YThuW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-1YThuW/apt_archive ./ Sources [227 B] Get:5 copy:/<>/resolver-1YThuW/apt_archive ./ Packages [546 B] Fetched 2892 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clonalorigin build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename sbuild-build-depends-clonalorigin-dummy 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After this operation, 77.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-1YThuW/apt_archive ./ sbuild-build-depends-clonalorigin-dummy 0.invalid.0 [872 B] Get:2 http://ftpmaster.internal/ubuntu focal/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libuchardet0 s390x 0.0.6-3build1 [64.6 kB] Get:5 http://ftpmaster.internal/ubuntu focal-proposed/main s390x groff-base s390x 1.22.4-4build1 [813 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main s390x libpipeline1 s390x 1.5.2-2build1 [26.5 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main s390x man-db s390x 2.9.1-1 [1101 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main s390x libmagic-mgc s390x 1:5.38-4 [219 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main s390x libmagic1 s390x 1:5.38-4 [72.8 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main s390x file s390x 1:5.38-4 [23.1 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main s390x libelf1 s390x 0.176-1.1build1 [47.5 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main s390x libglib2.0-0 s390x 2.64.1-1 [1180 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libicu66 s390x 66.1-2ubuntu2 [8263 kB] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/main s390x libxml2 s390x 2.9.10+dfsg-4build1 [658 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main s390x m4 s390x 1.4.18-4 [196 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main s390x autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main s390x automake all 1:1.16.1-4ubuntu6 [522 kB] Get:21 http://ftpmaster.internal/ubuntu focal-proposed/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main s390x libtool all 2.4.6-13 [161 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main s390x dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main s390x libdebhelper-perl all 12.9ubuntu1 [62.0 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main s390x libarchive-zip-perl all 1.67-2 [90.5 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu focal/main s390x libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main s390x dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:29 http://ftpmaster.internal/ubuntu focal/main s390x dwz s390x 0.13-5 [146 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:31 http://ftpmaster.internal/ubuntu focal-proposed/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main s390x po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main s390x debhelper all 12.9ubuntu1 [869 kB] Get:35 http://ftpmaster.internal/ubuntu focal/universe s390x libgslcblas0 s390x 2.5+dfsg-6 [72.7 kB] Get:36 http://ftpmaster.internal/ubuntu focal/universe s390x libgsl23 s390x 2.5+dfsg-6 [747 kB] Get:37 http://ftpmaster.internal/ubuntu focal/universe s390x libgsl-dev s390x 2.5+dfsg-6 [934 kB] Get:38 http://ftpmaster.internal/ubuntu focal/universe s390x rename all 1.10-1 [16.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.6 MB in 0s (80.4 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 14553 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_s390x.deb ... Unpacking libbsd0:s390x (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4build1_s390x.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_s390x.deb ... Unpacking man-db (2.9.1-1) ... 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Selecting previously unselected package rename. Preparing to unpack .../36-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) ... Selecting previously unselected package sbuild-build-depends-clonalorigin-dummy. Preparing to unpack .../37-sbuild-build-depends-clonalorigin-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.2-2build1) ... Setting up libgslcblas0:s390x (2.5+dfsg-6) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:s390x (2.64.1-1) ... No schema files found: doing nothing. Setting up libicu66:s390x (66.1-2ubuntu2) ... Setting up libdebhelper-perl (12.9ubuntu1) ... Setting up libmagic1:s390x (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.38-4) ... Setting up autotools-dev (20180224.1) ... Setting up libgsl23:s390x (2.5+dfsg-6) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:s390x (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1build1) ... Setting up libxml2:s390x (2.9.10+dfsg-4build1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libtool (2.4.6-13) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.9ubuntu1) ... Setting up sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu6) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-176-generic s390x (s390x) Toolchain package versions: binutils_2.34-5ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.3.0-6ubuntu1 gcc-9_9.3.0-6ubuntu1 libc6-dev_2.31-0ubuntu6 libstdc++-9-dev_9.3.0-6ubuntu1 libstdc++6_10-20200321-1ubuntu1 linux-libc-dev_5.4.0-18.22 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.0 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-5ubuntu1 binutils-common_2.34-5ubuntu1 binutils-s390x-linux-gnu_2.34-5ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu8 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.3.0-6ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu8 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.2.1-3.1ubuntu1 g++-9_9.3.0-6ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200321-1ubuntu1 gcc-9_9.3.0-6ubuntu1 gcc-9-base_9.3.0-6ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapparmor1_2.13.3-7ubuntu2 libapt-pkg5.90_1.9.10 libapt-pkg6.0_2.0.0 libarchive-zip-perl_1.67-2 libargon2-1_0~20171227-0.2 libasan5_9.3.0-6ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200321-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-5ubuntu1 libblkid1_2.34-0.1ubuntu8 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu6 libc-dev-bin_2.31-0ubuntu6 libc6_2.31-0ubuntu6 libc6-dev_2.31-0ubuntu6 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200321-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-5ubuntu1 libctf0_2.34-5ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu8 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-6ubuntu1 libgcc-s1_10-20200321-1ubuntu1 libgcc1_1:10-20200321-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200321-1ubuntu1 libgpg-error0_1.37-1 libgsl-dev_2.5+dfsg-6 libgsl23_2.5+dfsg-6 libgslcblas0_2.5+dfsg-6 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu2 libisl21_0.21-2 libisl22_0.22.1-1 libitm1_10-20200321-1ubuntu1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu8 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-0ubuntu2 libncursesw6_6.2-0ubuntu2 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu2 libreadline8_8.0-4 libseccomp2_2.4.3-0ubuntu2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu8 libsqlite3-0_3.31.1-3 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-6ubuntu1 libstdc++6_10-20200321-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.2-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-13 libubsan1_10-20200321-1ubuntu1 libuchardet0_0.0.6-3build1 libudev1_245.2-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu8 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-18.22 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu3 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu8 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu3 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 readline-common_8.0-4 rename_1.10-1 sbuild-build-depends-clonalorigin-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.2-1ubuntu1 systemd-sysv_245.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-6 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu8 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Mar 22 16:24:42 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalorigin_1.0-3build1.dsc dpkg-source: info: extracting clonalorigin in clonalorigin-1.0 dpkg-source: info: unpacking clonalorigin_1.0.orig.tar.gz dpkg-source: info: unpacking clonalorigin_1.0-3build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying portability.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18869160 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18869160 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18869160 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalorigin dpkg-buildpackage: info: source version 1.0-3build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --sourcedirectory=warg dh_auto_clean -O--sourcedirectory=warg dh_autoreconf_clean -O--sourcedirectory=warg dh_clean -O--sourcedirectory=warg debian/rules build-arch dh build-arch --sourcedirectory=warg dh_update_autotools_config -a -O--sourcedirectory=warg dh_autoreconf -a -O--sourcedirectory=warg configure.ac:41: installing 'config/compile' configure.ac:9: installing 'config/install-sh' configure.ac:9: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' dh_auto_configure -a -O--sourcedirectory=warg cd warg && ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for floor... no checking for pow... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a -O--sourcedirectory=warg cd warg && make -j4 make[1]: Entering directory '/<>/warg' Making all in src make[2]: Entering directory '/<>/warg/src' make all-am make[3]: Entering directory '/<>/warg/src' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-data.o `test -f 'data.cpp' || echo './'`data.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rng.o `test -f 'rng.cpp' || echo './'`rng.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-wargxml.o `test -f 'wargxml.cpp' || echo './'`wargxml.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-move.o `test -f 'move.cpp' || echo './'`move.cpp rng.cpp: In function ‘long unsigned int weakarg::makerng(bool)’: rng.cpp:16:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 16 | long int rng_seed; | ^~~~~~~~ rng.cpp: In function ‘int weakarg::loadrng(std::string)’: rng.cpp:66:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 66 | long int rng_seed; | ^~~~~~~~ data.cpp: In constructor ‘weakarg::Data::Data(std::string)’: data.cpp:50:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | }else if(getNumber(tmpname)!=which){ | ~~~~~~~~~~~~~~~~~~^~~~~~~ data.cpp: In member function ‘void weakarg::Data::subset(std::vector, int)’: data.cpp:169:14: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 169 | if (num<=0 &&seed>=0 || num<0) return; | ~~~~~~~^~~~~~~~~ data.cpp:177:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<, int>::value_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-metropolis.o `test -f 'metropolis.cpp' || echo './'`metropolis.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveaddedge.o `test -f 'moveaddedge.cpp' || echo './'`moveaddedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveageclonal.o `test -f 'moveageclonal.cpp' || echo './'`moveageclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movedelta.o `test -f 'movedelta.cpp' || echo './'`movedelta.cpp moveageclonal.cpp: In member function ‘virtual int weakarg::MoveAgeClonal::move()’: moveageclonal.cpp:126:43: warning: ‘movetemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 126 | if(movetemp!=NULL) delete(movetemp); | ^ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveedgechange.o `test -f 'moveedgechange.cpp' || echo './'`moveedgechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveregraftclonal.o `test -f 'moveregraftclonal.cpp' || echo './'`moveregraftclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveremedge.o `test -f 'moveremedge.cpp' || echo './'`moveremedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moverho.o `test -f 'moverho.cpp' || echo './'`moverho.cpp moveregraftclonal.cpp: In member function ‘virtual int weakarg::MoveRegraftClonal::move()’: moveregraftclonal.cpp:43:9: warning: unused variable ‘notmovednode’ [-Wunused-variable] 43 | int notmovednode=rectree->otherChild(origfather,which); | ^~~~~~~~~~~~ moveregraftclonal.cpp: In member function ‘void weakarg::MoveRegraftClonal::regraft(int, int)’: moveregraftclonal.cpp:157:54: warning: unused variable ‘wnode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~ moveregraftclonal.cpp:157:86: warning: unused variable ‘wtonode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movescaletree.o `test -f 'movescaletree.cpp' || echo './'`movescaletree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movegreedytree.o `test -f 'movegreedytree.cpp' || echo './'`movegreedytree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movesitechange.o `test -f 'movesitechange.cpp' || echo './'`movesitechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetheta.o `test -f 'movetheta.cpp' || echo './'`movetheta.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetimechange.o `test -f 'movetimechange.cpp' || echo './'`movetimechange.cpp movegreedytree.cpp: In member function ‘void weakarg::MoveGreedyTree::applyChanges(std::vector)’: movegreedytree.cpp:230:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 230 | int whichto=-1,tmp; | ^~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-mpiutils.o `test -f 'mpiutils.cpp' || echo './'`mpiutils.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-node.o `test -f 'node.cpp' || echo './'`node.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-param.o `test -f 'param.cpp' || echo './'`param.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-recedge.o `test -f 'recedge.cpp' || echo './'`recedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rectree.o `test -f 'rectree.cpp' || echo './'`rectree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-tree.o `test -f 'tree.cpp' || echo './'`tree.cpp rectree.cpp: In member function ‘int weakarg::RecTree::moveNodeTime(int, int*, double, int, std::vector*, std::vector*)’: rectree.cpp:1112:7: warning: variable ‘newfather’ set but not used [-Wunused-but-set-variable] 1112 | int newfather,notnewfather; | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-weakarg.o `test -f 'weakarg.cpp' || echo './'`weakarg.cpp weakarg.cpp:40:13: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 40 | ret.append(__DATE__); | ^~~~~~~~ weakarg.cpp:42:13: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 42 | ret.append(__TIME__); | ^~~~~~~~ weakarg.cpp: In function ‘int main(int, char**)’: weakarg.cpp:127:10: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 127 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘std::vector weakarg::readInputFiles(weakarg::Data*&, weakarg::RecTree*&, std::vector&, std::vector&, std::vector&, std::vector >, std::string, int)’: weakarg.cpp:342:7: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 342 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘bool weakarg::initializeTree(weakarg::Data*&, weakarg::RecTree*&, std::vector >, std::string)’: weakarg.cpp:404:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^~ weakarg.cpp:404:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^ g++ -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o warg warg-data.o warg-rng.o warg-wargxml.o warg-move.o warg-metropolis.o warg-moveaddedge.o warg-moveageclonal.o warg-movedelta.o warg-moveedgechange.o warg-moveregraftclonal.o warg-moveremedge.o warg-moverho.o warg-movescaletree.o warg-movegreedytree.o warg-movesitechange.o warg-movetheta.o warg-movetimechange.o warg-mpiutils.o warg-node.o warg-param.o warg-recedge.o warg-rectree.o warg-tree.o warg-weakarg.o -L/usr/lib/s390x-linux-gnu -lgsl -lgslcblas -lm make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making all in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' dh_auto_test -a -O--sourcedirectory=warg cd warg && make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/warg' Making check in src make[2]: Entering directory '/<>/warg/src' make profilerun.sh make[3]: Entering directory '/<>/warg/src' make[3]: 'profilerun.sh' is up to date. make[3]: Leaving directory '/<>/warg/src' make check-TESTS make[3]: Entering directory '/<>/warg/src' make[4]: Entering directory '/<>/warg/src' PASS: profilerun.sh ============================================================================ Testsuite summary for clonalorigin 0.0.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/warg/src' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making check in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=warg dh_testroot -a -O--sourcedirectory=warg dh_prep -a -O--sourcedirectory=warg dh_auto_install -a -O--sourcedirectory=warg cd warg && make -j4 install DESTDIR=/<>/debian/clonalorigin AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/warg' Making install in src make[2]: Entering directory '/<>/warg/src' make[3]: Entering directory '/<>/warg/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c warg '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making install in scripts make[2]: Entering directory '/<>/warg/scripts' make[3]: Entering directory '/<>/warg/scripts' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c blocksplit.pl computeMedians.pl makeMauveWargFile.pl '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/scripts' make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[3]: Entering directory '/<>/warg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/warg' make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rename 's/\.pl//' debian/clonalorigin/usr/bin/*.pl make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=warg dh_installchangelogs -a -O--sourcedirectory=warg dh_installman -a -O--sourcedirectory=warg dh_installinit -a -O--sourcedirectory=warg dh_perl -a -O--sourcedirectory=warg dh_link -a -O--sourcedirectory=warg dh_strip_nondeterminism -a -O--sourcedirectory=warg dh_compress -a -O--sourcedirectory=warg dh_fixperms -a -O--sourcedirectory=warg dh_missing -a -O--sourcedirectory=warg dh_strip -a -O--sourcedirectory=warg dh_makeshlibs -a -O--sourcedirectory=warg dh_shlibdeps -a -O--sourcedirectory=warg dh_installdeb -a -O--sourcedirectory=warg dh_gencontrol -a -O--sourcedirectory=warg dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=warg dh_builddeb -a -O--sourcedirectory=warg INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing clonalorigin-dbgsym (in debian/.debhelper/clonalorigin/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing clonalorigin (in debian/clonalorigin); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clonalorigin/DEBIAN/control, package clonalorigin, directory debian/clonalorigin pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalorigin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalorigin' in '../clonalorigin_1.0-3build1_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clonalorigin/dbgsym-root/DEBIAN/control, package clonalorigin-dbgsym, directory debian/.debhelper/clonalorigin/dbgsym-root dpkg-deb: building package 'clonalorigin-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalorigin/clonalorigin-dbgsym_1.0-3build1_s390x.deb'. Renaming clonalorigin-dbgsym_1.0-3build1_s390x.deb to clonalorigin-dbgsym_1.0-3build1_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalorigin_1.0-3build1_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200322-1726 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build1_s390x.changes: --------------------------------------- Format: 1.8 Date: Sun, 22 Mar 2020 16:36:15 +0100 Source: clonalorigin Binary: clonalorigin Architecture: s390x Version: 1.0-3build1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: clonalorigin - inference of homologous recombination in bacteria using whole gen Changes: clonalorigin (1.0-3build1) focal; urgency=medium . * No-change rebuild for libgcc-s1 package name change. Checksums-Sha1: 90b6b680348481b406b1e16fe80bd9963e3bee63 2324184 clonalorigin-dbgsym_1.0-3build1_s390x.ddeb 86314a0aded9bc690d3e4e48e8a781a983a2004f 5289 clonalorigin_1.0-3build1_s390x.buildinfo 674dc2729ecc904319f684fc01bdd37f12933724 146580 clonalorigin_1.0-3build1_s390x.deb Checksums-Sha256: 361c4edf529a4577c764a3df4501969f903de249130bbd68a450bfb4a7ed4545 2324184 clonalorigin-dbgsym_1.0-3build1_s390x.ddeb 34e2180394d58841ac79eb8c25c455aeca1db0ba3d5298853dfe0f8a56f90e4f 5289 clonalorigin_1.0-3build1_s390x.buildinfo 1e879e197b0c17815d8366d28ef914ab899bf8bc90efbeafe1b6cdadadb92abe 146580 clonalorigin_1.0-3build1_s390x.deb Files: e65d55a94281a7a4b09e85b7239e2e01 2324184 debug optional clonalorigin-dbgsym_1.0-3build1_s390x.ddeb b8d1b2e95c40189e53003549dd4b33bb 5289 science optional clonalorigin_1.0-3build1_s390x.buildinfo 8228899647e15898a854c58ddd57900b 146580 science optional clonalorigin_1.0-3build1_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build1_s390x.deb ---------------------------------- new debian package, version 2.0. size 146580 bytes: control archive=1204 bytes. 1155 bytes, 21 lines control 507 bytes, 8 lines md5sums Package: clonalorigin Version: 1.0-3build1 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 418 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl23 (>= 2.5), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://github.com/xavierdidelot/clonalorigin Description: inference of homologous recombination in bacteria using whole genome sequences Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally known as recombination. The mechanisms by which recombination takes place have been studied extensively in the laboratory but much remains to be understood concerning how, when and where recombination takes place within natural populations of bacteria and how it helps them to adapt to new environments. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry. drwxr-xr-x root/root 0 2020-03-22 15:36 ./ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/bin/ -rwxr-xr-x root/root 430 2020-03-22 15:36 ./usr/bin/blocksplit lrwxrwxrwx root/root 0 2020-03-22 15:36 ./usr/bin/clonalorigin -> warg -rwxr-xr-x root/root 3039 2020-03-22 15:36 ./usr/bin/computeMedians -rwxr-xr-x root/root 1111 2020-03-22 15:36 ./usr/bin/makeMauveWargFile -rwxr-xr-x root/root 404712 2020-03-22 15:36 ./usr/bin/warg drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/doc/clonalorigin/ -rw-r--r-- root/root 504 2019-01-02 14:29 ./usr/share/doc/clonalorigin/README.Debian -rw-r--r-- root/root 373 2020-03-22 15:36 ./usr/share/doc/clonalorigin/changelog.Debian.gz -rw-r--r-- root/root 514 2019-01-02 14:29 ./usr/share/doc/clonalorigin/copyright drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/man/ drwxr-xr-x root/root 0 2020-03-22 15:36 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-03-22 15:36 ./usr/share/man/man1/clonalorigin.1.gz -> warg.1.gz -rw-r--r-- root/root 1604 2020-03-22 15:36 ./usr/share/man/man1/warg.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 41296 Build-Time: 494 Distribution: focal-proposed Host Architecture: s390x Install-Time: 5 Job: clonalorigin_1.0-3build1.dsc Machine Architecture: s390x Package: clonalorigin Package-Time: 500 Source-Version: 1.0-3build1 Space: 41296 Status: successful Version: 1.0-3build1 -------------------------------------------------------------------------------- Finished at 20200322-1726 Build needed 00:08:20, 41296k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=s390x PACKAGEBUILD-18869160 Scanning for processes to kill in build PACKAGEBUILD-18869160