https://launchpad.net/ubuntu/+source/clonalorigin/1.0-3build2/+build/19274791 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-029 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:48:41 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 May 22:08:06 ntpdate[1873]: adjust time server 10.211.37.1 offset -0.013303 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19274791 --image-type chroot /home/buildd/filecache-default/bb4dbf4bd068f4f4da4a9ba56413a8aa8579df72 Creating target for build PACKAGEBUILD-19274791 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19274791 Starting target for build PACKAGEBUILD-19274791 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19274791 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19274791 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19274791 Updating target for build PACKAGEBUILD-19274791 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main arm64 Packages [940 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe arm64 Packages [8548 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5173 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 Packages [72.6 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [40.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe arm64 Packages [378 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [270 kB] Fetched 16.5 MB in 6s (2649 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp-9 dash debconf e2fsprogs g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapt-pkg6.0 libasan5 libatomic1 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 liblsan0 libncurses6 libncursesw6 libperl5.30 libprocps8 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 linux-libc-dev logsave make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd sysvinit-utils 57 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 42.6 MB of archives. After this operation, 58.4 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libcrypt-dev arm64 1:4.4.15-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libcrypt1 arm64 1:4.4.15-1ubuntu1 [82.5 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main arm64 base-files arm64 11ubuntu7 [60.0 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libperl5.30 arm64 5.30.0-10 [3772 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 perl arm64 5.30.0-10 [224 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 perl-base arm64 5.30.0-10 [1390 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main arm64 debconf all 1.5.74 [121 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main arm64 dash arm64 0.5.10.2-7 [84.2 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main arm64 ncurses-bin arm64 6.2-1 [167 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main arm64 ncurses-base all 6.2-1 [18.7 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main arm64 sysvinit-utils arm64 2.96-3ubuntu1 [20.4 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main arm64 libatomic1 arm64 10-20200425-1ubuntu2 [9192 B] Get:14 http://ftpmaster.internal/ubuntu groovy/main arm64 libubsan1 arm64 10-20200425-1ubuntu2 [126 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main arm64 libtsan0 arm64 10-20200425-1ubuntu2 [302 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main arm64 liblsan0 arm64 10-20200425-1ubuntu2 [130 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main arm64 libitm1 arm64 10-20200425-1ubuntu2 [23.8 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main arm64 libgomp1 arm64 10-20200425-1ubuntu2 [92.1 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main arm64 gcc-10-base arm64 10-20200425-1ubuntu2 [19.3 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main arm64 libgcc-s1 arm64 10-20200425-1ubuntu2 [34.7 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main arm64 libcc1-0 arm64 10-20200425-1ubuntu2 [37.2 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main arm64 libstdc++6 arm64 10-20200425-1ubuntu2 [462 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd-sysv arm64 245.5-2ubuntu1 [10.3 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd-timesyncd arm64 245.5-2ubuntu1 [26.2 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main arm64 libacl1 arm64 2.2.53-8 [17.9 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main arm64 libcap2 arm64 1:2.33-1 [16.8 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main arm64 libcryptsetup12 arm64 2:2.3.1-1ubuntu1 [176 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main arm64 libidn2-0 arm64 2.3.0-1 [51.9 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main arm64 systemd arm64 245.5-2ubuntu1 [3487 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main arm64 libsystemd0 arm64 245.5-2ubuntu1 [249 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main arm64 libudev1 arm64 245.5-2ubuntu1 [71.5 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 libapt-pkg6.0 arm64 2.1.0 [763 kB] Get:33 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 gpgv arm64 2.2.20-1ubuntu1 [184 kB] Get:34 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 apt arm64 2.1.0 [1239 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main arm64 logsave arm64 1.45.6-1ubuntu1 [10.2 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main arm64 libext2fs2 arm64 1.45.6-1ubuntu1 [177 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main arm64 e2fsprogs arm64 1.45.6-1ubuntu1 [504 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main arm64 libncurses6 arm64 6.2-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main arm64 libncursesw6 arm64 6.2-1 [120 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main arm64 libtinfo6 arm64 6.2-1 [81.2 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main arm64 libcom-err2 arm64 1.45.6-1ubuntu1 [9336 B] Get:42 http://ftpmaster.internal/ubuntu groovy/main arm64 libprocps8 arm64 2:3.3.16-4ubuntu1 [31.6 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main arm64 libss2 arm64 1.45.6-1ubuntu1 [10.7 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main arm64 procps arm64 2:3.3.16-4ubuntu1 [229 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main arm64 libsqlite3-0 arm64 3.31.1-5 [505 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main arm64 libasan5 arm64 9.3.0-11ubuntu2 [365 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main arm64 g++-9 arm64 9.3.0-11ubuntu2 [6818 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main arm64 gcc-9 arm64 9.3.0-11ubuntu2 [6692 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main arm64 libstdc++-9-dev arm64 9.3.0-11ubuntu2 [1679 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main arm64 libgcc-9-dev arm64 9.3.0-11ubuntu2 [917 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main arm64 cpp-9 arm64 9.3.0-11ubuntu2 [5965 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main arm64 gcc-9-base arm64 9.3.0-11ubuntu2 [19.4 kB] Get:53 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 gpg arm64 2.2.20-1ubuntu1 [443 kB] Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 gpgconf arm64 2.2.20-1ubuntu1 [117 kB] Get:55 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 gpg-agent arm64 2.2.20-1ubuntu1 [216 kB] Get:56 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 linux-libc-dev arm64 5.4.0-29.33 [1079 kB] Get:57 http://ftpmaster.internal/ubuntu groovy-proposed/main arm64 make arm64 4.2.1-2 [154 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.6 MB in 2s (28.2 MB/s) (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.15-1ubuntu1_arm64.deb ... Unpacking libcrypt-dev:arm64 (1:4.4.15-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Preparing to unpack .../libcrypt1_1%3a4.4.15-1ubuntu1_arm64.deb ... Unpacking libcrypt1:arm64 (1:4.4.15-1ubuntu1) over (1:4.4.10-10ubuntu4) ... Setting up libcrypt1:arm64 (1:4.4.15-1ubuntu1) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu7_arm64.deb ... Unpacking base-files (11ubuntu7) over (11ubuntu5) ... Setting up base-files (11ubuntu7) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../libperl5.30_5.30.0-10_arm64.deb ... Unpacking libperl5.30:arm64 (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl_5.30.0-10_arm64.deb ... Unpacking perl (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl-base_5.30.0-10_arm64.deb ... Unpacking perl-base (5.30.0-10) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-10) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../perl-modules-5.30_5.30.0-10_all.deb ... Unpacking perl-modules-5.30 (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../debconf_1.5.74_all.deb ... Unpacking debconf (1.5.74) over (1.5.73) ... Setting up debconf (1.5.74) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-7_arm64.deb ... Unpacking dash (0.5.10.2-7) over (0.5.10.2-6) ... Setting up dash (0.5.10.2-7) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2-1_arm64.deb ... Unpacking ncurses-bin (6.2-1) over (6.2-0ubuntu2) ... Setting up ncurses-bin (6.2-1) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2-1_all.deb ... Unpacking ncurses-base (6.2-1) over (6.2-0ubuntu2) ... Setting up ncurses-base (6.2-1) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-3ubuntu1_arm64.deb ... Unpacking sysvinit-utils (2.96-3ubuntu1) over (2.96-2.1ubuntu1) ... Setting up sysvinit-utils (2.96-3ubuntu1) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../0-libatomic1_10-20200425-1ubuntu2_arm64.deb ... Unpacking libatomic1:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../1-libubsan1_10-20200425-1ubuntu2_arm64.deb ... Unpacking libubsan1:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../2-libtsan0_10-20200425-1ubuntu2_arm64.deb ... Unpacking libtsan0:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../3-liblsan0_10-20200425-1ubuntu2_arm64.deb ... Unpacking liblsan0:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../4-libitm1_10-20200425-1ubuntu2_arm64.deb ... Unpacking libitm1:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../5-libgomp1_10-20200425-1ubuntu2_arm64.deb ... Unpacking libgomp1:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../6-gcc-10-base_10-20200425-1ubuntu2_arm64.deb ... Unpacking gcc-10-base:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Setting up gcc-10-base:arm64 (10-20200425-1ubuntu2) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200425-1ubuntu2_arm64.deb ... Unpacking libgcc-s1:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Setting up libgcc-s1:arm64 (10-20200425-1ubuntu2) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../libcc1-0_10-20200425-1ubuntu2_arm64.deb ... Unpacking libcc1-0:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Preparing to unpack .../libstdc++6_10-20200425-1ubuntu2_arm64.deb ... Unpacking libstdc++6:arm64 (10-20200425-1ubuntu2) over (10-20200411-0ubuntu1) ... Setting up libstdc++6:arm64 (10-20200425-1ubuntu2) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../systemd-sysv_245.5-2ubuntu1_arm64.deb ... Unpacking systemd-sysv (245.5-2ubuntu1) over (245.4-4ubuntu3) ... Preparing to unpack .../systemd-timesyncd_245.5-2ubuntu1_arm64.deb ... Unpacking systemd-timesyncd (245.5-2ubuntu1) over (245.4-4ubuntu3) ... Preparing to unpack .../libacl1_2.2.53-8_arm64.deb ... Unpacking libacl1:arm64 (2.2.53-8) over (2.2.53-6) ... Setting up libacl1:arm64 (2.2.53-8) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.33-1_arm64.deb ... Unpacking libcap2:arm64 (1:2.33-1) over (1:2.32-1) ... Preparing to unpack .../libcryptsetup12_2%3a2.3.1-1ubuntu1_arm64.deb ... Unpacking libcryptsetup12:arm64 (2:2.3.1-1ubuntu1) over (2:2.2.2-3ubuntu2) ... Preparing to unpack .../libidn2-0_2.3.0-1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.0-1) over (2.2.0-2) ... Setting up libidn2-0:arm64 (2.3.0-1) ... (Reading database ... 12809 files and directories currently installed.) Preparing to unpack .../systemd_245.5-2ubuntu1_arm64.deb ... Unpacking systemd (245.5-2ubuntu1) over (245.4-4ubuntu3) ... Preparing to unpack .../libsystemd0_245.5-2ubuntu1_arm64.deb ... Unpacking libsystemd0:arm64 (245.5-2ubuntu1) over (245.4-4ubuntu3) ... Setting up libsystemd0:arm64 (245.5-2ubuntu1) ... (Reading database ... 12807 files and directories currently installed.) Preparing to unpack .../libudev1_245.5-2ubuntu1_arm64.deb ... Unpacking libudev1:arm64 (245.5-2ubuntu1) over (245.4-4ubuntu3) ... Setting up libudev1:arm64 (245.5-2ubuntu1) ... (Reading database ... 12807 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.1.0_arm64.deb ... Unpacking libapt-pkg6.0:arm64 (2.1.0) over (2.0.2) ... Setting up libapt-pkg6.0:arm64 (2.1.0) ... (Reading database ... 12807 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.20-1ubuntu1_arm64.deb ... Unpacking gpgv (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Setting up gpgv (2.2.20-1ubuntu1) ... (Reading database ... 12807 files and directories currently installed.) Preparing to unpack .../archives/apt_2.1.0_arm64.deb ... Unpacking apt (2.1.0) over (2.0.2) ... Setting up apt (2.1.0) ... (Reading database ... 12807 files and directories currently installed.) Preparing to unpack .../logsave_1.45.6-1ubuntu1_arm64.deb ... Unpacking logsave (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../libext2fs2_1.45.6-1ubuntu1_arm64.deb ... Unpacking libext2fs2:arm64 (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Setting up libext2fs2:arm64 (1.45.6-1ubuntu1) ... (Reading database ... 12807 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.6-1ubuntu1_arm64.deb ... Unpacking e2fsprogs (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../libncurses6_6.2-1_arm64.deb ... Unpacking libncurses6:arm64 (6.2-1) over (6.2-0ubuntu2) ... Preparing to unpack .../libncursesw6_6.2-1_arm64.deb ... Unpacking libncursesw6:arm64 (6.2-1) over (6.2-0ubuntu2) ... Preparing to unpack .../libtinfo6_6.2-1_arm64.deb ... Unpacking libtinfo6:arm64 (6.2-1) over (6.2-0ubuntu2) ... Setting up libtinfo6:arm64 (6.2-1) ... (Reading database ... 12807 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.45.6-1ubuntu1_arm64.deb ... Unpacking libcom-err2:arm64 (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../01-libprocps8_2%3a3.3.16-4ubuntu1_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.16-4ubuntu1) over (2:3.3.16-1ubuntu2) ... Preparing to unpack .../02-libss2_1.45.6-1ubuntu1_arm64.deb ... Unpacking libss2:arm64 (1.45.6-1ubuntu1) over (1.45.5-2ubuntu1) ... Preparing to unpack .../03-procps_2%3a3.3.16-4ubuntu1_arm64.deb ... Unpacking procps (2:3.3.16-4ubuntu1) over (2:3.3.16-1ubuntu2) ... Preparing to unpack .../04-libsqlite3-0_3.31.1-5_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.31.1-5) over (3.31.1-4) ... Preparing to unpack .../05-libasan5_9.3.0-11ubuntu2_arm64.deb ... Unpacking libasan5:arm64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../06-g++-9_9.3.0-11ubuntu2_arm64.deb ... Unpacking g++-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../07-gcc-9_9.3.0-11ubuntu2_arm64.deb ... Unpacking gcc-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../08-libstdc++-9-dev_9.3.0-11ubuntu2_arm64.deb ... Unpacking libstdc++-9-dev:arm64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../09-libgcc-9-dev_9.3.0-11ubuntu2_arm64.deb ... Unpacking libgcc-9-dev:arm64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../10-cpp-9_9.3.0-11ubuntu2_arm64.deb ... Unpacking cpp-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../11-gcc-9-base_9.3.0-11ubuntu2_arm64.deb ... Unpacking gcc-9-base:arm64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../12-gpg_2.2.20-1ubuntu1_arm64.deb ... Unpacking gpg (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../13-gpgconf_2.2.20-1ubuntu1_arm64.deb ... Unpacking gpgconf (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../14-gpg-agent_2.2.20-1ubuntu1_arm64.deb ... Unpacking gpg-agent (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../15-linux-libc-dev_5.4.0-29.33_arm64.deb ... Unpacking linux-libc-dev:arm64 (5.4.0-29.33) over (5.4.0-26.30) ... Preparing to unpack .../16-make_4.2.1-2_arm64.deb ... Unpacking make (4.2.1-2) over (4.2.1-1.2) ... Setting up perl-modules-5.30 (5.30.0-10) ... Setting up libsqlite3-0:arm64 (3.31.1-5) ... Setting up linux-libc-dev:arm64 (5.4.0-29.33) ... Setting up libcom-err2:arm64 (1.45.6-1ubuntu1) ... Setting up libgomp1:arm64 (10-20200425-1ubuntu2) ... Setting up libcap2:arm64 (1:2.33-1) ... Setting up make (4.2.1-2) ... Setting up libncurses6:arm64 (6.2-1) ... Setting up libatomic1:arm64 (10-20200425-1ubuntu2) ... Setting up libss2:arm64 (1.45.6-1ubuntu1) ... Setting up libncursesw6:arm64 (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libubsan1:arm64 (10-20200425-1ubuntu2) ... Setting up libcrypt-dev:arm64 (1:4.4.15-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:arm64 (5.30.0-10) ... Setting up libcryptsetup12:arm64 (2:2.3.1-1ubuntu1) ... Setting up libcc1-0:arm64 (10-20200425-1ubuntu2) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up liblsan0:arm64 (10-20200425-1ubuntu2) ... Setting up libprocps8:arm64 (2:3.3.16-4ubuntu1) ... Setting up libitm1:arm64 (10-20200425-1ubuntu2) ... Setting up gcc-9-base:arm64 (9.3.0-11ubuntu2) ... Setting up libtsan0:arm64 (10-20200425-1ubuntu2) ... Setting up gpg-agent (2.2.20-1ubuntu1) ... Setting up e2fsprogs (1.45.6-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libasan5:arm64 (9.3.0-11ubuntu2) ... Setting up perl (5.30.0-10) ... Setting up procps (2:3.3.16-4ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up libgcc-9-dev:arm64 (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:arm64 (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Setting up systemd-timesyncd (245.5-2ubuntu1) ... Setting up systemd (245.5-2ubuntu1) ... Initializing machine ID from KVM UUID. Setting up systemd-sysv (245.5-2ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19274791 arm64 groovy-proposed -c chroot:build-PACKAGEBUILD-19274791 --arch=arm64 --dist=groovy-proposed --nolog clonalorigin_1.0-3build2.dsc Initiating build PACKAGEBUILD-19274791 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:48:41 UTC 2020 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-029.buildd +==============================================================================+ | clonalorigin 1.0-3build2 (arm64) 07 May 2020 22:08 | +==============================================================================+ Package: clonalorigin Version: 1.0-3build2 Source Version: 1.0-3build2 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/clonalorigin-Dwz1dt/clonalorigin-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/clonalorigin-Dwz1dt' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19274791/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalorigin_1.0-3build2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-8Zu9CS/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-8Zu9CS/apt_archive ./ InRelease Get:2 copy:/<>/resolver-8Zu9CS/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-8Zu9CS/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-8Zu9CS/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-8Zu9CS/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (75.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-8Zu9CS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (29.9 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12806 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libgsl-dev, rename Filtered Build-Depends: debhelper (>= 11~), libgsl-dev, rename dpkg-deb: building package 'sbuild-build-depends-clonalorigin-dummy' in '/<>/resolver-34aZek/apt_archive/sbuild-build-depends-clonalorigin-dummy.deb'. Ign:1 copy:/<>/resolver-34aZek/apt_archive ./ InRelease Get:2 copy:/<>/resolver-34aZek/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-34aZek/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-34aZek/apt_archive ./ Sources [227 B] Get:5 copy:/<>/resolver-34aZek/apt_archive ./ Packages [546 B] Fetched 2892 B in 0s (82.4 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clonalorigin build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename sbuild-build-depends-clonalorigin-dummy 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After this operation, 76.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-34aZek/apt_archive ./ sbuild-build-depends-clonalorigin-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main arm64 libbsd0 arm64 0.10.0-1 [43.7 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main arm64 bsdmainutils arm64 11.1.2ubuntu3 [179 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main arm64 libuchardet0 arm64 0.0.6-3build1 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main arm64 groff-base arm64 1.22.4-5 [797 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main arm64 libpipeline1 arm64 1.5.2-2build1 [26.1 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main arm64 man-db arm64 2.9.1-1 [1095 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main arm64 libmagic-mgc arm64 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main arm64 libmagic1 arm64 1:5.38-4 [71.7 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main arm64 file arm64 1:5.38-4 [23.3 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main arm64 libelf1 arm64 0.176-1.1build1 [44.2 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main arm64 libglib2.0-0 arm64 2.64.2-1 [1197 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main arm64 libicu66 arm64 66.1-2ubuntu2 [8357 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main arm64 libxml2 arm64 2.9.10+dfsg-5 [572 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main arm64 gettext-base arm64 0.19.8.1-10build1 [48.2 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main arm64 m4 arm64 1.4.18-4 [194 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main arm64 autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main arm64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main arm64 autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main arm64 libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main arm64 dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main arm64 libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main arm64 libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main arm64 dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main arm64 dwz arm64 0.13-5 [134 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main arm64 libcroco3 arm64 0.6.13-1 [77.1 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main arm64 gettext arm64 0.19.8.1-10build1 [850 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main arm64 po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main arm64 debhelper all 13ubuntu1 [877 kB] Get:35 http://ftpmaster.internal/ubuntu groovy-proposed/universe arm64 libgslcblas0 arm64 2.6+dfsg-2 [56.2 kB] Get:36 http://ftpmaster.internal/ubuntu groovy-proposed/universe arm64 libgsl25 arm64 2.6+dfsg-2 [787 kB] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/universe arm64 libgsl-dev arm64 2.6+dfsg-2 [1007 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/universe arm64 rename all 1.10-1 [16.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.7 MB in 1s (25.4 MB/s) Selecting previously unselected package libbsd0:arm64. (Reading database ... 12806 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_arm64.deb ... Unpacking libbsd0:arm64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_arm64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_arm64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.38-4_arm64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../07-libmagic1_1%3a5.38-4_arm64.deb ... Unpacking libmagic1:arm64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.38-4_arm64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../09-libelf1_0.176-1.1build1_arm64.deb ... Unpacking libelf1:arm64 (0.176-1.1build1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../10-libglib2.0-0_2.64.2-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.64.2-1) ... Selecting previously unselected package libicu66:arm64. Preparing to unpack .../11-libicu66_66.1-2ubuntu2_arm64.deb ... Unpacking libicu66:arm64 (66.1-2ubuntu2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../12-libxml2_2.9.10+dfsg-5_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.19.8.1-10build1_arm64.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../14-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-4_arm64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.1-4ubuntu6_all.deb ... Unpacking automake (1:1.16.1-4ubuntu6) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.19.8.1-10build1_all.deb ... Unpacking autopoint (0.19.8.1-10build1) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../22-libdebhelper-perl_13ubuntu1_all.deb ... Unpacking libdebhelper-perl (13ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../23-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../24-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.8.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.8.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.8.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.8.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.13-5_arm64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../28-libcroco3_0.6.13-1_arm64.deb ... Unpacking libcroco3:arm64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-10build1_arm64.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13ubuntu1_all.deb ... Unpacking debhelper (13ubuntu1) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../33-libgslcblas0_2.6+dfsg-2_arm64.deb ... Unpacking libgslcblas0:arm64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:arm64. Preparing to unpack .../34-libgsl25_2.6+dfsg-2_arm64.deb ... Unpacking libgsl25:arm64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../35-libgsl-dev_2.6+dfsg-2_arm64.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Selecting previously unselected package rename. Preparing to unpack .../36-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) ... Selecting previously unselected package sbuild-build-depends-clonalorigin-dummy. Preparing to unpack .../37-sbuild-build-depends-clonalorigin-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Setting up libpipeline1:arm64 (1.5.2-2build1) ... Setting up libgslcblas0:arm64 (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libgsl25:arm64 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libicu66:arm64 (66.1-2ubuntu2) ... Setting up libdebhelper-perl (13ubuntu1) ... Setting up libmagic1:arm64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.38-4) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:arm64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:arm64 (0.10.0-1) ... Setting up libelf1:arm64 (0.176-1.1build1) ... Setting up libxml2:arm64 (2.9.10+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:arm64 (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-178-generic arm64 (aarch64) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-11ubuntu2 gcc-9_9.3.0-11ubuntu2 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 linux-libc-dev_5.4.0-29.33 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.0 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-aarch64-linux-gnu_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-11ubuntu2 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-11ubuntu2 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200425-1ubuntu2 gcc-9_9.3.0-11ubuntu2 gcc-9-base_9.3.0-11ubuntu2 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_2.13.3-7ubuntu5 libapt-pkg6.0_2.1.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-11ubuntu2 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200425-1ubuntu2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.33-1 libcc1-0_10-20200425-1ubuntu2 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1ubuntu1 libcrypt1_1:4.4.15-1ubuntu1 libcryptsetup12_2:2.3.1-1ubuntu1 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu9 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-11ubuntu2 libgcc-s1_10-20200425-1ubuntu2 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200425-1ubuntu2 libgpg-error0_1.37-1 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10-20200425-1ubuntu2 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200425-1ubuntu2 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-4ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu1 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-5 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 libsub-override-perl_0.09-2 libsystemd0_245.5-2ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200425-1ubuntu2 libubsan1_10-20200425-1ubuntu2 libuchardet0_0.0.6-3build1 libudev1_245.5-2ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-29.33 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-4ubuntu1 readline-common_8.0-4 rename_1.10-1 sbuild-build-depends-clonalorigin-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.5-2ubuntu1 systemd-sysv_245.5-2ubuntu1 systemd-timesyncd_245.5-2ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu May 7 21:55:55 2020 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalorigin_1.0-3build2.dsc dpkg-source: info: extracting clonalorigin in clonalorigin-1.0 dpkg-source: info: unpacking clonalorigin_1.0.orig.tar.gz dpkg-source: info: unpacking clonalorigin_1.0-3build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying portability.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19274791 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19274791 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19274791 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalorigin dpkg-buildpackage: info: source version 1.0-3build2 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --sourcedirectory=warg dh_auto_clean -O--sourcedirectory=warg dh_autoreconf_clean -O--sourcedirectory=warg dh_clean -O--sourcedirectory=warg debian/rules build-arch dh build-arch --sourcedirectory=warg dh_update_autotools_config -a -O--sourcedirectory=warg dh_autoreconf -a -O--sourcedirectory=warg configure.ac:41: installing 'config/compile' configure.ac:9: installing 'config/install-sh' configure.ac:9: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' dh_auto_configure -a -O--sourcedirectory=warg cd warg && ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for floor... no checking for pow... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a -O--sourcedirectory=warg cd warg && make -j4 make[1]: Entering directory '/<>/warg' Making all in src make[2]: Entering directory '/<>/warg/src' make all-am make[3]: Entering directory '/<>/warg/src' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-data.o `test -f 'data.cpp' || echo './'`data.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rng.o `test -f 'rng.cpp' || echo './'`rng.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-wargxml.o `test -f 'wargxml.cpp' || echo './'`wargxml.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-move.o `test -f 'move.cpp' || echo './'`move.cpp rng.cpp: In function ‘long unsigned int weakarg::makerng(bool)’: rng.cpp:16:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 16 | long int rng_seed; | ^~~~~~~~ rng.cpp: In function ‘int weakarg::loadrng(std::string)’: rng.cpp:66:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 66 | long int rng_seed; | ^~~~~~~~ rng.cpp: In function ‘long unsigned int weakarg::seedrng(long unsigned int)’: rng.cpp:40:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 40 | fread(&tseed,sizeof(tseed),1,devrandom); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ data.cpp: In constructor ‘weakarg::Data::Data(std::string)’: data.cpp:50:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | }else if(getNumber(tmpname)!=which){ | ~~~~~~~~~~~~~~~~~~^~~~~~~ data.cpp: In member function ‘void weakarg::Data::subset(std::vector, int)’: data.cpp:169:14: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 169 | if (num<=0 &&seed>=0 || num<0) return; | ~~~~~~~^~~~~~~~~ data.cpp:177:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<, int>::value_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-metropolis.o `test -f 'metropolis.cpp' || echo './'`metropolis.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveaddedge.o `test -f 'moveaddedge.cpp' || echo './'`moveaddedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveageclonal.o `test -f 'moveageclonal.cpp' || echo './'`moveageclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movedelta.o `test -f 'movedelta.cpp' || echo './'`movedelta.cpp moveageclonal.cpp: In member function ‘virtual int weakarg::MoveAgeClonal::move()’: moveageclonal.cpp:126:43: warning: ‘movetemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 126 | if(movetemp!=NULL) delete(movetemp); | ^ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveedgechange.o `test -f 'moveedgechange.cpp' || echo './'`moveedgechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveregraftclonal.o `test -f 'moveregraftclonal.cpp' || echo './'`moveregraftclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveremedge.o `test -f 'moveremedge.cpp' || echo './'`moveremedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moverho.o `test -f 'moverho.cpp' || echo './'`moverho.cpp moveregraftclonal.cpp: In member function ‘virtual int weakarg::MoveRegraftClonal::move()’: moveregraftclonal.cpp:43:9: warning: unused variable ‘notmovednode’ [-Wunused-variable] 43 | int notmovednode=rectree->otherChild(origfather,which); | ^~~~~~~~~~~~ moveregraftclonal.cpp: In member function ‘void weakarg::MoveRegraftClonal::regraft(int, int)’: moveregraftclonal.cpp:157:54: warning: unused variable ‘wnode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~ moveregraftclonal.cpp:157:86: warning: unused variable ‘wtonode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movescaletree.o `test -f 'movescaletree.cpp' || echo './'`movescaletree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movegreedytree.o `test -f 'movegreedytree.cpp' || echo './'`movegreedytree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movesitechange.o `test -f 'movesitechange.cpp' || echo './'`movesitechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetheta.o `test -f 'movetheta.cpp' || echo './'`movetheta.cpp movegreedytree.cpp: In member function ‘void weakarg::MoveGreedyTree::applyChanges(std::vector)’: movegreedytree.cpp:230:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 230 | int whichto=-1,tmp; | ^~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetimechange.o `test -f 'movetimechange.cpp' || echo './'`movetimechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-mpiutils.o `test -f 'mpiutils.cpp' || echo './'`mpiutils.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-node.o `test -f 'node.cpp' || echo './'`node.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-param.o `test -f 'param.cpp' || echo './'`param.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-recedge.o `test -f 'recedge.cpp' || echo './'`recedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rectree.o `test -f 'rectree.cpp' || echo './'`rectree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-tree.o `test -f 'tree.cpp' || echo './'`tree.cpp rectree.cpp: In member function ‘int weakarg::RecTree::moveNodeTime(int, int*, double, int, std::vector*, std::vector*)’: rectree.cpp:1112:7: warning: variable ‘newfather’ set but not used [-Wunused-but-set-variable] 1112 | int newfather,notnewfather; | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-weakarg.o `test -f 'weakarg.cpp' || echo './'`weakarg.cpp weakarg.cpp:40:13: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 40 | ret.append(__DATE__); | ^~~~~~~~ weakarg.cpp:42:13: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 42 | ret.append(__TIME__); | ^~~~~~~~ weakarg.cpp: In function ‘int main(int, char**)’: weakarg.cpp:127:10: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 127 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘std::vector weakarg::readInputFiles(weakarg::Data*&, weakarg::RecTree*&, std::vector&, std::vector&, std::vector&, std::vector >, std::string, int)’: weakarg.cpp:342:7: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 342 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘bool weakarg::initializeTree(weakarg::Data*&, weakarg::RecTree*&, std::vector >, std::string)’: weakarg.cpp:404:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^~ weakarg.cpp:404:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^ g++ -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o warg warg-data.o warg-rng.o warg-wargxml.o warg-move.o warg-metropolis.o warg-moveaddedge.o warg-moveageclonal.o warg-movedelta.o warg-moveedgechange.o warg-moveregraftclonal.o warg-moveremedge.o warg-moverho.o warg-movescaletree.o warg-movegreedytree.o warg-movesitechange.o warg-movetheta.o warg-movetimechange.o warg-mpiutils.o warg-node.o warg-param.o warg-recedge.o warg-rectree.o warg-tree.o warg-weakarg.o -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making all in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' dh_auto_test -a -O--sourcedirectory=warg cd warg && make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/warg' Making check in src make[2]: Entering directory '/<>/warg/src' make profilerun.sh make[3]: Entering directory '/<>/warg/src' make[3]: 'profilerun.sh' is up to date. make[3]: Leaving directory '/<>/warg/src' make check-TESTS make[3]: Entering directory '/<>/warg/src' make[4]: Entering directory '/<>/warg/src' PASS: profilerun.sh ============================================================================ Testsuite summary for clonalorigin 0.0.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/warg/src' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making check in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=warg dh_testroot -a -O--sourcedirectory=warg dh_prep -a -O--sourcedirectory=warg dh_auto_install -a -O--sourcedirectory=warg cd warg && make -j4 install DESTDIR=/<>/debian/clonalorigin AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/warg' Making install in src make[2]: Entering directory '/<>/warg/src' make[3]: Entering directory '/<>/warg/src' /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c warg '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making install in scripts make[2]: Entering directory '/<>/warg/scripts' make[3]: Entering directory '/<>/warg/scripts' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c blocksplit.pl computeMedians.pl makeMauveWargFile.pl '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/scripts' make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[3]: Entering directory '/<>/warg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/warg' make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rename 's/\.pl//' debian/clonalorigin/usr/bin/*.pl make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=warg dh_installchangelogs -a -O--sourcedirectory=warg dh_installman -a -O--sourcedirectory=warg dh_installinit -a -O--sourcedirectory=warg dh_perl -a -O--sourcedirectory=warg dh_link -a -O--sourcedirectory=warg dh_strip_nondeterminism -a -O--sourcedirectory=warg dh_compress -a -O--sourcedirectory=warg dh_fixperms -a -O--sourcedirectory=warg dh_missing -a -O--sourcedirectory=warg dh_strip -a -O--sourcedirectory=warg dh_makeshlibs -a -O--sourcedirectory=warg dh_shlibdeps -a -O--sourcedirectory=warg dh_installdeb -a -O--sourcedirectory=warg dh_gencontrol -a -O--sourcedirectory=warg dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=warg dh_builddeb -a -O--sourcedirectory=warg INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing clonalorigin (in debian/clonalorigin); do_strip: , oemstrip: pkgstriptranslations: processing clonalorigin-dbgsym (in debian/.debhelper/clonalorigin/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clonalorigin/dbgsym-root/DEBIAN/control, package clonalorigin-dbgsym, directory debian/.debhelper/clonalorigin/dbgsym-root dpkg-deb: building package 'clonalorigin-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalorigin/clonalorigin-dbgsym_1.0-3build2_arm64.deb'. pkgstripfiles: processing control file: debian/clonalorigin/DEBIAN/control, package clonalorigin, directory debian/clonalorigin pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalorigin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalorigin' in '../clonalorigin_1.0-3build2_arm64.deb'. Renaming clonalorigin-dbgsym_1.0-3build2_arm64.deb to clonalorigin-dbgsym_1.0-3build2_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalorigin_1.0-3build2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200507-2237 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build2_arm64.changes: --------------------------------------- Format: 1.8 Date: Thu, 07 May 2020 21:55:53 +0000 Source: clonalorigin Binary: clonalorigin Architecture: arm64 Version: 1.0-3build2 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: clonalorigin - inference of homologous recombination in bacteria using whole gen Changes: clonalorigin (1.0-3build2) groovy; urgency=medium . * No-change rebuild against libgsl25 Checksums-Sha1: 4752ceb3d6b16af8d37f665bcfd5f88e002912d2 2235856 clonalorigin-dbgsym_1.0-3build2_arm64.ddeb 6c33fb5cda69e280fe3479f90be704a1eb2072c7 5264 clonalorigin_1.0-3build2_arm64.buildinfo fefd1bc52bb82783ec24d38c95a92939ae2c436a 144512 clonalorigin_1.0-3build2_arm64.deb Checksums-Sha256: 47cc3dd4cfbc10f3b8145d544c480d1292136ca8e4b947763709f7021204124c 2235856 clonalorigin-dbgsym_1.0-3build2_arm64.ddeb cc9b5a793f2da32c49b02b26ef2abab6600dca10dd3d6e954c4150fc08018c0e 5264 clonalorigin_1.0-3build2_arm64.buildinfo 06e2c99474ec4457f61e7530bf3d902165d0eb767edf6bece96115fd8ff83ba2 144512 clonalorigin_1.0-3build2_arm64.deb Files: 847ce02b2e079fe6bfc20b1da8690560 2235856 debug optional clonalorigin-dbgsym_1.0-3build2_arm64.ddeb 4e809ec2f16821be132fc65cd82cbad0 5264 science optional clonalorigin_1.0-3build2_arm64.buildinfo cfa2d8f17c18b37b3ea6c0d63eb78378 144512 science optional clonalorigin_1.0-3build2_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build2_arm64.deb ---------------------------------- new debian package, version 2.0. size 144512 bytes: control archive=1204 bytes. 1155 bytes, 21 lines control 507 bytes, 8 lines md5sums Package: clonalorigin Version: 1.0-3build2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 346 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl25 (>= 2.6), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://github.com/xavierdidelot/clonalorigin Description: inference of homologous recombination in bacteria using whole genome sequences Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally known as recombination. The mechanisms by which recombination takes place have been studied extensively in the laboratory but much remains to be understood concerning how, when and where recombination takes place within natural populations of bacteria and how it helps them to adapt to new environments. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry. drwxr-xr-x root/root 0 2020-05-07 21:55 ./ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/bin/ -rwxr-xr-x root/root 430 2020-05-07 21:55 ./usr/bin/blocksplit lrwxrwxrwx root/root 0 2020-05-07 21:55 ./usr/bin/clonalorigin -> warg -rwxr-xr-x root/root 3039 2020-05-07 21:55 ./usr/bin/computeMedians -rwxr-xr-x root/root 1111 2020-05-07 21:55 ./usr/bin/makeMauveWargFile -rwxr-xr-x root/root 331016 2020-05-07 21:55 ./usr/bin/warg drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/doc/clonalorigin/ -rw-r--r-- root/root 504 2019-01-02 14:29 ./usr/share/doc/clonalorigin/README.Debian -rw-r--r-- root/root 433 2020-05-07 21:55 ./usr/share/doc/clonalorigin/changelog.Debian.gz -rw-r--r-- root/root 514 2019-01-02 14:29 ./usr/share/doc/clonalorigin/copyright drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/man/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-05-07 21:55 ./usr/share/man/man1/clonalorigin.1.gz -> warg.1.gz -rw-r--r-- root/root 1604 2020-05-07 21:55 ./usr/share/man/man1/warg.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 40844 Build-Time: 1692 Distribution: groovy-proposed Host Architecture: arm64 Install-Time: 20 Job: clonalorigin_1.0-3build2.dsc Machine Architecture: arm64 Package: clonalorigin Package-Time: 1715 Source-Version: 1.0-3build2 Space: 40844 Status: successful Version: 1.0-3build2 -------------------------------------------------------------------------------- Finished at 20200507-2237 Build needed 00:28:35, 40844k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=arm64 PACKAGEBUILD-19274791 Scanning for processes to kill in build PACKAGEBUILD-19274791