https://launchpad.net/ubuntu/+source/clonalorigin/1.0-3build2/+build/19274792 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-016 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:48:41 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 May 22:08:21 ntpdate[1932]: adjust time server 10.211.37.1 offset -0.011230 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19274792 --image-type chroot /home/buildd/filecache-default/a77e1afdcf3761e08e999e63510e3d2f5c5a8a8d Creating target for build PACKAGEBUILD-19274792 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19274792 Starting target for build PACKAGEBUILD-19274792 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19274792 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19274792 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19274792 Updating target for build PACKAGEBUILD-19274792 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [934 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [8408 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5173 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf Packages [72.8 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [40.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf Packages [369 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [270 kB] Fetched 16.3 MB in 8s (1992 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp-9 dash debconf e2fsprogs g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapt-pkg6.0 libasan5 libatomic1 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libncurses6 libncursesw6 libperl5.30 libprocps8 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 linux-libc-dev logsave make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd sysvinit-utils 54 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 41.2 MB of archives. After this operation, 74.8 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcrypt-dev armhf 1:4.4.15-1ubuntu1 [120 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcrypt1 armhf 1:4.4.15-1ubuntu1 [93.4 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu7 [59.7 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libperl5.30 armhf 5.30.0-10 [3295 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl armhf 5.30.0-10 [224 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-base armhf 5.30.0-10 [1408 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf debconf all 1.5.74 [121 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf dash armhf 0.5.10.2-7 [79.2 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-bin armhf 6.2-1 [164 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-base all 6.2-1 [18.7 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf sysvinit-utils armhf 2.96-3ubuntu1 [19.1 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf libatomic1 armhf 10-20200425-1ubuntu2 [7204 B] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libubsan1 armhf 10-20200425-1ubuntu2 [121 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf libgomp1 armhf 10-20200425-1ubuntu2 [86.8 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-10-base armhf 10-20200425-1ubuntu2 [19.3 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-s1 armhf 10-20200425-1ubuntu2 [36.2 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf libcc1-0 armhf 10-20200425-1ubuntu2 [34.6 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++6 armhf 10-20200425-1ubuntu2 [440 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-sysv armhf 245.5-2ubuntu1 [10.3 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main armhf systemd-timesyncd armhf 245.5-2ubuntu1 [27.9 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libacl1 armhf 2.2.53-8 [16.0 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf libcap2 armhf 1:2.33-1 [15.7 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libcryptsetup12 armhf 2:2.3.1-1ubuntu1 [172 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf libidn2-0 armhf 2.3.0-1 [49.9 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf systemd armhf 245.5-2ubuntu1 [3644 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main armhf libsystemd0 armhf 245.5-2ubuntu1 [249 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf libudev1 armhf 245.5-2ubuntu1 [70.1 kB] Get:29 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libapt-pkg6.0 armhf 2.1.0 [756 kB] Get:30 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gpgv armhf 2.2.20-1ubuntu1 [170 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf apt armhf 2.1.0 [1245 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main armhf logsave armhf 1.45.6-1ubuntu1 [9676 B] Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf libext2fs2 armhf 1.45.6-1ubuntu1 [170 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main armhf e2fsprogs armhf 1.45.6-1ubuntu1 [510 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses6 armhf 6.2-1 [79.7 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main armhf libncursesw6 armhf 6.2-1 [106 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main armhf libtinfo6 armhf 6.2-1 [73.6 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main armhf libcom-err2 armhf 1.45.6-1ubuntu1 [8708 B] Get:39 http://ftpmaster.internal/ubuntu groovy/main armhf libprocps8 armhf 2:3.3.16-4ubuntu1 [29.9 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main armhf libss2 armhf 1.45.6-1ubuntu1 [9384 B] Get:41 http://ftpmaster.internal/ubuntu groovy/main armhf procps armhf 2:3.3.16-4ubuntu1 [222 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main armhf libsqlite3-0 armhf 3.31.1-5 [467 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main armhf libasan5 armhf 9.3.0-11ubuntu2 [386 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main armhf g++-9 armhf 9.3.0-11ubuntu2 [6690 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-9 armhf 9.3.0-11ubuntu2 [6554 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main armhf libstdc++-9-dev armhf 9.3.0-11ubuntu2 [1783 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main armhf libgcc-9-dev armhf 9.3.0-11ubuntu2 [687 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main armhf cpp-9 armhf 9.3.0-11ubuntu2 [5881 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main armhf gcc-9-base armhf 9.3.0-11ubuntu2 [19.4 kB] Get:50 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gpg armhf 2.2.20-1ubuntu1 [427 kB] Get:51 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gpgconf armhf 2.2.20-1ubuntu1 [107 kB] Get:52 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gpg-agent armhf 2.2.20-1ubuntu1 [195 kB] Get:53 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf linux-libc-dev armhf 5.4.0-29.33 [1081 kB] Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf make armhf 4.2.1-2 [150 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.2 MB in 2s (25.1 MB/s) (Reading database ... 12562 files and directories currently installed.) 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Setting up libcom-err2:armhf (1.45.6-1ubuntu1) ... Setting up libgomp1:armhf (10-20200425-1ubuntu2) ... Setting up libcap2:armhf (1:2.33-1) ... Setting up make (4.2.1-2) ... Setting up libncurses6:armhf (6.2-1) ... Setting up libatomic1:armhf (10-20200425-1ubuntu2) ... Setting up libss2:armhf (1.45.6-1ubuntu1) ... Setting up libncursesw6:armhf (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libubsan1:armhf (10-20200425-1ubuntu2) ... Setting up libcrypt-dev:armhf (1:4.4.15-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:armhf (5.30.0-10) ... Setting up libcryptsetup12:armhf (2:2.3.1-1ubuntu1) ... Setting up libcc1-0:armhf (10-20200425-1ubuntu2) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up libprocps8:armhf (2:3.3.16-4ubuntu1) ... Setting up gcc-9-base:armhf (9.3.0-11ubuntu2) ... Setting up gpg-agent (2.2.20-1ubuntu1) ... Setting up e2fsprogs (1.45.6-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libasan5:armhf (9.3.0-11ubuntu2) ... Setting up perl (5.30.0-10) ... Setting up procps (2:3.3.16-4ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up libgcc-9-dev:armhf (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:armhf (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Setting up systemd-timesyncd (245.5-2ubuntu1) ... Setting up systemd (245.5-2ubuntu1) ... Initializing machine ID from KVM UUID. Setting up systemd-sysv (245.5-2ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19274792 armhf groovy-proposed -c chroot:build-PACKAGEBUILD-19274792 --arch=armhf --dist=groovy-proposed --nolog clonalorigin_1.0-3build2.dsc Initiating build PACKAGEBUILD-19274792 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:48:41 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-016.buildd +==============================================================================+ | clonalorigin 1.0-3build2 (armhf) 07 May 2020 22:09 | +==============================================================================+ Package: clonalorigin Version: 1.0-3build2 Source Version: 1.0-3build2 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/clonalorigin-1wqgHp/clonalorigin-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/clonalorigin-1wqgHp' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19274792/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalorigin_1.0-3build2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-H8zOCF/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-H8zOCF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-H8zOCF/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-H8zOCF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-H8zOCF/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-H8zOCF/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (30.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-H8zOCF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (16.9 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12559 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libgsl-dev, rename Filtered Build-Depends: debhelper (>= 11~), libgsl-dev, rename dpkg-deb: building package 'sbuild-build-depends-clonalorigin-dummy' in '/<>/resolver-qm_C6A/apt_archive/sbuild-build-depends-clonalorigin-dummy.deb'. Ign:1 copy:/<>/resolver-qm_C6A/apt_archive ./ InRelease Get:2 copy:/<>/resolver-qm_C6A/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-qm_C6A/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-qm_C6A/apt_archive ./ Sources [227 B] Get:5 copy:/<>/resolver-qm_C6A/apt_archive ./ Packages [548 B] Fetched 2894 B in 0s (62.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clonalorigin build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename sbuild-build-depends-clonalorigin-dummy 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After this operation, 68.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-qm_C6A/apt_archive ./ sbuild-build-depends-clonalorigin-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf bsdmainutils armhf 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf libuchardet0 armhf 0.0.6-3build1 [62.4 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf groff-base armhf 1.22.4-5 [759 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main armhf man-db armhf 2.9.1-1 [1077 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic-mgc armhf 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic1 armhf 1:5.38-4 [68.3 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf file armhf 1:5.38-4 [22.4 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf libglib2.0-0 armhf 2.64.2-1 [1123 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf libicu66 armhf 66.1-2ubuntu2 [8222 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libxml2 armhf 2.9.10+dfsg-5 [546 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf m4 armhf 1.4.18-4 [187 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf automake all 1:1.16.1-4ubuntu6 [522 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main armhf dwz armhf 0.13-5 [153 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main armhf debhelper all 13ubuntu1 [877 kB] Get:35 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf libgslcblas0 armhf 2.6+dfsg-2 [62.8 kB] Get:36 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf libgsl25 armhf 2.6+dfsg-2 [743 kB] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf libgsl-dev armhf 2.6+dfsg-2 [964 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/universe armhf rename all 1.10-1 [16.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.3 MB in 1s (20.9 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 12559 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_armhf.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_armhf.deb ... Unpacking man-db (2.9.1-1) ... 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Preparing to unpack .../36-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) ... Selecting previously unselected package sbuild-build-depends-clonalorigin-dummy. Preparing to unpack .../37-sbuild-build-depends-clonalorigin-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up libgslcblas0:armhf (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libgsl25:armhf (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.64.2-1) ... No schema files found: doing nothing. Setting up libicu66:armhf (66.1-2ubuntu2) ... Setting up libdebhelper-perl (13ubuntu1) ... Setting up libmagic1:armhf (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.38-4) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:armhf (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libxml2:armhf (2.9.10+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-178-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-11ubuntu2 gcc-9_9.3.0-11ubuntu2 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 linux-libc-dev_5.4.0-29.33 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.0 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-arm-linux-gnueabihf_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-11ubuntu2 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-11ubuntu2 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200425-1ubuntu2 gcc-9_9.3.0-11ubuntu2 gcc-9-base_9.3.0-11ubuntu2 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_2.13.3-7ubuntu5 libapt-pkg6.0_2.1.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-11ubuntu2 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200425-1ubuntu2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.33-1 libcc1-0_10-20200425-1ubuntu2 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1ubuntu1 libcrypt1_1:4.4.15-1ubuntu1 libcryptsetup12_2:2.3.1-1ubuntu1 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu9 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-11ubuntu2 libgcc-s1_10-20200425-1ubuntu2 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200425-1ubuntu2 libgpg-error0_1.37-1 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-4ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu1 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-5 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 libsub-override-perl_0.09-2 libsystemd0_245.5-2ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200425-1ubuntu2 libuchardet0_0.0.6-3build1 libudev1_245.5-2ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-29.33 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-4ubuntu1 readline-common_8.0-4 rename_1.10-1 sbuild-build-depends-clonalorigin-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.5-2ubuntu1 systemd-sysv_245.5-2ubuntu1 systemd-timesyncd_245.5-2ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu May 7 21:55:55 2020 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalorigin_1.0-3build2.dsc dpkg-source: info: extracting clonalorigin in clonalorigin-1.0 dpkg-source: info: unpacking clonalorigin_1.0.orig.tar.gz dpkg-source: info: unpacking clonalorigin_1.0-3build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying portability.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19274792 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19274792 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19274792 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalorigin dpkg-buildpackage: info: source version 1.0-3build2 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=warg dh_auto_clean -O--sourcedirectory=warg dh_autoreconf_clean -O--sourcedirectory=warg dh_clean -O--sourcedirectory=warg debian/rules build-arch dh build-arch --sourcedirectory=warg dh_update_autotools_config -a -O--sourcedirectory=warg dh_autoreconf -a -O--sourcedirectory=warg configure.ac:41: installing 'config/compile' configure.ac:9: installing 'config/install-sh' configure.ac:9: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' dh_auto_configure -a -O--sourcedirectory=warg cd warg && ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for floor... no checking for pow... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a -O--sourcedirectory=warg cd warg && make -j4 make[1]: Entering directory '/<>/warg' Making all in src make[2]: Entering directory '/<>/warg/src' make all-am make[3]: Entering directory '/<>/warg/src' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-data.o `test -f 'data.cpp' || echo './'`data.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rng.o `test -f 'rng.cpp' || echo './'`rng.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-wargxml.o `test -f 'wargxml.cpp' || echo './'`wargxml.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-move.o `test -f 'move.cpp' || echo './'`move.cpp rng.cpp: In function ‘long unsigned int weakarg::makerng(bool)’: rng.cpp:16:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 16 | long int rng_seed; | ^~~~~~~~ rng.cpp: In function ‘int weakarg::loadrng(std::string)’: rng.cpp:66:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 66 | long int rng_seed; | ^~~~~~~~ rng.cpp: In function ‘long unsigned int weakarg::seedrng(long unsigned int)’: rng.cpp:40:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 40 | fread(&tseed,sizeof(tseed),1,devrandom); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ data.cpp: In constructor ‘weakarg::Data::Data(std::string)’: data.cpp:50:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | }else if(getNumber(tmpname)!=which){ | ~~~~~~~~~~~~~~~~~~^~~~~~~ data.cpp: In member function ‘void weakarg::Data::subset(std::vector, int)’: data.cpp:169:14: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 169 | if (num<=0 &&seed>=0 || num<0) return; | ~~~~~~~^~~~~~~~~ data.cpp:177:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<, int>::value_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-metropolis.o `test -f 'metropolis.cpp' || echo './'`metropolis.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveaddedge.o `test -f 'moveaddedge.cpp' || echo './'`moveaddedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveageclonal.o `test -f 'moveageclonal.cpp' || echo './'`moveageclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movedelta.o `test -f 'movedelta.cpp' || echo './'`movedelta.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveedgechange.o `test -f 'moveedgechange.cpp' || echo './'`moveedgechange.cpp moveageclonal.cpp: In member function ‘virtual int weakarg::MoveAgeClonal::move()’: moveageclonal.cpp:126:43: warning: ‘movetemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 126 | if(movetemp!=NULL) delete(movetemp); | ^ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveregraftclonal.o `test -f 'moveregraftclonal.cpp' || echo './'`moveregraftclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveremedge.o `test -f 'moveremedge.cpp' || echo './'`moveremedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moverho.o `test -f 'moverho.cpp' || echo './'`moverho.cpp moveregraftclonal.cpp: In member function ‘virtual int weakarg::MoveRegraftClonal::move()’: moveregraftclonal.cpp:43:9: warning: unused variable ‘notmovednode’ [-Wunused-variable] 43 | int notmovednode=rectree->otherChild(origfather,which); | ^~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movescaletree.o `test -f 'movescaletree.cpp' || echo './'`movescaletree.cpp moveregraftclonal.cpp: In member function ‘void weakarg::MoveRegraftClonal::regraft(int, int)’: moveregraftclonal.cpp:157:54: warning: unused variable ‘wnode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~ moveregraftclonal.cpp:157:86: warning: unused variable ‘wtonode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movegreedytree.o `test -f 'movegreedytree.cpp' || echo './'`movegreedytree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movesitechange.o `test -f 'movesitechange.cpp' || echo './'`movesitechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetheta.o `test -f 'movetheta.cpp' || echo './'`movetheta.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetimechange.o `test -f 'movetimechange.cpp' || echo './'`movetimechange.cpp movegreedytree.cpp: In member function ‘void weakarg::MoveGreedyTree::applyChanges(std::vector)’: movegreedytree.cpp:230:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 230 | int whichto=-1,tmp; | ^~~ In file included from /usr/include/c++/9/vector:72, from data.h:3, from param.h:3, from move.h:4, from movesitechange.h:4, from movesitechange.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-mpiutils.o `test -f 'mpiutils.cpp' || echo './'`mpiutils.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-node.o `test -f 'node.cpp' || echo './'`node.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-param.o `test -f 'param.cpp' || echo './'`param.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-recedge.o `test -f 'recedge.cpp' || echo './'`recedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rectree.o `test -f 'rectree.cpp' || echo './'`rectree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-tree.o `test -f 'tree.cpp' || echo './'`tree.cpp rectree.cpp: In member function ‘int weakarg::RecTree::moveNodeTime(int, int*, double, int, std::vector*, std::vector*)’: rectree.cpp:1112:7: warning: variable ‘newfather’ set but not used [-Wunused-but-set-variable] 1112 | int newfather,notnewfather; | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-weakarg.o `test -f 'weakarg.cpp' || echo './'`weakarg.cpp weakarg.cpp:40:13: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 40 | ret.append(__DATE__); | ^~~~~~~~ weakarg.cpp:42:13: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 42 | ret.append(__TIME__); | ^~~~~~~~ In file included from /usr/include/c++/9/vector:72, from node.h:4, from tree.h:3, from tree.cpp:1: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~ weakarg.cpp: In function ‘int main(int, char**)’: weakarg.cpp:127:10: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 127 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘std::vector weakarg::readInputFiles(weakarg::Data*&, weakarg::RecTree*&, std::vector&, std::vector&, std::vector&, std::vector >, std::string, int)’: weakarg.cpp:342:7: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 342 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘bool weakarg::initializeTree(weakarg::Data*&, weakarg::RecTree*&, std::vector >, std::string)’: weakarg.cpp:404:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^~ weakarg.cpp:404:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^ In file included from /usr/include/c++/9/vector:72, from node.h:4, from tree.h:3, from rectree.h:3, from weakarg.cpp:6: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 509 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from node.h:4, from tree.h:3, from rectree.h:3, from weakarg.cpp:6: /usr/include/c++/9/bits/stl_vector.h: In function ‘weakarg::ProgramOptions& weakarg::opt()’: /usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 957 | _M_fill_insert(end(), __new_size - size(), __x); | ^~~~~~~~~~~~~~ g++ -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o warg warg-data.o warg-rng.o warg-wargxml.o warg-move.o warg-metropolis.o warg-moveaddedge.o warg-moveageclonal.o warg-movedelta.o warg-moveedgechange.o warg-moveregraftclonal.o warg-moveremedge.o warg-moverho.o warg-movescaletree.o warg-movegreedytree.o warg-movesitechange.o warg-movetheta.o warg-movetimechange.o warg-mpiutils.o warg-node.o warg-param.o warg-recedge.o warg-rectree.o warg-tree.o warg-weakarg.o -L/usr/lib/arm-linux-gnueabihf -lgsl -lgslcblas -lm make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making all in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' dh_auto_test -a -O--sourcedirectory=warg cd warg && make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/warg' Making check in src make[2]: Entering directory '/<>/warg/src' make profilerun.sh make[3]: Entering directory '/<>/warg/src' make[3]: 'profilerun.sh' is up to date. make[3]: Leaving directory '/<>/warg/src' make check-TESTS make[3]: Entering directory '/<>/warg/src' make[4]: Entering directory '/<>/warg/src' PASS: profilerun.sh ============================================================================ Testsuite summary for clonalorigin 0.0.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/warg/src' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making check in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=warg dh_testroot -a -O--sourcedirectory=warg dh_prep -a -O--sourcedirectory=warg dh_auto_install -a -O--sourcedirectory=warg cd warg && make -j4 install DESTDIR=/<>/debian/clonalorigin AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/warg' Making install in src make[2]: Entering directory '/<>/warg/src' make[3]: Entering directory '/<>/warg/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c warg '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making install in scripts make[2]: Entering directory '/<>/warg/scripts' make[3]: Entering directory '/<>/warg/scripts' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c blocksplit.pl computeMedians.pl makeMauveWargFile.pl '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/scripts' make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[3]: Entering directory '/<>/warg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/warg' make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rename 's/\.pl//' debian/clonalorigin/usr/bin/*.pl make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=warg dh_installchangelogs -a -O--sourcedirectory=warg dh_installman -a -O--sourcedirectory=warg dh_installinit -a -O--sourcedirectory=warg dh_perl -a -O--sourcedirectory=warg dh_link -a -O--sourcedirectory=warg dh_strip_nondeterminism -a -O--sourcedirectory=warg dh_compress -a -O--sourcedirectory=warg dh_fixperms -a -O--sourcedirectory=warg dh_missing -a -O--sourcedirectory=warg dh_strip -a -O--sourcedirectory=warg dh_makeshlibs -a -O--sourcedirectory=warg dh_shlibdeps -a -O--sourcedirectory=warg dpkg-shlibdeps: warning: debian/clonalorigin/usr/bin/warg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--sourcedirectory=warg dh_gencontrol -a -O--sourcedirectory=warg dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=warg dh_builddeb -a -O--sourcedirectory=warg INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing clonalorigin-dbgsym (in debian/.debhelper/clonalorigin/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing clonalorigin (in debian/clonalorigin); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clonalorigin/dbgsym-root/DEBIAN/control, package clonalorigin-dbgsym, directory debian/.debhelper/clonalorigin/dbgsym-root pkgstripfiles: processing control file: debian/clonalorigin/DEBIAN/control, package clonalorigin, directory debian/clonalorigin dpkg-deb: building package 'clonalorigin-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalorigin/clonalorigin-dbgsym_1.0-3build2_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalorigin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalorigin' in '../clonalorigin_1.0-3build2_armhf.deb'. Renaming clonalorigin-dbgsym_1.0-3build2_armhf.deb to clonalorigin-dbgsym_1.0-3build2_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalorigin_1.0-3build2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200507-2235 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build2_armhf.changes: --------------------------------------- Format: 1.8 Date: Thu, 07 May 2020 21:55:53 +0000 Source: clonalorigin Binary: clonalorigin Architecture: armhf Version: 1.0-3build2 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: clonalorigin - inference of homologous recombination in bacteria using whole gen Changes: clonalorigin (1.0-3build2) groovy; urgency=medium . * No-change rebuild against libgsl25 Checksums-Sha1: 9d516f898e88a5a58292bea52d64b7e680ae5e9b 2188884 clonalorigin-dbgsym_1.0-3build2_armhf.ddeb 6228378763ca16ac5e585e409937068e50ab6859 5159 clonalorigin_1.0-3build2_armhf.buildinfo ec109e5e56ab42ae0fa2c0f297eebe0b4883ad5d 132848 clonalorigin_1.0-3build2_armhf.deb Checksums-Sha256: 5afe70936fa61371dc398545f7f038a85b75809aa6f506c48f7eeacb853f3975 2188884 clonalorigin-dbgsym_1.0-3build2_armhf.ddeb 2ce4e2229d05e35fd1ab12a2b06b4f0b699007238039313614dfa6cc46ce6c94 5159 clonalorigin_1.0-3build2_armhf.buildinfo 285b63f87055aff7dbac2b83d459959047d7569574dbc96291599c67407976ae 132848 clonalorigin_1.0-3build2_armhf.deb Files: ccee845a24d8fe81c1f25c9a9d7f4bcc 2188884 debug optional clonalorigin-dbgsym_1.0-3build2_armhf.ddeb 6ec0b27a409ccd549ab8f6eb624b142b 5159 science optional clonalorigin_1.0-3build2_armhf.buildinfo b395e472d01696b788e872d6dc429513 132848 science optional clonalorigin_1.0-3build2_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build2_armhf.deb ---------------------------------- new debian package, version 2.0. size 132848 bytes: control archive=1204 bytes. 1155 bytes, 21 lines control 507 bytes, 8 lines md5sums Package: clonalorigin Version: 1.0-3build2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 265 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgsl25 (>= 2.6), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://github.com/xavierdidelot/clonalorigin Description: inference of homologous recombination in bacteria using whole genome sequences Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally known as recombination. The mechanisms by which recombination takes place have been studied extensively in the laboratory but much remains to be understood concerning how, when and where recombination takes place within natural populations of bacteria and how it helps them to adapt to new environments. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry. drwxr-xr-x root/root 0 2020-05-07 21:55 ./ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/bin/ -rwxr-xr-x root/root 430 2020-05-07 21:55 ./usr/bin/blocksplit lrwxrwxrwx root/root 0 2020-05-07 21:55 ./usr/bin/clonalorigin -> warg -rwxr-xr-x root/root 3039 2020-05-07 21:55 ./usr/bin/computeMedians -rwxr-xr-x root/root 1111 2020-05-07 21:55 ./usr/bin/makeMauveWargFile -rwxr-xr-x root/root 248452 2020-05-07 21:55 ./usr/bin/warg drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/doc/clonalorigin/ -rw-r--r-- root/root 504 2019-01-02 14:29 ./usr/share/doc/clonalorigin/README.Debian -rw-r--r-- root/root 433 2020-05-07 21:55 ./usr/share/doc/clonalorigin/changelog.Debian.gz -rw-r--r-- root/root 514 2019-01-02 14:29 ./usr/share/doc/clonalorigin/copyright drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/man/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-05-07 21:55 ./usr/share/man/man1/clonalorigin.1.gz -> warg.1.gz -rw-r--r-- root/root 1604 2020-05-07 21:55 ./usr/share/man/man1/warg.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 28364 Build-Time: 1549 Distribution: groovy-proposed Host Architecture: armhf Install-Time: 30 Job: clonalorigin_1.0-3build2.dsc Machine Architecture: arm64 Package: clonalorigin Package-Time: 1583 Source-Version: 1.0-3build2 Space: 28364 Status: successful Version: 1.0-3build2 -------------------------------------------------------------------------------- Finished at 20200507-2235 Build needed 00:26:23, 28364k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19274792 Scanning for processes to kill in build PACKAGEBUILD-19274792