https://launchpad.net/ubuntu/+source/clonalorigin/1.0-3build2/+build/19274795 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-002 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:44:42 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 7 May 21:55:49 ntpdate[1860]: adjust time server 10.211.37.1 offset 0.001308 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19274795 --image-type chroot /home/buildd/filecache-default/0c27a67c210d6cb13869ddd14c37f7dc742e8ea2 Creating target for build PACKAGEBUILD-19274795 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19274795 Starting target for build PACKAGEBUILD-19274795 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19274795 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19274795 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19274795 Updating target for build PACKAGEBUILD-19274795 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main s390x Packages [922 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe s390x Packages [8313 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5173 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x Packages [70.8 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [40.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe s390x Packages [368 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [262 kB] Fetched 16.2 MB in 4s (3991 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp-9 dash debconf e2fsprogs g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapt-pkg6.0 libasan5 libatomic1 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 libncurses6 libncursesw6 libperl5.30 libprocps8 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 linux-libc-dev logsave make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd sysvinit-utils 55 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 41.4 MB of archives. After this operation, 151 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libcrypt-dev s390x 1:4.4.15-1ubuntu1 [107 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libcrypt1 s390x 1:4.4.15-1ubuntu1 [80.7 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main s390x base-files s390x 11ubuntu7 [60.0 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libperl5.30 s390x 5.30.0-10 [3781 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x perl s390x 5.30.0-10 [224 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x perl-base s390x 5.30.0-10 [1422 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main s390x debconf all 1.5.74 [121 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main s390x dash s390x 0.5.10.2-7 [86.0 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main s390x ncurses-bin s390x 6.2-1 [170 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main s390x ncurses-base all 6.2-1 [18.7 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main s390x sysvinit-utils s390x 2.96-3ubuntu1 [20.6 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main s390x libatomic1 s390x 10-20200425-1ubuntu2 [8396 B] Get:14 http://ftpmaster.internal/ubuntu groovy/main s390x libubsan1 s390x 10-20200425-1ubuntu2 [155 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main s390x libitm1 s390x 10-20200425-1ubuntu2 [28.6 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main s390x libgomp1 s390x 10-20200425-1ubuntu2 [114 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main s390x gcc-10-base s390x 10-20200425-1ubuntu2 [19.3 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main s390x libgcc-s1 s390x 10-20200425-1ubuntu2 [30.4 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main s390x libcc1-0 s390x 10-20200425-1ubuntu2 [39.4 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main s390x libstdc++6 s390x 10-20200425-1ubuntu2 [518 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main s390x systemd-sysv s390x 245.5-2ubuntu1 [10.3 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main s390x systemd-timesyncd s390x 245.5-2ubuntu1 [26.0 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main s390x libacl1 s390x 2.2.53-8 [18.5 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main s390x libcap2 s390x 1:2.33-1 [17.7 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main s390x libcryptsetup12 s390x 2:2.3.1-1ubuntu1 [169 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main s390x libidn2-0 s390x 2.3.0-1 [51.7 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main s390x systemd s390x 245.5-2ubuntu1 [3430 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main s390x libsystemd0 s390x 245.5-2ubuntu1 [249 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main s390x libudev1 s390x 245.5-2ubuntu1 [73.1 kB] Get:30 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libapt-pkg6.0 s390x 2.1.0 [779 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gpgv s390x 2.2.20-1ubuntu1 [186 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x apt s390x 2.1.0 [1249 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main s390x logsave s390x 1.45.6-1ubuntu1 [10.1 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main s390x libext2fs2 s390x 1.45.6-1ubuntu1 [178 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main s390x e2fsprogs s390x 1.45.6-1ubuntu1 [508 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main s390x libncurses6 s390x 6.2-1 [94.9 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main s390x libncursesw6 s390x 6.2-1 [122 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main s390x libtinfo6 s390x 6.2-1 [84.6 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main s390x libcom-err2 s390x 1.45.6-1ubuntu1 [9512 B] Get:40 http://ftpmaster.internal/ubuntu groovy/main s390x libprocps8 s390x 2:3.3.16-4ubuntu1 [30.9 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main s390x libss2 s390x 1.45.6-1ubuntu1 [11.0 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main s390x procps s390x 2:3.3.16-4ubuntu1 [225 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main s390x libsqlite3-0 s390x 3.31.1-5 [512 kB] Get:44 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libasan5 s390x 9.3.0-12ubuntu1 [361 kB] Get:45 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x g++-9 s390x 9.3.0-12ubuntu1 [6609 kB] Get:46 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gcc-9 s390x 9.3.0-12ubuntu1 [6472 kB] Get:47 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libstdc++-9-dev s390x 9.3.0-12ubuntu1 [1678 kB] Get:48 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x libgcc-9-dev s390x 9.3.0-12ubuntu1 [704 kB] Get:49 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x cpp-9 s390x 9.3.0-12ubuntu1 [5731 kB] Get:50 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gcc-9-base s390x 9.3.0-12ubuntu1 [19.5 kB] Get:51 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gpg s390x 2.2.20-1ubuntu1 [448 kB] Get:52 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gpgconf s390x 2.2.20-1ubuntu1 [119 kB] Get:53 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x gpg-agent s390x 2.2.20-1ubuntu1 [218 kB] Get:54 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x linux-libc-dev s390x 5.4.0-29.33 [1098 kB] Get:55 http://ftpmaster.internal/ubuntu groovy-proposed/main s390x make s390x 4.2.1-2 [160 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.4 MB in 0s (83.6 MB/s) (Reading database ... 12607 files and directories currently installed.) 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Unpacking libgcc-9-dev:s390x (9.3.0-12ubuntu1) over (9.3.0-10ubuntu2) ... Preparing to unpack .../10-cpp-9_9.3.0-12ubuntu1_s390x.deb ... Unpacking cpp-9 (9.3.0-12ubuntu1) over (9.3.0-10ubuntu2) ... Preparing to unpack .../11-gcc-9-base_9.3.0-12ubuntu1_s390x.deb ... Unpacking gcc-9-base:s390x (9.3.0-12ubuntu1) over (9.3.0-10ubuntu2) ... Preparing to unpack .../12-gpg_2.2.20-1ubuntu1_s390x.deb ... Unpacking gpg (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../13-gpgconf_2.2.20-1ubuntu1_s390x.deb ... Unpacking gpgconf (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../14-gpg-agent_2.2.20-1ubuntu1_s390x.deb ... Unpacking gpg-agent (2.2.20-1ubuntu1) over (2.2.19-3ubuntu2) ... Preparing to unpack .../15-linux-libc-dev_5.4.0-29.33_s390x.deb ... Unpacking linux-libc-dev:s390x (5.4.0-29.33) over (5.4.0-26.30) ... Preparing to unpack .../16-make_4.2.1-2_s390x.deb ... Unpacking make (4.2.1-2) over (4.2.1-1.2) ... Setting up perl-modules-5.30 (5.30.0-10) ... Setting up libsqlite3-0:s390x (3.31.1-5) ... Setting up linux-libc-dev:s390x (5.4.0-29.33) ... Setting up libcom-err2:s390x (1.45.6-1ubuntu1) ... Setting up libgomp1:s390x (10-20200425-1ubuntu2) ... Setting up libcap2:s390x (1:2.33-1) ... Setting up make (4.2.1-2) ... Setting up libncurses6:s390x (6.2-1) ... Setting up libatomic1:s390x (10-20200425-1ubuntu2) ... Setting up libss2:s390x (1.45.6-1ubuntu1) ... Setting up libncursesw6:s390x (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libubsan1:s390x (10-20200425-1ubuntu2) ... Setting up libcrypt-dev:s390x (1:4.4.15-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:s390x (5.30.0-10) ... Setting up libcryptsetup12:s390x (2:2.3.1-1ubuntu1) ... Setting up libcc1-0:s390x (10-20200425-1ubuntu2) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up libprocps8:s390x (2:3.3.16-4ubuntu1) ... Setting up libitm1:s390x (10-20200425-1ubuntu2) ... Setting up gcc-9-base:s390x (9.3.0-12ubuntu1) ... Setting up gpg-agent (2.2.20-1ubuntu1) ... Setting up e2fsprogs (1.45.6-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up libasan5:s390x (9.3.0-12ubuntu1) ... Setting up perl (5.30.0-10) ... Setting up procps (2:3.3.16-4ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Removing obsolete conffile /etc/sysctl.d/10-link-restrictions.conf ... Setting up cpp-9 (9.3.0-12ubuntu1) ... Setting up libgcc-9-dev:s390x (9.3.0-12ubuntu1) ... Setting up gcc-9 (9.3.0-12ubuntu1) ... Setting up libstdc++-9-dev:s390x (9.3.0-12ubuntu1) ... Setting up g++-9 (9.3.0-12ubuntu1) ... Setting up systemd-timesyncd (245.5-2ubuntu1) ... Setting up systemd (245.5-2ubuntu1) ... Initializing machine ID from random generator. Setting up systemd-sysv (245.5-2ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19274795 s390x groovy-proposed -c chroot:build-PACKAGEBUILD-19274795 --arch=s390x --dist=groovy-proposed --nolog clonalorigin_1.0-3build2.dsc Initiating build PACKAGEBUILD-19274795 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:44:42 UTC 2020 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-002.buildd +==============================================================================+ | clonalorigin 1.0-3build2 (s390x) 07 May 2020 21:56 | +==============================================================================+ Package: clonalorigin Version: 1.0-3build2 Source Version: 1.0-3build2 Distribution: groovy-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/clonalorigin-JpzKcm/clonalorigin-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/clonalorigin-JpzKcm' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19274795/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalorigin_1.0-3build2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-I6Y_yj/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-I6Y_yj/apt_archive ./ InRelease Get:2 copy:/<>/resolver-I6Y_yj/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-I6Y_yj/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-I6Y_yj/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-I6Y_yj/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-I6Y_yj/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12604 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libgsl-dev, rename Filtered Build-Depends: debhelper (>= 11~), libgsl-dev, rename dpkg-deb: building package 'sbuild-build-depends-clonalorigin-dummy' in '/<>/resolver-hWFWLv/apt_archive/sbuild-build-depends-clonalorigin-dummy.deb'. Ign:1 copy:/<>/resolver-hWFWLv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hWFWLv/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hWFWLv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hWFWLv/apt_archive ./ Sources [227 B] Get:5 copy:/<>/resolver-hWFWLv/apt_archive ./ Packages [544 B] Fetched 2890 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clonalorigin build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu66 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename sbuild-build-depends-clonalorigin-dummy 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After this operation, 78.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hWFWLv/apt_archive ./ sbuild-build-depends-clonalorigin-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main s390x libbsd0 s390x 0.10.0-1 [43.7 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main s390x bsdmainutils s390x 11.1.2ubuntu3 [181 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main s390x libuchardet0 s390x 0.0.6-3build1 [64.6 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main s390x groff-base s390x 1.22.4-5 [812 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main s390x libpipeline1 s390x 1.5.2-2build1 [26.5 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main s390x man-db s390x 2.9.1-1 [1101 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main s390x libmagic-mgc s390x 1:5.38-4 [219 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main s390x libmagic1 s390x 1:5.38-4 [72.8 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main s390x file s390x 1:5.38-4 [23.1 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main s390x libelf1 s390x 0.176-1.1build1 [47.5 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main s390x libglib2.0-0 s390x 2.64.2-1 [1180 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main s390x libicu66 s390x 66.1-2ubuntu2 [8263 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main s390x libxml2 s390x 2.9.10+dfsg-5 [659 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main s390x m4 s390x 1.4.18-4 [196 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main s390x autoconf all 2.69-11.1 [321 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main s390x automake all 1:1.16.1-4ubuntu6 [522 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main s390x libtool all 2.4.6-14 [161 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main s390x dh-autoreconf all 19 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main s390x libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main s390x libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main s390x dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:29 http://ftpmaster.internal/ubuntu groovy/main s390x dwz s390x 0.13-5 [146 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main s390x po-debconf all 1.0.21 [233 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main s390x debhelper all 13ubuntu1 [877 kB] Get:35 http://ftpmaster.internal/ubuntu groovy-proposed/universe s390x libgslcblas0 s390x 2.6+dfsg-2 [76.7 kB] Get:36 http://ftpmaster.internal/ubuntu groovy-proposed/universe s390x libgsl25 s390x 2.6+dfsg-2 [812 kB] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/universe s390x libgsl-dev s390x 2.6+dfsg-2 [1012 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/universe s390x rename all 1.10-1 [16.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.7 MB in 0s (63.9 MB/s) Selecting previously unselected package libbsd0:s390x. (Reading database ... 12604 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_s390x.deb ... Unpacking libbsd0:s390x (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_s390x.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_s390x.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_s390x.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.38-4_s390x.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../07-libmagic1_1%3a5.38-4_s390x.deb ... Unpacking libmagic1:s390x (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.38-4_s390x.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../09-libelf1_0.176-1.1build1_s390x.deb ... Unpacking libelf1:s390x (0.176-1.1build1) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../10-libglib2.0-0_2.64.2-1_s390x.deb ... Unpacking libglib2.0-0:s390x (2.64.2-1) ... Selecting previously unselected package libicu66:s390x. Preparing to unpack .../11-libicu66_66.1-2ubuntu2_s390x.deb ... Unpacking libicu66:s390x (66.1-2ubuntu2) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../12-libxml2_2.9.10+dfsg-5_s390x.deb ... Unpacking libxml2:s390x (2.9.10+dfsg-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.19.8.1-10build1_s390x.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libsigsegv2:s390x. Preparing to unpack .../14-libsigsegv2_2.12-2_s390x.deb ... Unpacking libsigsegv2:s390x (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-4_s390x.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13ubuntu1_all.deb ... Unpacking debhelper (13ubuntu1) ... Selecting previously unselected package libgslcblas0:s390x. Preparing to unpack .../33-libgslcblas0_2.6+dfsg-2_s390x.deb ... Unpacking libgslcblas0:s390x (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:s390x. Preparing to unpack .../34-libgsl25_2.6+dfsg-2_s390x.deb ... Unpacking libgsl25:s390x (2.6+dfsg-2) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../35-libgsl-dev_2.6+dfsg-2_s390x.deb ... Unpacking libgsl-dev (2.6+dfsg-2) ... Selecting previously unselected package rename. Preparing to unpack .../36-rename_1.10-1_all.deb ... Unpacking rename (1.10-1) ... Selecting previously unselected package sbuild-build-depends-clonalorigin-dummy. Preparing to unpack .../37-sbuild-build-depends-clonalorigin-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.2-2build1) ... Setting up libgslcblas0:s390x (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libgsl25:s390x (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.64.2-1) ... No schema files found: doing nothing. Setting up libicu66:s390x (66.1-2ubuntu2) ... Setting up libdebhelper-perl (13ubuntu1) ... Setting up libmagic1:s390x (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up rename (1.10-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.38-4) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:s390x (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:s390x (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:s390x (0.10.0-1) ... Setting up libelf1:s390x (0.176-1.1build1) ... Setting up libxml2:s390x (2.9.10+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-178-generic s390x (s390x) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-12ubuntu1 gcc-9_9.3.0-12ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-12ubuntu1 libstdc++6_10-20200425-1ubuntu2 linux-libc-dev_5.4.0-29.33 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.0 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-s390x-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-12ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-12ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200425-1ubuntu2 gcc-9_9.3.0-12ubuntu1 gcc-9-base_9.3.0-12ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_2.13.3-7ubuntu5 libapt-pkg6.0_2.1.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-12ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200425-1ubuntu2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.33-1 libcc1-0_10-20200425-1ubuntu2 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1ubuntu1 libcrypt1_1:4.4.15-1ubuntu1 libcryptsetup12_2:2.3.1-1ubuntu1 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu9 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-12ubuntu1 libgcc-s1_10-20200425-1ubuntu2 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200425-1ubuntu2 libgpg-error0_1.37-1 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10-20200425-1ubuntu2 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-4ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu1 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-5 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-12ubuntu1 libstdc++6_10-20200425-1ubuntu2 libsub-override-perl_0.09-2 libsystemd0_245.5-2ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200425-1ubuntu2 libuchardet0_0.0.6-3build1 libudev1_245.5-2ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-29.33 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-4ubuntu1 readline-common_8.0-4 rename_1.10-1 sbuild-build-depends-clonalorigin-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.5-2ubuntu1 systemd-sysv_245.5-2ubuntu1 systemd-timesyncd_245.5-2ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu May 7 21:55:55 2020 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalorigin_1.0-3build2.dsc dpkg-source: info: extracting clonalorigin in clonalorigin-1.0 dpkg-source: info: unpacking clonalorigin_1.0.orig.tar.gz dpkg-source: info: unpacking clonalorigin_1.0-3build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying portability.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19274795 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19274795 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19274795 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalorigin dpkg-buildpackage: info: source version 1.0-3build2 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --sourcedirectory=warg dh_auto_clean -O--sourcedirectory=warg dh_autoreconf_clean -O--sourcedirectory=warg dh_clean -O--sourcedirectory=warg debian/rules build-arch dh build-arch --sourcedirectory=warg dh_update_autotools_config -a -O--sourcedirectory=warg dh_autoreconf -a -O--sourcedirectory=warg configure.ac:41: installing 'config/compile' configure.ac:9: installing 'config/install-sh' configure.ac:9: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' dh_auto_configure -a -O--sourcedirectory=warg cd warg && ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for floor... no checking for pow... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a -O--sourcedirectory=warg cd warg && make -j4 make[1]: Entering directory '/<>/warg' Making all in src make[2]: Entering directory '/<>/warg/src' make all-am make[3]: Entering directory '/<>/warg/src' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-data.o `test -f 'data.cpp' || echo './'`data.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rng.o `test -f 'rng.cpp' || echo './'`rng.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-wargxml.o `test -f 'wargxml.cpp' || echo './'`wargxml.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-move.o `test -f 'move.cpp' || echo './'`move.cpp rng.cpp: In function ‘long unsigned int weakarg::makerng(bool)’: rng.cpp:16:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 16 | long int rng_seed; | ^~~~~~~~ rng.cpp: In function ‘int weakarg::loadrng(std::string)’: rng.cpp:66:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 66 | long int rng_seed; | ^~~~~~~~ data.cpp: In constructor ‘weakarg::Data::Data(std::string)’: data.cpp:50:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | }else if(getNumber(tmpname)!=which){ | ~~~~~~~~~~~~~~~~~~^~~~~~~ data.cpp: In member function ‘void weakarg::Data::subset(std::vector, int)’: data.cpp:169:14: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 169 | if (num<=0 &&seed>=0 || num<0) return; | ~~~~~~~^~~~~~~~~ data.cpp:177:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<, int>::value_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-metropolis.o `test -f 'metropolis.cpp' || echo './'`metropolis.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveaddedge.o `test -f 'moveaddedge.cpp' || echo './'`moveaddedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveageclonal.o `test -f 'moveageclonal.cpp' || echo './'`moveageclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movedelta.o `test -f 'movedelta.cpp' || echo './'`movedelta.cpp moveageclonal.cpp: In member function ‘virtual int weakarg::MoveAgeClonal::move()’: moveageclonal.cpp:126:43: warning: ‘movetemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 126 | if(movetemp!=NULL) delete(movetemp); | ^ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveedgechange.o `test -f 'moveedgechange.cpp' || echo './'`moveedgechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveregraftclonal.o `test -f 'moveregraftclonal.cpp' || echo './'`moveregraftclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveremedge.o `test -f 'moveremedge.cpp' || echo './'`moveremedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moverho.o `test -f 'moverho.cpp' || echo './'`moverho.cpp moveregraftclonal.cpp: In member function ‘virtual int weakarg::MoveRegraftClonal::move()’: moveregraftclonal.cpp:43:9: warning: unused variable ‘notmovednode’ [-Wunused-variable] 43 | int notmovednode=rectree->otherChild(origfather,which); | ^~~~~~~~~~~~ moveregraftclonal.cpp: In member function ‘void weakarg::MoveRegraftClonal::regraft(int, int)’: moveregraftclonal.cpp:157:54: warning: unused variable ‘wnode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~ moveregraftclonal.cpp:157:86: warning: unused variable ‘wtonode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movescaletree.o `test -f 'movescaletree.cpp' || echo './'`movescaletree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movegreedytree.o `test -f 'movegreedytree.cpp' || echo './'`movegreedytree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movesitechange.o `test -f 'movesitechange.cpp' || echo './'`movesitechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetheta.o `test -f 'movetheta.cpp' || echo './'`movetheta.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetimechange.o `test -f 'movetimechange.cpp' || echo './'`movetimechange.cpp movegreedytree.cpp: In member function ‘void weakarg::MoveGreedyTree::applyChanges(std::vector)’: movegreedytree.cpp:230:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 230 | int whichto=-1,tmp; | ^~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-mpiutils.o `test -f 'mpiutils.cpp' || echo './'`mpiutils.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-node.o `test -f 'node.cpp' || echo './'`node.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-param.o `test -f 'param.cpp' || echo './'`param.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-recedge.o `test -f 'recedge.cpp' || echo './'`recedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rectree.o `test -f 'rectree.cpp' || echo './'`rectree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-tree.o `test -f 'tree.cpp' || echo './'`tree.cpp rectree.cpp: In member function ‘int weakarg::RecTree::moveNodeTime(int, int*, double, int, std::vector*, std::vector*)’: rectree.cpp:1112:7: warning: variable ‘newfather’ set but not used [-Wunused-but-set-variable] 1112 | int newfather,notnewfather; | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-weakarg.o `test -f 'weakarg.cpp' || echo './'`weakarg.cpp weakarg.cpp:40:13: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 40 | ret.append(__DATE__); | ^~~~~~~~ weakarg.cpp:42:13: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 42 | ret.append(__TIME__); | ^~~~~~~~ weakarg.cpp: In function ‘int main(int, char**)’: weakarg.cpp:127:10: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 127 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘std::vector weakarg::readInputFiles(weakarg::Data*&, weakarg::RecTree*&, std::vector&, std::vector&, std::vector&, std::vector >, std::string, int)’: weakarg.cpp:342:7: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 342 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘bool weakarg::initializeTree(weakarg::Data*&, weakarg::RecTree*&, std::vector >, std::string)’: weakarg.cpp:404:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^~ weakarg.cpp:404:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^ g++ -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o warg warg-data.o warg-rng.o warg-wargxml.o warg-move.o warg-metropolis.o warg-moveaddedge.o warg-moveageclonal.o warg-movedelta.o warg-moveedgechange.o warg-moveregraftclonal.o warg-moveremedge.o warg-moverho.o warg-movescaletree.o warg-movegreedytree.o warg-movesitechange.o warg-movetheta.o warg-movetimechange.o warg-mpiutils.o warg-node.o warg-param.o warg-recedge.o warg-rectree.o warg-tree.o warg-weakarg.o -L/usr/lib/s390x-linux-gnu -lgsl -lgslcblas -lm make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making all in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' dh_auto_test -a -O--sourcedirectory=warg cd warg && make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/warg' Making check in src make[2]: Entering directory '/<>/warg/src' make profilerun.sh make[3]: Entering directory '/<>/warg/src' make[3]: 'profilerun.sh' is up to date. make[3]: Leaving directory '/<>/warg/src' make check-TESTS make[3]: Entering directory '/<>/warg/src' make[4]: Entering directory '/<>/warg/src' PASS: profilerun.sh ============================================================================ Testsuite summary for clonalorigin 0.0.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/warg/src' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making check in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=warg dh_testroot -a -O--sourcedirectory=warg dh_prep -a -O--sourcedirectory=warg dh_auto_install -a -O--sourcedirectory=warg cd warg && make -j4 install DESTDIR=/<>/debian/clonalorigin AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/warg' Making install in src make[2]: Entering directory '/<>/warg/src' make[3]: Entering directory '/<>/warg/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c warg '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making install in scripts make[2]: Entering directory '/<>/warg/scripts' make[3]: Entering directory '/<>/warg/scripts' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c blocksplit.pl computeMedians.pl makeMauveWargFile.pl '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/scripts' make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[3]: Entering directory '/<>/warg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/warg' make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rename 's/\.pl//' debian/clonalorigin/usr/bin/*.pl make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=warg dh_installchangelogs -a -O--sourcedirectory=warg dh_installman -a -O--sourcedirectory=warg dh_installinit -a -O--sourcedirectory=warg dh_perl -a -O--sourcedirectory=warg dh_link -a -O--sourcedirectory=warg dh_strip_nondeterminism -a -O--sourcedirectory=warg dh_compress -a -O--sourcedirectory=warg dh_fixperms -a -O--sourcedirectory=warg dh_missing -a -O--sourcedirectory=warg dh_strip -a -O--sourcedirectory=warg dh_makeshlibs -a -O--sourcedirectory=warg dh_shlibdeps -a -O--sourcedirectory=warg dh_installdeb -a -O--sourcedirectory=warg dh_gencontrol -a -O--sourcedirectory=warg dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=warg dh_builddeb -a -O--sourcedirectory=warg INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing clonalorigin (in debian/clonalorigin); do_strip: , oemstrip: pkgstriptranslations: processing clonalorigin-dbgsym (in debian/.debhelper/clonalorigin/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clonalorigin/DEBIAN/control, package clonalorigin, directory debian/clonalorigin pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalorigin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalorigin' in '../clonalorigin_1.0-3build2_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clonalorigin/dbgsym-root/DEBIAN/control, package clonalorigin-dbgsym, directory debian/.debhelper/clonalorigin/dbgsym-root dpkg-deb: building package 'clonalorigin-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalorigin/clonalorigin-dbgsym_1.0-3build2_s390x.deb'. Renaming clonalorigin-dbgsym_1.0-3build2_s390x.deb to clonalorigin-dbgsym_1.0-3build2_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalorigin_1.0-3build2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200507-2204 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build2_s390x.changes: --------------------------------------- Format: 1.8 Date: Thu, 07 May 2020 21:55:53 +0000 Source: clonalorigin Binary: clonalorigin Architecture: s390x Version: 1.0-3build2 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: clonalorigin - inference of homologous recombination in bacteria using whole gen Changes: clonalorigin (1.0-3build2) groovy; urgency=medium . * No-change rebuild against libgsl25 Checksums-Sha1: f32eee8b7aab9e2c073aec6ca0689cff868d2e1b 2324180 clonalorigin-dbgsym_1.0-3build2_s390x.ddeb 94030e8758b6f3f038d2246708ecaf90aab5c102 5190 clonalorigin_1.0-3build2_s390x.buildinfo cc5b1bf029dfad2d246367227c21561ce058709b 146684 clonalorigin_1.0-3build2_s390x.deb Checksums-Sha256: 2e9d15154e549cafceb7f036d93d403b671689c673c8dfc9bed8bfe86e978768 2324180 clonalorigin-dbgsym_1.0-3build2_s390x.ddeb bdbd703ffd50ab6883f627612b51137d96a428ef11a9cfd8389991a47c87f740 5190 clonalorigin_1.0-3build2_s390x.buildinfo 4b23702263aef27794e08f9493dab6dd7a049e7eb091869dc7d1f2365af5a50b 146684 clonalorigin_1.0-3build2_s390x.deb Files: e2bce87d84248cf594de0fc7be1f0064 2324180 debug optional clonalorigin-dbgsym_1.0-3build2_s390x.ddeb 7515db9cf6f3987edc913be995a194eb 5190 science optional clonalorigin_1.0-3build2_s390x.buildinfo 080de382717aca87e5406ec3abbe4d27 146684 science optional clonalorigin_1.0-3build2_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalorigin_1.0-3build2_s390x.deb ---------------------------------- new debian package, version 2.0. size 146684 bytes: control archive=1204 bytes. 1155 bytes, 21 lines control 507 bytes, 8 lines md5sums Package: clonalorigin Version: 1.0-3build2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 418 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl25 (>= 2.6), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://github.com/xavierdidelot/clonalorigin Description: inference of homologous recombination in bacteria using whole genome sequences Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally known as recombination. The mechanisms by which recombination takes place have been studied extensively in the laboratory but much remains to be understood concerning how, when and where recombination takes place within natural populations of bacteria and how it helps them to adapt to new environments. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry. drwxr-xr-x root/root 0 2020-05-07 21:55 ./ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/bin/ -rwxr-xr-x root/root 430 2020-05-07 21:55 ./usr/bin/blocksplit lrwxrwxrwx root/root 0 2020-05-07 21:55 ./usr/bin/clonalorigin -> warg -rwxr-xr-x root/root 3039 2020-05-07 21:55 ./usr/bin/computeMedians -rwxr-xr-x root/root 1111 2020-05-07 21:55 ./usr/bin/makeMauveWargFile -rwxr-xr-x root/root 404712 2020-05-07 21:55 ./usr/bin/warg drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/doc/clonalorigin/ -rw-r--r-- root/root 504 2019-01-02 14:29 ./usr/share/doc/clonalorigin/README.Debian -rw-r--r-- root/root 433 2020-05-07 21:55 ./usr/share/doc/clonalorigin/changelog.Debian.gz -rw-r--r-- root/root 514 2019-01-02 14:29 ./usr/share/doc/clonalorigin/copyright drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/man/ drwxr-xr-x root/root 0 2020-05-07 21:55 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-05-07 21:55 ./usr/share/man/man1/clonalorigin.1.gz -> warg.1.gz -rw-r--r-- root/root 1604 2020-05-07 21:55 ./usr/share/man/man1/warg.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 41292 Build-Time: 520 Distribution: groovy-proposed Host Architecture: s390x Install-Time: 5 Job: clonalorigin_1.0-3build2.dsc Machine Architecture: s390x Package: clonalorigin Package-Time: 527 Source-Version: 1.0-3build2 Space: 41292 Status: successful Version: 1.0-3build2 -------------------------------------------------------------------------------- Finished at 20200507-2204 Build needed 00:08:47, 41292k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=s390x PACKAGEBUILD-19274795 Scanning for processes to kill in build PACKAGEBUILD-19274795