https://launchpad.net/ubuntu/+source/clonalorigin/1.0-4/+build/20361964 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-008 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:18:21 UTC 2020 s390x Buildd toolchain package versions: launchpad-buildd_191~460~ubuntu18.04.1 python3-lpbuildd_191~460~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 3 Dec 23:17:27 ntpdate[1751]: adjust time server 10.211.37.1 offset -0.000570 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20361964 --image-type chroot /home/buildd/filecache-default/9aaab3d1c3367126bc5b66d2474faf9141147628 Creating target for build PACKAGEBUILD-20361964 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20361964 Starting target for build PACKAGEBUILD-20361964 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20361964 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20361964 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20361964 Updating target for build PACKAGEBUILD-20361964 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x Packages [1327 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe s390x Packages [12.2 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5343 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x Packages [181 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [78.3 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe s390x Packages [879 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [454 kB] Fetched 21.6 MB in 5s (4692 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libisl23 libperl5.32 perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils coreutils cpp-10 dash dpkg dpkg-dev fakeroot g++-10 gcc-10 gcc-10-base grep init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libgcc-10-dev libgcc-s1 libgcrypt20 libgomp1 libgssapi-krb5-2 libidn2-0 libip4tc2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 liblz4-1 libmount1 libmpc3 libncurses6 libncursesw6 libnpth0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libubsan1 libudev1 libuuid1 linux-libc-dev login mount ncurses-base ncurses-bin passwd perl perl-base readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata util-linux 94 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 168 MB of archives. After this operation, 474 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main s390x libcrypt-dev s390x 1:4.4.17-1ubuntu1 [111 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute/main s390x libc6-dev s390x 2.32-0ubuntu5 [1744 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main s390x libc-dev-bin s390x 2.32-0ubuntu5 [29.8 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main s390x libcrypt1 s390x 1:4.4.17-1ubuntu1 [84.3 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x linux-libc-dev s390x 5.8.0-31.33+21.04.1 [1135 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main s390x libtirpc-common all 1.2.6-3 [7444 B] Get:7 http://ftpmaster.internal/ubuntu hirsute/main s390x libk5crypto3 s390x 1.17-10ubuntu1 [78.5 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main s390x libgssapi-krb5-2 s390x 1.17-10ubuntu1 [115 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x libkrb5-3 s390x 1.17-10ubuntu1 [374 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main s390x libkrb5support0 s390x 1.17-10ubuntu1 [31.4 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main s390x libtirpc-dev s390x 1.2.6-3 [190 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x libtirpc3 s390x 1.2.6-3 [75.2 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x libisl23 s390x 0.23-1 [689 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcc1-0 s390x 10.2.0-20ubuntu1 [47.7 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x gcc-10-base s390x 10.2.0-20ubuntu1 [19.6 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcc-s1 s390x 10.2.0-20ubuntu1 [30.4 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgomp1 s390x 10.2.0-20ubuntu1 [115 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libitm1 s390x 10.2.0-20ubuntu1 [28.6 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libatomic1 s390x 10.2.0-20ubuntu1 [8388 B] Get:20 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libasan6 s390x 10.2.0-20ubuntu1 [2278 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libubsan1 s390x 10.2.0-20ubuntu1 [907 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x g++-10 s390x 10.2.0-20ubuntu1 [42.9 MB] Get:23 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libstdc++-10-dev s390x 10.2.0-20ubuntu1 [1738 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libgcc-10-dev s390x 10.2.0-20ubuntu1 [777 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x gcc-10 s390x 10.2.0-20ubuntu1 [45.1 MB] Get:26 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x cpp-10 s390x 10.2.0-20ubuntu1 [38.5 MB] Get:27 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libstdc++6 s390x 10.2.0-20ubuntu1 [520 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main s390x libmpc3 s390x 1.2.0-1 [43.6 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main s390x libctf0 s390x 2.35.1-3ubuntu1 [49.5 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main s390x libctf-nobfd0 s390x 2.35.1-3ubuntu1 [50.6 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x libbinutils s390x 2.35.1-3ubuntu1 [338 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x binutils-common s390x 2.35.1-3ubuntu1 [212 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main s390x binutils s390x 2.35.1-3ubuntu1 [3344 B] Get:34 http://ftpmaster.internal/ubuntu hirsute/main s390x binutils-s390x-linux-gnu s390x 2.35.1-3ubuntu1 [1694 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main s390x libc6 s390x 2.32-0ubuntu5 [2340 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main s390x base-files s390x 11ubuntu16 [60.4 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main s390x bash s390x 5.1~rc3-1ubuntu1 [761 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main s390x bsdutils s390x 1:2.36.1-1ubuntu2 [85.9 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main s390x coreutils s390x 8.32-4ubuntu1 [1457 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main s390x tar s390x 1.32+dfsg-1 [307 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main s390x dpkg s390x 1.20.5ubuntu3 [1177 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main s390x dash s390x 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 [113 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main s390x grep s390x 3.6-1 [161 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main s390x login s390x 1:4.8.1-1ubuntu7 [219 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncursesw6 s390x 6.2+20201114-1 [136 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libncurses6 s390x 6.2+20201114-1 [106 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libtinfo6 s390x 6.2+20201114-1 [92.4 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-bin s390x 6.2+20201114-1 [176 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-modules-5.32 all 5.32.0-5 [2754 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libperl5.32 s390x 5.32.0-5 [3945 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl s390x 5.32.0-5 [225 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x perl-base s390x 5.32.0-5 [1575 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main s390x util-linux s390x 2.36.1-1ubuntu2 [1072 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebconfclient0 s390x 0.255ubuntu1 [6064 B] Get:55 http://ftpmaster.internal/ubuntu hirsute/main s390x base-passwd s390x 3.5.48 [48.5 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x init-system-helpers all 1.59 [38.2 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main s390x libc-bin s390x 2.32-0ubuntu5 [586 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x ncurses-base all 6.2+20201114-1 [18.5 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main s390x sysvinit-utils s390x 2.96-5ubuntu1 [20.6 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main s390x libgcrypt20 s390x 1.8.7-2ubuntu1 [393 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main s390x liblz4-1 s390x 1.9.3-0ubuntu1 [57.8 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd-sysv s390x 246.6-5ubuntu1 [10.3 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit-common all 1:2.8.5-3ubuntu2 [4092 B] Get:64 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libcap-ng0 s390x 0.7.9-2.2build1 [11.0 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main s390x libaudit1 s390x 1:2.8.5-3ubuntu2 [38.1 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main s390x libselinux1 s390x 3.1-2build1 [75.3 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage-common all 3.1-1build1 [10.1 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main s390x libsemanage1 s390x 3.1-1build1 [88.2 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main s390x passwd s390x 1:4.8.1-1ubuntu7 [793 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x adduser all 3.118ubuntu3 [163 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd-timesyncd s390x 246.6-5ubuntu1 [27.2 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libapparmor1 s390x 3.0.0-0ubuntu4 [36.2 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main s390x libcap2 s390x 1:2.44-1 [18.3 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main s390x libblkid1 s390x 2.36.1-1ubuntu2 [128 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main s390x libudev1 s390x 246.6-5ubuntu1 [73.7 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libdevmapper1.02.1 s390x 2:1.02.167-1ubuntu4 [122 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main s390x libuuid1 s390x 2.36.1-1ubuntu2 [21.6 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main s390x libcryptsetup12 s390x 2:2.3.4-1ubuntu1 [184 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main s390x libidn2-0 s390x 2.3.0-4 [51.4 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main s390x libip4tc2 s390x 1.8.5-3ubuntu4 [20.0 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main s390x libmount1 s390x 2.36.1-1ubuntu2 [142 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main s390x libseccomp2 s390x 2.4.3-1ubuntu5 [56.3 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main s390x mount s390x 2.36.1-1ubuntu2 [119 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main s390x systemd s390x 246.6-5ubuntu1 [4293 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main s390x libsystemd0 s390x 246.6-5ubuntu1 [292 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main s390x libapt-pkg6.0 s390x 2.1.12 [848 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main s390x apt s390x 2.1.12 [1294 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x init s390x 1.59 [6164 B] Get:89 http://ftpmaster.internal/ubuntu hirsute/main s390x libsmartcols1 s390x 2.36.1-1ubuntu2 [94.2 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x readline-common all 8.1~rc3-1 [54.1 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libreadline8 s390x 8.1~rc3-1 [143 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/main s390x tzdata all 2020d-1ubuntu1 [293 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main s390x dpkg-dev all 1.20.5ubuntu3 [758 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main s390x libdpkg-perl all 1.20.5ubuntu3 [232 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x libfakeroot s390x 1.25.3-1.1 [27.5 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute-proposed/main s390x fakeroot s390x 1.25.3-1.1 [62.7 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main s390x libnpth0 s390x 1.6-3 [8048 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 168 MB in 3s (53.6 MB/s) (Reading database ... 12766 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20361964 s390x hirsute-proposed -c chroot:build-PACKAGEBUILD-20361964 --arch=s390x --dist=hirsute-proposed --nolog clonalorigin_1.0-4.dsc Initiating build PACKAGEBUILD-20361964 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-118-generic #119-Ubuntu SMP Tue Sep 8 12:18:21 UTC 2020 s390x sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-s390x-008.buildd +==============================================================================+ | clonalorigin 1.0-4 (s390x) Thu, 03 Dec 2020 23:18:02 +0000 | +==============================================================================+ Package: clonalorigin Version: 1.0-4 Source Version: 1.0-4 Distribution: hirsute-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20361964/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clonalorigin_1.0-4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/clonalorigin-n7JTf8/clonalorigin-1.0' with '<>' I: NOTICE: Log filtering will replace 'build/clonalorigin-n7JTf8' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ywYYdt/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-ywYYdt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ywYYdt/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-ywYYdt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ywYYdt/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-ywYYdt/apt_archive ./ Packages [434 B] Fetched 1740 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ywYYdt/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14698 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libgsl-dev, rename Filtered Build-Depends: debhelper-compat (= 13), libgsl-dev, rename dpkg-deb: building package 'sbuild-build-depends-clonalorigin-dummy' in '/<>/resolver-ywYYdt/apt_archive/sbuild-build-depends-clonalorigin-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-clonalorigin-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-ywYYdt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ywYYdt/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-ywYYdt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ywYYdt/apt_archive ./ Sources [509 B] Get:5 copy:/<>/resolver-ywYYdt/apt_archive ./ Packages [588 B] Fetched 2060 B in 0s (0 B/s) Reading package lists... Reading package lists... Install clonalorigin build dependencies (apt-based resolver) ------------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl libio-stringy-perl libpod-parser-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl25 libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf rename sbuild-build-depends-clonalorigin-dummy 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After this operation, 80.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-ywYYdt/apt_archive ./ sbuild-build-depends-clonalorigin-dummy 0.invalid.0 [880 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main s390x bsdextrautils s390x 2.36.1-1ubuntu2 [77.5 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main s390x libuchardet0 s390x 0.0.7-1 [67.5 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main s390x groff-base s390x 1.22.4-5 [812 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main s390x libpipeline1 s390x 1.5.3-1 [28.7 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main s390x man-db s390x 2.9.3-2 [1106 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic-mgc s390x 1:5.39-3 [229 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main s390x libmagic1 s390x 1:5.39-3 [83.6 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/main s390x file s390x 1:5.39-3 [24.0 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main s390x libelf1 s390x 0.182-1 [48.2 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main s390x libglib2.0-0 s390x 2.66.3-2 [1322 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main s390x libicu67 s390x 67.1-4 [8473 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main s390x libxml2 s390x 2.9.10+dfsg-6.3 [645 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext-base s390x 0.19.8.1-10build1 [49.0 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main s390x libsigsegv2 s390x 2.12-2build1 [13.7 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main s390x m4 s390x 1.4.18-4 [196 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main s390x autoconf all 2.69-11.1 [321 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main s390x automake all 1:1.16.3-1ubuntu1 [552 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main s390x autopoint all 0.19.8.1-10build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main s390x libtool all 2.4.6-14 [161 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main s390x libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main s390x libsub-override-perl all 0.09-2 [9532 B] Get:26 http://ftpmaster.internal/ubuntu hirsute/main s390x libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main s390x dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:28 http://ftpmaster.internal/ubuntu hirsute/main s390x dwz s390x 0.13-5 [146 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main s390x libcroco3 s390x 0.6.13-1 [73.7 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main s390x gettext s390x 0.19.8.1-10build1 [867 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main s390x intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main s390x po-debconf all 1.0.21 [233 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main s390x debhelper all 13.2.1ubuntu1 [879 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/universe s390x libgslcblas0 s390x 2.6+dfsg-2 [76.7 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/universe s390x libgsl25 s390x 2.6+dfsg-2 [812 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/universe s390x libgsl-dev s390x 2.6+dfsg-2 [1012 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/universe s390x rename all 1.13-1 [16.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.0 MB in 1s (17.6 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 14698 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-1ubuntu2_s390x.deb ... Unpacking bsdextrautils (2.36.1-1ubuntu2) ... Selecting previously unselected package libuchardet0:s390x. Preparing to unpack .../01-libuchardet0_0.0.7-1_s390x.deb ... Unpacking libuchardet0:s390x (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_s390x.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.3-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_s390x.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.39-3_s390x.deb ... Unpacking libmagic-mgc (1:5.39-3) ... 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Preparing to unpack .../36-sbuild-build-depends-clonalorigin-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.3-1) ... Setting up bsdextrautils (2.36.1-1ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:s390x (67.1-4) ... Setting up libgslcblas0:s390x (2.6+dfsg-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:s390x (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.66.3-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.2.1ubuntu1) ... Setting up libmagic1:s390x (1:5.39-3) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up rename (1.13-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1) ... Setting up libsigsegv2:s390x (2.12-2build1) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libuchardet0:s390x (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:s390x (0.182-1) ... Setting up libxml2:s390x (2.9.10+dfsg-6.3) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up libcroco3:s390x (0.6.13-1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.3-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-10build1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up sbuild-build-depends-clonalorigin-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-118-generic s390x (s390x) Toolchain package versions: binutils_2.35.1-3ubuntu1 dpkg-dev_1.20.5ubuntu3 g++-10_10.2.0-20ubuntu1 gcc-10_10.2.0-20ubuntu1 libc6-dev_2.32-0ubuntu5 libstdc++-10-dev_10.2.0-20ubuntu1 libstdc++6_10.2.0-20ubuntu1 linux-libc-dev_5.8.0-31.33+21.04.1 Package versions: adduser_3.118ubuntu3 advancecomp_2.1-2.1build1 apt_2.1.12 autoconf_2.69-11.1 automake_1:1.16.3-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu16 base-passwd_3.5.48 bash_5.1~rc3-1ubuntu1 binutils_2.35.1-3ubuntu1 binutils-common_2.35.1-3ubuntu1 binutils-s390x-linux-gnu_2.35.1-3ubuntu1 bsdextrautils_2.36.1-1ubuntu2 bsdutils_1:2.36.1-1ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-4ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-20ubuntu1 dash_0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu3 dpkg-dev_1.20.5ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-20ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-20ubuntu1 gcc-10-base_10.2.0-20ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.59 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_3.0.0-0ubuntu4 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-20ubuntu1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-20ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu2 libaudit1_1:2.8.5-3ubuntu2 libbinutils_2.35.1-3ubuntu1 libblkid1_2.36.1-1ubuntu2 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu5 libc-dev-bin_2.32-0ubuntu5 libc6_2.32-0ubuntu5 libc6-dev_2.32-0ubuntu5 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1 libcc1-0_10.2.0-20ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1ubuntu1 libcrypt1_1:4.4.17-1ubuntu1 libcryptsetup12_2:2.3.4-1ubuntu1 libctf-nobfd0_2.35.1-3ubuntu1 libctf0_2.35.1-3ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.255ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu4 libdpkg-perl_1.20.5ubuntu3 libelf1_0.182-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.3-1.1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-20ubuntu1 libgcc-s1_10.2.0-20ubuntu1 libgcrypt20_1.8.7-2ubuntu1 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-20ubuntu1 libgpg-error0_1.38-2 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.17-10ubuntu1 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-4 libip4tc2_1.8.5-3ubuntu4 libisl22_0.22.1-1 libisl23_0.23-1 libitm1_10.2.0-20ubuntu1 libjson-c5_0.15-1 libk5crypto3_1.17-10ubuntu1 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10ubuntu1 libkrb5support0_1.17-10ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.3-0ubuntu1 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-1ubuntu2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-1 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libreadline8_8.1~rc3-1 libseccomp2_2.4.3-1ubuntu5 libselinux1_3.1-2build1 libsemanage-common_3.1-1build1 libsemanage1_3.1-1build1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36.1-1ubuntu2 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-20ubuntu1 libstdc++6_10.2.0-20ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-5ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-20ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-5ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36.1-1ubuntu2 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-31.33+21.04.1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu7 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-1ubuntu2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu7 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 readline-common_8.1~rc3-1 rename_1.13-1 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-clonalorigin-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-5ubuntu1 systemd-sysv_246.6-5ubuntu1 systemd-timesyncd_246.6-5ubuntu1 sysvinit-utils_2.96-5ubuntu1 tar_1.32+dfsg-1 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36.1-1ubuntu2 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Dec 3 17:39:38 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clonalorigin_1.0-4.dsc dpkg-source: info: extracting clonalorigin in /<> dpkg-source: info: unpacking clonalorigin_1.0.orig.tar.gz dpkg-source: info: unpacking clonalorigin_1.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying portability.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20361964 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20361964 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20361964 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clonalorigin dpkg-buildpackage: info: source version 1.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --sourcedirectory=warg dh_auto_clean -O--sourcedirectory=warg dh_autoreconf_clean -O--sourcedirectory=warg dh_clean -O--sourcedirectory=warg debian/rules binary-arch dh binary-arch --sourcedirectory=warg dh_update_autotools_config -a -O--sourcedirectory=warg dh_autoreconf -a -O--sourcedirectory=warg configure.ac:41: installing 'config/compile' configure.ac:9: installing 'config/install-sh' configure.ac:9: installing 'config/missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing 'config/depcomp' parallel-tests: installing 'config/test-driver' dh_auto_configure -a -O--sourcedirectory=warg cd warg && ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 0.2.5... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for floor... no checking for pow... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/config.h config.status: executing depfiles commands dh_auto_build -a -O--sourcedirectory=warg cd warg && make -j4 make[1]: Entering directory '/<>/warg' Making all in src make[2]: Entering directory '/<>/warg/src' make all-am make[3]: Entering directory '/<>/warg/src' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-data.o `test -f 'data.cpp' || echo './'`data.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rng.o `test -f 'rng.cpp' || echo './'`rng.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-wargxml.o `test -f 'wargxml.cpp' || echo './'`wargxml.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-move.o `test -f 'move.cpp' || echo './'`move.cpp rng.cpp: In function ‘long unsigned int weakarg::makerng(bool)’: rng.cpp:16:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 16 | long int rng_seed; | ^~~~~~~~ rng.cpp: In function ‘int weakarg::loadrng(std::string)’: rng.cpp:66:14: warning: variable ‘rng_seed’ set but not used [-Wunused-but-set-variable] 66 | long int rng_seed; | ^~~~~~~~ data.cpp: In constructor ‘weakarg::Data::Data(std::string)’: data.cpp:50:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | }else if(getNumber(tmpname)!=which){ | ~~~~~~~~~~~~~~~~~~^~~~~~~ data.cpp: In member function ‘void weakarg::Data::subset(std::vector, int)’: data.cpp:169:14: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 169 | if (num<=0 &&seed>=0 || num<0) return; | ~~~~~~~^~~~~~~~~ data.cpp:177:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<, int>::value_type’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | for(int i=0;i=0) {if(!tried[numv[i]]) {regions.push_back(numv[i]);tried[numv[i]]=true;}else{cerr<<"Warning: Duplicate blocks of "<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-metropolis.o `test -f 'metropolis.cpp' || echo './'`metropolis.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveaddedge.o `test -f 'moveaddedge.cpp' || echo './'`moveaddedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveageclonal.o `test -f 'moveageclonal.cpp' || echo './'`moveageclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movedelta.o `test -f 'movedelta.cpp' || echo './'`movedelta.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveedgechange.o `test -f 'moveedgechange.cpp' || echo './'`moveedgechange.cpp moveageclonal.cpp: In member function ‘virtual int weakarg::MoveAgeClonal::move()’: moveageclonal.cpp:126:43: warning: ‘movetemp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 126 | if(movetemp!=NULL) delete(movetemp); | ^ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveregraftclonal.o `test -f 'moveregraftclonal.cpp' || echo './'`moveregraftclonal.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moveremedge.o `test -f 'moveremedge.cpp' || echo './'`moveremedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-moverho.o `test -f 'moverho.cpp' || echo './'`moverho.cpp moveregraftclonal.cpp: In member function ‘virtual int weakarg::MoveRegraftClonal::move()’: moveregraftclonal.cpp:43:9: warning: unused variable ‘notmovednode’ [-Wunused-variable] 43 | int notmovednode=rectree->otherChild(origfather,which); | ^~~~~~~~~~~~ moveregraftclonal.cpp: In member function ‘void weakarg::MoveRegraftClonal::regraft(int, int)’: moveregraftclonal.cpp:157:54: warning: unused variable ‘wnode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~ moveregraftclonal.cpp:157:86: warning: unused variable ‘wtonode’ [-Wunused-variable] 157 | Node *fanode=rectree->getNode(which)->getFather(), *wnode=rectree->getNode(which), *wtonode=rectree->getNode(whichto); | ^~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movescaletree.o `test -f 'movescaletree.cpp' || echo './'`movescaletree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movegreedytree.o `test -f 'movegreedytree.cpp' || echo './'`movegreedytree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movesitechange.o `test -f 'movesitechange.cpp' || echo './'`movesitechange.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetheta.o `test -f 'movetheta.cpp' || echo './'`movetheta.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-movetimechange.o `test -f 'movetimechange.cpp' || echo './'`movetimechange.cpp movegreedytree.cpp: In member function ‘void weakarg::MoveGreedyTree::applyChanges(std::vector)’: movegreedytree.cpp:230:19: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 230 | int whichto=-1,tmp; | ^~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-mpiutils.o `test -f 'mpiutils.cpp' || echo './'`mpiutils.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-node.o `test -f 'node.cpp' || echo './'`node.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-param.o `test -f 'param.cpp' || echo './'`param.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-recedge.o `test -f 'recedge.cpp' || echo './'`recedge.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-rectree.o `test -f 'rectree.cpp' || echo './'`rectree.cpp g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-tree.o `test -f 'tree.cpp' || echo './'`tree.cpp rectree.cpp: In member function ‘int weakarg::RecTree::moveNodeTime(int, int*, double, int, std::vector*, std::vector*)’: rectree.cpp:1112:7: warning: variable ‘newfather’ set but not used [-Wunused-but-set-variable] 1112 | int newfather,notnewfather; | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o warg-weakarg.o `test -f 'weakarg.cpp' || echo './'`weakarg.cpp weakarg.cpp:40:13: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 40 | ret.append(__DATE__); | ^~~~~~~~ weakarg.cpp:42:13: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 42 | ret.append(__TIME__); | ^~~~~~~~ weakarg.cpp: In function ‘int main(int, char**)’: weakarg.cpp:127:10: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 127 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘std::vector weakarg::readInputFiles(weakarg::Data*&, weakarg::RecTree*&, std::vector&, std::vector&, std::vector&, std::vector >, std::string, int)’: weakarg.cpp:342:7: warning: variable ‘setregions’ set but not used [-Wunused-but-set-variable] 342 | bool setregions=false; | ^~~~~~~~~~ weakarg.cpp: In function ‘bool weakarg::initializeTree(weakarg::Data*&, weakarg::RecTree*&, std::vector >, std::string)’: weakarg.cpp:404:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^~ weakarg.cpp:404:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 404 | if(readparams) p->setTheta(pars[2]);p->setRho(pars[0]);p->setDelta(pars[2]); | ^ g++ -I/usr/include -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wall -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -funroll-loops -fomit-frame-pointer -ftree-vectorize -funsafe-math-optimizations -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o warg warg-data.o warg-rng.o warg-wargxml.o warg-move.o warg-metropolis.o warg-moveaddedge.o warg-moveageclonal.o warg-movedelta.o warg-moveedgechange.o warg-moveregraftclonal.o warg-moveremedge.o warg-moverho.o warg-movescaletree.o warg-movegreedytree.o warg-movesitechange.o warg-movetheta.o warg-movetimechange.o warg-mpiutils.o warg-node.o warg-param.o warg-recedge.o warg-rectree.o warg-tree.o warg-weakarg.o -L/usr/lib/s390x-linux-gnu -lgsl -lgslcblas -lm make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making all in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' dh_auto_test -a -O--sourcedirectory=warg cd warg && make -j4 check VERBOSE=1 make[1]: Entering directory '/<>/warg' Making check in src make[2]: Entering directory '/<>/warg/src' make profilerun.sh make[3]: Entering directory '/<>/warg/src' make[3]: 'profilerun.sh' is up to date. make[3]: Leaving directory '/<>/warg/src' make check-TESTS make[3]: Entering directory '/<>/warg/src' make[4]: Entering directory '/<>/warg/src' PASS: profilerun.sh ============================================================================ Testsuite summary for clonalorigin 0.0.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/<>/warg/src' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making check in scripts make[2]: Entering directory '/<>/warg/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=warg dh_prep -a -O--sourcedirectory=warg dh_auto_install -a -O--sourcedirectory=warg cd warg && make -j4 install DESTDIR=/<>/debian/clonalorigin AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/warg' Making install in src make[2]: Entering directory '/<>/warg/src' make[3]: Entering directory '/<>/warg/src' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c warg '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/src' make[2]: Leaving directory '/<>/warg/src' Making install in scripts make[2]: Entering directory '/<>/warg/scripts' make[3]: Entering directory '/<>/warg/scripts' make[3]: Nothing to be done for 'install-data-am'. /bin/mkdir -p '/<>/debian/clonalorigin/usr/bin' /usr/bin/install -c blocksplit.pl computeMedians.pl makeMauveWargFile.pl '/<>/debian/clonalorigin/usr/bin' make[3]: Leaving directory '/<>/warg/scripts' make[2]: Leaving directory '/<>/warg/scripts' make[2]: Entering directory '/<>/warg' make[3]: Entering directory '/<>/warg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/warg' make[2]: Leaving directory '/<>/warg' make[1]: Leaving directory '/<>/warg' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rename 's/\.pl//' debian/clonalorigin/usr/bin/*.pl make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=warg dh_installchangelogs -a -O--sourcedirectory=warg dh_installman -a -O--sourcedirectory=warg dh_installsystemduser -a -O--sourcedirectory=warg dh_perl -a -O--sourcedirectory=warg dh_link -a -O--sourcedirectory=warg dh_strip_nondeterminism -a -O--sourcedirectory=warg dh_compress -a -O--sourcedirectory=warg dh_fixperms -a -O--sourcedirectory=warg dh_missing -a -O--sourcedirectory=warg dh_dwz -a -a -O--sourcedirectory=warg dh_strip -a -a -O--sourcedirectory=warg dh_makeshlibs -a -a -O--sourcedirectory=warg dh_shlibdeps -a -a -O--sourcedirectory=warg dh_installdeb -a -O--sourcedirectory=warg dh_gencontrol -a -O--sourcedirectory=warg dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package clonalorigin: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--sourcedirectory=warg dh_builddeb -a -O--sourcedirectory=warg INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing clonalorigin (in debian/clonalorigin); do_strip: , oemstrip: pkgstriptranslations: processing clonalorigin-dbgsym (in debian/.debhelper/clonalorigin/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clonalorigin/DEBIAN/control, package clonalorigin, directory debian/clonalorigin pkgstripfiles: processing control file: debian/.debhelper/clonalorigin/dbgsym-root/DEBIAN/control, package clonalorigin-dbgsym, directory debian/.debhelper/clonalorigin/dbgsym-root dpkg-deb: building package 'clonalorigin-dbgsym' in 'debian/.debhelper/scratch-space/build-clonalorigin/clonalorigin-dbgsym_1.0-4_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package clonalorigin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clonalorigin' in '../clonalorigin_1.0-4_s390x.deb'. Renaming clonalorigin-dbgsym_1.0-4_s390x.deb to clonalorigin-dbgsym_1.0-4_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clonalorigin_1.0-4_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-03T23:25:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clonalorigin_1.0-4_s390x.changes: --------------------------------- Format: 1.8 Date: Thu, 03 Dec 2020 17:40:12 +0100 Source: clonalorigin Binary: clonalorigin Architecture: s390x Version: 1.0-4 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clonalorigin - inference of homologous recombination in bacteria using whole gen Changes: clonalorigin (1.0-4) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Name in debian/copyright. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: eb9f1ee6dd30cb40f25a9077554635c1b66d22a5 1765524 clonalorigin-dbgsym_1.0-4_s390x.ddeb f6d3fd3431e949ec651aa76b38c2f7a00ebe1d66 5649 clonalorigin_1.0-4_s390x.buildinfo f175a8a1a0ace3a10c11322218499e41f7f91ccb 159804 clonalorigin_1.0-4_s390x.deb Checksums-Sha256: 2482fb5c275a83151453f46093c961dc14ae0c3d7b40dea7c7500b2b883b01ef 1765524 clonalorigin-dbgsym_1.0-4_s390x.ddeb 146088454e284adcfeb776dfc1bb5250eae65ed8e96f09ed8383213bb0ab01f0 5649 clonalorigin_1.0-4_s390x.buildinfo 935fab78d58e42d05a7a5a058896642ea872c3dd09492f103903f2b4967ec3c3 159804 clonalorigin_1.0-4_s390x.deb Files: f598c6740fce40185eb481e0b0d79630 1765524 debug optional clonalorigin-dbgsym_1.0-4_s390x.ddeb 95933b8174c4e32b228bf71c9ca89063 5649 science optional clonalorigin_1.0-4_s390x.buildinfo a45a57ed8851758cf9481ddb6c91b192 159804 science optional clonalorigin_1.0-4_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clonalorigin Binary: clonalorigin clonalorigin-dbgsym Architecture: s390x Version: 1.0-4 Checksums-Md5: f598c6740fce40185eb481e0b0d79630 1765524 clonalorigin-dbgsym_1.0-4_s390x.ddeb a45a57ed8851758cf9481ddb6c91b192 159804 clonalorigin_1.0-4_s390x.deb Checksums-Sha1: eb9f1ee6dd30cb40f25a9077554635c1b66d22a5 1765524 clonalorigin-dbgsym_1.0-4_s390x.ddeb f175a8a1a0ace3a10c11322218499e41f7f91ccb 159804 clonalorigin_1.0-4_s390x.deb Checksums-Sha256: 2482fb5c275a83151453f46093c961dc14ae0c3d7b40dea7c7500b2b883b01ef 1765524 clonalorigin-dbgsym_1.0-4_s390x.ddeb 935fab78d58e42d05a7a5a058896642ea872c3dd09492f103903f2b4967ec3c3 159804 clonalorigin_1.0-4_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Thu, 03 Dec 2020 23:25:20 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.3-1ubuntu1), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu16), base-passwd (= 3.5.48), bash (= 5.1~rc3-1ubuntu1), binutils (= 2.35.1-3ubuntu1), binutils-common (= 2.35.1-3ubuntu1), binutils-s390x-linux-gnu (= 2.35.1-3ubuntu1), bsdextrautils (= 2.36.1-1ubuntu2), bsdutils (= 1:2.36.1-1ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-4ubuntu1), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.0-20ubuntu1), dash (= 0.5.11+git20200708+dd9ef66+really0.5.10.2-0ubuntu1), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu3), dpkg-dev (= 1.20.5ubuntu3), dwz (= 0.13-5), file (= 1:5.39-3), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-20ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-20ubuntu1), gcc-10-base (= 10.2.0-20ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hostname (= 3.23), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-20ubuntu1), libatomic1 (= 10.2.0-20ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu2), libaudit1 (= 1:2.8.5-3ubuntu2), libbinutils (= 2.35.1-3ubuntu1), libblkid1 (= 2.36.1-1ubuntu2), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu5), libc-dev-bin (= 2.32-0ubuntu5), libc6 (= 2.32-0ubuntu5), libc6-dev (= 2.32-0ubuntu5), libcap-ng0 (= 0.7.9-2.2build1), libcc1-0 (= 10.2.0-20ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1ubuntu1), libcrypt1 (= 1:4.4.17-1ubuntu1), libctf-nobfd0 (= 2.35.1-3ubuntu1), libctf0 (= 2.35.1-3ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.255ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdpkg-perl (= 1.20.5ubuntu3), libelf1 (= 0.182-1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-20ubuntu1), libgcc-s1 (= 10.2.0-20ubuntu1), libgcrypt20 (= 1.8.7-2ubuntu1), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.3-2), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 10.2.0-20ubuntu1), libgpg-error0 (= 1.38-2), libgsl-dev (= 2.6+dfsg-2), libgsl25 (= 2.6+dfsg-2), libgslcblas0 (= 2.6+dfsg-2), libgssapi-krb5-2 (= 1.17-10ubuntu1), libicu67 (= 67.1-4), libisl23 (= 0.23-1), libitm1 (= 10.2.0-20ubuntu1), libk5crypto3 (= 1.17-10ubuntu1), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-3 (= 1.17-10ubuntu1), libkrb5support0 (= 1.17-10ubuntu1), liblz4-1 (= 1.9.3-0ubuntu1), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-1ubuntu2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libseccomp2 (= 2.4.3-1ubuntu5), libselinux1 (= 3.1-2build1), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36.1-1ubuntu2), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-20ubuntu1), libstdc++6 (= 10.2.0-20ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-5ubuntu1), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libubsan1 (= 10.2.0-20ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-5ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-1ubuntu2), libxml2 (= 2.9.10+dfsg-6.3), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-31.33+21.04.1), login (= 1:4.8.1-1ubuntu7), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), rename (= 1.13-1), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-5ubuntu1), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-1ubuntu2), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607013612" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clonalorigin_1.0-4_s390x.deb ---------------------------- new Debian package, version 2.0. size 159804 bytes: control archive=1204 bytes. 1149 bytes, 21 lines control 507 bytes, 8 lines md5sums Package: clonalorigin Version: 1.0-4 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 434 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libgsl25 (>= 2.6), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://github.com/xavierdidelot/clonalorigin Description: inference of homologous recombination in bacteria using whole genome sequences Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally known as recombination. The mechanisms by which recombination takes place have been studied extensively in the laboratory but much remains to be understood concerning how, when and where recombination takes place within natural populations of bacteria and how it helps them to adapt to new environments. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry. drwxr-xr-x root/root 0 2020-12-03 16:40 ./ drwxr-xr-x root/root 0 2020-12-03 16:40 ./usr/ drwxr-xr-x root/root 0 2020-12-03 16:40 ./usr/bin/ -rwxr-xr-x root/root 430 2020-12-03 16:40 ./usr/bin/blocksplit lrwxrwxrwx root/root 0 2020-12-03 16:40 ./usr/bin/clonalorigin -> warg -rwxr-xr-x root/root 3039 2020-12-03 16:40 ./usr/bin/computeMedians -rwxr-xr-x root/root 1111 2020-12-03 16:40 ./usr/bin/makeMauveWargFile -rwxr-xr-x root/root 421096 2020-12-03 16:40 ./usr/bin/warg drwxr-xr-x root/root 0 2020-12-03 16:40 ./usr/share/ drwxr-xr-x root/root 0 2020-12-03 16:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-03 16:40 ./usr/share/doc/clonalorigin/ -rw-r--r-- root/root 504 2020-12-03 16:40 ./usr/share/doc/clonalorigin/README.Debian -rw-r--r-- root/root 501 2020-12-03 16:40 ./usr/share/doc/clonalorigin/changelog.Debian.gz -rw-r--r-- root/root 542 2020-12-03 16:40 ./usr/share/doc/clonalorigin/copyright drwxr-xr-x root/root 0 2020-12-03 16:40 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-03 16:40 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-12-03 16:40 ./usr/share/man/man1/clonalorigin.1.gz -> warg.1.gz -rw-r--r-- root/root 1604 2020-12-03 16:40 ./usr/share/man/man1/warg.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: n/a Build-Time: 431 Distribution: hirsute-proposed Host Architecture: s390x Install-Time: 7 Job: clonalorigin_1.0-4.dsc Machine Architecture: s390x Package: clonalorigin Package-Time: 438 Source-Version: 1.0-4 Space: n/a Status: successful Version: 1.0-4 -------------------------------------------------------------------------------- Finished at 2020-12-03T23:25:20Z Build needed 00:07:18, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=s390x PACKAGEBUILD-20361964 Scanning for processes to kill in build PACKAGEBUILD-20361964