RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux fisher07 4.4.0-53-powerpc64-smp #74-Ubuntu SMP Fri Dec 2 16:41:54 UTC 2016 ppc64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 22 Dec 00:18:26 ntpdate[22425]: adjust time server 10.211.37.1 offset 0.000008 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11768050', '/home/buildd/filecache-default/f0d95331816c2600b41a871127347d3aa3e00e52'] Unpacking chroot for build PACKAGEBUILD-11768050 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11768050'] Mounting chroot for build PACKAGEBUILD-11768050 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11768050', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11768050 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11768050', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-11768050 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main powerpc Packages [1178 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [586 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe powerpc Packages [7738 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4648 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc Packages [73.1 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [40.2 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe powerpc Packages [287 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [148 kB] Fetched 15.3 MB in 35s (433 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblzma5 libmount1 libnettle6 libnpth0 libpng16-16 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 99 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 49.5 MB of archives. After this operation, 39.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc base-files powerpc 9.6ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main powerpc debianutils powerpc 4.8.1 [84.9 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main powerpc bash powerpc 4.4-2ubuntu1 [550 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main powerpc bsdutils powerpc 1:2.29-1ubuntu2 [54.0 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main powerpc diffutils powerpc 1:3.5-1 [156 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main powerpc findutils powerpc 4.6.0+git+20161106-1 [275 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main powerpc grep powerpc 2.27-1 [145 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libc6-dev powerpc 2.24-7ubuntu2 [2014 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libc-dev-bin powerpc 2.24-7ubuntu2 [61.4 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main powerpc linux-libc-dev powerpc 4.9.0-11.12 [854 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main powerpc libgomp1 powerpc 6.2.1-7ubuntu1 [69.5 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main powerpc gcc-6-base powerpc 6.2.1-7ubuntu1 [17.7 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main powerpc libgcc1 powerpc 1:6.2.1-7ubuntu1 [26.9 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main powerpc libcc1-0 powerpc 6.2.1-7ubuntu1 [30.2 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main powerpc binutils powerpc 2.27.51.20161220-1ubuntu1 [2242 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main powerpc libatomic1 powerpc 6.2.1-7ubuntu1 [7454 B] Get:17 http://ftpmaster.internal/ubuntu zesty/main powerpc libasan3 powerpc 6.2.1-7ubuntu1 [269 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main powerpc libubsan0 powerpc 6.2.1-7ubuntu1 [105 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main powerpc g++-6 powerpc 6.2.1-7ubuntu1 [6250 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main powerpc libstdc++-6-dev powerpc 6.2.1-7ubuntu1 [1419 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main powerpc libgcc-6-dev powerpc 6.2.1-7ubuntu1 [556 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main powerpc gcc-6 powerpc 6.2.1-7ubuntu1 [6040 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main powerpc cpp-6 powerpc 6.2.1-7ubuntu1 [5520 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main powerpc libstdc++6 powerpc 6.2.1-7ubuntu1 [410 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc zlib1g powerpc 1:1.2.8.dfsg-4ubuntu1 [47.4 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libgmp10 powerpc 2:6.1.2+dfsg-1 [197 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libc6 powerpc 2.24-7ubuntu2 [2304 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main powerpc libuuid1 powerpc 2.29-1ubuntu2 [15.9 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main powerpc libblkid1 powerpc 2.29-1ubuntu2 [102 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main powerpc libfdisk1 powerpc 2.29-1ubuntu2 [130 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main powerpc libselinux1 powerpc 2.6-3 [61.2 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main powerpc util-linux powerpc 2.29-1ubuntu2 [825 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main powerpc mount powerpc 2.29-1ubuntu2 [123 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main powerpc perl-modules-5.24 all 5.24.1~rc4-1 [2663 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main powerpc libperl5.24 powerpc 5.24.1~rc4-1 [2849 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main powerpc perl powerpc 5.24.1~rc4-1 [219 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main powerpc perl-base powerpc 5.24.1~rc4-1 [1205 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main powerpc tar powerpc 1.29b-1.1 [206 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main powerpc base-passwd powerpc 3.5.42 [47.5 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main powerpc init-system-helpers all 1.46 [37.3 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libc-bin powerpc 2.24-7ubuntu2 [524 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main powerpc liblzma5 powerpc 5.2.2-1.2 [91.2 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main powerpc libapt-pkg5.0 powerpc 1.4~beta2 [744 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main powerpc adduser all 3.113+nmu3ubuntu5 [161 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main powerpc ubuntu-keyring all 2016.10.27 [16.6 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main powerpc apt powerpc 1.4~beta2 [1054 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main powerpc libapparmor1 powerpc 2.10.95-4ubuntu5.2 [28.1 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main powerpc libgpg-error0 powerpc 1.25-2 [33.5 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main powerpc libgcrypt20 powerpc 1.7.5-2 [340 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main powerpc libmount1 powerpc 2.29-1ubuntu2 [104 kB] Get:51 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libseccomp2 powerpc 2.3.1-2.1ubuntu1 [37.6 kB] Get:52 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc systemd powerpc 232-8 [2154 kB] Get:53 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libsystemd0 powerpc 232-8 [187 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main powerpc init powerpc 1.46 [5320 B] Get:55 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc systemd-sysv powerpc 232-8 [14.1 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main powerpc libsepol1 powerpc 2.6-2 [182 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main powerpc libustr-1.0-1 powerpc 1.0.4-6 [51.1 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main powerpc libsemanage-common all 2.6-1 [6832 B] Get:59 http://ftpmaster.internal/ubuntu zesty/main powerpc libsemanage1 powerpc 2.6-1 [69.8 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main powerpc libsmartcols1 powerpc 2.29-1ubuntu2 [62.9 kB] Get:61 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libudev1 powerpc 232-8 [52.7 kB] Get:62 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc multiarch-support powerpc 2.24-7ubuntu2 [6816 B] Get:63 http://ftpmaster.internal/ubuntu zesty/main powerpc tzdata all 2016j-2 [204 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main powerpc libdevmapper1.02.1 powerpc 2:1.02.136-1ubuntu1 [117 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main powerpc dmsetup powerpc 2:1.02.136-1ubuntu1 [65.5 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main powerpc libroken18-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [38.6 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main powerpc libasn1-8-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [130 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main powerpc libassuan0 powerpc 2.4.3-2 [30.2 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main powerpc libhogweed4 powerpc 3.3-1 [130 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main powerpc libnettle6 powerpc 3.3-1 [110 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main powerpc libgnutls30 powerpc 3.5.6-4ubuntu2 [497 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main powerpc libheimbase1-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [26.4 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main powerpc libhcrypto4-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [82.0 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main powerpc libwind0-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [47.2 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main powerpc libhx509-5-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [91.6 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main powerpc libsqlite3-0 powerpc 3.15.2-2 [424 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main powerpc libkrb5-26-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [174 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main powerpc libheimntlm0-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [14.8 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main powerpc libgssapi3-heimdal powerpc 1.7~git20160703+dfsg-1ubuntu1 [82.3 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main powerpc libksba8 powerpc 1.3.5-2 [80.0 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main powerpc libsasl2-modules-db powerpc 2.1.27~72-g88d82a3+dfsg-1 [14.5 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main powerpc libsasl2-2 powerpc 2.1.27~72-g88d82a3+dfsg-1 [43.7 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main powerpc libldap-2.4-2 powerpc 2.4.42+dfsg-2ubuntu5 [141 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main powerpc libnpth0 powerpc 1.3-1 [7660 B] Get:85 http://ftpmaster.internal/ubuntu zesty/main powerpc libslang2 powerpc 2.3.1-5ubuntu1 [371 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main powerpc libssl1.0.0 powerpc 1.0.2g-1ubuntu10 [717 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main powerpc pinentry-curses powerpc 1.0.0-1 [29.7 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main powerpc xz-utils powerpc 5.2.2-1.2 [83.0 kB] Get:89 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libgssapi-krb5-2 powerpc 1.15-1 [103 kB] Get:90 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libkrb5-3 powerpc 1.15-1 [240 kB] Get:91 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libkrb5support0 powerpc 1.15-1 [30.5 kB] Get:92 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libk5crypto3 powerpc 1.15-1 [84.5 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main powerpc libcurl3-gnutls powerpc 7.51.0-1ubuntu1 [170 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main powerpc apt-transport-https powerpc 1.4~beta2 [33.6 kB] Get:95 http://ftpmaster.internal/ubuntu zesty/main powerpc openssl powerpc 1.0.2g-1ubuntu10 [465 kB] Get:96 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc ca-certificates all 20161130 [193 kB] Get:97 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libpng16-16 powerpc 1.6.26-6 [163 kB] Get:98 http://ftpmaster.internal/ubuntu zesty/main powerpc cpp powerpc 4:6.2.1-1ubuntu1 [27.4 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main powerpc gcc powerpc 4:6.2.1-1ubuntu1 [5182 B] Get:100 http://ftpmaster.internal/ubuntu zesty/main powerpc g++ powerpc 4:6.2.1-1ubuntu1 [1480 B] Get:101 http://ftpmaster.internal/ubuntu zesty/main powerpc pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.5 MB in 1min 50s (446 kB/s) (Reading database ... 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Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13963 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_232-8_powerpc.deb ... Unpacking systemd-sysv (232-8) over (231-9git1) ... 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Preparing to unpack .../34-libpng16-16_1.6.26-6_powerpc.deb ... Unpacking libpng16-16:powerpc (1.6.26-6) over (1.6.25-1) ... Preparing to unpack .../35-cpp_4%3a6.2.1-1ubuntu1_powerpc.deb ... Unpacking cpp (4:6.2.1-1ubuntu1) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../36-gcc_4%3a6.2.1-1ubuntu1_powerpc.deb ... Removing old gcc doc directory. Unpacking gcc (4:6.2.1-1ubuntu1) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../37-g++_4%3a6.2.1-1ubuntu1_powerpc.deb ... Unpacking g++ (4:6.2.1-1ubuntu1) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../38-pkg-create-dbgsym_0.73_all.deb ... Unpacking pkg-create-dbgsym (0.73) over (0.72) ... Setting up libnpth0:powerpc (1.3-1) ... Setting up libgomp1:powerpc (6.2.1-7ubuntu1) ... Setting up libatomic1:powerpc (6.2.1-7ubuntu1) ... Setting up perl-modules-5.24 (5.24.1~rc4-1) ... Setting up libperl5.24:powerpc (5.24.1~rc4-1) ... Setting up libnettle6:powerpc (3.3-1) ... Setting up libcc1-0:powerpc (6.2.1-7ubuntu1) ... Setting up libasan3:powerpc (6.2.1-7ubuntu1) ... Setting up libssl1.0.0:powerpc (1.0.2g-1ubuntu10) ... Setting up libpng16-16:powerpc (1.6.26-6) ... Setting up tzdata (2016j-2) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 22 05:21:13 UTC 2016. Universal Time is now: Thu Dec 22 05:21:13 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (232-8) ... Setting up libubsan0:powerpc (6.2.1-7ubuntu1) ... Setting up libsasl2-modules-db:powerpc (2.1.27~72-g88d82a3+dfsg-1) ... Setting up linux-libc-dev:powerpc (4.9.0-11.12) ... Setting up libsasl2-2:powerpc (2.1.27~72-g88d82a3+dfsg-1) ... Setting up libroken18-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libksba8:powerpc (1.3.5-2) ... Setting up libdevmapper1.02.1:powerpc (2:1.02.136-1ubuntu1) ... Setting up libkrb5support0:powerpc (1.15-1) ... Setting up perl (5.24.1~rc4-1) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up libgmp10:powerpc (2:6.1.2+dfsg-1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up pkg-create-dbgsym (0.73) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up openssl (1.0.2g-1ubuntu10) ... Setting up libsqlite3-0:powerpc (3.15.2-2) ... Setting up dmsetup (2:1.02.136-1ubuntu1) ... Setting up binutils (2.27.51.20161220-1ubuntu1) ... Setting up cpp-6 (6.2.1-7ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu2) ... Setting up ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:powerpc (2.24-7ubuntu2) ... Setting up libslang2:powerpc (2.3.1-5ubuntu1) ... Setting up libassuan0:powerpc (2.4.3-2) ... Setting up cpp (4:6.2.1-1ubuntu1) ... Setting up libk5crypto3:powerpc (1.15-1) ... Setting up libgcc-6-dev:powerpc (6.2.1-7ubuntu1) ... Setting up libstdc++-6-dev:powerpc (6.2.1-7ubuntu1) ... Setting up libwind0-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up init (1.46) ... Setting up libasn1-8-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc-6 (6.2.1-7ubuntu1) ... Setting up libhogweed4:powerpc (3.3-1) ... Setting up g++-6 (6.2.1-7ubuntu1) ... Setting up pinentry-curses (1.0.0-1) ... Setting up libkrb5-3:powerpc (1.15-1) ... Setting up libkrb5-26-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libgnutls30:powerpc (3.5.6-4ubuntu2) ... Setting up gcc (4:6.2.1-1ubuntu1) ... Setting up libgssapi-krb5-2:powerpc (1.15-1) ... Setting up g++ (4:6.2.1-1ubuntu1) ... Setting up libgssapi3-heimdal:powerpc (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libldap-2.4-2:powerpc (2.4.42+dfsg-2ubuntu5) ... Setting up libcurl3-gnutls:powerpc (7.51.0-1ubuntu1) ... Setting up apt-transport-https (1.4~beta2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11768050', 'powerpc', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=powerpc', '--dist=zesty-proposed', '--purge=never', '--nolog', 'clustalo_1.2.4-1.dsc'] Initiating build PACKAGEBUILD-11768050 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-53-powerpc64-smp #74-Ubuntu SMP Fri Dec 2 16:41:54 UTC 2016 ppc sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on fisher07.buildd +==============================================================================+ | clustalo 1.2.4-1 (powerpc) 22 Dec 2016 00:21 | +==============================================================================+ Package: clustalo Version: 1.2.4-1 Source Version: 1.2.4-1 Distribution: zesty-proposed Machine Architecture: powerpc Host Architecture: powerpc Build Architecture: powerpc I: NOTICE: Log filtering will replace 'build/clustalo-t7xfLB/clustalo-1.2.4' with '<>' I: NOTICE: Log filtering will replace 'build/clustalo-t7xfLB' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11768050/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalo_1.2.4-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-JlYaKH/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-JlYaKH/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JlYaKH/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-JlYaKH/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JlYaKH/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-JlYaKH/apt_archive ./ Packages [529 B] Fetched 2862 B in 0s (179 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 772 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-JlYaKH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 772 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 10), dh-autoreconf, dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common dpkg-deb: building package 'sbuild-build-depends-clustalo-dummy' in '/<>/resolver-XwgLNW/apt_archive/sbuild-build-depends-clustalo-dummy.deb'. Ign:1 copy:/<>/resolver-XwgLNW/apt_archive ./ InRelease Get:2 copy:/<>/resolver-XwgLNW/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-XwgLNW/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-XwgLNW/apt_archive ./ Sources [261 B] Get:5 copy:/<>/resolver-XwgLNW/apt_archive ./ Packages [585 B] Fetched 2965 B in 0s (198 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clustalo build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-3.9 libcroco3 libdatrie1 libedit2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgraphite2-3 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libllvm3.9 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sphinx-common ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur fonts-liberation libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev xml-core libmail-sendmail-perl python-sphinx | python3-sphinx The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-3.9 libcroco3 libdatrie1 libedit2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgraphite2-3 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libllvm3.9 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sbuild-build-depends-clustalo-dummy sphinx-common ucf x11-common 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 44.2 MB of archives. After this operation, 191 MB of additional disk space will be used. Get:1 copy:/<>/resolver-XwgLNW/apt_archive ./ sbuild-build-depends-clustalo-dummy 0.invalid.0 [826 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main powerpc libxau6 powerpc 1:1.0.8-1 [8284 B] Get:3 http://ftpmaster.internal/ubuntu zesty/main powerpc libxdmcp6 powerpc 1:1.1.2-1.1 [10.6 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main powerpc libxcb1 powerpc 1.11.1-1ubuntu1 [35.8 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main powerpc libx11-data all 2:1.6.3-1ubuntu3 [113 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main powerpc libx11-6 powerpc 2:1.6.3-1ubuntu3 [518 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main powerpc libxext6 powerpc 2:1.3.3-1 [26.2 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main powerpc groff-base powerpc 1.22.3-9 [1194 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main powerpc libbsd0 powerpc 0.8.3-1 [50.6 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main powerpc bsdmainutils powerpc 9.0.12ubuntu1 [172 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main powerpc libpipeline1 powerpc 1.4.1-2 [24.2 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc man-db powerpc 2.7.6.1-2 [876 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main powerpc fonts-dejavu-core all 2.37-1 [1041 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main powerpc ucf all 3.0036 [52.9 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main powerpc fontconfig-config all 2.11.94-0ubuntu2 [49.9 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main powerpc libexpat1 powerpc 2.2.0-1 [63.9 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main powerpc libfreetype6 powerpc 2.6.3-3ubuntu1 [280 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main powerpc libfontconfig1 powerpc 2.11.94-0ubuntu2 [124 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main powerpc fontconfig powerpc 2.11.94-0ubuntu2 [176 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main powerpc x11-common all 1:7.7+16ubuntu2 [21.9 kB] Get:21 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kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libedit2 powerpc 3.1-20160903-2 [66.5 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main powerpc libglib2.0-0 powerpc 2.51.0-2 [986 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main powerpc libicu57 powerpc 57.1-5 [7477 kB] Get:34 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libxml2 powerpc 2.9.4+dfsg1-2.1 [572 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main powerpc libsigsegv2 powerpc 2.10-5 [13.6 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main powerpc m4 powerpc 1.4.17-5 [185 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main powerpc autoconf all 2.69-10 [321 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main powerpc autotools-dev all 20161112.1 [39.5 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main powerpc automake all 1:1.15-5ubuntu1 [509 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main powerpc autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:41 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http://ftpmaster.internal/ubuntu zesty/main powerpc libpango-1.0-0 powerpc 1.40.3-3 [139 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main powerpc libgraphite2-3 powerpc 1.3.9-2 [63.8 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main powerpc libharfbuzz0b powerpc 1.2.7-1 [159 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main powerpc libpangoft2-1.0-0 powerpc 1.40.3-3 [30.6 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main powerpc libpangocairo-1.0-0 powerpc 1.40.3-3 [19.2 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main powerpc libpathplan4 powerpc 2.38.0-15ubuntu2 [23.5 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main powerpc libgvc6 powerpc 2.38.0-15ubuntu2 [532 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main powerpc libgvpr2 powerpc 2.38.0-15ubuntu2 [152 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main powerpc libxt6 powerpc 1:1.1.5-1 [132 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main powerpc libxmu6 powerpc 2:1.1.2-2 [40.3 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main powerpc libxaw7 powerpc 2:1.0.13-1 [146 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main powerpc graphviz powerpc 2.38.0-15ubuntu2 [612 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/universe powerpc libargtable2-0 powerpc 13-1 [13.1 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/universe powerpc libargtable2-docs all 13-1 [2618 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/universe powerpc libargtable2-dev powerpc 13-1 [50.7 kB] Get:86 http://ftpmaster.internal/ubuntu zesty-proposed/main powerpc libjs-jquery all 3.1.1-2 [151 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main powerpc libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main powerpc libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main powerpc sphinx-common all 1.4.9-2 [350 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.2 MB in 1min 28s (499 kB/s) Selecting previously unselected package libxau6:powerpc. 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Unpacking libxmu6:powerpc (2:1.1.2-2) ... Selecting previously unselected package libxaw7:powerpc. Preparing to unpack .../79-libxaw7_2%3a1.0.13-1_powerpc.deb ... Unpacking libxaw7:powerpc (2:1.0.13-1) ... Selecting previously unselected package graphviz. Preparing to unpack .../80-graphviz_2.38.0-15ubuntu2_powerpc.deb ... Unpacking graphviz (2.38.0-15ubuntu2) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../81-libargtable2-0_13-1_powerpc.deb ... Unpacking libargtable2-0 (13-1) ... Selecting previously unselected package libargtable2-docs. Preparing to unpack .../82-libargtable2-docs_13-1_all.deb ... Unpacking libargtable2-docs (13-1) ... Selecting previously unselected package libargtable2-dev. Preparing to unpack .../83-libargtable2-dev_13-1_powerpc.deb ... Unpacking libargtable2-dev (13-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../84-libjs-jquery_3.1.1-2_all.deb ... Unpacking libjs-jquery (3.1.1-2) ... 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Setting up libarchive-zip-perl (1.59-1) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:powerpc (2.1-3.1) ... Setting up libsigsegv2:powerpc (2.10-5) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:powerpc (2.51.0-2) ... No schema files found: doing nothing. Setting up libllvm3.9:powerpc (1:3.9.1-1ubuntu1) ... Setting up libjs-sphinxdoc (1.4.9-2) ... Setting up libdatrie1:powerpc (0.2.10-4) ... Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libjpeg-turbo8:powerpc (1.5.1-0ubuntu1) ... Setting up libpipeline1:powerpc (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:powerpc (57.1-5) ... Setting up libbsd0:powerpc (0.8.3-1) ... Setting up ucf (3.0036) ... Setting up libxml2:powerpc (2.9.4+dfsg1-2.1) ... Setting up libfreetype6:powerpc (2.6.3-3ubuntu1) ... Setting up libmagic-mgc (1:5.29-2) ... Setting up libmagic1:powerpc (1:5.29-2) ... Setting up libgraphite2-3:powerpc (1.3.9-2) ... Setting up libcroco3:powerpc (0.6.11-2) ... Setting up libpixman-1-0:powerpc (0.34.0-1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:powerpc (0.9.3-5.2ubuntu1) ... Setting up libclang1-3.9:powerpc (1:3.9.1-1ubuntu1) ... Processing triggers for systemd (232-8) ... Setting up libltdl7:powerpc (2.4.6-2) ... Setting up sphinx-common (1.4.9-2) ... Setting up libargtable2-dev (13-1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:powerpc (1:1.1.2-1.1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+16ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libcdt5 (2.38.0-15ubuntu2) ... Setting up libx11-data (2:1.6.3-1ubuntu3) ... Setting up libxau6:powerpc (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libcgraph6 (2.38.0-15ubuntu2) ... Setting up libwebp6:powerpc (0.5.1-4) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up libjpeg8:powerpc (8c-2ubuntu8) ... Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libgvpr2 (2.38.0-15ubuntu2) ... Setting up doxygen (1.8.12-1ubuntu1) ... Setting up libharfbuzz0b:powerpc (1.2.7-1) ... Setting up libtiff5:powerpc (4.0.7-3) ... Setting up autoconf (2.69-10) ... Setting up libthai0:powerpc (0.1.26-1) ... Setting up file (1:5.29-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:powerpc (2:1.0.9-1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:powerpc (1.11.1-1ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up libfontconfig1:powerpc (2.11.94-0ubuntu2) ... Setting up libsm6:powerpc (2:1.2.2-1) ... Setting up libxcb-render0:powerpc (1.11.1-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:powerpc (2:1.6.3-1ubuntu3) ... Setting up libxcb-shm0:powerpc (1.11.1-1ubuntu1) ... Setting up libxpm4:powerpc (1:3.5.11-1) ... Setting up libxt6:powerpc (1:1.1.5-1) ... Setting up libxrender1:powerpc (1:0.9.10-1) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:powerpc (2:1.3.3-1) ... Setting up libgd3:powerpc (2.2.3-87-gd0fec80-3) ... Setting up libxmu6:powerpc (2:1.1.2-2) ... Setting up libpango-1.0-0:powerpc (1.40.3-3) ... Setting up libxaw7:powerpc (2:1.0.13-1) ... Setting up libcairo2:powerpc (1.14.8-1) ... Setting up libpangoft2-1.0-0:powerpc (1.40.3-3) ... Setting up libpangocairo-1.0-0:powerpc (1.40.3-3) ... Setting up libgvc6 (2.38.0-15ubuntu2) ... Setting up graphviz (2.38.0-15ubuntu2) ... Setting up dh-autoreconf (12) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up dh-linktree (0.4) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up sbuild-build-depends-clustalo-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for systemd (232-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-53-powerpc64-smp powerpc (ppc) Toolchain package versions: binutils_2.27.51.20161220-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.1-7ubuntu1 gcc-6_6.2.1-7ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.2.1-7ubuntu1 libstdc++6_6.2.1-7ubuntu1 linux-libc-dev_4.9.0-11.12 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 apt_1.4~beta2 apt-transport-https_1.4~beta2 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu9 base-passwd_3.5.42 bash_4.4-2ubuntu1 binutils_2.27.51.20161220-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161130 coreutils_8.25-2ubuntu2 cpp_4:6.2.1-1ubuntu1 cpp-6_6.2.1-7ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_12 dh-linktree_0.4 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1ubuntu1 doxygen_1.8.12-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 fontconfig_2.11.94-0ubuntu2 fontconfig-config_2.11.94-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:6.2.1-1ubuntu1 g++-6_6.2.1-7ubuntu1 gcc_4:6.2.1-1ubuntu1 gcc-6_6.2.1-7ubuntu1 gcc-6-base_6.2.1-7ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 graphviz_2.38.0-15ubuntu2 grep_2.27-1 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta2 libarchive-zip-perl_1.59-1 libargtable2-0_13-1 libargtable2-dev_13-1 libargtable2-docs_13-1 libasan3_6.2.1-7ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.2.1-7ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-7ubuntu2 libc-dev-bin_2.24-7ubuntu2 libc6_2.24-7ubuntu2 libc6-dev_2.24-7ubuntu2 libcairo2_1.14.8-1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.1-7ubuntu1 libcdt5_2.38.0-15ubuntu2 libcgraph6_2.38.0-15ubuntu2 libclang1-3.9_1:3.9.1-1ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdatrie1_0.2.10-4 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libedit2_3.1-20160903-2 libexpat1_2.2.0-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfontconfig1_2.11.94-0ubuntu2 libfreetype6_2.6.3-3ubuntu1 libgcc-6-dev_6.2.1-7ubuntu1 libgcc1_1:6.2.1-7ubuntu1 libgcrypt20_1.7.5-2 libgd3_2.2.3-87-gd0fec80-3 libgdbm3_1.8.3-14 libglib2.0-0_2.51.0-2 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.6-4ubuntu2 libgomp1_6.2.1-7ubuntu1 libgpg-error0_1.25-2 libgraphite2-3_1.3.9-2 libgssapi-krb5-2_1.15-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libgvc6_2.38.0-15ubuntu2 libgvpr2_2.38.0-15ubuntu2 libharfbuzz0b_1.2.7-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libice6_2:1.0.9-1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libjbig0_2.1-3.1 libjpeg-turbo8_1.5.1-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_3.1.1-2 libjs-sphinxdoc_1.4.9-2 libjs-underscore_1.8.3~dfsg-1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 libllvm3.9_1:3.9.1-1ubuntu1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpango-1.0-0_1.40.3-3 libpangocairo-1.0-0_1.40.3-3 libpangoft2-1.0-0_1.40.3-3 libpathplan4_2.38.0-15ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng16-16_1.6.26-6 libprocps6_2:3.3.12-1ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.15.2-2 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.2.1-7ubuntu1 libstdc++6_6.2.1-7ubuntu1 libsystemd0_232-8 libtasn1-6_4.9-4 libthai-data_0.1.26-1 libthai0_0.1.26-1 libtiff5_4.0.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.2.1-7ubuntu1 libudev1_232-8 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwebp6_0.5.1-4 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libx11-6_2:1.6.3-1ubuntu3 libx11-data_2:1.6.3-1ubuntu3 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxml2_2.9.4+dfsg1-2.1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 linux-libc-dev_4.9.0-11.12 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_1.0.0-1 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-clustalo-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 sphinx-common_1.4.9-2 systemd_232-8 systemd-sysv_232-8 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 ucf_3.0036 util-linux_2.29-1ubuntu2 x11-common_1:7.7+16ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Dec 21 20:08:05 2016 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalo_1.2.4-1.dsc dpkg-source: info: extracting clustalo in clustalo-1.2.4 dpkg-source: info: unpacking clustalo_1.2.4.orig.tar.gz dpkg-source: info: unpacking clustalo_1.2.4-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalo dpkg-buildpackage: info: source version 1.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clustalo-1.2.4 dpkg-buildpackage: info: host architecture powerpc fakeroot debian/rules clean dh clean --with autoreconf --with linktree dh_testdir dh_auto_clean dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f _configs.sed rm -rf doc make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with autoreconf --with linktree dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:133: installing './compile' configure.ac:115: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=powerpc-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/powerpc-linux-gnu --libexecdir=\${prefix}/lib/powerpc-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Welcome to Clustal Omega - version 1.2.4 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 IMMMMS MMMMM, ~MMMMN ,MMMMM =MMMMM MMMMM ?MMMMM +MMMMM MMMMMS MMMMM MMMMM MMMMM: MMMMM MMMMM+ MMMMM MMMMM~ MMMMM MMMMM MMMMMZ MMMMM MMMMM ,MMMMZ MMMM8 MMMM+ MMMMS MMMM, MMMMO MMMM ,N SMMM MMM8 +8 ,M7 M+ M+ :M8 ,MMMMMMMMMMMMI MMMMMMMMMMMM8 ,MMMMMMMMMMMM8 MMMMMMMMMMMM8 ,MMMMMMMMMMMMN MMMMMMMMMMMM8 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu checking whether make sets $(MAKE)... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert powerpc-unknown-linux-gnu file names to powerpc-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for memory.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for inline... inline checking for log in -lm... yes checking for log2 in -lm... yes checking argtable2.h usability... yes checking argtable2.h presence... yes checking for argtable2.h... yes checking for arg_parse in -largtable2... yes checking for OpenMP flag of C compiler... -fopenmp checking whether byte ordering is bigendian... yes configure: WARNING: Clustal Omega hasn't been tested on Big-Endian machines...expecting trouble! checking for ntohs... yes checking for ntohl... yes checking for ntons... no checking for ntonl... no checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 4 checking size of unsigned long long... 8 checking for stroul... no checking for strtoull... yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for off_t... yes checking size of fpos_t... 12 checking if malloc debugging is wanted... no checking whether to build with debug information... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating clustalo.pc config.status: creating Doxyfile config.status: creating src/clustal/Makefile config.status: creating src/hhalign/Makefile config.status: creating src/kmpp/Makefile config.status: creating src/squid/Makefile config.status: creating src/config.h config.status: executing src/clustal-omega-config.h commands config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-recursive make[3]: Entering directory '/<>/src' Making all in hhalign make[4]: Entering directory '/<>/src/hhalign' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hhalign.lo hhalign.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -fPIC -DPIC -o .libs/hhalign.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -fPIE -o hhalign.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libhhalign.la hhalign.lo -largtable2 -lm libtool: link: ar cru .libs/libhhalign.a .libs/hhalign.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhhalign.a libtool: link: ( cd ".libs" && rm -f "libhhalign.la" && ln -s "../libhhalign.la" "libhhalign.la" ) make[4]: Leaving directory '/<>/src/hhalign' Making all in squid make[4]: Entering directory '/<>/src/squid' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o a2m.lo a2m.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.lo aligneval.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o alignio.lo alignio.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal.lo clustal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIC -DPIC -o .libs/aligneval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIE -o a2m.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIE -o aligneval.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.lo cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIE -o clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -fPIC -DPIC -o .libs/cluster.o libtool: compile: gcc 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-D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.c -fPIE -o progress.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o symmatrix.lo symmatrix.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o tree.lo tree.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -fPIC -DPIC -o .libs/symmatrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -fPIC -DPIC -o .libs/tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -fPIC -DPIC -o .libs/util.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -fPIE -o tree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -fPIE -o util.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -fPIE -o symmatrix.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.c -fPIE -o seq.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o weights.lo weights.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -fPIC -DPIC -o .libs/weights.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -fPIE -o weights.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link gcc -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libclustal.la hhalign_wrapper.lo ktuple_pair.lo list.lo log.lo muscle_upgma.lo muscle_tree.lo mbed.lo pair_dist.lo progress.lo seq.lo symmatrix.lo tree.lo util.lo weights.lo -largtable2 -lm libtool: link: ar cru .libs/libclustal.a .libs/hhalign_wrapper.o .libs/ktuple_pair.o .libs/list.o .libs/log.o .libs/muscle_upgma.o .libs/muscle_tree.o .libs/mbed.o .libs/pair_dist.o .libs/progress.o .libs/seq.o .libs/symmatrix.o .libs/tree.o .libs/util.o .libs/weights.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libclustal.a libtool: link: ( cd ".libs" && rm -f "libclustal.la" && ln -s "../libclustal.la" "libclustal.la" ) make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal-omega.lo clustal-omega.c g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o mymain.o mymain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -fPIC -DPIC -o .libs/clustal-omega.o clustal-omega.c: In function ‘PrintLongVersion’: clustal-omega.c:152:49: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] PACKAGE_VERSION, PACKAGE_CODENAME, __DATE__); ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -fPIE -o clustal-omega.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -static -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libclustalo.la -rpath /usr/lib/powerpc-linux-gnu clustal-omega.lo clustal/libclustal.la hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la -largtable2 -lm libtool: link: (cd .libs/libclustalo.lax/libclustal.a && ar x "/<>/src/clustal/.libs/libclustal.a") libtool: link: (cd .libs/libclustalo.lax/libhhalign.a && ar x "/<>/src/hhalign/.libs/libhhalign.a") libtool: link: (cd .libs/libclustalo.lax/libsquid.a && ar x "/<>/src/squid/.libs/libsquid.a") libtool: link: (cd .libs/libclustalo.lax/libkmpp.a && ar x "/<>/src/kmpp/.libs/libkmpp.a") libtool: link: ar cru .libs/libclustalo.a clustal-omega.o .libs/libclustalo.lax/libclustal.a/hhalign_wrapper.o .libs/libclustalo.lax/libclustal.a/ktuple_pair.o .libs/libclustalo.lax/libclustal.a/list.o .libs/libclustalo.lax/libclustal.a/log.o .libs/libclustalo.lax/libclustal.a/mbed.o .libs/libclustalo.lax/libclustal.a/muscle_tree.o .libs/libclustalo.lax/libclustal.a/muscle_upgma.o .libs/libclustalo.lax/libclustal.a/pair_dist.o .libs/libclustalo.lax/libclustal.a/progress.o .libs/libclustalo.lax/libclustal.a/seq.o .libs/libclustalo.lax/libclustal.a/symmatrix.o .libs/libclustalo.lax/libclustal.a/tree.o .libs/libclustalo.lax/libclustal.a/util.o .libs/libclustalo.lax/libclustal.a/weights.o .libs/libclustalo.lax/libhhalign.a/hhalign.o .libs/libclustalo.lax/libsquid.a/a2m.o .libs/libclustalo.lax/libsquid.a/aligneval.o .libs/libclustalo.lax/libsquid.a/alignio.o .libs/libclustalo.lax/libsquid.a/clustal.o .libs/libclustalo.lax/libsquid.a/cluster.o .libs/libclustalo.lax/libsquid.a/dayhoff.o .libs/libclustalo.lax/libsquid.a/eps.o .libs/libclustalo.lax/libsquid.a/file.o .libs/libclustalo.lax/libsquid.a/getopt.o .libs/libclustalo.lax/libsquid.a/gki.o .libs/libclustalo.lax/libsquid.a/gsi.o .libs/libclustalo.lax/libsquid.a/gsi64.o .libs/libclustalo.lax/libsquid.a/hsregex.o .libs/libclustalo.lax/libsquid.a/iupac.o .libs/libclustalo.lax/libsquid.a/msa.o .libs/libclustalo.lax/libsquid.a/msf.o .libs/libclustalo.lax/libsquid.a/phylip.o .libs/libclustalo.lax/libsquid.a/revcomp.o .libs/libclustalo.lax/libsquid.a/rk.o .libs/libclustalo.lax/libsquid.a/selex.o .libs/libclustalo.lax/libsquid.a/seqencode.o .libs/libclustalo.lax/libsquid.a/shuffle.o .libs/libclustalo.lax/libsquid.a/sqerror.o .libs/libclustalo.lax/libsquid.a/sqio.o .libs/libclustalo.lax/libsquid.a/squidcore.o .libs/libclustalo.lax/libsquid.a/sre_ctype.o .libs/libclustalo.lax/libsquid.a/sre_math.o .libs/libclustalo.lax/libsquid.a/sre_random.o .libs/libclustalo.lax/libsquid.a/sre_string.o .libs/libclustalo.lax/libsquid.a/ssi.o .libs/libclustalo.lax/libsquid.a/stack.o .libs/libclustalo.lax/libsquid.a/stockholm.o .libs/libclustalo.lax/libsquid.a/stopwatch.o .libs/libclustalo.lax/libsquid.a/translate.o .libs/libclustalo.lax/libsquid.a/types.o .libs/libclustalo.lax/libsquid.a/vectorops.o .libs/libclustalo.lax/libsquid.a/weight.o .libs/libclustalo.lax/libkmpp.a/KMeans.o .libs/libclustalo.lax/libkmpp.a/KmTree.o .libs/libclustalo.lax/libkmpp.a/KmUtils.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libclustalo.a libtool: link: rm -fr .libs/libclustalo.lax libtool: link: ( cd ".libs" && rm -f "libclustalo.la" && ln -s "../libclustalo.la" "libclustalo.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o clustalo main.o mymain.o libclustalo.la -largtable2 -lm libtool: link: g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o clustalo main.o mymain.o ./.libs/libclustalo.a /usr/lib/powerpc-linux-gnu/libargtable2.so -lm -fopenmp ./.libs/libclustalo.a(clustal-omega.o): In function `AlnToHHMFile': ./src/clustal-omega.c:393: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' Making check in hhalign make[3]: Entering directory '/<>/src/hhalign' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/hhalign' Making check in squid make[3]: Entering directory '/<>/src/squid' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/squid' Making check in kmpp make[3]: Entering directory '/<>/src/kmpp' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/kmpp' Making check in clustal make[3]: Entering directory '/<>/src/clustal' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/clustal' make[3]: Entering directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --with autoreconf --with linktree dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' dh_auto_install -a make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' Making install in hhalign make[4]: Entering directory '/<>/src/hhalign' make[5]: Entering directory '/<>/src/hhalign' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/hhalign' /usr/bin/install -c -m 644 general.h hhfunc.h '/<>/debian/tmp/usr/include/clustalo/hhalign' make[5]: Leaving directory '/<>/src/hhalign' make[4]: Leaving directory '/<>/src/hhalign' Making install in squid make[4]: Entering directory '/<>/src/squid' make[5]: Entering directory '/<>/src/squid' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/squid' /usr/bin/install -c -m 644 gki.h gsi64.h msa.h rk.h squid.h stopwatch.h sqfuncs.h sre_random.h ssi.h stockholm.h vectorops.h version.h '/<>/debian/tmp/usr/include/clustalo/squid' make[5]: Leaving directory '/<>/src/squid' make[4]: Leaving directory '/<>/src/squid' Making install in kmpp make[4]: Entering directory '/<>/src/kmpp' make[5]: Entering directory '/<>/src/kmpp' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/kmpp' make[4]: Leaving directory '/<>/src/kmpp' Making install in clustal make[4]: Entering directory '/<>/src/clustal' make[5]: Entering directory '/<>/src/clustal' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/clustal' /usr/bin/install -c -m 644 hhalign_wrapper.h ktuple_pair.h log.h mbed.h muscle_tree.h pair_dist.h progress.h seq.h symmatrix.h tree.h util.h weights.h '/<>/debian/tmp/usr/include/clustalo/clustal' make[5]: Leaving directory '/<>/src/clustal' make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' make[5]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/' /bin/bash ../libtool --mode=install /usr/bin/install -c libclustalo.la '/<>/debian/tmp/usr/lib/powerpc-linux-gnu' /usr/bin/install -c -m 644 clustal-omega-config.h clustal-omega.h '/<>/debian/tmp/usr/include/clustalo/' libtool: install: /usr/bin/install -c .libs/libclustalo.lai /<>/debian/tmp/usr/lib/powerpc-linux-gnu/libclustalo.la libtool: install: /usr/bin/install -c .libs/libclustalo.a /<>/debian/tmp/usr/lib/powerpc-linux-gnu/libclustalo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/powerpc-linux-gnu/libclustalo.a libtool: install: ranlib /<>/debian/tmp/usr/lib/powerpc-linux-gnu/libclustalo.a libtool: warning: remember to run 'libtool --finish /usr/lib/powerpc-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c clustalo '/<>/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c clustalo /<>/debian/tmp/usr/bin/clustalo make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/clustal-omega' /bin/mkdir -p '/<>/debian/tmp/usr/lib/powerpc-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/clustal-omega' /usr/bin/install -c -m 644 clustalo.pc '/<>/debian/tmp/usr/lib/powerpc-linux-gnu/pkgconfig' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' rm -rf debian/tmp/usr/lib/pkgconfig rm -f debian/tmp/usr/lib/*/libclustalo.la mv debian/tmp/usr/include debian/libclustalo-dev/usr mv debian/tmp/usr/lib debian/libclustalo-dev/usr mv debian/tmp/usr/bin debian/clustalo/usr make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_linktree -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: clustalo libclustalo-dev dh_strip debug symbol extraction: packages to act on: clustalo libclustalo-dev dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libclustalo-dev has no unstripped objects, ignoring find: ‘/<>/debian/libclustalo-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/debian/libclustalo-dev-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: Depends field of package libclustalo-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform powerpc: clustalo libclustalo-dev dh_gencontrol debug symbol wrapper: packages to act on: clustalo libclustalo-dev dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package clustalo (pkgdir debian/clustalo, ddeb package dir debian/clustalo-dbgsym) dh_gencontrol debug symbol wrapper: building clustalo-dbgsym_1.2.4-1_powerpc.ddeb dpkg-deb: building package 'clustalo-dbgsym' in '../clustalo-dbgsym_1.2.4-1_powerpc.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile clustalo-dbgsym_1.2.4-1_powerpc.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/libclustalo-dev-dbgsym, skipping package libclustalo-dev dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libclustalo-dev (in debian/libclustalo-dev); do_strip: , oemstrip: pkgstriptranslations: processing clustalo (in debian/clustalo); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libclustalo-dev/DEBIAN/control, package libclustalo-dev, directory debian/libclustalo-dev pkgstripfiles: processing control file: debian/clustalo/DEBIAN/control, package clustalo, directory debian/clustalo INFO: pkgstripfiles: waiting for lock (libclustalo-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalo ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalo' in '../clustalo_1.2.4-1_powerpc.deb'. Searching for duplicated docs in dependency clustalo... symlinking changelog.Debian.gz in libclustalo-dev to file in clustalo pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclustalo-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclustalo-dev' in '../libclustalo-dev_1.2.4-1_powerpc.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clustalo_1.2.4-1_powerpc.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clustalo-1.2.4 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161222-0024 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalo_1.2.4-1_powerpc.changes: --------------------------------- Format: 1.8 Date: Wed, 21 Dec 2016 21:06:08 +0100 Source: clustalo Binary: clustalo libclustalo-dev libclustalo-doc Architecture: powerpc Version: 1.2.4-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clustalo - General purpose multiple sequence alignment program for proteins libclustalo-dev - library to embed Clustal Omega libclustalo-doc - API documentation for library to embed Clustal Omega Changes: clustalo (1.2.4-1) unstable; urgency=medium . * New upstream version * d/watch: version=4 * debhelper 10 Checksums-Sha1: 88ef900c6861cd29aad42a4f8635e5efe808eb2a 449982 clustalo-dbgsym_1.2.4-1_powerpc.ddeb 5c2c36c5b6f0b59f8fb74a9d378af09b69b9015d 233192 clustalo_1.2.4-1_powerpc.deb 0a11fdbd522c8df8db85ff3842015654d0f0d2b5 272270 libclustalo-dev_1.2.4-1_powerpc.deb Checksums-Sha256: 43fc204f076d302af86ef46c1c5ae93b6a12cbc24dbbf6a3f37f7090f3728074 449982 clustalo-dbgsym_1.2.4-1_powerpc.ddeb f82f03fd32c80a51055d215162cae70d98b47a9f473466b1a28ae6fb5f55f048 233192 clustalo_1.2.4-1_powerpc.deb a2b9d05c2e79b569de16f5e364b3bcf6491e8f7b1e157e872cdd9319a32cc8a1 272270 libclustalo-dev_1.2.4-1_powerpc.deb Files: ee654bda4d96bea4c2ae96eec4a77220 449982 science extra clustalo-dbgsym_1.2.4-1_powerpc.ddeb 339e4d0acbeb4c625debcba347757899 233192 science optional clustalo_1.2.4-1_powerpc.deb a343372f91e4ae3c6e5552bb6f2cf890 272270 libdevel optional libclustalo-dev_1.2.4-1_powerpc.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalo_1.2.4-1_powerpc.deb ---------------------------- new debian package, version 2.0. size 233192 bytes: control archive=816 bytes. 730 bytes, 15 lines control 406 bytes, 6 lines md5sums Package: clustalo Version: 1.2.4-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 672 Depends: libargtable2-0 (>= 7), libc6 (>= 2.4), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.clustal.org/omega/ Description: General purpose multiple sequence alignment program for proteins Clustal-Omega is a general purpose multiple sequence alignment (MSA) program for dna/rna/proteins. It produces high quality MSAs and is capable of handling data-sets of hundreds of thousands of sequences in reasonable time. drwxr-xr-x root/root 0 2016-12-21 15:06 ./ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/bin/ -rwxr-xr-x root/root 658268 2016-12-21 15:06 ./usr/bin/clustalo drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/doc/clustalo/ -rw-r--r-- root/root 10994 2013-08-27 08:07 ./usr/share/doc/clustalo/README.gz -rw-r--r-- root/root 830 2016-12-21 15:06 ./usr/share/doc/clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2016-12-21 15:06 ./usr/share/doc/clustalo/copyright drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/doc/clustalo/examples/ -rw-r--r-- root/root 2269 2016-12-21 15:06 ./usr/share/doc/clustalo/examples/example.fa drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/man/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/man/man1/ -rw-r--r-- root/root 1083 2016-12-21 15:06 ./usr/share/man/man1/clustalo.1.gz libclustalo-dev_1.2.4-1_powerpc.deb ----------------------------------- new debian package, version 2.0. size 272270 bytes: control archive=1462 bytes. 586 bytes, 16 lines control 2244 bytes, 31 lines md5sums Package: libclustalo-dev Source: clustalo Version: 1.2.4-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1012 Depends: libargtable2-dev, clustalo (= 1.2.4-1) Suggests: libclustalo-doc Section: libdevel Priority: optional Homepage: http://www.clustal.org/omega/ Description: library to embed Clustal Omega This package contains headers and libraries to include Clustal Omega in a program. It provides clustal usage with an API. drwxr-xr-x root/root 0 2016-12-21 15:06 ./ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/include/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/include/clustalo/ -rw-r--r-- root/root 9523 2016-12-21 15:06 ./usr/include/clustalo/clustal-omega-config.h -rw-r--r-- root/root 4740 2016-12-21 15:06 ./usr/include/clustalo/clustal-omega.h drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/include/clustalo/clustal/ -rw-r--r-- root/root 1159 2016-12-21 15:06 ./usr/include/clustalo/clustal/hhalign_wrapper.h -rw-r--r-- root/root 1251 2016-12-21 15:06 ./usr/include/clustalo/clustal/ktuple_pair.h -rw-r--r-- root/root 1787 2016-12-21 15:06 ./usr/include/clustalo/clustal/log.h -rw-r--r-- root/root 866 2016-12-21 15:06 ./usr/include/clustalo/clustal/mbed.h -rw-r--r-- root/root 4112 2016-12-21 15:06 ./usr/include/clustalo/clustal/muscle_tree.h -rw-r--r-- root/root 1303 2016-12-21 15:06 ./usr/include/clustalo/clustal/pair_dist.h -rw-r--r-- root/root 1257 2016-12-21 15:06 ./usr/include/clustalo/clustal/progress.h -rw-r--r-- root/root 4032 2016-12-21 15:06 ./usr/include/clustalo/clustal/seq.h -rw-r--r-- root/root 2310 2016-12-21 15:06 ./usr/include/clustalo/clustal/symmatrix.h -rw-r--r-- root/root 1066 2016-12-21 15:06 ./usr/include/clustalo/clustal/tree.h -rw-r--r-- root/root 2308 2016-12-21 15:06 ./usr/include/clustalo/clustal/util.h -rw-r--r-- root/root 741 2016-12-21 15:06 ./usr/include/clustalo/clustal/weights.h drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/include/clustalo/hhalign/ -rw-r--r-- root/root 2961 2016-12-21 15:06 ./usr/include/clustalo/hhalign/general.h -rw-r--r-- root/root 859 2016-12-21 15:06 ./usr/include/clustalo/hhalign/hhfunc.h drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/include/clustalo/squid/ -rw-r--r-- root/root 1381 2016-12-21 15:06 ./usr/include/clustalo/squid/gki.h -rw-r--r-- root/root 3473 2016-12-21 15:06 ./usr/include/clustalo/squid/gsi64.h -rw-r--r-- root/root 13442 2016-12-21 15:06 ./usr/include/clustalo/squid/msa.h -rw-r--r-- root/root 1264 2016-12-21 15:06 ./usr/include/clustalo/squid/rk.h -rw-r--r-- root/root 10390 2016-12-21 15:06 ./usr/include/clustalo/squid/sqfuncs.h -rw-r--r-- root/root 19594 2016-12-21 15:06 ./usr/include/clustalo/squid/squid.h -rw-r--r-- root/root 489 2016-12-21 15:06 ./usr/include/clustalo/squid/sre_random.h -rw-r--r-- root/root 7610 2016-12-21 15:06 ./usr/include/clustalo/squid/ssi.h -rw-r--r-- root/root 1868 2016-12-21 15:06 ./usr/include/clustalo/squid/stockholm.h -rw-r--r-- root/root 1937 2016-12-21 15:06 ./usr/include/clustalo/squid/stopwatch.h -rw-r--r-- root/root 1434 2016-12-21 15:06 ./usr/include/clustalo/squid/vectorops.h -rw-r--r-- root/root 333 2016-12-21 15:06 ./usr/include/clustalo/squid/version.h drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/lib/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/lib/powerpc-linux-gnu/ -rw-r--r-- root/root 897520 2016-12-21 15:06 ./usr/lib/powerpc-linux-gnu/libclustalo.a drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/lib/powerpc-linux-gnu/pkgconfig/ -rw-r--r-- root/root 248 2016-12-21 15:06 ./usr/lib/powerpc-linux-gnu/pkgconfig/clustalo.pc drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-12-21 15:06 ./usr/share/doc/libclustalo-dev/ lrwxrwxrwx root/root 0 2016-12-21 15:06 ./usr/share/doc/libclustalo-dev/changelog.Debian.gz -> ../clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2016-12-21 15:06 ./usr/share/doc/libclustalo-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: powerpc Build-Space: 27860 Build-Time: 64 Distribution: zesty-proposed Host Architecture: powerpc Install-Time: 105 Job: clustalo_1.2.4-1.dsc Machine Architecture: powerpc Package: clustalo Package-Time: 170 Source-Version: 1.2.4-1 Space: 27860 Status: successful Version: 1.2.4-1 -------------------------------------------------------------------------------- Finished at 20161222-0024 Build needed 00:02:50, 27860k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11768050'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11768050/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11768050'] Unmounting chroot for build PACKAGEBUILD-11768050... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11768050'] Removing build PACKAGEBUILD-11768050