https://launchpad.net/ubuntu/+source/clustalo/1.2.4-2/+build/15144862 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-028 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 08:52:48 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 18 Jul 23:13:01 ntpdate[1856]: adjust time server 10.211.37.1 offset -0.109984 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15144862 /home/buildd/filecache-default/ba8da4cd8f224e5b98b45e770e42ce881cefd998 Creating target for build PACKAGEBUILD-15144862 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15144862 Starting target for build PACKAGEBUILD-15144862 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15144862 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15144862 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15144862 Updating target for build PACKAGEBUILD-15144862 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 Packages [1047 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [524 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe arm64 Packages [8398 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5018 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 Packages [96.7 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [54.7 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 Packages [404 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [192 kB] Fetched 16.2 MB in 6s (2680 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 104 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 70.6 MB of archives. After this operation, 91.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-files arm64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo6 arm64 6.1+20180210-4ubuntu1 [73.9 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 debianutils arm64 4.8.6 [84.7 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 bash arm64 4.4.18-2ubuntu2 [545 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdutils arm64 1:2.32-0.1ubuntu1 [54.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 tar arm64 1.30+dfsg-2 [214 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg arm64 1.19.0.5ubuntu3 [1096 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libext2fs2 arm64 1.44.3-1 [138 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fsprogs arm64 1.44.3-1 [351 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-bin arm64 6.1+20180210-4ubuntu1 [154 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 libperl5.26 arm64 5.26.2-6 [3318 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl arm64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 perl-base arm64 5.26.2-6 [1237 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 sed arm64 4.5-1 [177 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 libuuid1 arm64 2.32-0.1ubuntu1 [18.4 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 libblkid1 arm64 2.32-0.1ubuntu1 [108 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfdisk1 arm64 2.32-0.1ubuntu1 [141 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw6 arm64 6.1+20180210-4ubuntu1 [107 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libpcre3 arm64 2:8.39-10ubuntu2 [207 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libselinux1 arm64 2.8-1build1 [57.7 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmount1 arm64 2.32-0.1ubuntu1 [118 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsmartcols1 arm64 2.32-0.1ubuntu1 [73.0 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 fdisk arm64 2.32-0.1ubuntu1 [95.9 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 util-linux arm64 2.32-0.1ubuntu1 [831 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-passwd arm64 3.5.45 [45.8 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgomp1 arm64 8.1.0-11ubuntu1 [69.6 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libitm1 arm64 8.1.0-11ubuntu1 [24.4 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gcc-8-base arm64 8.1.0-11ubuntu1 [18.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgcc1 arm64 1:8.1.0-11ubuntu1 [34.2 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 liblsan0 arm64 8.1.0-11ubuntu1 [120 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libtsan0 arm64 8.1.0-11ubuntu1 [269 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libcc1-0 arm64 8.1.0-11ubuntu1 [36.4 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libatomic1 arm64 8.1.0-11ubuntu1 [9132 B] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libstdc++6 arm64 8.1.0-11ubuntu1 [372 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblz4-1 arm64 1.8.2-1ubuntu1 [75.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libudev1 arm64 238-5ubuntu2 [47.5 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapt-pkg5.0 arm64 1.7.0~alpha2 [763 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 debconf all 1.5.67 [124 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 adduser all 3.117ubuntu1 [163 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgpg-error0 arm64 1.32-1 [48.6 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcrypt20 arm64 1.8.3-1ubuntu1 [326 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgv arm64 2.2.8-1ubuntu1 [166 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libseccomp2 arm64 2.3.3-3ubuntu1 [34.7 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 apt arm64 1.7.0~alpha2 [1136 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libapparmor1 arm64 2.12-4ubuntu6 [28.4 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcap-ng0 arm64 0.7.9-1 [10.3 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu2 [36.0 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 libargon2-1 arm64 0~20171227-0.1 [18.1 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcryptsetup12 arm64 2:2.0.3-6ubuntu1 [116 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkmod2 arm64 25-1ubuntu1 [33.9 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 mount arm64 2.32-0.1ubuntu1 [95.5 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses6 arm64 6.1+20180210-4ubuntu1 [80.8 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 libprocps7 arm64 2:3.3.15-2ubuntu1 [29.1 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main arm64 procps arm64 2:3.3.15-2ubuntu1 [217 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd arm64 238-5ubuntu2 [2580 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsystemd0 arm64 238-5ubuntu2 [174 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd-sysv arm64 238-5ubuntu2 [13.7 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcom-err2 arm64 1.44.3-1 [8624 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsepol1 arm64 2.8-1 [207 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage-common all 2.8-1build1 [7000 B] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage1 arm64 2.8-1build1 [70.8 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 libss2 arm64 1.44.3-1 [9972 B] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgmp10 arm64 2:6.1.2+dfsg-3 [204 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 libp11-kit0 arm64 0.23.12-2 [138 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtasn1-6 arm64 4.13-3 [32.1 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses5 arm64 6.1+20180210-4ubuntu1 [77.1 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw5 arm64 6.1+20180210-4ubuntu1 [96.3 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo5 arm64 6.1+20180210-4ubuntu1 [70.1 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 libargon2-0 arm64 0~20171227-0.1 [4532 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 readline-common all 7.0-5 [52.2 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main arm64 libreadline7 arm64 7.0-5 [106 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main arm64 libslang2 arm64 2.3.2-1ubuntu1 [372 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsqlite3-0 arm64 3.24.0-1 [434 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main arm64 libssl1.1 arm64 1.1.0g-2ubuntu5 [914 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main arm64 openssl arm64 1.1.0g-2ubuntu5 [505 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 tzdata all 2018e-1 [188 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libpng16-16 arm64 1.6.34-2 [162 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 binutils-common arm64 2.31.1-1ubuntu2 [194 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 binutils arm64 2.31.1-1ubuntu2 [3364 B] Get:83 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-1ubuntu2 [2178 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libbinutils arm64 2.31.1-1ubuntu2 [461 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 cpp-8 arm64 8.1.0-11ubuntu1 [5701 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 cpp arm64 4:8.1.0-2ubuntu0.3 [27.6 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libasan5 arm64 8.1.0-11ubuntu1 [337 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libubsan1 arm64 8.1.0-11ubuntu1 [113 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgcc-8-dev arm64 8.1.0-11ubuntu1 [854 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gcc-8 arm64 8.1.0-11ubuntu1 [6453 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gcc arm64 4:8.1.0-2ubuntu0.3 [5208 B] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libstdc++-8-dev arm64 8.1.0-11ubuntu1 [1509 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 g++-8 arm64 8.1.0-11ubuntu1 [6537 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 g++ arm64 4:8.1.0-2ubuntu0.3 [1568 B] Get:95 http://ftpmaster.internal/ubuntu cosmic/main arm64 make arm64 4.2.1-1.1 [146 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main arm64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main arm64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main arm64 build-essential arm64 12.5ubuntu2 [4736 B] Get:99 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libasan4 arm64 7.3.0-26ubuntu1 [335 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libubsan0 arm64 7.3.0-26ubuntu1 [117 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 g++-7 arm64 7.3.0-26ubuntu1 [6147 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gcc-7 arm64 7.3.0-26ubuntu1 [6000 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libstdc++-7-dev arm64 7.3.0-26ubuntu1 [1463 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libgcc-7-dev arm64 7.3.0-26ubuntu1 [830 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 cpp-7 arm64 7.3.0-26ubuntu1 [5333 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 gcc-7-base arm64 7.3.0-26ubuntu1 [18.9 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main arm64 e2fslibs arm64 1.44.3-1 [2704 B] Get:108 http://ftpmaster.internal/ubuntu cosmic/main arm64 pinentry-curses arm64 1.1.0-1build2 [32.4 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnpth0 arm64 1.6-1 [7440 B] Get:110 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg arm64 2.2.8-1ubuntu1 [403 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgconf arm64 2.2.8-1ubuntu1 [106 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg-agent arm64 2.2.8-1ubuntu1 [190 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcomerr2 arm64 1.44.3-1 [2704 B] Get:114 http://ftpmaster.internal/ubuntu cosmic/main arm64 libusb-0.1-4 arm64 2:0.1.12-32 [15.4 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 linux-libc-dev arm64 4.17.0-5.6 [982 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main arm64 pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.6 MB in 2s (29.2 MB/s) (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_arm64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:arm64. (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libtinfo6:arm64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:arm64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_arm64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_arm64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_arm64.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_arm64.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_arm64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.3-1_arm64.deb ... Unpacking libext2fs2:arm64 (1.44.3-1) over (1.44.1-1) ... Setting up libext2fs2:arm64 (1.44.3-1) ... (Reading database ... 12599 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.3-1_arm64.deb ... Unpacking e2fsprogs (1.44.3-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.3-1) ... (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking ncurses-bin (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-4ubuntu1) ... (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-6_arm64.deb ... Unpacking perl (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-6_all.deb ... Unpacking perl-modules-5.26 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-6_arm64.deb ... Unpacking libperl5.26:arm64 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.2-6_arm64.deb ... Unpacking perl-base (5.26.2-6) over (5.26.1-6) ... Setting up perl-base (5.26.2-6) ... (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../archives/sed_4.5-1_arm64.deb ... Unpacking sed (4.5-1) over (4.4-2) ... Setting up sed (4.5-1) ... (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../libuuid1_2.32-0.1ubuntu1_arm64.deb ... Unpacking libuuid1:arm64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:arm64 (2.32-0.1ubuntu1) ... (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../libblkid1_2.32-0.1ubuntu1_arm64.deb ... Unpacking libblkid1:arm64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:arm64 (2.32-0.1ubuntu1) ... (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.32-0.1ubuntu1_arm64.deb ... Unpacking libfdisk1:arm64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:arm64 (2.32-0.1ubuntu1) ... Selecting previously unselected package libncursesw6:arm64. (Reading database ... 12601 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libncursesw6:arm64 (6.1+20180210-4ubuntu1) ... Setting up libncursesw6:arm64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-10ubuntu2_arm64.deb ... Unpacking libpcre3:arm64 (2:8.39-10ubuntu2) over (2:8.39-9) ... Setting up libpcre3:arm64 (2:8.39-10ubuntu2) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../libselinux1_2.8-1build1_arm64.deb ... Unpacking libselinux1:arm64 (2.8-1build1) over (2.7-2build2) ... Setting up libselinux1:arm64 (2.8-1build1) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../libmount1_2.32-0.1ubuntu1_arm64.deb ... Unpacking libmount1:arm64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:arm64 (2.32-0.1ubuntu1) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.32-0.1ubuntu1_arm64.deb ... Unpacking libsmartcols1:arm64 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:arm64 (2.32-0.1ubuntu1) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../fdisk_2.32-0.1ubuntu1_arm64.deb ... Unpacking fdisk (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.32-0.1ubuntu1) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../util-linux_2.32-0.1ubuntu1_arm64.deb ... Unpacking util-linux (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.32-0.1ubuntu1) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.45_arm64.deb ... Unpacking base-passwd (3.5.45) over (3.5.44) ... Setting up base-passwd (3.5.45) ... (Reading database ... 12610 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20180210-4ubuntu1_all.deb ... Unpacking ncurses-base (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-base (6.1+20180210-4ubuntu1) ... (Reading database ... 12612 files and directories currently installed.) Preparing to unpack .../libgomp1_8.1.0-11ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libitm1_8.1.0-11ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../gcc-8-base_8.1.0-11ubuntu1_arm64.deb ... Unpacking gcc-8-base:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:arm64 (8.1.0-11ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.1.0-11ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:8.1.0-11ubuntu1) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:arm64 (1:8.1.0-11ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../liblsan0_8.1.0-11ubuntu1_arm64.deb ... Unpacking liblsan0:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libtsan0_8.1.0-11ubuntu1_arm64.deb ... Unpacking libtsan0:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libcc1-0_8.1.0-11ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libatomic1_8.1.0-11ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libstdc++6_8.1.0-11ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (8.1.0-11ubuntu1) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:arm64 (8.1.0-11ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.8.2-1ubuntu1_arm64.deb ... Unpacking liblz4-1:arm64 (1.8.2-1ubuntu1) over (0.0~r131-2ubuntu3) ... Setting up liblz4-1:arm64 (1.8.2-1ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libudev1_238-5ubuntu2_arm64.deb ... Unpacking libudev1:arm64 (238-5ubuntu2) over (237-3ubuntu10) ... Setting up libudev1:arm64 (238-5ubuntu2) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.7.0~alpha2_arm64.deb ... Unpacking libapt-pkg5.0:arm64 (1.7.0~alpha2) over (1.6.1) ... Setting up libapt-pkg5.0:arm64 (1.7.0~alpha2) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../debconf_1.5.67_all.deb ... Unpacking debconf (1.5.67) over (1.5.66) ... Setting up debconf (1.5.67) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../adduser_3.117ubuntu1_all.deb ... Unpacking adduser (3.117ubuntu1) over (3.116ubuntu1) ... Setting up adduser (3.117ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.32-1_arm64.deb ... Unpacking libgpg-error0:arm64 (1.32-1) over (1.27-6) ... Setting up libgpg-error0:arm64 (1.32-1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.3-1ubuntu1_arm64.deb ... Unpacking libgcrypt20:arm64 (1.8.3-1ubuntu1) over (1.8.1-4ubuntu1) ... Setting up libgcrypt20:arm64 (1.8.3-1ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.8-1ubuntu1_arm64.deb ... Unpacking gpgv (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Setting up gpgv (2.2.8-1ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.3-3ubuntu1_arm64.deb ... Unpacking libseccomp2:arm64 (2.3.3-3ubuntu1) over (2.3.1-2.1ubuntu4) ... Setting up libseccomp2:arm64 (2.3.3-3ubuntu1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../apt_1.7.0~alpha2_arm64.deb ... Unpacking apt (1.7.0~alpha2) over (1.6.1) ... Setting up apt (1.7.0~alpha2) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libapparmor1_2.12-4ubuntu6_arm64.deb ... Unpacking libapparmor1:arm64 (2.12-4ubuntu6) over (2.12-4ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a2.8.3-1ubuntu2_all.deb ... Unpacking libaudit-common (1:2.8.3-1ubuntu2) over (1:2.8.2-1ubuntu1) ... Setting up libaudit-common (1:2.8.3-1ubuntu2) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-1_arm64.deb ... Unpacking libcap-ng0:arm64 (0.7.9-1) over (0.7.7-3.1) ... Setting up libcap-ng0:arm64 (0.7.9-1) ... (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.3-1ubuntu2_arm64.deb ... Unpacking libaudit1:arm64 (1:2.8.3-1ubuntu2) over (1:2.8.2-1ubuntu1) ... Setting up libaudit1:arm64 (1:2.8.3-1ubuntu2) ... Selecting previously unselected package libargon2-1:arm64. (Reading database ... 12611 files and directories currently installed.) Preparing to unpack .../0-libargon2-1_0~20171227-0.1_arm64.deb ... Unpacking libargon2-1:arm64 (0~20171227-0.1) ... Preparing to unpack .../1-libcryptsetup12_2%3a2.0.3-6ubuntu1_arm64.deb ... Unpacking libcryptsetup12:arm64 (2:2.0.3-6ubuntu1) over (2:2.0.2-1ubuntu1) ... Preparing to unpack .../2-libkmod2_25-1ubuntu1_arm64.deb ... Unpacking libkmod2:arm64 (25-1ubuntu1) over (24-1ubuntu3) ... Preparing to unpack .../3-mount_2.32-0.1ubuntu1_arm64.deb ... Unpacking mount (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../4-libncurses6_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libncurses6:arm64 (6.1+20180210-4ubuntu1) ... Selecting previously unselected package libprocps7:arm64. Preparing to unpack .../5-libprocps7_2%3a3.3.15-2ubuntu1_arm64.deb ... Unpacking libprocps7:arm64 (2:3.3.15-2ubuntu1) ... Preparing to unpack .../6-procps_2%3a3.3.15-2ubuntu1_arm64.deb ... Unpacking procps (2:3.3.15-2ubuntu1) over (2:3.3.12-3ubuntu1) ... Setting up libargon2-1:arm64 (0~20171227-0.1) ... Setting up libcryptsetup12:arm64 (2:2.0.3-6ubuntu1) ... (Reading database ... 12633 files and directories currently installed.) Preparing to unpack .../systemd_238-5ubuntu2_arm64.deb ... Unpacking systemd (238-5ubuntu2) over (237-3ubuntu10) ... Preparing to unpack .../libsystemd0_238-5ubuntu2_arm64.deb ... Unpacking libsystemd0:arm64 (238-5ubuntu2) over (237-3ubuntu10) ... Setting up libsystemd0:arm64 (238-5ubuntu2) ... Setting up libapparmor1:arm64 (2.12-4ubuntu6) ... Setting up libkmod2:arm64 (25-1ubuntu1) ... Setting up mount (2.32-0.1ubuntu1) ... Setting up libncurses6:arm64 (6.1+20180210-4ubuntu1) ... Setting up libprocps7:arm64 (2:3.3.15-2ubuntu1) ... Setting up procps (2:3.3.15-2ubuntu1) ... Installing new version of config file /etc/init.d/procps ... Installing new version of config file /etc/sysctl.conf ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up systemd (238-5ubuntu2) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../systemd-sysv_238-5ubuntu2_arm64.deb ... Unpacking systemd-sysv (238-5ubuntu2) over (237-3ubuntu10) ... Preparing to unpack .../libcom-err2_1.44.3-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.44.3-1) over (1.44.1-1) ... Setting up libcom-err2:arm64 (1.44.3-1) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libsepol1_2.8-1_arm64.deb ... Unpacking libsepol1:arm64 (2.8-1) over (2.7-1) ... Setting up libsepol1:arm64 (2.8-1) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.8-1build1_all.deb ... Unpacking libsemanage-common (2.8-1build1) over (2.7-2build2) ... Setting up libsemanage-common (2.8-1build1) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-1build1_arm64.deb ... Unpacking libsemanage1:arm64 (2.8-1build1) over (2.7-2build2) ... Setting up libsemanage1:arm64 (2.8-1build1) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libss2_1.44.3-1_arm64.deb ... Unpacking libss2:arm64 (1.44.3-1) over (1.44.1-1) ... Setting up libss2:arm64 (1.44.3-1) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-3_arm64.deb ... Unpacking libgmp10:arm64 (2:6.1.2+dfsg-3) over (2:6.1.2+dfsg-2) ... Setting up libgmp10:arm64 (2:6.1.2+dfsg-3) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.12-2_arm64.deb ... Unpacking libp11-kit0:arm64 (0.23.12-2) over (0.23.9-2) ... Setting up libp11-kit0:arm64 (0.23.12-2) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_arm64.deb ... Unpacking libtasn1-6:arm64 (4.13-3) over (4.13-2) ... Setting up libtasn1-6:arm64 (4.13-3) ... (Reading database ... 12638 files and directories currently installed.) Preparing to unpack .../libncurses5_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libncurses5:arm64 (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Preparing to unpack .../libncursesw5_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libncursesw5:arm64 (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-4ubuntu1_arm64.deb ... Unpacking libtinfo5:arm64 (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up libtinfo5:arm64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12636 files and directories currently installed.) Preparing to unpack .../00-libargon2-0_0~20171227-0.1_arm64.deb ... Unpacking libargon2-0 (0~20171227-0.1) over (0~20161029-1.1) ... Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) over (7.0-3) ... Preparing to unpack .../02-libreadline7_7.0-5_arm64.deb ... Unpacking libreadline7:arm64 (7.0-5) over (7.0-3) ... Preparing to unpack .../03-libslang2_2.3.2-1ubuntu1_arm64.deb ... Unpacking libslang2:arm64 (2.3.2-1ubuntu1) over (2.3.1a-3ubuntu1) ... Preparing to unpack .../04-libsqlite3-0_3.24.0-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.24.0-1) over (3.22.0-1) ... Preparing to unpack .../05-libssl1.1_1.1.0g-2ubuntu5_arm64.deb ... Unpacking libssl1.1:arm64 (1.1.0g-2ubuntu5) over (1.1.0g-2ubuntu4) ... Preparing to unpack .../06-openssl_1.1.0g-2ubuntu5_arm64.deb ... Unpacking openssl (1.1.0g-2ubuntu5) over (1.1.0g-2ubuntu4) ... Preparing to unpack .../07-tzdata_2018e-1_all.deb ... Unpacking tzdata (2018e-1) over (2018d-1) ... Preparing to unpack .../08-libpng16-16_1.6.34-2_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.34-2) over (1.6.34-1) ... Preparing to unpack .../09-binutils-common_2.31.1-1ubuntu2_arm64.deb ... Unpacking binutils-common:arm64 (2.31.1-1ubuntu2) over (2.30-15ubuntu1) ... Preparing to unpack .../10-binutils_2.31.1-1ubuntu2_arm64.deb ... Unpacking binutils (2.31.1-1ubuntu2) over (2.30-15ubuntu1) ... Preparing to unpack .../11-binutils-aarch64-linux-gnu_2.31.1-1ubuntu2_arm64.deb ... Unpacking binutils-aarch64-linux-gnu (2.31.1-1ubuntu2) over (2.30-15ubuntu1) ... Preparing to unpack .../12-libbinutils_2.31.1-1ubuntu2_arm64.deb ... Unpacking libbinutils:arm64 (2.31.1-1ubuntu2) over (2.30-15ubuntu1) ... Selecting previously unselected package cpp-8. Preparing to unpack .../13-cpp-8_8.1.0-11ubuntu1_arm64.deb ... Unpacking cpp-8 (8.1.0-11ubuntu1) ... Preparing to unpack .../14-cpp_4%3a8.1.0-2ubuntu0.3_arm64.deb ... Unpacking cpp (4:8.1.0-2ubuntu0.3) over (4:7.3.0-3ubuntu2) ... Selecting previously unselected package libasan5:arm64. Preparing to unpack .../15-libasan5_8.1.0-11ubuntu1_arm64.deb ... Unpacking libasan5:arm64 (8.1.0-11ubuntu1) ... Selecting previously unselected package libubsan1:arm64. Preparing to unpack .../16-libubsan1_8.1.0-11ubuntu1_arm64.deb ... Unpacking libubsan1:arm64 (8.1.0-11ubuntu1) ... Selecting previously unselected package libgcc-8-dev:arm64. Preparing to unpack .../17-libgcc-8-dev_8.1.0-11ubuntu1_arm64.deb ... Unpacking libgcc-8-dev:arm64 (8.1.0-11ubuntu1) ... Selecting previously unselected package gcc-8. Preparing to unpack .../18-gcc-8_8.1.0-11ubuntu1_arm64.deb ... Unpacking gcc-8 (8.1.0-11ubuntu1) ... Preparing to unpack .../19-gcc_4%3a8.1.0-2ubuntu0.3_arm64.deb ... Unpacking gcc (4:8.1.0-2ubuntu0.3) over (4:7.3.0-3ubuntu2) ... Selecting previously unselected package libstdc++-8-dev:arm64. Preparing to unpack .../20-libstdc++-8-dev_8.1.0-11ubuntu1_arm64.deb ... Unpacking libstdc++-8-dev:arm64 (8.1.0-11ubuntu1) ... Selecting previously unselected package g++-8. Preparing to unpack .../21-g++-8_8.1.0-11ubuntu1_arm64.deb ... Unpacking g++-8 (8.1.0-11ubuntu1) ... Preparing to unpack .../22-g++_4%3a8.1.0-2ubuntu0.3_arm64.deb ... Unpacking g++ (4:8.1.0-2ubuntu0.3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../23-make_4.2.1-1.1_arm64.deb ... Unpacking make (4.2.1-1.1) over (4.1-9.1ubuntu1) ... Preparing to unpack .../24-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../25-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../26-build-essential_12.5ubuntu2_arm64.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../27-libasan4_7.3.0-26ubuntu1_arm64.deb ... Unpacking libasan4:arm64 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../28-libubsan0_7.3.0-26ubuntu1_arm64.deb ... Unpacking libubsan0:arm64 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../29-g++-7_7.3.0-26ubuntu1_arm64.deb ... Unpacking g++-7 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../30-gcc-7_7.3.0-26ubuntu1_arm64.deb ... Unpacking gcc-7 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../31-libstdc++-7-dev_7.3.0-26ubuntu1_arm64.deb ... Unpacking libstdc++-7-dev:arm64 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../32-libgcc-7-dev_7.3.0-26ubuntu1_arm64.deb ... Unpacking libgcc-7-dev:arm64 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../33-cpp-7_7.3.0-26ubuntu1_arm64.deb ... Unpacking cpp-7 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../34-gcc-7-base_7.3.0-26ubuntu1_arm64.deb ... Unpacking gcc-7-base:arm64 (7.3.0-26ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../35-e2fslibs_1.44.3-1_arm64.deb ... Unpacking e2fslibs:arm64 (1.44.3-1) over (1.44.1-1) ... Preparing to unpack .../36-pinentry-curses_1.1.0-1build2_arm64.deb ... Unpacking pinentry-curses (1.1.0-1build2) over (1.1.0-1) ... Preparing to unpack .../37-libnpth0_1.6-1_arm64.deb ... Unpacking libnpth0:arm64 (1.6-1) over (1.5-3) ... Preparing to unpack .../38-gpg_2.2.8-1ubuntu1_arm64.deb ... Unpacking gpg (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../39-gpgconf_2.2.8-1ubuntu1_arm64.deb ... Unpacking gpgconf (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../40-gpg-agent_2.2.8-1ubuntu1_arm64.deb ... Unpacking gpg-agent (2.2.8-1ubuntu1) over (2.2.4-1ubuntu1) ... Preparing to unpack .../41-libcomerr2_1.44.3-1_arm64.deb ... Unpacking libcomerr2:arm64 (1.44.3-1) over (1.44.1-1) ... Preparing to unpack .../42-libusb-0.1-4_2%3a0.1.12-32_arm64.deb ... Unpacking libusb-0.1-4:arm64 (2:0.1.12-32) over (2:0.1.12-31) ... Preparing to unpack .../43-linux-libc-dev_4.17.0-5.6_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.17.0-5.6) over (4.15.0-20.21) ... Preparing to unpack .../44-pkgbinarymangler_141_all.deb ... Unpacking pkgbinarymangler (141) over (138) ... Setting up libnpth0:arm64 (1.6-1) ... Setting up cpp-8 (8.1.0-11ubuntu1) ... Setting up libncurses5:arm64 (6.1+20180210-4ubuntu1) ... Setting up libgomp1:arm64 (8.1.0-11ubuntu1) ... Setting up libatomic1:arm64 (8.1.0-11ubuntu1) ... Setting up cpp (4:8.1.0-2ubuntu0.3) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:arm64 (8.1.0-11ubuntu1) ... Setting up make (4.2.1-1.1) ... Setting up pkgbinarymangler (141) ... Setting up e2fslibs:arm64 (1.44.3-1) ... Setting up libpng16-16:arm64 (1.6.34-2) ... Setting up libncursesw5:arm64 (6.1+20180210-4ubuntu1) ... Setting up libreadline7:arm64 (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 18 23:13:54 UTC 2018. Universal Time is now: Wed Jul 18 23:13:54 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (238-5ubuntu2) ... Setting up libtsan0:arm64 (8.1.0-11ubuntu1) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:arm64 (4.17.0-5.6) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up liblsan0:arm64 (8.1.0-11ubuntu1) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:arm64 (7.3.0-26ubuntu1) ... Setting up binutils-common:arm64 (2.31.1-1ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:arm64 (5.26.2-6) ... Setting up libssl1.1:arm64 (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:arm64 (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libcomerr2:arm64 (1.44.3-1) ... Setting up libslang2:arm64 (2.3.2-1ubuntu1) ... Setting up libasan5:arm64 (8.1.0-11ubuntu1) ... Setting up libusb-0.1-4:arm64 (2:0.1.12-32) ... Setting up libitm1:arm64 (8.1.0-11ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libubsan1:arm64 (8.1.0-11ubuntu1) ... Setting up libasan4:arm64 (7.3.0-26ubuntu1) ... Setting up libbinutils:arm64 (2.31.1-1ubuntu2) ... Setting up libubsan0:arm64 (7.3.0-26ubuntu1) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:arm64 (7.3.0-26ubuntu1) ... Setting up cpp-7 (7.3.0-26ubuntu1) ... Setting up libstdc++-7-dev:arm64 (7.3.0-26ubuntu1) ... Setting up perl (5.26.2-6) ... Setting up binutils-aarch64-linux-gnu (2.31.1-1ubuntu2) ... Setting up libgcc-8-dev:arm64 (8.1.0-11ubuntu1) ... Setting up binutils (2.31.1-1ubuntu2) ... Setting up libstdc++-8-dev:arm64 (8.1.0-11ubuntu1) ... Setting up gcc-7 (7.3.0-26ubuntu1) ... Setting up g++-7 (7.3.0-26ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc-8 (8.1.0-11ubuntu1) ... Setting up g++-8 (8.1.0-11ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up gcc (4:8.1.0-2ubuntu0.3) ... Setting up g++ (4:8.1.0-2ubuntu0.3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15144862 arm64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15144862 --arch=arm64 --dist=cosmic-proposed --nolog clustalo_1.2.4-2.dsc Initiating build PACKAGEBUILD-15144862 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 08:52:48 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-028.buildd +==============================================================================+ | clustalo 1.2.4-2 (arm64) 18 Jul 2018 23:13 | +==============================================================================+ Package: clustalo Version: 1.2.4-2 Source Version: 1.2.4-2 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/clustalo-JwCScs/clustalo-1.2.4' with '<>' I: NOTICE: Log filtering will replace 'build/clustalo-JwCScs' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15144862/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalo_1.2.4-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-2yk98p/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-2yk98p/apt_archive ./ InRelease Get:2 copy:/<>/resolver-2yk98p/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-2yk98p/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-2yk98p/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-2yk98p/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-2yk98p/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13593 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common Filtered Build-Depends: debhelper (>= 11~), dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common dpkg-deb: building package 'sbuild-build-depends-clustalo-dummy' in '/<>/resolver-YFSDui/apt_archive/sbuild-build-depends-clustalo-dummy.deb'. Ign:1 copy:/<>/resolver-YFSDui/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YFSDui/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YFSDui/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YFSDui/apt_archive ./ Sources [256 B] Get:5 copy:/<>/resolver-YFSDui/apt_archive ./ Packages [578 B] Fetched 2953 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clustalo build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3 libdatrie1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblab-gamut1 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sphinx-common ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx fonts-liberation libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common libltdl-dev libmail-sendmail-perl python-sphinx | python3-sphinx The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3 libdatrie1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblab-gamut1 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sbuild-build-depends-clustalo-dummy sphinx-common ucf x11-common 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 48.8 MB of archives. After this operation, 192 MB of additional disk space will be used. Get:1 copy:/<>/resolver-YFSDui/apt_archive ./ sbuild-build-depends-clustalo-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxau6 arm64 1:1.0.8-1 [7590 B] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxdmcp6 arm64 1:1.1.2-3 [9694 B] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libxcb1 arm64 1.13-2 [43.7 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libx11-data all 2:1.6.5-1 [113 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libx11-6 arm64 2:1.6.5-1 [521 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxext6 arm64 2:1.3.3-1 [25.4 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpipeline1 arm64 1.5.0-1 [22.0 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 man-db arm64 2.8.3-2 [993 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main arm64 libexpat1 arm64 2.2.5-3 [69.2 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfreetype6 arm64 2.8.1-2ubuntu2 [290 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 ucf all 3.0038 [50.5 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfontconfig1 arm64 2.12.6-0ubuntu2 [125 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 fontconfig arm64 2.12.6-0ubuntu2 [167 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main arm64 libjpeg-turbo8 arm64 1.5.2-0ubuntu6 [91.4 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main arm64 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 libice6 arm64 2:1.0.9-2 [33.7 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsm6 arm64 2:1.2.2-1 [13.7 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic-mgc arm64 1:5.33-3 [192 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic1 arm64 1:5.33-3 [62.8 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 file arm64 1:5.33-3 [22.6 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main arm64 libelf1 arm64 0.170-0.5 [40.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libfribidi0 arm64 1.0.4-1 [24.8 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main arm64 libglib2.0-0 arm64 2.56.1-2ubuntu1 [981 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 libicu60 arm64 60.2-6ubuntu1 [7987 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libxml2 arm64 2.9.4+dfsg1-7build1 [548 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext-base arm64 0.19.8.1-6build1 [46.5 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 libedit2 arm64 3.1-20180525-1 [67.0 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main arm64 autoconf all 2.69-11 [322 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main arm64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 autopoint all 0.19.8.1-6build1 [412 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtool all 2.4.6-2.1build1 [196 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-autoreconf all 19 [16.1 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext arm64 0.19.8.1-6build1 [823 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 po-debconf all 1.0.20 [232 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/universe arm64 dh-linktree all 0.6 [10.7 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 libllvm6.0 arm64 1:6.0.1-2ubuntu1 [12.7 MB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 libclang1-6.0 arm64 1:6.0.1-2ubuntu1 [5980 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxapian30 arm64 1.4.6-2 [597 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 doxygen arm64 1.8.13-10 [3582 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libcdt5 arm64 2.40.1-3 [17.7 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libcgraph6 arm64 2.40.1-3 [34.4 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main arm64 libjbig0 arm64 2.1-3.1build1 [24.0 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtiff5 arm64 4.0.9-6 [129 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 libwebp6 arm64 0.6.1-2 [155 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxpm4 arm64 1:3.5.12-1 [28.8 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgd3 arm64 2.2.5-4 [99.3 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libgts-0.7-5 arm64 0.7.6+darcs121130-4 [117 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpixman-1-0 arm64 0.34.0-2 [115 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libxcb-render0 arm64 1.13-2 [14.5 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libxcb-shm0 arm64 1.13-2 [5652 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxrender1 arm64 1:0.9.10-1 [16.1 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcairo2 arm64 1.15.10-3 [492 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main arm64 libltdl7 arm64 2.4.6-2.1build1 [38.1 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 libthai-data all 0.1.27-2 [133 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 libdatrie1 arm64 0.2.12-1 [15.9 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main arm64 libthai0 arm64 0.1.27-2 [15.4 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpango-1.0-0 arm64 1.42.1-2 [135 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgraphite2-3 arm64 1.3.11-2 [67.0 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main arm64 libharfbuzz0b arm64 1.8.3-1 [227 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpangoft2-1.0-0 arm64 1.42.1-2 [28.1 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpangocairo-1.0-0 arm64 1.42.1-2 [18.8 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libpathplan4 arm64 2.40.1-3 [19.6 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libgvc6 arm64 2.40.1-3 [505 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libgvpr2 arm64 2.40.1-3 [151 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 liblab-gamut1 arm64 2.40.1-3 [178 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxt6 arm64 1:1.1.5-1 [128 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxmu6 arm64 2:1.1.2-2 [38.8 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxaw7 arm64 2:1.0.13-1 [137 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 graphviz arm64 2.40.1-3 [487 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libargtable2-0 arm64 13-1 [12.1 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libargtable2-docs all 13-1 [2618 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libargtable2-dev arm64 13-1 [50.9 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main arm64 libjs-jquery all 3.2.1-1 [152 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main arm64 libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libjs-sphinxdoc all 1.7.6-1 [91.7 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 sphinx-common all 1.7.6-1 [437 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.8 MB in 1s (34.3 MB/s) Selecting previously unselected package libxau6:arm64. (Reading database ... 13593 files and directories currently installed.) Preparing to unpack .../00-libxau6_1%3a1.0.8-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../01-libbsd0_0.9.1-1_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../02-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../03-libxcb1_1.13-2_arm64.deb ... Unpacking libxcb1:arm64 (1.13-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../04-libx11-data_2%3a1.6.5-1_all.deb ... Unpacking libx11-data (2:1.6.5-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../05-libx11-6_2%3a1.6.5-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.6.5-1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../06-libxext6_2%3a1.3.3-1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../07-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.3-10_arm64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.8.3-2_arm64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../11-libexpat1_2.2.5-3_arm64.deb ... Unpacking libexpat1:arm64 (2.2.5-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../12-libfreetype6_2.8.1-2ubuntu2_arm64.deb ... Unpacking libfreetype6:arm64 (2.8.1-2ubuntu2) ... Selecting previously unselected package ucf. Preparing to unpack .../13-ucf_3.0038_all.deb ... Moving old data out of the way Unpacking ucf (3.0038) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../14-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../15-fontconfig-config_2.12.6-0ubuntu2_all.deb ... Unpacking fontconfig-config (2.12.6-0ubuntu2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../16-libfontconfig1_2.12.6-0ubuntu2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.12.6-0ubuntu2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../17-fontconfig_2.12.6-0ubuntu2_arm64.deb ... Unpacking fontconfig (2.12.6-0ubuntu2) ... Selecting previously unselected package libjpeg-turbo8:arm64. Preparing to unpack .../18-libjpeg-turbo8_1.5.2-0ubuntu6_arm64.deb ... Unpacking libjpeg-turbo8:arm64 (1.5.2-0ubuntu6) ... Selecting previously unselected package x11-common. Preparing to unpack .../19-x11-common_1%3a7.7+19ubuntu8_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu8) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../20-libice6_2%3a1.0.9-2_arm64.deb ... Unpacking libice6:arm64 (2:1.0.9-2) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../21-libsm6_2%3a1.2.2-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.2-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../22-libmagic-mgc_1%3a5.33-3_arm64.deb ... Unpacking libmagic-mgc (1:5.33-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../23-libmagic1_1%3a5.33-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.33-3) ... Selecting previously unselected package file. Preparing to unpack .../24-file_1%3a5.33-3_arm64.deb ... Unpacking file (1:5.33-3) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../25-libelf1_0.170-0.5_arm64.deb ... Unpacking libelf1:arm64 (0.170-0.5) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../26-libfribidi0_1.0.4-1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.4-1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../27-libglib2.0-0_2.56.1-2ubuntu1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:arm64. Preparing to unpack .../28-libicu60_60.2-6ubuntu1_arm64.deb ... Unpacking libicu60:arm64 (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../29-libxml2_2.9.4+dfsg1-7build1_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../30-gettext-base_0.19.8.1-6build1_arm64.deb ... Unpacking gettext-base (0.19.8.1-6build1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../31-libedit2_3.1-20180525-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20180525-1) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../32-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../33-m4_1.4.18-1_arm64.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../34-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../35-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../36-automake_1%3a1.15.1-3ubuntu2_all.deb ... Unpacking automake (1:1.15.1-3ubuntu2) ... Selecting previously unselected package autopoint. Preparing to unpack .../37-autopoint_0.19.8.1-6build1_all.deb ... Unpacking autopoint (0.19.8.1-6build1) ... Selecting previously unselected package libtool. Preparing to unpack .../38-libtool_2.4.6-2.1build1_all.deb ... Unpacking libtool (2.4.6-2.1build1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../39-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../40-libarchive-zip-perl_1.60-1ubuntu1_all.deb ... Unpacking libarchive-zip-perl (1.60-1ubuntu1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../41-libfile-stripnondeterminism-perl_0.042-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.042-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../42-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../43-dh-strip-nondeterminism_0.042-1_all.deb ... Unpacking dh-strip-nondeterminism (0.042-1) ... Selecting previously unselected package dwz. Preparing to unpack .../44-dwz_0.12-2_arm64.deb ... Unpacking dwz (0.12-2) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../45-libcroco3_0.6.12-2_arm64.deb ... Unpacking libcroco3:arm64 (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.19.8.1-6build1_arm64.deb ... Unpacking gettext (0.19.8.1-6build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_11.3.2ubuntu1_all.deb ... Unpacking debhelper (11.3.2ubuntu1) ... Selecting previously unselected package dh-linktree. Preparing to unpack .../50-dh-linktree_0.6_all.deb ... Unpacking dh-linktree (0.6) ... Selecting previously unselected package libllvm6.0:arm64. Preparing to unpack .../51-libllvm6.0_1%3a6.0.1-2ubuntu1_arm64.deb ... Unpacking libllvm6.0:arm64 (1:6.0.1-2ubuntu1) ... Selecting previously unselected package libclang1-6.0:arm64. Preparing to unpack .../52-libclang1-6.0_1%3a6.0.1-2ubuntu1_arm64.deb ... Unpacking libclang1-6.0:arm64 (1:6.0.1-2ubuntu1) ... Selecting previously unselected package libxapian30:arm64. Preparing to unpack .../53-libxapian30_1.4.6-2_arm64.deb ... Unpacking libxapian30:arm64 (1.4.6-2) ... Selecting previously unselected package doxygen. Preparing to unpack .../54-doxygen_1.8.13-10_arm64.deb ... Unpacking doxygen (1.8.13-10) ... Selecting previously unselected package libcdt5. Preparing to unpack .../55-libcdt5_2.40.1-3_arm64.deb ... Unpacking libcdt5 (2.40.1-3) ... Selecting previously unselected package libcgraph6. Preparing to unpack .../56-libcgraph6_2.40.1-3_arm64.deb ... Unpacking libcgraph6 (2.40.1-3) ... Selecting previously unselected package libjpeg8:arm64. Preparing to unpack .../57-libjpeg8_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg8:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../58-libjbig0_2.1-3.1build1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1build1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../59-libtiff5_4.0.9-6_arm64.deb ... Unpacking libtiff5:arm64 (4.0.9-6) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../60-libwebp6_0.6.1-2_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2) ... Selecting previously unselected package libxpm4:arm64. Preparing to unpack .../61-libxpm4_1%3a3.5.12-1_arm64.deb ... Unpacking libxpm4:arm64 (1:3.5.12-1) ... Selecting previously unselected package libgd3:arm64. Preparing to unpack .../62-libgd3_2.2.5-4_arm64.deb ... Unpacking libgd3:arm64 (2.2.5-4) ... Selecting previously unselected package libgts-0.7-5:arm64. Preparing to unpack .../63-libgts-0.7-5_0.7.6+darcs121130-4_arm64.deb ... Unpacking libgts-0.7-5:arm64 (0.7.6+darcs121130-4) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../64-libpixman-1-0_0.34.0-2_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.34.0-2) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../65-libxcb-render0_1.13-2_arm64.deb ... Unpacking libxcb-render0:arm64 (1.13-2) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../66-libxcb-shm0_1.13-2_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.13-2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../67-libxrender1_1%3a0.9.10-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../68-libcairo2_1.15.10-3_arm64.deb ... Unpacking libcairo2:arm64 (1.15.10-3) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../69-libltdl7_2.4.6-2.1build1_arm64.deb ... Unpacking libltdl7:arm64 (2.4.6-2.1build1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../70-libthai-data_0.1.27-2_all.deb ... Unpacking libthai-data (0.1.27-2) ... Selecting previously unselected package libdatrie1:arm64. Preparing to unpack .../71-libdatrie1_0.2.12-1_arm64.deb ... Unpacking libdatrie1:arm64 (0.2.12-1) ... Selecting previously unselected package libthai0:arm64. Preparing to unpack .../72-libthai0_0.1.27-2_arm64.deb ... Unpacking libthai0:arm64 (0.1.27-2) ... Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../73-libpango-1.0-0_1.42.1-2_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.42.1-2) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../74-libgraphite2-3_1.3.11-2_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.11-2) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../75-libharfbuzz0b_1.8.3-1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (1.8.3-1) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../76-libpangoft2-1.0-0_1.42.1-2_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.42.1-2) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../77-libpangocairo-1.0-0_1.42.1-2_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.42.1-2) ... Selecting previously unselected package libpathplan4. Preparing to unpack .../78-libpathplan4_2.40.1-3_arm64.deb ... Unpacking libpathplan4 (2.40.1-3) ... Selecting previously unselected package libgvc6. Preparing to unpack .../79-libgvc6_2.40.1-3_arm64.deb ... Unpacking libgvc6 (2.40.1-3) ... Selecting previously unselected package libgvpr2. Preparing to unpack .../80-libgvpr2_2.40.1-3_arm64.deb ... Unpacking libgvpr2 (2.40.1-3) ... Selecting previously unselected package liblab-gamut1. Preparing to unpack .../81-liblab-gamut1_2.40.1-3_arm64.deb ... Unpacking liblab-gamut1 (2.40.1-3) ... Selecting previously unselected package libxt6:arm64. Preparing to unpack .../82-libxt6_1%3a1.1.5-1_arm64.deb ... Unpacking libxt6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxmu6:arm64. Preparing to unpack .../83-libxmu6_2%3a1.1.2-2_arm64.deb ... Unpacking libxmu6:arm64 (2:1.1.2-2) ... Selecting previously unselected package libxaw7:arm64. Preparing to unpack .../84-libxaw7_2%3a1.0.13-1_arm64.deb ... Unpacking libxaw7:arm64 (2:1.0.13-1) ... Selecting previously unselected package graphviz. Preparing to unpack .../85-graphviz_2.40.1-3_arm64.deb ... Unpacking graphviz (2.40.1-3) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../86-libargtable2-0_13-1_arm64.deb ... Unpacking libargtable2-0 (13-1) ... Selecting previously unselected package libargtable2-docs. Preparing to unpack .../87-libargtable2-docs_13-1_all.deb ... Unpacking libargtable2-docs (13-1) ... Selecting previously unselected package libargtable2-dev. Preparing to unpack .../88-libargtable2-dev_13-1_arm64.deb ... Unpacking libargtable2-dev (13-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../89-libjs-jquery_3.2.1-1_all.deb ... Unpacking libjs-jquery (3.2.1-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../90-libjs-underscore_1.8.3~dfsg-1_all.deb ... Unpacking libjs-underscore (1.8.3~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../91-libjs-sphinxdoc_1.7.6-1_all.deb ... Unpacking libjs-sphinxdoc (1.7.6-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../92-sphinx-common_1.7.6-1_all.deb ... Unpacking sphinx-common (1.7.6-1) ... Selecting previously unselected package sbuild-build-depends-clustalo-dummy. Preparing to unpack .../93-sbuild-build-depends-clustalo-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-clustalo-dummy (0.invalid.0) ... Setting up libargtable2-docs (13-1) ... Setting up libargtable2-0 (13-1) ... Setting up libedit2:arm64 (3.1-20180525-1) ... Setting up libjs-jquery (3.2.1-1) ... Setting up libxapian30:arm64 (1.4.6-2) ... Setting up libpathplan4 (2.40.1-3) ... Setting up libexpat1:arm64 (2.2.5-3) ... Setting up libicu60:arm64 (60.2-6ubuntu1) ... Setting up liblab-gamut1 (2.40.1-3) ... Setting up libarchive-zip-perl (1.60-1ubuntu1) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up libllvm6.0:arm64 (1:6.0.1-2ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:arm64 (2.1-3.1build1) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libelf1:arm64 (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:arm64 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up libclang1-6.0:arm64 (1:6.0.1-2ubuntu1) ... Setting up libjs-sphinxdoc (1.7.6-1) ... Setting up libdatrie1:arm64 (0.2.12-1) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up libjpeg-turbo8:arm64 (1.5.2-0ubuntu6) ... Setting up libpipeline1:arm64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up ucf (3.0038) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7build1) ... Setting up libfreetype6:arm64 (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:arm64 (1:5.33-3) ... Setting up libgraphite2-3:arm64 (1.3.11-2) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up libpixman-1-0:arm64 (0.34.0-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Processing triggers for systemd (238-5ubuntu2) ... Setting up libltdl7:arm64 (2.4.6-2.1build1) ... Setting up sphinx-common (1.7.6-1) ... Setting up libfribidi0:arm64 (1.0.4-1) ... Setting up libargtable2-dev (13-1) ... Setting up libthai-data (0.1.27-2) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libcdt5 (2.40.1-3) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libcgraph6 (2.40.1-3) ... Setting up libwebp6:arm64 (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libgts-0.7-5:arm64 (0.7.6+darcs121130-4) ... Setting up fontconfig-config (2.12.6-0ubuntu2) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libgvpr2 (2.40.1-3) ... Setting up doxygen (1.8.13-10) ... Setting up libharfbuzz0b:arm64 (1.8.3-1) ... Setting up libtiff5:arm64 (4.0.9-6) ... Setting up autoconf (2.69-11) ... Setting up libthai0:arm64 (0.1.27-2) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:arm64 (2:1.0.9-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:arm64 (1.13-2) ... Setting up libtool (2.4.6-2.1build1) ... Setting up libfontconfig1:arm64 (2.12.6-0ubuntu2) ... Setting up libsm6:arm64 (2:1.2.2-1) ... Setting up libxcb-render0:arm64 (1.13-2) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:arm64 (2:1.6.5-1) ... Setting up libxcb-shm0:arm64 (1.13-2) ... Setting up libxpm4:arm64 (1:3.5.12-1) ... Setting up libxt6:arm64 (1:1.1.5-1) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up fontconfig (2.12.6-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:arm64 (2:1.3.3-1) ... Setting up libgd3:arm64 (2.2.5-4) ... Setting up libxmu6:arm64 (2:1.1.2-2) ... Setting up libpango-1.0-0:arm64 (1.42.1-2) ... Setting up libxaw7:arm64 (2:1.0.13-1) ... Setting up libcairo2:arm64 (1.15.10-3) ... Setting up libpangoft2-1.0-0:arm64 (1.42.1-2) ... Setting up libpangocairo-1.0-0:arm64 (1.42.1-2) ... Setting up libgvc6 (2.40.1-3) ... Setting up graphviz (2.40.1-3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-linktree (0.6) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up sbuild-build-depends-clustalo-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (238-5ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-130-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-1ubuntu2 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-26ubuntu1 g++-8_8.1.0-11ubuntu1 gcc-7_7.3.0-26ubuntu1 gcc-8_8.1.0-11ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-26ubuntu1 libstdc++-8-dev_8.1.0-11ubuntu1 libstdc++6_8.1.0-11ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31.1-1ubuntu2 binutils-aarch64-linux-gnu_2.31.1-1ubuntu2 binutils-common_2.31.1-1ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:8.1.0-2ubuntu0.3 cpp-7_7.3.0-26ubuntu1 cpp-8_8.1.0-11ubuntu1 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-linktree_0.6 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 doxygen_1.8.13-10 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0ubuntu2 fontconfig-config_2.12.6-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:8.1.0-2ubuntu0.3 g++-7_7.3.0-26ubuntu1 g++-8_8.1.0-11ubuntu1 gcc_4:8.1.0-2ubuntu0.3 gcc-7_7.3.0-26ubuntu1 gcc-7-base_7.3.0-26ubuntu1 gcc-8_8.1.0-11ubuntu1 gcc-8-base_8.1.0-11ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 graphviz_2.40.1-3 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libargtable2-0_13-1 libargtable2-dev_13-1 libargtable2-docs_13-1 libasan4_7.3.0-26ubuntu1 libasan5_8.1.0-11ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-11ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31.1-1ubuntu2 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-11ubuntu1 libcdt5_2.40.1-3 libcgraph6_2.40.1-3 libclang1-6.0_1:6.0.1-2ubuntu1 libcom-err2_1.44.3-1 libcomerr2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.3-6ubuntu1 libdatrie1_0.2.12-1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfontconfig1_2.12.6-0ubuntu2 libfreetype6_2.8.1-2ubuntu2 libfribidi0_1.0.4-1 libgcc-7-dev_7.3.0-26ubuntu1 libgcc-8-dev_8.1.0-11ubuntu1 libgcc1_1:8.1.0-11ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgd3_2.2.5-4 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-11ubuntu1 libgpg-error0_1.32-1 libgraphite2-3_1.3.11-2 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.40.1-3 libgvpr2_2.40.1-3 libharfbuzz0b_1.8.3-1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-11ubuntu1 libjbig0_2.1-3.1build1 libjpeg-turbo8_1.5.2-0ubuntu6 libjpeg8_8c-2ubuntu8 libjs-jquery_3.2.1-1 libjs-sphinxdoc_1.7.6-1 libjs-underscore_1.8.3~dfsg-1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblab-gamut1_2.40.1-3 libllvm6.0_1:6.0.1-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-11ubuntu1 libltdl7_2.4.6-2.1build1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpango-1.0-0_1.42.1-2 libpangocairo-1.0-0_1.42.1-2 libpangoft2-1.0-0_1.42.1-2 libpathplan4_2.40.1-3 libpcre3_2:8.39-10ubuntu2 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-26ubuntu1 libstdc++-8-dev_8.1.0-11ubuntu1 libstdc++6_8.1.0-11ubuntu1 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff5_4.0.9-6 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libtsan0_8.1.0-11ubuntu1 libubsan0_7.3.0-26ubuntu1 libubsan1_8.1.0-11ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libwebp6_0.6.1-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxapian30_1.4.6-2 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.13-2 libxcb-shm0_1.13-2 libxcb1_1.13-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxml2_2.9.4+dfsg1-7build1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-5.6 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-clustalo-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 sphinx-common_1.7.6-1 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.32-0.1ubuntu1 x11-common_1:7.7+19ubuntu8 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jul 18 19:15:32 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalo_1.2.4-2.dsc dpkg-source: info: extracting clustalo in clustalo-1.2.4 dpkg-source: info: unpacking clustalo_1.2.4.orig.tar.gz dpkg-source: info: unpacking clustalo_1.2.4-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15144862 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15144862 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15144862 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalo dpkg-buildpackage: info: source version 1.2.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clustalo-1.2.4 dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --with linktree debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f _configs.sed rm -rf doc make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with linktree dh_update_autotools_config -a dh_autoreconf -a configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:133: installing './compile' configure.ac:115: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Welcome to Clustal Omega - version 1.2.4 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 IMMMMS MMMMM, ~MMMMN ,MMMMM =MMMMM MMMMM ?MMMMM +MMMMM MMMMMS MMMMM MMMMM MMMMM: MMMMM MMMMM+ MMMMM MMMMM~ MMMMM MMMMM MMMMMZ MMMMM MMMMM ,MMMMZ MMMM8 MMMM+ MMMMS MMMM, MMMMO MMMM ,N SMMM MMM8 +8 ,M7 M+ M+ :M8 ,MMMMMMMMMMMMI MMMMMMMMMMMM8 ,MMMMMMMMMMMM8 MMMMMMMMMMMM8 ,MMMMMMMMMMMMN MMMMMMMMMMMM8 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking whether make sets $(MAKE)... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for memory.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for inline... inline checking for log in -lm... yes checking for log2 in -lm... yes checking argtable2.h usability... yes checking argtable2.h presence... yes checking for argtable2.h... yes checking for arg_parse in -largtable2... yes checking for OpenMP flag of C compiler... -fopenmp checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for ntons... no checking for ntonl... no checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for stroul... no checking for strtoull... yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for off_t... yes checking size of fpos_t... 16 checking if malloc debugging is wanted... no checking whether to build with debug information... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating clustalo.pc config.status: creating Doxyfile config.status: creating src/clustal/Makefile config.status: creating src/hhalign/Makefile config.status: creating src/kmpp/Makefile config.status: creating src/squid/Makefile config.status: creating src/config.h config.status: executing src/clustal-omega-config.h commands config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-recursive make[3]: Entering directory '/<>/src' Making all in hhalign make[4]: Entering directory '/<>/src/hhalign' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hhalign.lo hhalign.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -fPIC -DPIC -o .libs/hhalign.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -o hhalign.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libhhalign.la hhalign.lo -largtable2 -lm libtool: link: ar cru .libs/libhhalign.a .libs/hhalign.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhhalign.a libtool: link: ( cd ".libs" && rm -f "libhhalign.la" && ln -s "../libhhalign.la" "libhhalign.la" ) make[4]: Leaving directory '/<>/src/hhalign' Making all in squid make[4]: Entering directory '/<>/src/squid' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o a2m.lo a2m.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.lo aligneval.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignio.lo alignio.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal.lo clustal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIC -DPIC -o .libs/aligneval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -o a2m.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.lo cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -o aligneval.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -fPIC -DPIC -o .libs/cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -o clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -o alignio.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o dayhoff.lo dayhoff.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -fPIC -DPIC -o .libs/dayhoff.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -o cluster.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eps.lo eps.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -o dayhoff.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -o eps.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o file.lo file.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o getopt.lo getopt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/file.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gki.lo gki.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsi.lo gsi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi.c -fPIC -DPIC -o .libs/gsi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -o file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -o getopt.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -o gki.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gsi64.lo gsi64.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi.c -o gsi.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hsregex.lo hsregex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi64.c -fPIC -DPIC -o .libs/gsi64.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi64.c -o gsi64.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/hsregex.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iupac.lo iupac.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o msa.lo msa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -fPIC -DPIC -o .libs/iupac.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -fPIC -DPIC -o .libs/msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -o iupac.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o msf.lo msf.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o phylip.lo phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -fPIC -DPIC -o .libs/msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -fPIC -DPIC -o .libs/phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -o phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -o msf.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp.lo revcomp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -o hsregex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -fPIC -DPIC -o .libs/revcomp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -o revcomp.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rk.lo rk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -fPIC -DPIC -o .libs/rk.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o selex.lo selex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -fPIC -DPIC -o .libs/selex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -o msa.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -o rk.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqencode.lo seqencode.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/seqencode.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle.lo shuffle.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/shuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -o seqencode.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sqerror.lo sqerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -o selex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -fPIC -DPIC -o .libs/sqerror.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -o shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -o sqerror.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sqio.lo sqio.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o squidcore.lo squidcore.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -fPIC -DPIC -o .libs/sqio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -fPIC -DPIC -o .libs/squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -o squidcore.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_ctype.lo sre_ctype.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -fPIC -DPIC -o .libs/sre_ctype.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_math.lo sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -o sre_ctype.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -fPIC -DPIC -o .libs/sre_math.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_random.lo sre_random.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_string.lo sre_string.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -fPIC -DPIC -o .libs/sre_random.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -fPIC -DPIC -o .libs/sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -o sre_math.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -o sre_random.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -o sre_string.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ssi.lo ssi.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stack.lo stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -fPIC -DPIC -o .libs/ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stack.c -fPIC -DPIC -o .libs/stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stack.c -o stack.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stockholm.lo stockholm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -fPIC -DPIC -o .libs/stockholm.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stopwatch.lo stopwatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -o sqio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -o stopwatch.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.lo translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -o ssi.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -o stockholm.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o translate.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o types.lo types.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIC -DPIC -o .libs/types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -o types.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vectorops.lo vectorops.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight.lo weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -fPIC -DPIC -o .libs/vectorops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/weight.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -o vectorops.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -o weight.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link gcc -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libsquid.la a2m.lo aligneval.lo alignio.lo clustal.lo cluster.lo dayhoff.lo eps.lo file.lo getopt.lo gki.lo gsi.lo gsi64.lo hsregex.lo iupac.lo msa.lo msf.lo phylip.lo revcomp.lo rk.lo selex.lo seqencode.lo shuffle.lo sqerror.lo sqio.lo squidcore.lo sre_ctype.lo sre_math.lo sre_random.lo sre_string.lo ssi.lo stack.lo stockholm.lo stopwatch.lo translate.lo types.lo vectorops.lo weight.lo -largtable2 -lm libtool: link: ar cru .libs/libsquid.a .libs/a2m.o .libs/aligneval.o .libs/alignio.o .libs/clustal.o .libs/cluster.o .libs/dayhoff.o .libs/eps.o .libs/file.o .libs/getopt.o .libs/gki.o .libs/gsi.o .libs/gsi64.o .libs/hsregex.o .libs/iupac.o .libs/msa.o .libs/msf.o .libs/phylip.o .libs/revcomp.o .libs/rk.o .libs/selex.o .libs/seqencode.o .libs/shuffle.o .libs/sqerror.o .libs/sqio.o .libs/squidcore.o .libs/sre_ctype.o .libs/sre_math.o .libs/sre_random.o .libs/sre_string.o .libs/ssi.o .libs/stack.o .libs/stockholm.o .libs/stopwatch.o .libs/translate.o .libs/types.o .libs/vectorops.o .libs/weight.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) make[4]: Leaving directory '/<>/src/squid' Making all in kmpp make[4]: Entering directory '/<>/src/kmpp' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o KMeans.lo KMeans.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o KmTree.lo KmTree.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o KmUtils.lo KmUtils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KMeans.cpp -fPIC -DPIC -o .libs/KMeans.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmUtils.cpp -fPIC -DPIC -o .libs/KmUtils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmTree.cpp -fPIC -DPIC -o .libs/KmTree.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmUtils.cpp -o KmUtils.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmTree.cpp -o KmTree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KMeans.cpp -o KMeans.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libkmpp.la KMeans.lo KmTree.lo KmUtils.lo -largtable2 -lm libtool: link: ar cru .libs/libkmpp.a .libs/KMeans.o .libs/KmTree.o .libs/KmUtils.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libkmpp.a libtool: link: ( cd ".libs" && rm -f "libkmpp.la" && ln -s "../libkmpp.la" "libkmpp.la" ) make[4]: Leaving directory '/<>/src/kmpp' Making all in clustal make[4]: Entering directory '/<>/src/clustal' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hhalign_wrapper.lo hhalign_wrapper.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ktuple_pair.lo ktuple_pair.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o list.lo list.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o log.lo log.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign_wrapper.c -fPIC -DPIC -o .libs/hhalign_wrapper.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c list.c -fPIC -DPIC -o .libs/list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ktuple_pair.c -fPIC -DPIC -o .libs/ktuple_pair.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c log.c -fPIC -DPIC -o .libs/log.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c list.c -o list.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c log.c -o log.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o muscle_upgma.lo muscle_upgma.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_upgma.c -fPIC -DPIC -o .libs/muscle_upgma.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o muscle_tree.lo muscle_tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_tree.c -fPIC -DPIC -o .libs/muscle_tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_upgma.c -o muscle_upgma.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ktuple_pair.c -o ktuple_pair.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mbed.lo mbed.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c mbed.c -fPIC -DPIC -o .libs/mbed.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pair_dist.lo pair_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c pair_dist.c -fPIC -DPIC -o .libs/pair_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_tree.c -o muscle_tree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign_wrapper.c -o hhalign_wrapper.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c pair_dist.c -o pair_dist.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c mbed.c -o mbed.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o progress.lo progress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.c -fPIC -DPIC -o .libs/progress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.c -o progress.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seq.lo seq.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o symmatrix.lo symmatrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.c -fPIC -DPIC -o .libs/seq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -fPIC -DPIC -o .libs/symmatrix.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tree.lo tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -fPIC -DPIC -o .libs/tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -o symmatrix.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -o tree.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -fPIC -DPIC -o .libs/util.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weights.lo weights.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -fPIC -DPIC -o .libs/weights.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -o util.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.c -o seq.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -o weights.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link gcc -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclustal.la hhalign_wrapper.lo ktuple_pair.lo list.lo log.lo muscle_upgma.lo muscle_tree.lo mbed.lo pair_dist.lo progress.lo seq.lo symmatrix.lo tree.lo util.lo weights.lo -largtable2 -lm libtool: link: ar cru .libs/libclustal.a .libs/hhalign_wrapper.o .libs/ktuple_pair.o .libs/list.o .libs/log.o .libs/muscle_upgma.o .libs/muscle_tree.o .libs/mbed.o .libs/pair_dist.o .libs/progress.o .libs/seq.o .libs/symmatrix.o .libs/tree.o .libs/util.o .libs/weights.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libclustal.a libtool: link: ( cd ".libs" && rm -f "libclustal.la" && ln -s "../libclustal.la" "libclustal.la" ) make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal-omega.lo clustal-omega.c g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mymain.o mymain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -fPIC -DPIC -o .libs/clustal-omega.o clustal-omega.c: In function ‘PrintLongVersion’: clustal-omega.c:152:49: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] PACKAGE_VERSION, PACKAGE_CODENAME, __DATE__); ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -o clustal-omega.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -static -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclustalo.la -rpath /usr/lib/aarch64-linux-gnu clustal-omega.lo clustal/libclustal.la hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la -largtable2 -lm libtool: link: (cd .libs/libclustalo.lax/libclustal.a && ar x "/<>/src/clustal/.libs/libclustal.a") libtool: link: (cd .libs/libclustalo.lax/libhhalign.a && ar x "/<>/src/hhalign/.libs/libhhalign.a") libtool: link: (cd .libs/libclustalo.lax/libsquid.a && ar x "/<>/src/squid/.libs/libsquid.a") libtool: link: (cd .libs/libclustalo.lax/libkmpp.a && ar x "/<>/src/kmpp/.libs/libkmpp.a") libtool: link: ar cru .libs/libclustalo.a clustal-omega.o .libs/libclustalo.lax/libclustal.a/hhalign_wrapper.o .libs/libclustalo.lax/libclustal.a/ktuple_pair.o .libs/libclustalo.lax/libclustal.a/list.o .libs/libclustalo.lax/libclustal.a/log.o .libs/libclustalo.lax/libclustal.a/mbed.o .libs/libclustalo.lax/libclustal.a/muscle_tree.o .libs/libclustalo.lax/libclustal.a/muscle_upgma.o .libs/libclustalo.lax/libclustal.a/pair_dist.o .libs/libclustalo.lax/libclustal.a/progress.o .libs/libclustalo.lax/libclustal.a/seq.o .libs/libclustalo.lax/libclustal.a/symmatrix.o .libs/libclustalo.lax/libclustal.a/tree.o .libs/libclustalo.lax/libclustal.a/util.o .libs/libclustalo.lax/libclustal.a/weights.o .libs/libclustalo.lax/libhhalign.a/hhalign.o .libs/libclustalo.lax/libsquid.a/a2m.o .libs/libclustalo.lax/libsquid.a/aligneval.o .libs/libclustalo.lax/libsquid.a/alignio.o .libs/libclustalo.lax/libsquid.a/clustal.o .libs/libclustalo.lax/libsquid.a/cluster.o .libs/libclustalo.lax/libsquid.a/dayhoff.o .libs/libclustalo.lax/libsquid.a/eps.o .libs/libclustalo.lax/libsquid.a/file.o .libs/libclustalo.lax/libsquid.a/getopt.o .libs/libclustalo.lax/libsquid.a/gki.o .libs/libclustalo.lax/libsquid.a/gsi.o .libs/libclustalo.lax/libsquid.a/gsi64.o .libs/libclustalo.lax/libsquid.a/hsregex.o .libs/libclustalo.lax/libsquid.a/iupac.o .libs/libclustalo.lax/libsquid.a/msa.o .libs/libclustalo.lax/libsquid.a/msf.o .libs/libclustalo.lax/libsquid.a/phylip.o .libs/libclustalo.lax/libsquid.a/revcomp.o .libs/libclustalo.lax/libsquid.a/rk.o .libs/libclustalo.lax/libsquid.a/selex.o .libs/libclustalo.lax/libsquid.a/seqencode.o .libs/libclustalo.lax/libsquid.a/shuffle.o .libs/libclustalo.lax/libsquid.a/sqerror.o .libs/libclustalo.lax/libsquid.a/sqio.o .libs/libclustalo.lax/libsquid.a/squidcore.o .libs/libclustalo.lax/libsquid.a/sre_ctype.o .libs/libclustalo.lax/libsquid.a/sre_math.o .libs/libclustalo.lax/libsquid.a/sre_random.o .libs/libclustalo.lax/libsquid.a/sre_string.o .libs/libclustalo.lax/libsquid.a/ssi.o .libs/libclustalo.lax/libsquid.a/stack.o .libs/libclustalo.lax/libsquid.a/stockholm.o .libs/libclustalo.lax/libsquid.a/stopwatch.o .libs/libclustalo.lax/libsquid.a/translate.o .libs/libclustalo.lax/libsquid.a/types.o .libs/libclustalo.lax/libsquid.a/vectorops.o .libs/libclustalo.lax/libsquid.a/weight.o .libs/libclustalo.lax/libkmpp.a/KMeans.o .libs/libclustalo.lax/libkmpp.a/KmTree.o .libs/libclustalo.lax/libkmpp.a/KmUtils.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libclustalo.a libtool: link: rm -fr .libs/libclustalo.lax libtool: link: ( cd ".libs" && rm -f "libclustalo.la" && ln -s "../libclustalo.la" "libclustalo.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o clustalo main.o mymain.o libclustalo.la -largtable2 -lm libtool: link: g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o clustalo main.o mymain.o ./.libs/libclustalo.a /usr/lib/aarch64-linux-gnu/libargtable2.so -lm -fopenmp /usr/bin/ld: ./.libs/libclustalo.a(clustal-omega.o): in function `AlnToHHMFile': ./src/clustal-omega.c:393: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' Making check in hhalign make[3]: Entering directory '/<>/src/hhalign' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/hhalign' Making check in squid make[3]: Entering directory '/<>/src/squid' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/squid' Making check in kmpp make[3]: Entering directory '/<>/src/kmpp' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/kmpp' Making check in clustal make[3]: Entering directory '/<>/src/clustal' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/clustal' make[3]: Entering directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with linktree dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' Making install in hhalign make[4]: Entering directory '/<>/src/hhalign' make[5]: Entering directory '/<>/src/hhalign' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/hhalign' /usr/bin/install -c -m 644 general.h hhfunc.h '/<>/debian/tmp/usr/include/clustalo/hhalign' make[5]: Leaving directory '/<>/src/hhalign' make[4]: Leaving directory '/<>/src/hhalign' Making install in squid make[4]: Entering directory '/<>/src/squid' make[5]: Entering directory '/<>/src/squid' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/squid' /usr/bin/install -c -m 644 gki.h gsi64.h msa.h rk.h squid.h stopwatch.h sqfuncs.h sre_random.h ssi.h stockholm.h vectorops.h version.h '/<>/debian/tmp/usr/include/clustalo/squid' make[5]: Leaving directory '/<>/src/squid' make[4]: Leaving directory '/<>/src/squid' Making install in kmpp make[4]: Entering directory '/<>/src/kmpp' make[5]: Entering directory '/<>/src/kmpp' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/kmpp' make[4]: Leaving directory '/<>/src/kmpp' Making install in clustal make[4]: Entering directory '/<>/src/clustal' make[5]: Entering directory '/<>/src/clustal' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/clustal' /usr/bin/install -c -m 644 hhalign_wrapper.h ktuple_pair.h log.h mbed.h muscle_tree.h pair_dist.h progress.h seq.h symmatrix.h tree.h util.h weights.h '/<>/debian/tmp/usr/include/clustalo/clustal' make[5]: Leaving directory '/<>/src/clustal' make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' make[5]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libclustalo.la '/<>/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclustalo.lai /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclustalo.la libtool: install: /usr/bin/install -c .libs/libclustalo.a /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclustalo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclustalo.a libtool: install: ranlib /<>/debian/tmp/usr/lib/aarch64-linux-gnu/libclustalo.a libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c clustalo '/<>/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c clustalo /<>/debian/tmp/usr/bin/clustalo /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/' /usr/bin/install -c -m 644 clustal-omega-config.h clustal-omega.h '/<>/debian/tmp/usr/include/clustalo/' make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/clustal-omega' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/clustal-omega' /bin/mkdir -p '/<>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clustalo.pc '/<>/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' rm -rf debian/tmp/usr/lib/pkgconfig rm -f debian/tmp/usr/lib/*/libclustalo.la mv debian/tmp/usr/include debian/libclustalo-dev/usr mv debian/tmp/usr/lib debian/libclustalo-dev/usr mv debian/tmp/usr/bin debian/clustalo/usr make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_linktree -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libclustalo-dev: unknown substitution variable ${shlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libclustalo-dev (in debian/libclustalo-dev); do_strip: , oemstrip: pkgstriptranslations: processing clustalo (in debian/clustalo); do_strip: , oemstrip: pkgstriptranslations: processing clustalo-dbgsym (in debian/.debhelper/clustalo/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libclustalo-dev/DEBIAN/control, package libclustalo-dev, directory debian/libclustalo-dev INFO: pkgstripfiles: waiting for lock (libclustalo-dev) ... pkgstripfiles: processing control file: debian/.debhelper/clustalo/dbgsym-root/DEBIAN/control, package clustalo-dbgsym, directory debian/.debhelper/clustalo/dbgsym-root dpkg-deb: building package 'clustalo-dbgsym' in 'debian/.debhelper/scratch-space/build-clustalo/clustalo-dbgsym_1.2.4-2_arm64.deb'. Renaming clustalo-dbgsym_1.2.4-2_arm64.deb to clustalo-dbgsym_1.2.4-2_arm64.ddeb INFO: pkgstripfiles: waiting for lock (libclustalo-dev) ... INFO: pkgstripfiles: waiting for lock (libclustalo-dev) ... INFO: pkgstripfiles: waiting for lock (libclustalo-dev) ... INFO: pkgstripfiles: waiting for lock (libclustalo-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalo/DEBIAN/control, package clustalo, directory debian/clustalo pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalo ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalo' in '../clustalo_1.2.4-2_arm64.deb'. Searching for duplicated docs in dependency clustalo... symlinking changelog.Debian.gz in libclustalo-dev to file in clustalo pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclustalo-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclustalo-dev' in '../libclustalo-dev_1.2.4-2_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clustalo_1.2.4-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clustalo-1.2.4 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180718-2317 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalo_1.2.4-2_arm64.changes: ------------------------------- Format: 1.8 Date: Wed, 18 Jul 2018 21:11:52 +0200 Source: clustalo Binary: clustalo libclustalo-dev libclustalo-doc Architecture: arm64 Version: 1.2.4-2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clustalo - General purpose multiple sequence alignment program for proteins libclustalo-dev - library to embed Clustal Omega libclustalo-doc - API documentation for library to embed Clustal Omega Changes: clustalo (1.2.4-2) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 Checksums-Sha1: 4de032f6817dca957544f2c5f23cad62d41d6d02 771824 clustalo-dbgsym_1.2.4-2_arm64.ddeb 8ff27b944611dee40a02cd9a522888b3104ce208 7211 clustalo_1.2.4-2_arm64.buildinfo 04b29c654ec11ae1dd231e7c0a30ec11de61ba1e 233120 clustalo_1.2.4-2_arm64.deb d5d72647e0ce37768ee736f422055a235cce8114 291292 libclustalo-dev_1.2.4-2_arm64.deb Checksums-Sha256: 328bb8fe563e82ba53392f115c7f282c0d096e1c3e5e1a9ca7abc1ea4c7cf915 771824 clustalo-dbgsym_1.2.4-2_arm64.ddeb 57c920e9b23dc1f45ab9ce9774c467a36677aeb86c294ceaa2a30ec24f33f3f0 7211 clustalo_1.2.4-2_arm64.buildinfo 6a71e0cc76dfac0af1ae0c5d43e00d45e03c6bf0a4effa0ba74bfff4a1d6b7ad 233120 clustalo_1.2.4-2_arm64.deb 857d99d4e33944fec383a63f5f3f2766d49d0261dc69336b9278506e2414f76e 291292 libclustalo-dev_1.2.4-2_arm64.deb Files: 05753f841e4e38840540d276ad20f375 771824 debug optional clustalo-dbgsym_1.2.4-2_arm64.ddeb dfc8091d9d98b6ff74e4d3b5500b1bc3 7211 science optional clustalo_1.2.4-2_arm64.buildinfo fbb920a2e4de3577f6b7fd87d1d62a89 233120 science optional clustalo_1.2.4-2_arm64.deb 11e24ce9a8b623128f4473cf4858f9d8 291292 libdevel optional libclustalo-dev_1.2.4-2_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalo_1.2.4-2_arm64.deb -------------------------- new debian package, version 2.0. size 233120 bytes: control archive=896 bytes. 729 bytes, 15 lines control 406 bytes, 6 lines md5sums Package: clustalo Version: 1.2.4-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 573 Depends: libargtable2-0 (>= 7), libc6 (>= 2.27), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.clustal.org/omega/ Description: General purpose multiple sequence alignment program for proteins Clustal-Omega is a general purpose multiple sequence alignment (MSA) program for dna/rna/proteins. It produces high quality MSAs and is capable of handling data-sets of hundreds of thousands of sequences in reasonable time. drwxr-xr-x root/root 0 2018-07-18 19:11 ./ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/bin/ -rwxr-xr-x root/root 556360 2018-07-18 19:11 ./usr/bin/clustalo drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/clustalo/ -rw-r--r-- root/root 10994 2013-08-27 12:07 ./usr/share/doc/clustalo/README.gz -rw-r--r-- root/root 893 2018-07-18 19:11 ./usr/share/doc/clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2018-07-18 19:11 ./usr/share/doc/clustalo/copyright drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/clustalo/examples/ -rw-r--r-- root/root 2269 2018-07-18 19:11 ./usr/share/doc/clustalo/examples/example.fa drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/man/man1/ -rw-r--r-- root/root 1083 2018-07-18 19:11 ./usr/share/man/man1/clustalo.1.gz libclustalo-dev_1.2.4-2_arm64.deb --------------------------------- new debian package, version 2.0. size 291292 bytes: control archive=1516 bytes. 584 bytes, 16 lines control 2244 bytes, 31 lines md5sums Package: libclustalo-dev Source: clustalo Version: 1.2.4-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1250 Depends: libargtable2-dev, clustalo (= 1.2.4-2) Suggests: libclustalo-doc Section: libdevel Priority: optional Homepage: http://www.clustal.org/omega/ Description: library to embed Clustal Omega This package contains headers and libraries to include Clustal Omega in a program. It provides clustal usage with an API. drwxr-xr-x root/root 0 2018-07-18 19:11 ./ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/ -rw-r--r-- root/root 9523 2018-07-18 19:11 ./usr/include/clustalo/clustal-omega-config.h -rw-r--r-- root/root 4740 2018-07-18 19:11 ./usr/include/clustalo/clustal-omega.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/clustal/ -rw-r--r-- root/root 1159 2018-07-18 19:11 ./usr/include/clustalo/clustal/hhalign_wrapper.h -rw-r--r-- root/root 1251 2018-07-18 19:11 ./usr/include/clustalo/clustal/ktuple_pair.h -rw-r--r-- root/root 1787 2018-07-18 19:11 ./usr/include/clustalo/clustal/log.h -rw-r--r-- root/root 866 2018-07-18 19:11 ./usr/include/clustalo/clustal/mbed.h -rw-r--r-- root/root 4112 2018-07-18 19:11 ./usr/include/clustalo/clustal/muscle_tree.h -rw-r--r-- root/root 1303 2018-07-18 19:11 ./usr/include/clustalo/clustal/pair_dist.h -rw-r--r-- root/root 1257 2018-07-18 19:11 ./usr/include/clustalo/clustal/progress.h -rw-r--r-- root/root 4032 2018-07-18 19:11 ./usr/include/clustalo/clustal/seq.h -rw-r--r-- root/root 2310 2018-07-18 19:11 ./usr/include/clustalo/clustal/symmatrix.h -rw-r--r-- root/root 1066 2018-07-18 19:11 ./usr/include/clustalo/clustal/tree.h -rw-r--r-- root/root 2308 2018-07-18 19:11 ./usr/include/clustalo/clustal/util.h -rw-r--r-- root/root 741 2018-07-18 19:11 ./usr/include/clustalo/clustal/weights.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/hhalign/ -rw-r--r-- root/root 2961 2018-07-18 19:11 ./usr/include/clustalo/hhalign/general.h -rw-r--r-- root/root 859 2018-07-18 19:11 ./usr/include/clustalo/hhalign/hhfunc.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/squid/ -rw-r--r-- root/root 1381 2018-07-18 19:11 ./usr/include/clustalo/squid/gki.h -rw-r--r-- root/root 3473 2018-07-18 19:11 ./usr/include/clustalo/squid/gsi64.h -rw-r--r-- root/root 13442 2018-07-18 19:11 ./usr/include/clustalo/squid/msa.h -rw-r--r-- root/root 1264 2018-07-18 19:11 ./usr/include/clustalo/squid/rk.h -rw-r--r-- root/root 10390 2018-07-18 19:11 ./usr/include/clustalo/squid/sqfuncs.h -rw-r--r-- root/root 19594 2018-07-18 19:11 ./usr/include/clustalo/squid/squid.h -rw-r--r-- root/root 489 2018-07-18 19:11 ./usr/include/clustalo/squid/sre_random.h -rw-r--r-- root/root 7610 2018-07-18 19:11 ./usr/include/clustalo/squid/ssi.h -rw-r--r-- root/root 1868 2018-07-18 19:11 ./usr/include/clustalo/squid/stockholm.h -rw-r--r-- root/root 1937 2018-07-18 19:11 ./usr/include/clustalo/squid/stopwatch.h -rw-r--r-- root/root 1434 2018-07-18 19:11 ./usr/include/clustalo/squid/vectorops.h -rw-r--r-- root/root 333 2018-07-18 19:11 ./usr/include/clustalo/squid/version.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 1141664 2018-07-18 19:11 ./usr/lib/aarch64-linux-gnu/libclustalo.a drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/lib/aarch64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 248 2018-07-18 19:11 ./usr/lib/aarch64-linux-gnu/pkgconfig/clustalo.pc drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/libclustalo-dev/ lrwxrwxrwx root/root 0 2018-07-18 19:11 ./usr/share/doc/libclustalo-dev/changelog.Debian.gz -> ../clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2018-07-18 19:11 ./usr/share/doc/libclustalo-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 40880 Build-Time: 155 Distribution: cosmic-proposed Host Architecture: arm64 Install-Time: 33 Job: clustalo_1.2.4-2.dsc Machine Architecture: arm64 Package: clustalo Package-Time: 190 Source-Version: 1.2.4-2 Space: 40880 Status: successful Version: 1.2.4-2 -------------------------------------------------------------------------------- Finished at 20180718-2317 Build needed 00:03:10, 40880k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15144862 Scanning for processes to kill in build PACKAGEBUILD-15144862