https://launchpad.net/ubuntu/+source/clustalo/1.2.4-2/+build/15144866 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-s390x-014 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 09:18:59 UTC 2018 s390x Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 18 Jul 23:10:53 ntpdate[1792]: adjust time server 10.211.37.1 offset 0.133364 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15144866 /home/buildd/filecache-default/17124f3eec304530bbb077109f97da7d4ad52147 Creating target for build PACKAGEBUILD-15144866 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15144866 Starting target for build PACKAGEBUILD-15144866 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15144866 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15144866 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15144866 Updating target for build PACKAGEBUILD-15144866 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x Packages [1016 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [524 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe s390x Packages [8259 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5018 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x Packages [93.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [54.7 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x Packages [378 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [192 kB] Fetched 16.0 MB in 8s (2010 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 102 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 68.9 MB of archives. After this operation, 87.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main s390x base-files s390x 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo6 s390x 6.1+20180210-4ubuntu1 [80.5 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x debianutils s390x 4.8.6 [85.2 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x bash s390x 4.4.18-2ubuntu2 [583 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdutils s390x 1:2.32-0.1ubuntu1 [58.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x tar s390x 1.30+dfsg-2 [230 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg s390x 1.19.0.5ubuntu3 [1121 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libext2fs2 s390x 1.44.3-1 [154 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fsprogs s390x 1.44.3-1 [374 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-bin s390x 6.1+20180210-4ubuntu1 [160 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libperl5.26 s390x 5.26.2-6 [3378 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x perl s390x 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x perl-base s390x 5.26.2-6 [1310 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x sed s390x 4.5-1 [183 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x libuuid1 s390x 2.32-0.1ubuntu1 [20.0 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x libblkid1 s390x 2.32-0.1ubuntu1 [120 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x libfdisk1 s390x 2.32-0.1ubuntu1 [155 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw6 s390x 6.1+20180210-4ubuntu1 [120 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libpcre3 s390x 2:8.39-10ubuntu2 [154 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libselinux1 s390x 2.8-1build1 [64.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main s390x libmount1 s390x 2.32-0.1ubuntu1 [129 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x libsmartcols1 s390x 2.32-0.1ubuntu1 [81.9 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x fdisk s390x 2.32-0.1ubuntu1 [103 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x util-linux s390x 2.32-0.1ubuntu1 [881 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x base-passwd s390x 3.5.45 [46.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main s390x ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgomp1 s390x 8.1.0-11ubuntu1 [69.8 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libitm1 s390x 8.1.0-11ubuntu1 [26.9 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-8-base s390x 8.1.0-11ubuntu1 [18.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgcc1 s390x 1:8.1.0-11ubuntu1 [25.1 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libcc1-0 s390x 8.1.0-11ubuntu1 [37.2 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libatomic1 s390x 8.1.0-11ubuntu1 [8420 B] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libstdc++6 s390x 8.1.0-11ubuntu1 [398 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x liblz4-1 s390x 1.8.2-1ubuntu1 [58.4 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libudev1 s390x 238-5ubuntu2 [52.6 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x libapt-pkg5.0 s390x 1.7.0~alpha2 [747 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x debconf all 1.5.67 [124 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x adduser all 3.117ubuntu1 [163 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgpg-error0 s390x 1.32-1 [53.1 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x libgcrypt20 s390x 1.8.3-1ubuntu1 [351 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x gpgv s390x 2.2.8-1ubuntu1 [181 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x libseccomp2 s390x 2.3.3-3ubuntu1 [41.3 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x apt s390x 1.7.0~alpha2 [1134 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libapparmor1 s390x 2.12-4ubuntu6 [30.3 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x libcap-ng0 s390x 0.7.9-1 [11.0 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x libaudit1 s390x 1:2.8.3-1ubuntu2 [37.1 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main s390x libargon2-1 s390x 0~20171227-0.1 [35.9 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x libcryptsetup12 s390x 2:2.0.3-6ubuntu1 [124 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x libkmod2 s390x 25-1ubuntu1 [38.3 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x mount s390x 2.32-0.1ubuntu1 [100 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses6 s390x 6.1+20180210-4ubuntu1 [94.4 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main s390x libprocps7 s390x 2:3.3.15-2ubuntu1 [31.0 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main s390x procps s390x 2:3.3.15-2ubuntu1 [221 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x systemd s390x 238-5ubuntu2 [2654 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsystemd0 s390x 238-5ubuntu2 [191 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x systemd-sysv s390x 238-5ubuntu2 [13.7 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main s390x libcom-err2 s390x 1.44.3-1 [9052 B] Get:60 http://ftpmaster.internal/ubuntu cosmic/main s390x libsepol1 s390x 2.8-1 [227 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main s390x libsemanage-common all 2.8-1build1 [7000 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main s390x libsemanage1 s390x 2.8-1build1 [79.0 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main s390x libss2 s390x 1.44.3-1 [10.7 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main s390x libgmp10 s390x 2:6.1.2+dfsg-3 [225 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main s390x libp11-kit0 s390x 0.23.12-2 [188 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main s390x libtasn1-6 s390x 4.13-3 [34.1 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main s390x libncurses5 s390x 6.1+20180210-4ubuntu1 [89.1 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main s390x libncursesw5 s390x 6.1+20180210-4ubuntu1 [108 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main s390x libtinfo5 s390x 6.1+20180210-4ubuntu1 [76.4 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main s390x libargon2-0 s390x 0~20171227-0.1 [4536 B] Get:71 http://ftpmaster.internal/ubuntu cosmic/main s390x readline-common all 7.0-5 [52.2 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main s390x libreadline7 s390x 7.0-5 [117 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main s390x libslang2 s390x 2.3.2-1ubuntu1 [417 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libsqlite3-0 s390x 3.24.0-1 [472 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main s390x libssl1.1 s390x 1.1.0g-2ubuntu5 [810 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main s390x openssl s390x 1.1.0g-2ubuntu5 [519 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main s390x tzdata all 2018e-1 [188 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libpng16-16 s390x 1.6.34-2 [171 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libbinutils s390x 2.31.1-1ubuntu2 [304 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x binutils-common s390x 2.31.1-1ubuntu2 [194 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x binutils s390x 2.31.1-1ubuntu2 [3332 B] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x binutils-s390x-linux-gnu s390x 2.31.1-1ubuntu2 [1678 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x cpp-8 s390x 8.1.0-11ubuntu1 [5495 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x cpp s390x 4:8.1.0-2ubuntu0.3 [27.6 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libasan5 s390x 8.1.0-11ubuntu1 [326 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libubsan1 s390x 8.1.0-11ubuntu1 [115 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgcc-8-dev s390x 8.1.0-11ubuntu1 [652 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-8 s390x 8.1.0-11ubuntu1 [6251 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc s390x 4:8.1.0-2ubuntu0.3 [5188 B] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libstdc++-8-dev s390x 8.1.0-11ubuntu1 [1496 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x g++-8 s390x 8.1.0-11ubuntu1 [6352 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x g++ s390x 4:8.1.0-2ubuntu0.3 [1584 B] Get:93 http://ftpmaster.internal/ubuntu cosmic/main s390x make s390x 4.2.1-1.1 [155 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main s390x dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main s390x libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main s390x build-essential s390x 12.5ubuntu2 [4740 B] Get:97 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libasan4 s390x 7.3.0-26ubuntu1 [319 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libubsan0 s390x 7.3.0-26ubuntu1 [120 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x g++-7 s390x 7.3.0-26ubuntu1 [5991 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-7 s390x 7.3.0-26ubuntu1 [5892 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libstdc++-7-dev s390x 7.3.0-26ubuntu1 [1453 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libgcc-7-dev s390x 7.3.0-26ubuntu1 [641 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x cpp-7 s390x 7.3.0-26ubuntu1 [5186 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x gcc-7-base s390x 7.3.0-26ubuntu1 [18.9 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main s390x e2fslibs s390x 1.44.3-1 [2704 B] Get:106 http://ftpmaster.internal/ubuntu cosmic/main s390x pinentry-curses s390x 1.1.0-1build2 [34.4 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main s390x libnpth0 s390x 1.6-1 [7500 B] Get:108 http://ftpmaster.internal/ubuntu cosmic/main s390x gpg s390x 2.2.8-1ubuntu1 [428 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main s390x gpgconf s390x 2.2.8-1ubuntu1 [115 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main s390x gpg-agent s390x 2.2.8-1ubuntu1 [208 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main s390x libcomerr2 s390x 1.44.3-1 [2704 B] Get:112 http://ftpmaster.internal/ubuntu cosmic/main s390x libusb-0.1-4 s390x 2:0.1.12-32 [16.5 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x linux-libc-dev s390x 4.17.0-5.6 [1000 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main s390x pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.9 MB in 5s (12.8 MB/s) (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_s390x.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:s390x. (Reading database ... 12382 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking libtinfo6:s390x (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:s390x (6.1+20180210-4ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_s390x.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_s390x.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_s390x.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_s390x.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.3-1_s390x.deb ... Unpacking libext2fs2:s390x (1.44.3-1) over (1.44.1-1) ... Setting up libext2fs2:s390x (1.44.3-1) ... (Reading database ... 12391 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.3-1_s390x.deb ... Unpacking e2fsprogs (1.44.3-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.3-1) ... (Reading database ... 12393 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-4ubuntu1_s390x.deb ... Unpacking ncurses-bin (6.1+20180210-4ubuntu1) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-4ubuntu1) ... (Reading database ... 12393 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-6_s390x.deb ... Unpacking perl (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-6_all.deb ... Unpacking perl-modules-5.26 (5.26.2-6) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-6_s390x.deb ... 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Setting up cpp (4:8.1.0-2ubuntu0.3) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:s390x (8.1.0-11ubuntu1) ... Setting up make (4.2.1-1.1) ... Setting up pkgbinarymangler (141) ... Setting up e2fslibs:s390x (1.44.3-1) ... Setting up libpng16-16:s390x (1.6.34-2) ... Setting up libncursesw5:s390x (6.1+20180210-4ubuntu1) ... Setting up libreadline7:s390x (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 18 23:11:25 UTC 2018. Universal Time is now: Wed Jul 18 23:11:25 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (238-5ubuntu2) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:s390x (4.17.0-5.6) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:s390x (7.3.0-26ubuntu1) ... Setting up binutils-common:s390x (2.31.1-1ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:s390x (5.26.2-6) ... Setting up libssl1.1:s390x (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:s390x (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libcomerr2:s390x (1.44.3-1) ... Setting up libslang2:s390x (2.3.2-1ubuntu1) ... Setting up libasan5:s390x (8.1.0-11ubuntu1) ... Setting up libusb-0.1-4:s390x (2:0.1.12-32) ... Setting up libitm1:s390x (8.1.0-11ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libubsan1:s390x (8.1.0-11ubuntu1) ... Setting up libasan4:s390x (7.3.0-26ubuntu1) ... Setting up libbinutils:s390x (2.31.1-1ubuntu2) ... Setting up libubsan0:s390x (7.3.0-26ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.31.1-1ubuntu2) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:s390x (7.3.0-26ubuntu1) ... Setting up cpp-7 (7.3.0-26ubuntu1) ... Setting up libstdc++-7-dev:s390x (7.3.0-26ubuntu1) ... Setting up perl (5.26.2-6) ... Setting up libgcc-8-dev:s390x (8.1.0-11ubuntu1) ... Setting up binutils (2.31.1-1ubuntu2) ... Setting up libstdc++-8-dev:s390x (8.1.0-11ubuntu1) ... Setting up gcc-7 (7.3.0-26ubuntu1) ... Setting up g++-7 (7.3.0-26ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc-8 (8.1.0-11ubuntu1) ... Setting up g++-8 (8.1.0-11ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up gcc (4:8.1.0-2ubuntu0.3) ... Setting up g++ (4:8.1.0-2ubuntu0.3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15144866 s390x cosmic-proposed -c chroot:build-PACKAGEBUILD-15144866 --arch=s390x --dist=cosmic-proposed --nolog clustalo_1.2.4-2.dsc Initiating build PACKAGEBUILD-15144866 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-130-generic #156-Ubuntu SMP Thu Jun 14 09:18:59 UTC 2018 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-s390x-014.buildd +==============================================================================+ | clustalo 1.2.4-2 (s390x) 18 Jul 2018 23:11 | +==============================================================================+ Package: clustalo Version: 1.2.4-2 Source Version: 1.2.4-2 Distribution: cosmic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/clustalo-_MOrZd/clustalo-1.2.4' with '<>' I: NOTICE: Log filtering will replace 'build/clustalo-_MOrZd' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15144866/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalo_1.2.4-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Y6LzI3/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Y6LzI3/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Y6LzI3/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Y6LzI3/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Y6LzI3/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Y6LzI3/apt_archive ./ Packages [529 B] Fetched 2862 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Y6LzI3/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13383 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common Filtered Build-Depends: debhelper (>= 11~), dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common dpkg-deb: building package 'sbuild-build-depends-clustalo-dummy' in '/<>/resolver-hX3VtA/apt_archive/sbuild-build-depends-clustalo-dummy.deb'. Ign:1 copy:/<>/resolver-hX3VtA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-hX3VtA/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-hX3VtA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-hX3VtA/apt_archive ./ Sources [256 B] Get:5 copy:/<>/resolver-hX3VtA/apt_archive ./ Packages [577 B] Fetched 2952 B in 213503982334601d 7h 0min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clustalo build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3 libdatrie1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblab-gamut1 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sphinx-common ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx fonts-liberation libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common libltdl-dev libmail-sendmail-perl python-sphinx | python3-sphinx The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-6.0 libcroco3 libdatrie1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblab-gamut1 libllvm6.0 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sbuild-build-depends-clustalo-dummy sphinx-common ucf x11-common 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 50.5 MB of archives. After this operation, 213 MB of additional disk space will be used. Get:1 copy:/<>/resolver-hX3VtA/apt_archive ./ sbuild-build-depends-clustalo-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main s390x libbsd0 s390x 0.9.1-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main s390x bsdmainutils s390x 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main s390x groff-base s390x 1.22.3-10 [1174 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main s390x man-db s390x 2.8.3-2 [1007 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main s390x libexpat1 s390x 2.2.5-3 [79.3 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main s390x libfreetype6 s390x 2.8.1-2ubuntu2 [314 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main s390x ucf all 3.0038 [50.5 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main s390x fonts-dejavu-core all 2.37-1 [1041 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main s390x fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main s390x libfontconfig1 s390x 2.12.6-0ubuntu2 [132 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main s390x fontconfig s390x 2.12.6-0ubuntu2 [168 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main s390x libjpeg-turbo8 s390x 1.5.2-0ubuntu6 [100 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic-mgc s390x 1:5.33-3 [193 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main s390x libmagic1 s390x 1:5.33-3 [68.2 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main s390x file s390x 1:5.33-3 [22.7 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main s390x libelf1 s390x 0.170-0.5 [42.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libfribidi0 s390x 1.0.4-1 [26.8 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main s390x libglib2.0-0 s390x 2.56.1-2ubuntu1 [1077 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main s390x libicu60 s390x 60.2-6ubuntu1 [7837 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libxml2 s390x 2.9.4+dfsg1-7build1 [588 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext-base s390x 0.19.8.1-6build1 [48.2 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main s390x libedit2 s390x 3.1-20180525-1 [74.0 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main s390x libxau6 s390x 1:1.0.8-1 [7420 B] Get:26 http://ftpmaster.internal/ubuntu cosmic/main s390x libxdmcp6 s390x 1:1.1.2-3 [10.7 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libxcb1 s390x 1.13-2 [43.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libx11-data all 2:1.6.5-1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libx11-6 s390x 2:1.6.5-1 [542 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main s390x libxext6 s390x 2:1.3.3-1 [27.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main s390x libsigsegv2 s390x 2.12-2 [13.8 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main s390x autoconf all 2.69-11 [322 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main s390x autotools-dev all 20180224.1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main s390x automake all 1:1.15.1-3ubuntu2 [509 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main s390x autopoint all 0.19.8.1-6build1 [412 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main s390x libtool all 2.4.6-2.1build1 [196 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-autoreconf all 19 [16.1 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main s390x libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main s390x libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main s390x dh-strip-nondeterminism all 0.042-1 [5188 B] Get:43 http://ftpmaster.internal/ubuntu cosmic/main s390x dwz s390x 0.12-2 [73.2 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main s390x libcroco3 s390x 0.6.12-2 [74.2 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main s390x gettext s390x 0.19.8.1-6build1 [858 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main s390x po-debconf all 1.0.20 [232 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main s390x debhelper all 11.3.2ubuntu1 [883 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/universe s390x dh-linktree all 0.6 [10.7 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main s390x libllvm6.0 s390x 1:6.0.1-2ubuntu1 [13.6 MB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main s390x libclang1-6.0 s390x 1:6.0.1-2ubuntu1 [6305 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main s390x libxapian30 s390x 1.4.6-2 [577 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main s390x doxygen s390x 1.8.13-10 [3554 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/universe s390x libann0 s390x 1.1.2+doc-7 [24.9 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libcdt5 s390x 2.40.1-3 [18.9 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libcgraph6 s390x 2.40.1-3 [39.4 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main s390x libjpeg8 s390x 8c-2ubuntu8 [2142 B] Get:58 http://ftpmaster.internal/ubuntu cosmic/main s390x libjbig0 s390x 2.1-3.1build1 [26.3 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main s390x libtiff5 s390x 4.0.9-6 [142 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main s390x libwebp6 s390x 0.6.1-2 [149 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main s390x libxpm4 s390x 1:3.5.12-1 [32.6 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main s390x libgd3 s390x 2.2.5-4 [114 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/universe s390x libgts-0.7-5 s390x 0.7.6+darcs121130-4 [137 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main s390x libpixman-1-0 s390x 0.34.0-2 [135 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libxcb-render0 s390x 1.13-2 [14.7 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libxcb-shm0 s390x 1.13-2 [5500 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main s390x libxrender1 s390x 1:0.9.10-1 [17.8 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main s390x libcairo2 s390x 1.15.10-3 [533 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main s390x libltdl7 s390x 2.4.6-2.1build1 [37.8 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main s390x libthai-data all 0.1.27-2 [133 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main s390x libdatrie1 s390x 0.2.12-1 [18.0 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main s390x libthai0 s390x 0.1.27-2 [18.2 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main s390x libpango-1.0-0 s390x 1.42.1-2 [147 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main s390x libgraphite2-3 s390x 1.3.11-2 [71.3 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main s390x libharfbuzz0b s390x 1.8.3-1 [241 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main s390x libpangoft2-1.0-0 s390x 1.42.1-2 [32.3 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main s390x libpangocairo-1.0-0 s390x 1.42.1-2 [20.8 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libpathplan4 s390x 2.40.1-3 [22.4 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libgvc6 s390x 2.40.1-3 [557 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x libgvpr2 s390x 2.40.1-3 [156 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x liblab-gamut1 s390x 2.40.1-3 [177 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main s390x x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main s390x libice6 s390x 2:1.0.9-2 [36.9 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main s390x libsm6 s390x 2:1.2.2-1 [15.3 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main s390x libxt6 s390x 1:1.1.5-1 [147 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main s390x libxmu6 s390x 2:1.1.2-2 [43.8 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main s390x libxaw7 s390x 2:1.0.13-1 [163 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/universe s390x graphviz s390x 2.40.1-3 [560 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/universe s390x libargtable2-0 s390x 13-1 [13.4 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/universe s390x libargtable2-docs all 13-1 [2618 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/universe s390x libargtable2-dev s390x 13-1 [51.5 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main s390x libjs-jquery all 3.2.1-1 [152 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main s390x libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x libjs-sphinxdoc all 1.7.6-1 [91.7 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic-proposed/main s390x sphinx-common all 1.7.6-1 [437 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.5 MB in 2s (21.7 MB/s) Selecting previously unselected package libbsd0:s390x. 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Setting up libxml2:s390x (2.9.4+dfsg1-7build1) ... Setting up libfreetype6:s390x (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:s390x (1:5.33-3) ... Setting up libgraphite2-3:s390x (1.3.11-2) ... Setting up libcroco3:s390x (0.6.12-2) ... Setting up libpixman-1-0:s390x (0.34.0-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Processing triggers for systemd (238-5ubuntu2) ... Setting up libltdl7:s390x (2.4.6-2.1build1) ... Setting up sphinx-common (1.7.6-1) ... Setting up libann0 (1.1.2+doc-7) ... Setting up libfribidi0:s390x (1.0.4-1) ... Setting up libargtable2-dev (13-1) ... Setting up libthai-data (0.1.27-2) ... Setting up libxdmcp6:s390x (1:1.1.2-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu8) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libcdt5 (2.40.1-3) ... Setting up libx11-data (2:1.6.5-1) ... Setting up libxau6:s390x (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libcgraph6 (2.40.1-3) ... Setting up libwebp6:s390x (0.6.1-2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:s390x (8c-2ubuntu8) ... Setting up libgts-0.7-5:s390x (0.7.6+darcs121130-4) ... Setting up fontconfig-config (2.12.6-0ubuntu2) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libgvpr2 (2.40.1-3) ... Setting up doxygen (1.8.13-10) ... Setting up libharfbuzz0b:s390x (1.8.3-1) ... Setting up libtiff5:s390x (4.0.9-6) ... Setting up autoconf (2.69-11) ... Setting up libthai0:s390x (0.1.27-2) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:s390x (2:1.0.9-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:s390x (1.13-2) ... Setting up libtool (2.4.6-2.1build1) ... Setting up libfontconfig1:s390x (2.12.6-0ubuntu2) ... Setting up libsm6:s390x (2:1.2.2-1) ... Setting up libxcb-render0:s390x (1.13-2) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:s390x (2:1.6.5-1) ... Setting up libxcb-shm0:s390x (1.13-2) ... Setting up libxpm4:s390x (1:3.5.12-1) ... Setting up libxt6:s390x (1:1.1.5-1) ... Setting up libxrender1:s390x (1:0.9.10-1) ... Setting up fontconfig (2.12.6-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:s390x (2:1.3.3-1) ... Setting up libgd3:s390x (2.2.5-4) ... Setting up libxmu6:s390x (2:1.1.2-2) ... Setting up libpango-1.0-0:s390x (1.42.1-2) ... Setting up libxaw7:s390x (2:1.0.13-1) ... Setting up libcairo2:s390x (1.15.10-3) ... Setting up libpangoft2-1.0-0:s390x (1.42.1-2) ... Setting up libpangocairo-1.0-0:s390x (1.42.1-2) ... Setting up libgvc6 (2.40.1-3) ... Setting up graphviz (2.40.1-3) ... Setting up dh-autoreconf (19) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-linktree (0.6) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up sbuild-build-depends-clustalo-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (238-5ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-130-generic s390x (s390x) Toolchain package versions: binutils_2.31.1-1ubuntu2 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-26ubuntu1 g++-8_8.1.0-11ubuntu1 gcc-7_7.3.0-26ubuntu1 gcc-8_8.1.0-11ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-26ubuntu1 libstdc++-8-dev_8.1.0-11ubuntu1 libstdc++6_8.1.0-11ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31.1-1ubuntu2 binutils-common_2.31.1-1ubuntu2 binutils-s390x-linux-gnu_2.31.1-1ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:8.1.0-2ubuntu0.3 cpp-7_7.3.0-26ubuntu1 cpp-8_8.1.0-11ubuntu1 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-linktree_0.6 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 doxygen_1.8.13-10 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0ubuntu2 fontconfig-config_2.12.6-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:8.1.0-2ubuntu0.3 g++-7_7.3.0-26ubuntu1 g++-8_8.1.0-11ubuntu1 gcc_4:8.1.0-2ubuntu0.3 gcc-7_7.3.0-26ubuntu1 gcc-7-base_7.3.0-26ubuntu1 gcc-8_8.1.0-11ubuntu1 gcc-8-base_8.1.0-11ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 graphviz_2.40.1-3 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libann0_1.1.2+doc-7 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libargtable2-0_13-1 libargtable2-dev_13-1 libargtable2-docs_13-1 libasan4_7.3.0-26ubuntu1 libasan5_8.1.0-11ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-11ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31.1-1ubuntu2 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcairo2_1.15.10-3 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-11ubuntu1 libcdt5_2.40.1-3 libcgraph6_2.40.1-3 libclang1-6.0_1:6.0.1-2ubuntu1 libcom-err2_1.44.3-1 libcomerr2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.3-6ubuntu1 libdatrie1_0.2.12-1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libexpat1_2.2.5-3 libext2fs2_1.44.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfontconfig1_2.12.6-0ubuntu2 libfreetype6_2.8.1-2ubuntu2 libfribidi0_1.0.4-1 libgcc-7-dev_7.3.0-26ubuntu1 libgcc-8-dev_8.1.0-11ubuntu1 libgcc1_1:8.1.0-11ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgd3_2.2.5-4 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-11ubuntu1 libgpg-error0_1.32-1 libgraphite2-3_1.3.11-2 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.40.1-3 libgvpr2_2.40.1-3 libharfbuzz0b_1.8.3-1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-11ubuntu1 libjbig0_2.1-3.1build1 libjpeg-turbo8_1.5.2-0ubuntu6 libjpeg8_8c-2ubuntu8 libjs-jquery_3.2.1-1 libjs-sphinxdoc_1.7.6-1 libjs-underscore_1.8.3~dfsg-1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblab-gamut1_2.40.1-3 libllvm6.0_1:6.0.1-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl7_2.4.6-2.1build1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.6-1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpango-1.0-0_1.42.1-2 libpangocairo-1.0-0_1.42.1-2 libpangoft2-1.0-0_1.42.1-2 libpathplan4_2.40.1-3 libpcre3_2:8.39-10ubuntu2 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-26ubuntu1 libstdc++-8-dev_8.1.0-11ubuntu1 libstdc++6_8.1.0-11ubuntu1 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff5_4.0.9-6 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libubsan0_7.3.0-26ubuntu1 libubsan1_8.1.0-11ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libwebp6_0.6.1-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libxapian30_1.4.6-2 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.13-2 libxcb-shm0_1.13-2 libxcb1_1.13-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxml2_2.9.4+dfsg1-7build1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-5.6 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-clustalo-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 sphinx-common_1.7.6-1 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.32-0.1ubuntu1 x11-common_1:7.7+19ubuntu8 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jul 18 19:15:32 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalo_1.2.4-2.dsc dpkg-source: info: extracting clustalo in clustalo-1.2.4 dpkg-source: info: unpacking clustalo_1.2.4.orig.tar.gz dpkg-source: info: unpacking clustalo_1.2.4-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15144866 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15144866 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15144866 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalo dpkg-buildpackage: info: source version 1.2.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clustalo-1.2.4 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --with linktree debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f _configs.sed rm -rf doc make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with linktree dh_update_autotools_config -a dh_autoreconf -a configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:133: installing './compile' configure.ac:115: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Welcome to Clustal Omega - version 1.2.4 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 IMMMMS MMMMM, ~MMMMN ,MMMMM =MMMMM MMMMM ?MMMMM +MMMMM MMMMMS MMMMM MMMMM MMMMM: MMMMM MMMMM+ MMMMM MMMMM~ MMMMM MMMMM MMMMMZ MMMMM MMMMM ,MMMMZ MMMM8 MMMM+ MMMMS MMMM, MMMMO MMMM ,N SMMM MMM8 +8 ,M7 M+ M+ :M8 ,MMMMMMMMMMMMI MMMMMMMMMMMM8 ,MMMMMMMMMMMM8 MMMMMMMMMMMM8 ,MMMMMMMMMMMMN MMMMMMMMMMMM8 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking whether make sets $(MAKE)... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert s390x-ibm-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert s390x-ibm-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf64_s390 checking if the linker (/usr/bin/ld -m elf64_s390) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for memory.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for inline... inline checking for log in -lm... yes checking for log2 in -lm... yes checking argtable2.h usability... yes checking argtable2.h presence... yes checking for argtable2.h... yes checking for arg_parse in -largtable2... yes checking for OpenMP flag of C compiler... -fopenmp checking whether byte ordering is bigendian... yes configure: WARNING: Clustal Omega hasn't been tested on Big-Endian machines...expecting trouble! checking for ntohs... yes checking for ntohl... yes checking for ntons... no checking for ntonl... no checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for stroul... no checking for strtoull... yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for off_t... yes checking size of fpos_t... 16 checking if malloc debugging is wanted... no checking whether to build with debug information... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating clustalo.pc config.status: creating Doxyfile config.status: creating src/clustal/Makefile config.status: creating src/hhalign/Makefile config.status: creating src/kmpp/Makefile config.status: creating src/squid/Makefile config.status: creating src/config.h config.status: executing src/clustal-omega-config.h commands config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' Making all in src 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-fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mymain.o mymain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -fPIC -DPIC -o .libs/clustal-omega.o clustal-omega.c: In function ‘PrintLongVersion’: clustal-omega.c:152:49: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] PACKAGE_VERSION, PACKAGE_CODENAME, __DATE__); ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -o clustal-omega.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -static -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclustalo.la -rpath /usr/lib/s390x-linux-gnu clustal-omega.lo clustal/libclustal.la hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la -largtable2 -lm libtool: link: (cd .libs/libclustalo.lax/libclustal.a && ar x "/<>/src/clustal/.libs/libclustal.a") libtool: link: (cd .libs/libclustalo.lax/libhhalign.a && ar x "/<>/src/hhalign/.libs/libhhalign.a") libtool: link: (cd .libs/libclustalo.lax/libsquid.a && ar x "/<>/src/squid/.libs/libsquid.a") libtool: link: (cd .libs/libclustalo.lax/libkmpp.a && ar x "/<>/src/kmpp/.libs/libkmpp.a") libtool: link: ar cru .libs/libclustalo.a clustal-omega.o .libs/libclustalo.lax/libclustal.a/hhalign_wrapper.o .libs/libclustalo.lax/libclustal.a/ktuple_pair.o .libs/libclustalo.lax/libclustal.a/list.o .libs/libclustalo.lax/libclustal.a/log.o .libs/libclustalo.lax/libclustal.a/mbed.o .libs/libclustalo.lax/libclustal.a/muscle_tree.o .libs/libclustalo.lax/libclustal.a/muscle_upgma.o .libs/libclustalo.lax/libclustal.a/pair_dist.o .libs/libclustalo.lax/libclustal.a/progress.o .libs/libclustalo.lax/libclustal.a/seq.o .libs/libclustalo.lax/libclustal.a/symmatrix.o .libs/libclustalo.lax/libclustal.a/tree.o .libs/libclustalo.lax/libclustal.a/util.o .libs/libclustalo.lax/libclustal.a/weights.o .libs/libclustalo.lax/libhhalign.a/hhalign.o .libs/libclustalo.lax/libsquid.a/a2m.o .libs/libclustalo.lax/libsquid.a/aligneval.o .libs/libclustalo.lax/libsquid.a/alignio.o .libs/libclustalo.lax/libsquid.a/clustal.o .libs/libclustalo.lax/libsquid.a/cluster.o .libs/libclustalo.lax/libsquid.a/dayhoff.o .libs/libclustalo.lax/libsquid.a/eps.o .libs/libclustalo.lax/libsquid.a/file.o .libs/libclustalo.lax/libsquid.a/getopt.o .libs/libclustalo.lax/libsquid.a/gki.o .libs/libclustalo.lax/libsquid.a/gsi.o .libs/libclustalo.lax/libsquid.a/gsi64.o .libs/libclustalo.lax/libsquid.a/hsregex.o .libs/libclustalo.lax/libsquid.a/iupac.o .libs/libclustalo.lax/libsquid.a/msa.o .libs/libclustalo.lax/libsquid.a/msf.o .libs/libclustalo.lax/libsquid.a/phylip.o .libs/libclustalo.lax/libsquid.a/revcomp.o .libs/libclustalo.lax/libsquid.a/rk.o .libs/libclustalo.lax/libsquid.a/selex.o .libs/libclustalo.lax/libsquid.a/seqencode.o .libs/libclustalo.lax/libsquid.a/shuffle.o .libs/libclustalo.lax/libsquid.a/sqerror.o .libs/libclustalo.lax/libsquid.a/sqio.o .libs/libclustalo.lax/libsquid.a/squidcore.o .libs/libclustalo.lax/libsquid.a/sre_ctype.o .libs/libclustalo.lax/libsquid.a/sre_math.o .libs/libclustalo.lax/libsquid.a/sre_random.o .libs/libclustalo.lax/libsquid.a/sre_string.o .libs/libclustalo.lax/libsquid.a/ssi.o .libs/libclustalo.lax/libsquid.a/stack.o .libs/libclustalo.lax/libsquid.a/stockholm.o .libs/libclustalo.lax/libsquid.a/stopwatch.o .libs/libclustalo.lax/libsquid.a/translate.o .libs/libclustalo.lax/libsquid.a/types.o .libs/libclustalo.lax/libsquid.a/vectorops.o .libs/libclustalo.lax/libsquid.a/weight.o .libs/libclustalo.lax/libkmpp.a/KMeans.o .libs/libclustalo.lax/libkmpp.a/KmTree.o .libs/libclustalo.lax/libkmpp.a/KmUtils.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libclustalo.a libtool: link: rm -fr .libs/libclustalo.lax libtool: link: ( cd ".libs" && rm -f "libclustalo.la" && ln -s "../libclustalo.la" "libclustalo.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o clustalo main.o mymain.o libclustalo.la -largtable2 -lm libtool: link: g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o clustalo main.o mymain.o ./.libs/libclustalo.a /usr/lib/s390x-linux-gnu/libargtable2.so -lm -fopenmp /usr/bin/ld: ./.libs/libclustalo.a(clustal-omega.o): in function `AlnToHHMFile': ./src/clustal-omega.c:393: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' Making check in hhalign make[3]: Entering directory '/<>/src/hhalign' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/hhalign' Making check in squid make[3]: Entering directory '/<>/src/squid' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/squid' Making check in kmpp make[3]: Entering directory '/<>/src/kmpp' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/kmpp' Making check in clustal make[3]: Entering directory '/<>/src/clustal' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/clustal' make[3]: Entering directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with linktree dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' Making install in hhalign make[4]: Entering directory '/<>/src/hhalign' make[5]: Entering directory '/<>/src/hhalign' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/hhalign' /usr/bin/install -c -m 644 general.h hhfunc.h '/<>/debian/tmp/usr/include/clustalo/hhalign' make[5]: Leaving directory '/<>/src/hhalign' make[4]: Leaving directory '/<>/src/hhalign' Making install in squid make[4]: Entering directory '/<>/src/squid' make[5]: Entering directory '/<>/src/squid' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/squid' /usr/bin/install -c -m 644 gki.h gsi64.h msa.h rk.h squid.h stopwatch.h sqfuncs.h sre_random.h ssi.h stockholm.h vectorops.h version.h '/<>/debian/tmp/usr/include/clustalo/squid' make[5]: Leaving directory '/<>/src/squid' make[4]: Leaving directory '/<>/src/squid' Making install in kmpp make[4]: Entering directory '/<>/src/kmpp' make[5]: Entering directory '/<>/src/kmpp' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/kmpp' make[4]: Leaving directory '/<>/src/kmpp' Making install in clustal make[4]: Entering directory '/<>/src/clustal' make[5]: Entering directory '/<>/src/clustal' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/clustal' /usr/bin/install -c -m 644 hhalign_wrapper.h ktuple_pair.h log.h mbed.h muscle_tree.h pair_dist.h progress.h seq.h symmatrix.h tree.h util.h weights.h '/<>/debian/tmp/usr/include/clustalo/clustal' make[5]: Leaving directory '/<>/src/clustal' make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' make[5]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/s390x-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libclustalo.la '/<>/debian/tmp/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclustalo.lai /<>/debian/tmp/usr/lib/s390x-linux-gnu/libclustalo.la libtool: install: /usr/bin/install -c .libs/libclustalo.a /<>/debian/tmp/usr/lib/s390x-linux-gnu/libclustalo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/s390x-linux-gnu/libclustalo.a libtool: install: ranlib /<>/debian/tmp/usr/lib/s390x-linux-gnu/libclustalo.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c clustalo '/<>/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c clustalo /<>/debian/tmp/usr/bin/clustalo /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/' /usr/bin/install -c -m 644 clustal-omega-config.h clustal-omega.h '/<>/debian/tmp/usr/include/clustalo/' make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/clustal-omega' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/clustal-omega' /bin/mkdir -p '/<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clustalo.pc '/<>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' rm -rf debian/tmp/usr/lib/pkgconfig rm -f debian/tmp/usr/lib/*/libclustalo.la mv debian/tmp/usr/include debian/libclustalo-dev/usr mv debian/tmp/usr/lib debian/libclustalo-dev/usr mv debian/tmp/usr/bin debian/clustalo/usr make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_linktree -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libclustalo-dev: unknown substitution variable ${shlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing clustalo (in debian/clustalo); do_strip: , oemstrip: pkgstriptranslations: processing libclustalo-dev (in debian/libclustalo-dev); do_strip: , oemstrip: pkgstriptranslations: processing clustalo-dbgsym (in debian/.debhelper/clustalo/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalo/DEBIAN/control, package clustalo, directory debian/clustalo pkgstripfiles: processing control file: debian/libclustalo-dev/DEBIAN/control, package libclustalo-dev, directory debian/libclustalo-dev INFO: pkgstripfiles: waiting for lock (libclustalo-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalo ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalo' in '../clustalo_1.2.4-2_s390x.deb'. Searching for duplicated docs in dependency clustalo... symlinking changelog.Debian.gz in libclustalo-dev to file in clustalo pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclustalo-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclustalo-dev' in '../libclustalo-dev_1.2.4-2_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clustalo/dbgsym-root/DEBIAN/control, package clustalo-dbgsym, directory debian/.debhelper/clustalo/dbgsym-root dpkg-deb: building package 'clustalo-dbgsym' in 'debian/.debhelper/scratch-space/build-clustalo/clustalo-dbgsym_1.2.4-2_s390x.deb'. Renaming clustalo-dbgsym_1.2.4-2_s390x.deb to clustalo-dbgsym_1.2.4-2_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clustalo_1.2.4-2_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clustalo-1.2.4 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180718-2312 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalo_1.2.4-2_s390x.changes: ------------------------------- Format: 1.8 Date: Wed, 18 Jul 2018 21:11:52 +0200 Source: clustalo Binary: clustalo libclustalo-dev libclustalo-doc Architecture: s390x Version: 1.2.4-2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clustalo - General purpose multiple sequence alignment program for proteins libclustalo-dev - library to embed Clustal Omega libclustalo-doc - API documentation for library to embed Clustal Omega Changes: clustalo (1.2.4-2) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 Checksums-Sha1: b246656ceede356a1fd278dbc23738328a57ef52 795368 clustalo-dbgsym_1.2.4-2_s390x.ddeb 6dd15fa141acaa3dc73749a0eb81bc20d12ab43a 7173 clustalo_1.2.4-2_s390x.buildinfo f8ce4f4bfaec5500e1d60a14b9880325abe78c46 237824 clustalo_1.2.4-2_s390x.deb dde3fb698e5b3d310e33d61d25f9d6984471c86f 289028 libclustalo-dev_1.2.4-2_s390x.deb Checksums-Sha256: 76b87978a8addef73534cbe20f6fbbb10f2c620667dd975903200645cdd51def 795368 clustalo-dbgsym_1.2.4-2_s390x.ddeb a3094791dc185314af3c39e53bcf297d6d7735dc2aa3b3a048de21d988499b60 7173 clustalo_1.2.4-2_s390x.buildinfo 2e0a9e127218c61e154886a455dbc2d7d9c6a69b54ac5c0833493ee890fa4ede 237824 clustalo_1.2.4-2_s390x.deb 0a37c741e7c516e6e1ec17f9a620d33b3180b43144d19f215d15cec55048df53 289028 libclustalo-dev_1.2.4-2_s390x.deb Files: a0e3ae9fd6ee685ac38afd56e6589bb5 795368 debug optional clustalo-dbgsym_1.2.4-2_s390x.ddeb 6bf0902eb1a1133c194b2033addeb140 7173 science optional clustalo_1.2.4-2_s390x.buildinfo 105ec10da154c34eb4ba9d6db7325551 237824 science optional clustalo_1.2.4-2_s390x.deb 1cb5693fcb4a698ef967184c0dfa524d 289028 libdevel optional libclustalo-dev_1.2.4-2_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalo_1.2.4-2_s390x.deb -------------------------- new debian package, version 2.0. size 237824 bytes: control archive=896 bytes. 729 bytes, 15 lines control 406 bytes, 6 lines md5sums Package: clustalo Version: 1.2.4-2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 653 Depends: libargtable2-0 (>= 7), libc6 (>= 2.27), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.clustal.org/omega/ Description: General purpose multiple sequence alignment program for proteins Clustal-Omega is a general purpose multiple sequence alignment (MSA) program for dna/rna/proteins. It produces high quality MSAs and is capable of handling data-sets of hundreds of thousands of sequences in reasonable time. drwxr-xr-x root/root 0 2018-07-18 19:11 ./ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/bin/ -rwxr-xr-x root/root 638272 2018-07-18 19:11 ./usr/bin/clustalo drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/clustalo/ -rw-r--r-- root/root 10994 2013-08-27 12:07 ./usr/share/doc/clustalo/README.gz -rw-r--r-- root/root 893 2018-07-18 19:11 ./usr/share/doc/clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2018-07-18 19:11 ./usr/share/doc/clustalo/copyright drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/clustalo/examples/ -rw-r--r-- root/root 2269 2018-07-18 19:11 ./usr/share/doc/clustalo/examples/example.fa drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/man/man1/ -rw-r--r-- root/root 1083 2018-07-18 19:11 ./usr/share/man/man1/clustalo.1.gz libclustalo-dev_1.2.4-2_s390x.deb --------------------------------- new debian package, version 2.0. size 289028 bytes: control archive=1508 bytes. 584 bytes, 16 lines control 2240 bytes, 31 lines md5sums Package: libclustalo-dev Source: clustalo Version: 1.2.4-2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1308 Depends: libargtable2-dev, clustalo (= 1.2.4-2) Suggests: libclustalo-doc Section: libdevel Priority: optional Homepage: http://www.clustal.org/omega/ Description: library to embed Clustal Omega This package contains headers and libraries to include Clustal Omega in a program. It provides clustal usage with an API. drwxr-xr-x root/root 0 2018-07-18 19:11 ./ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/ -rw-r--r-- root/root 9523 2018-07-18 19:11 ./usr/include/clustalo/clustal-omega-config.h -rw-r--r-- root/root 4740 2018-07-18 19:11 ./usr/include/clustalo/clustal-omega.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/clustal/ -rw-r--r-- root/root 1159 2018-07-18 19:11 ./usr/include/clustalo/clustal/hhalign_wrapper.h -rw-r--r-- root/root 1251 2018-07-18 19:11 ./usr/include/clustalo/clustal/ktuple_pair.h -rw-r--r-- root/root 1787 2018-07-18 19:11 ./usr/include/clustalo/clustal/log.h -rw-r--r-- root/root 866 2018-07-18 19:11 ./usr/include/clustalo/clustal/mbed.h -rw-r--r-- root/root 4112 2018-07-18 19:11 ./usr/include/clustalo/clustal/muscle_tree.h -rw-r--r-- root/root 1303 2018-07-18 19:11 ./usr/include/clustalo/clustal/pair_dist.h -rw-r--r-- root/root 1257 2018-07-18 19:11 ./usr/include/clustalo/clustal/progress.h -rw-r--r-- root/root 4032 2018-07-18 19:11 ./usr/include/clustalo/clustal/seq.h -rw-r--r-- root/root 2310 2018-07-18 19:11 ./usr/include/clustalo/clustal/symmatrix.h -rw-r--r-- root/root 1066 2018-07-18 19:11 ./usr/include/clustalo/clustal/tree.h -rw-r--r-- root/root 2308 2018-07-18 19:11 ./usr/include/clustalo/clustal/util.h -rw-r--r-- root/root 741 2018-07-18 19:11 ./usr/include/clustalo/clustal/weights.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/hhalign/ -rw-r--r-- root/root 2961 2018-07-18 19:11 ./usr/include/clustalo/hhalign/general.h -rw-r--r-- root/root 859 2018-07-18 19:11 ./usr/include/clustalo/hhalign/hhfunc.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/include/clustalo/squid/ -rw-r--r-- root/root 1381 2018-07-18 19:11 ./usr/include/clustalo/squid/gki.h -rw-r--r-- root/root 3473 2018-07-18 19:11 ./usr/include/clustalo/squid/gsi64.h -rw-r--r-- root/root 13442 2018-07-18 19:11 ./usr/include/clustalo/squid/msa.h -rw-r--r-- root/root 1264 2018-07-18 19:11 ./usr/include/clustalo/squid/rk.h -rw-r--r-- root/root 10390 2018-07-18 19:11 ./usr/include/clustalo/squid/sqfuncs.h -rw-r--r-- root/root 19594 2018-07-18 19:11 ./usr/include/clustalo/squid/squid.h -rw-r--r-- root/root 489 2018-07-18 19:11 ./usr/include/clustalo/squid/sre_random.h -rw-r--r-- root/root 7610 2018-07-18 19:11 ./usr/include/clustalo/squid/ssi.h -rw-r--r-- root/root 1868 2018-07-18 19:11 ./usr/include/clustalo/squid/stockholm.h -rw-r--r-- root/root 1937 2018-07-18 19:11 ./usr/include/clustalo/squid/stopwatch.h -rw-r--r-- root/root 1434 2018-07-18 19:11 ./usr/include/clustalo/squid/vectorops.h -rw-r--r-- root/root 333 2018-07-18 19:11 ./usr/include/clustalo/squid/version.h drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 1201040 2018-07-18 19:11 ./usr/lib/s390x-linux-gnu/libclustalo.a drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 246 2018-07-18 19:11 ./usr/lib/s390x-linux-gnu/pkgconfig/clustalo.pc drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 19:11 ./usr/share/doc/libclustalo-dev/ lrwxrwxrwx root/root 0 2018-07-18 19:11 ./usr/share/doc/libclustalo-dev/changelog.Debian.gz -> ../clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2018-07-18 19:11 ./usr/share/doc/libclustalo-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 41460 Build-Time: 50 Distribution: cosmic-proposed Host Architecture: s390x Install-Time: 16 Job: clustalo_1.2.4-2.dsc Machine Architecture: s390x Package: clustalo Package-Time: 66 Source-Version: 1.2.4-2 Space: 41460 Status: successful Version: 1.2.4-2 -------------------------------------------------------------------------------- Finished at 20180718-2312 Build needed 00:01:06, 41460k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=s390x PACKAGEBUILD-15144866 Scanning for processes to kill in build PACKAGEBUILD-15144866