RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 2.6.32-40-powerpc64-smp #87-Ubuntu SMP Tue Mar 6 13:11:42 UTC 2012 ppc64 Buildd toolchain package versions: launchpad-buildd_113~0.IS.08.04 python-lpbuildd_113~0.IS.08.04 bzr_2.4.0-0ubuntu2~9.IS.10.04.3. Syncing the system clock with the buildd NTP service... 6 May 00:50:51 ntpdate[13225]: adjust time server 10.211.37.1 offset 0.000030 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'bc28bfebc630d79766b30a0a360c1d7200149038', '/home/buildd/filecache-default/7136f9948beaa5718cf46929a6855f2e720cee12'] Unpacking chroot for build bc28bfebc630d79766b30a0a360c1d7200149038 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'bc28bfebc630d79766b30a0a360c1d7200149038'] Mounting chroot for build bc28bfebc630d79766b30a0a360c1d7200149038 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'bc28bfebc630d79766b30a0a360c1d7200149038', 'deb http://ftpmaster.internal/ubuntu quantal main restricted universe multiverse'] Overriding sources.list in build-bc28bfebc630d79766b30a0a360c1d7200149038 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'bc28bfebc630d79766b30a0a360c1d7200149038', 'powerpc'] Updating debian chroot for build bc28bfebc630d79766b30a0a360c1d7200149038 Ign http://ftpmaster.internal quantal InRelease Get:1 http://ftpmaster.internal quantal Release.gpg [198 B] Get:2 http://ftpmaster.internal quantal Release [49.6 kB] Get:3 http://ftpmaster.internal quantal/main powerpc Packages [1291 kB] Get:4 http://ftpmaster.internal quantal/restricted powerpc Packages [14 B] Get:5 http://ftpmaster.internal quantal/universe powerpc Packages [4861 kB] Get:6 http://ftpmaster.internal quantal/multiverse powerpc Packages [109 kB] Get:7 http://ftpmaster.internal quantal/main TranslationIndex [74 B] Get:8 http://ftpmaster.internal quantal/multiverse TranslationIndex [73 B] Get:9 http://ftpmaster.internal quantal/restricted TranslationIndex [72 B] Get:10 http://ftpmaster.internal quantal/universe TranslationIndex [75 B] Get:11 http://ftpmaster.internal quantal/main Translation-en [740 kB] Get:12 http://ftpmaster.internal quantal/multiverse Translation-en [95.4 kB] Get:13 http://ftpmaster.internal quantal/restricted Translation-en [2395 B] Get:14 http://ftpmaster.internal quantal/universe Translation-en [3453 kB] Fetched 10.6 MB in 6s (1686 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libkms1 The following packages will be upgraded: coreutils cpp-4.7 fakeroot g++-4.7 gcc-4.7 gcc-4.7-base ifupdown libc-bin libc-dev-bin libc6 libc6-dev libgcc1 libglib2.0-0 libgomp1 libgpg-error0 libplymouth2 libselinux1 libslang2 libssl1.0.0 libstdc++6 libstdc++6-4.7-dev libtasn1-3 linux-libc-dev makedev multiarch-support openssl plymouth upstart 28 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 33.6 MB of archives. After this operation, 894 kB disk space will be freed. WARNING: The following packages cannot be authenticated! coreutils ifupdown upstart libc6-dev libc-dev-bin linux-libc-dev libgomp1 gcc-4.7-base libgcc1 cpp-4.7 libstdc++6-4.7-dev g++-4.7 gcc-4.7 libstdc++6 libc-bin libc6 libselinux1 libslang2 libssl1.0.0 libglib2.0-0 libgpg-error0 libtasn1-3 libkms1 multiarch-support plymouth libplymouth2 makedev openssl fakeroot Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main coreutils powerpc 8.13-3.1ubuntu1 [2183 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main ifupdown powerpc 0.7~rc2+experimentalubuntu1 [49.2 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main upstart powerpc 1.5-0ubuntu7 [279 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main libc6-dev powerpc 2.15-0ubuntu11 [2652 kB] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main libc-dev-bin powerpc 2.15-0ubuntu11 [79.2 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main linux-libc-dev powerpc 3.4.0-1.3 [834 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main libgomp1 powerpc 4.7.0-7ubuntu3 [29.2 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main gcc-4.7-base powerpc 4.7.0-7ubuntu3 [15.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main libgcc1 powerpc 1:4.7.0-7ubuntu3 [42.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main cpp-4.7 powerpc 4.7.0-7ubuntu3 [4979 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main libstdc++6-4.7-dev powerpc 4.7.0-7ubuntu3 [1736 kB] Get:12 http://ftpmaster.internal/ubuntu/ quantal/main g++-4.7 powerpc 4.7.0-7ubuntu3 [5383 kB] Get:13 http://ftpmaster.internal/ubuntu/ quantal/main gcc-4.7 powerpc 4.7.0-7ubuntu3 [5846 kB] Get:14 http://ftpmaster.internal/ubuntu/ quantal/main libstdc++6 powerpc 4.7.0-7ubuntu3 [388 kB] Get:15 http://ftpmaster.internal/ubuntu/ quantal/main libc-bin powerpc 2.15-0ubuntu11 [1276 kB] Get:16 http://ftpmaster.internal/ubuntu/ quantal/main libc6 powerpc 2.15-0ubuntu11 [4263 kB] Get:17 http://ftpmaster.internal/ubuntu/ quantal/main libselinux1 powerpc 2.1.9-4ubuntu1 [61.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ quantal/main libslang2 powerpc 2.2.4-10ubuntu1 [492 kB] Get:19 http://ftpmaster.internal/ubuntu/ quantal/main libssl1.0.0 powerpc 1.0.1-4ubuntu5 [954 kB] Get:20 http://ftpmaster.internal/ubuntu/ quantal/main libglib2.0-0 powerpc 2.32.2-1 [1173 kB] Get:21 http://ftpmaster.internal/ubuntu/ quantal/main libgpg-error0 powerpc 1.10-3 [14.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ quantal/main libtasn1-3 powerpc 2.12-1 [43.3 kB] Get:23 http://ftpmaster.internal/ubuntu/ quantal/main libkms1 powerpc 2.4.32-1ubuntu1 [8936 B] Get:24 http://ftpmaster.internal/ubuntu/ quantal/main multiarch-support powerpc 2.15-0ubuntu11 [4478 B] Get:25 http://ftpmaster.internal/ubuntu/ quantal/main plymouth powerpc 0.8.4-0ubuntu1 [118 kB] Get:26 http://ftpmaster.internal/ubuntu/ quantal/main libplymouth2 powerpc 0.8.4-0ubuntu1 [93.8 kB] Get:27 http://ftpmaster.internal/ubuntu/ quantal/main makedev all 2.3.1-91ubuntu1 [27.8 kB] Get:28 http://ftpmaster.internal/ubuntu/ quantal/main openssl powerpc 1.0.1-4ubuntu5 [522 kB] Get:29 http://ftpmaster.internal/ubuntu/ quantal/main fakeroot powerpc 1.18.3-1 [85.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.6 MB in 2s (12.8 MB/s) (Reading database ... 12189 files and directories currently installed.) Preparing to replace coreutils 8.13-3ubuntu3 (using .../coreutils_8.13-3.1ubuntu1_powerpc.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.13-3.1ubuntu1) ... (Reading database ... 12189 files and directories currently installed.) Preparing to replace ifupdown 0.7~beta2ubuntu8 (using .../ifupdown_0.7~rc2+experimentalubuntu1_powerpc.deb) ... Unpacking replacement ifupdown ... Preparing to replace upstart 1.5-0ubuntu5 (using .../upstart_1.5-0ubuntu7_powerpc.deb) ... Unpacking replacement upstart ... Preparing to replace libc6-dev 2.15-0ubuntu10 (using .../libc6-dev_2.15-0ubuntu11_powerpc.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-dev-bin 2.15-0ubuntu10 (using .../libc-dev-bin_2.15-0ubuntu11_powerpc.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace linux-libc-dev 3.2.0-24.37 (using .../linux-libc-dev_3.4.0-1.3_powerpc.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.7.0-5ubuntu1 (using .../libgomp1_4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.7-base 4.7.0-5ubuntu1 (using .../gcc-4.7-base_4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement gcc-4.7-base ... Setting up gcc-4.7-base (4.7.0-7ubuntu3) ... (Reading database ... 12207 files and directories currently installed.) Preparing to replace libgcc1 1:4.7.0-5ubuntu1 (using .../libgcc1_1%3a4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.7.0-7ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12207 files and directories currently installed.) Preparing to replace cpp-4.7 4.7.0-5ubuntu1 (using .../cpp-4.7_4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement cpp-4.7 ... Preparing to replace libstdc++6-4.7-dev 4.7.0-5ubuntu1 (using .../libstdc++6-4.7-dev_4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement libstdc++6-4.7-dev ... Preparing to replace g++-4.7 4.7.0-5ubuntu1 (using .../g++-4.7_4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement g++-4.7 ... Preparing to replace gcc-4.7 4.7.0-5ubuntu1 (using .../gcc-4.7_4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement gcc-4.7 ... Preparing to replace libstdc++6 4.7.0-5ubuntu1 (using .../libstdc++6_4.7.0-7ubuntu3_powerpc.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.7.0-7ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12207 files and directories currently installed.) Preparing to replace libc-bin 2.15-0ubuntu10 (using .../libc-bin_2.15-0ubuntu11_powerpc.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.15-0ubuntu11) ... (Reading database ... 12207 files and directories currently installed.) Preparing to replace libc6 2.15-0ubuntu10 (using .../libc6_2.15-0ubuntu11_powerpc.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.15-0ubuntu11) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12207 files and directories currently installed.) Preparing to replace libselinux1 2.1.0-4.1ubuntu1 (using .../libselinux1_2.1.9-4ubuntu1_powerpc.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.1.9-4ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12207 files and directories currently installed.) Preparing to replace libslang2 2.2.4-3ubuntu1 (using .../libslang2_2.2.4-10ubuntu1_powerpc.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.2.4-10ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12205 files and directories currently installed.) Preparing to replace libssl1.0.0 1.0.1-4ubuntu3 (using .../libssl1.0.0_1.0.1-4ubuntu5_powerpc.deb) ... Unpacking replacement libssl1.0.0 ... Setting up libssl1.0.0 (1.0.1-4ubuntu5) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 12205 files and directories currently installed.) Preparing to replace libglib2.0-0 2.32.1-0ubuntu2 (using .../libglib2.0-0_2.32.2-1_powerpc.deb) ... Unpacking replacement libglib2.0-0 ... Preparing to replace libgpg-error0 1.10-2ubuntu1 (using .../libgpg-error0_1.10-3_powerpc.deb) ... Unpacking replacement libgpg-error0 ... Preparing to replace libtasn1-3 2.10-1ubuntu1 (using .../libtasn1-3_2.12-1_powerpc.deb) ... Unpacking replacement libtasn1-3 ... Selecting previously unselected package libkms1. Unpacking libkms1 (from .../libkms1_2.4.32-1ubuntu1_powerpc.deb) ... Preparing to replace multiarch-support 2.15-0ubuntu10 (using .../multiarch-support_2.15-0ubuntu11_powerpc.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.15-0ubuntu11) ... (Reading database ... 12212 files and directories currently installed.) Preparing to replace plymouth 0.8.2-2ubuntu30 (using .../plymouth_0.8.4-0ubuntu1_powerpc.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2 0.8.2-2ubuntu30 (using .../libplymouth2_0.8.4-0ubuntu1_powerpc.deb) ... Unpacking replacement libplymouth2 ... Preparing to replace makedev 2.3.1-89ubuntu2 (using .../makedev_2.3.1-91ubuntu1_all.deb) ... Unpacking replacement makedev ... Preparing to replace openssl 1.0.1-4ubuntu3 (using .../openssl_1.0.1-4ubuntu5_powerpc.deb) ... Unpacking replacement openssl ... Preparing to replace fakeroot 1.18.2-1 (using .../fakeroot_1.18.3-1_powerpc.deb) ... Unpacking replacement fakeroot ... Setting up libc-dev-bin (2.15-0ubuntu11) ... Setting up linux-libc-dev (3.4.0-1.3) ... Setting up libc6-dev (2.15-0ubuntu11) ... Setting up libgomp1 (4.7.0-7ubuntu3) ... Setting up cpp-4.7 (4.7.0-7ubuntu3) ... Setting up gcc-4.7 (4.7.0-7ubuntu3) ... Setting up libglib2.0-0 (2.32.2-1) ... No schema files found: doing nothing. Setting up libgpg-error0 (1.10-3) ... Setting up libtasn1-3 (2.12-1) ... Setting up libkms1 (2.4.32-1ubuntu1) ... Setting up libplymouth2 (0.8.4-0ubuntu1) ... Setting up makedev (2.3.1-91ubuntu1) ... Setting up openssl (1.0.1-4ubuntu5) ... Setting up fakeroot (1.18.3-1) ... Setting up g++-4.7 (4.7.0-7ubuntu3) ... Setting up upstart (1.5-0ubuntu7) ... Installing new version of config file /etc/logrotate.d/upstart ... Setting up libstdc++6-4.7-dev (4.7.0-7ubuntu3) ... Setting up plymouth (0.8.4-0ubuntu1) ... update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7~rc2+experimentalubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'bc28bfebc630d79766b30a0a360c1d7200149038', 'powerpc', 'quantal', '--nolog', '--batch', '--archive=ubuntu', '--dist=quantal', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=multiverse', 'clustalw-mpi_0.15-2.dsc'] Initiating build bc28bfebc630d79766b30a0a360c1d7200149038 with 4 jobs across 4 processor cores. Automatic build of clustalw-mpi_0.15-2 on sulfur by sbuild/powerpc 1.170.5 Build started at 20120506-0052 ****************************************************************************** clustalw-mpi_0.15-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), mpi-default-dev Checking for already installed source dependencies... debhelper: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libibverbs-dev libibverbs1 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libtorque2 libunistring0 libxml2 man-db openmpi-common po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base html2text intltool-debian libcroco3 libgettextpo0 libibverbs-dev libibverbs1 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libtorque2 libunistring0 libxml2 man-db mpi-default-dev openmpi-common po-debconf 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. Need to get 9761 kB of archives. After this operation, 33.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libmagic1 libpipeline1 libxml2 libcroco3 libunistring0 libgettextpo0 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf dh-apparmor debhelper libnuma1 libtorque2 openmpi-common libibverbs1 libibverbs-dev libopenmpi1.3 libopenmpi-dev mpi-default-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ quantal/main libmagic1 powerpc 5.11-1 [224 kB] Get:2 http://ftpmaster.internal/ubuntu/ quantal/main libpipeline1 powerpc 1.2.1-1 [26.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ quantal/main libxml2 powerpc 2.7.8.dfsg-5.1ubuntu4 [619 kB] Get:4 http://ftpmaster.internal/ubuntu/ quantal/main libcroco3 powerpc 0.6.5-1 [91.4 kB] Get:5 http://ftpmaster.internal/ubuntu/ quantal/main libunistring0 powerpc 0.9.3-5 [409 kB] Get:6 http://ftpmaster.internal/ubuntu/ quantal/main libgettextpo0 powerpc 0.18.1.1-5ubuntu3 [113 kB] Get:7 http://ftpmaster.internal/ubuntu/ quantal/main file powerpc 5.11-1 [19.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ quantal/main bsdmainutils powerpc 8.2.3ubuntu1 [197 kB] Get:9 http://ftpmaster.internal/ubuntu/ quantal/main gettext-base powerpc 0.18.1.1-5ubuntu3 [57.1 kB] Get:10 http://ftpmaster.internal/ubuntu/ quantal/main groff-base powerpc 1.21-7 [1043 kB] Get:11 http://ftpmaster.internal/ubuntu/ quantal/main man-db powerpc 2.6.1-2 [747 kB] Get:12 http://ftpmaster.internal/ubuntu/ quantal/main html2text powerpc 1.3.2a-15 [106 kB] Get:13 http://ftpmaster.internal/ubuntu/ quantal/main gettext powerpc 0.18.1.1-5ubuntu3 [1131 kB] Get:14 http://ftpmaster.internal/ubuntu/ quantal/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ quantal/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:16 http://ftpmaster.internal/ubuntu/ quantal/main dh-apparmor all 2.7.102-0ubuntu3 [9622 B] Get:17 http://ftpmaster.internal/ubuntu/ quantal/main debhelper all 9.20120419ubuntu2 [609 kB] Get:18 http://ftpmaster.internal/ubuntu/ quantal/main libnuma1 powerpc 2.0.8~rc3-1 [21.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ quantal/universe libtorque2 powerpc 2.4.16+dfsg-1build1 [88.9 kB] Get:20 http://ftpmaster.internal/ubuntu/ quantal/universe openmpi-common all 1.4.3-2.1ubuntu3 [84.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ quantal/main libibverbs1 powerpc 1.1.5-1ubuntu1 [26.5 kB] Get:22 http://ftpmaster.internal/ubuntu/ quantal/main libibverbs-dev powerpc 1.1.5-1ubuntu1 [75.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ quantal/universe libopenmpi1.3 powerpc 1.4.3-2.1ubuntu3 [1255 kB] Get:24 http://ftpmaster.internal/ubuntu/ quantal/universe libopenmpi-dev powerpc 1.4.3-2.1ubuntu3 [2561 kB] Get:25 http://ftpmaster.internal/ubuntu/ quantal/universe mpi-default-dev powerpc 1.0.1 [3648 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 9761 kB in 0s (12.2 MB/s) Selecting previously unselected package libmagic1. (Reading database ... 12212 files and directories currently installed.) Unpacking libmagic1 (from .../libmagic1_5.11-1_powerpc.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.1-1_powerpc.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5.1ubuntu4_powerpc.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.5-1_powerpc.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-5_powerpc.deb) ... Selecting previously unselected package libgettextpo0. Unpacking libgettextpo0 (from .../libgettextpo0_0.18.1.1-5ubuntu3_powerpc.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.11-1_powerpc.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3ubuntu1_powerpc.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu3_powerpc.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-7_powerpc.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.1-2_powerpc.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu3_powerpc.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.7.102-0ubuntu3_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20120419ubuntu2_all.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.8~rc3-1_powerpc.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1build1_powerpc.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.3-2.1ubuntu3_all.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.5-1ubuntu1_powerpc.deb) ... Selecting previously unselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.5-1ubuntu1_powerpc.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-2.1ubuntu3_powerpc.deb) ... Selecting previously unselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-2.1ubuntu3_powerpc.deb) ... Selecting previously unselected package mpi-default-dev. Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_powerpc.deb) ... Setting up libmagic1 (5.11-1) ... Setting up libpipeline1 (1.2.1-1) ... Setting up libxml2 (2.7.8.dfsg-5.1ubuntu4) ... Setting up libcroco3 (0.6.5-1) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up file (5.11-1) ... Setting up bsdmainutils (8.2.3ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-7) ... Setting up man-db (2.6.1-2) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.7.102-0ubuntu3) ... Setting up debhelper (9.20120419ubuntu2) ... Setting up libnuma1 (2.0.8~rc3-1) ... Setting up libtorque2 (2.4.16+dfsg-1build1) ... Setting up openmpi-common (1.4.3-2.1ubuntu3) ... Setting up libibverbs1 (1.1.5-1ubuntu1) ... Setting up libibverbs-dev (1.1.5-1ubuntu1) ... Setting up libopenmpi1.3 (1.4.3-2.1ubuntu3) ... Setting up libopenmpi-dev (1.4.3-2.1ubuntu3) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode. Setting up mpi-default-dev (1.0.1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.15-0ubuntu11 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu8 gcc-4.7_4.7.0-7ubuntu3 g++-4.7_4.7.0-7ubuntu3 binutils_2.22-6ubuntu1 libstdc++6-4.7-dev_4.7.0-7ubuntu3 libstdc++6_4.7.0-7ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Thu Mar 1 11:20:01 2012 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-2.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-2.debian.tar.gz dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-2 dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' /bin/rm -f *.o make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules build dh build dh_testdir dh_auto_configure dh_auto_build make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c mpicc -c -g sequence.c mpicc -c -g showpair.c mpicc -c -g malign.c mpicc -c -g malign_mpi_progressive.c mpicc -c -g malign_mpi_pdiff.c mpicc -c -g util.c mpicc -DSERIAL_NJTREE -c -g trees.c mpicc -c -g gcgcheck.c mpicc -c -g prfalign_mpi_pdiff.c mpicc -c -g prfalign_mpi_progressive.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g pairalign_new.c mpicc -c -g calcgapcoeff.c mpicc -c -g calcprf1.c mpicc -c -g calcprf2.c mpicc -c -g calctree.c mpicc -c -g readmat.c mpicc -c -g alnscore.c mpicc -c -g random.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g parallel_compare.c mpicc -c -g prfalign.c mpicc -c -g stupid.c mpicc -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' dh_auto_test /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: dpkg-deb: building package `clustalw-mpi-dbgsym' in `../clustalw-mpi-dbgsym_0.15-2_powerpc.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 116 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: PNG optimization for package clustalw-mpi took 0 s dpkg-deb: warning: 'debian/clustalw-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-mpi' in `../clustalw-mpi_0.15-2_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../clustalw-mpi_0.15-2_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20120506-0053 Publishing debug debs. chroot-autobuild/build/buildd/clustalw-mpi_0.15-2_powerpc.deb: new debian package, version 2.0. size 131808 bytes: control archive= 1357 bytes. 1778 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-2 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 461 Depends: libc6 (>= 2.7), libopenmpi1.3 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ chroot-autobuild/build/buildd/clustalw-mpi_0.15-2_powerpc.deb: drwxr-xr-x root/root 0 2012-05-06 00:53 ./ drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/ drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/share/ drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/share/man/ drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/share/man/man1/ -rw-r--r-- root/root 593 2012-05-06 00:53 ./usr/share/man/man1/clustalw-mpi.1.gz drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/share/doc/clustalw-mpi/ -rw-r--r-- root/root 1994 2008-05-23 07:36 ./usr/share/doc/clustalw-mpi/History -rw-r--r-- root/root 1891 2012-03-01 10:40 ./usr/share/doc/clustalw-mpi/copyright drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 3834 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz -rw-r--r-- root/root 12960 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 2602 2008-05-23 07:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1694 2012-03-01 11:18 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz drwxr-xr-x root/root 0 2012-05-06 00:53 ./usr/bin/ -rwxr-xr-x root/root 405332 2012-05-06 00:53 ./usr/bin/clustalw-mpi clustalw-mpi_0.15-2_powerpc.changes: Format: 1.8 Date: Thu, 01 Mar 2012 12:16:54 +0100 Source: clustalw-mpi Binary: clustalw-mpi Architecture: powerpc Version: 0.15-2 Distribution: quantal Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Andreas Tille Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Closes: 661740 Changes: clustalw-mpi (0.15-2) unstable; urgency=low . * debian/control: - Fixed Vcs-Fields - Updated Standards-Version to 3.9.3 (no changes needed) - Homepage has changed - Build-Depends: mpi-default-dev Closes: #661740 - Depends ${misc:Depends} - Dropped Build-Depends: cdbs * debian/source/format: 3.0 (quilt) * Debhelper compat level 8 (control+compat) * debian/copyright: Fixed DEP5 issues using cme fix dpkg-copyright * deleted debian/README.Debian because there is no point in just using different words for a package beeing in non-free as it is just said in debian/copyright * debian/watch: Deleted because not working * debian/rules: - Delete get-orig-source target because not working any more because source vanished - Rewritten using dh * debian/upstream: bibliographic information * debian/README.source: document missing source code for current version Checksums-Sha1: 4955acdc02204b3613e4c48a28c57355f5716dac 131808 clustalw-mpi_0.15-2_powerpc.deb Checksums-Sha256: a7afaaebffdeb0bea63f8765c16295ceef05886088e938294b7cfa7d60c95440 131808 clustalw-mpi_0.15-2_powerpc.deb Files: ef7375b859a37ec7871aa254ba20e20f 131808 non-free/science optional clustalw-mpi_0.15-2_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20120506-0053 Build needed 00:00:18, 3196k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'bc28bfebc630d79766b30a0a360c1d7200149038'] Scanning for processes to kill in build /srv/home/buildd/build-bc28bfebc630d79766b30a0a360c1d7200149038/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'bc28bfebc630d79766b30a0a360c1d7200149038'] Unmounting chroot for build bc28bfebc630d79766b30a0a360c1d7200149038... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'bc28bfebc630d79766b30a0a360c1d7200149038'] Removing build bc28bfebc630d79766b30a0a360c1d7200149038