RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux magic 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Buildd toolchain package versions: launchpad-buildd_119~APM.12.04.2 python-lpbuildd_119~APM.12.04.2. Syncing the system clock with the buildd NTP service... 13 Oct 10:39:35 ntpdate[4796]: adjust time server 10.211.37.1 offset -0.000627 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-4974782', '/home/buildd/filecache-default/44f33cdeb3bba2d264fe6adff2cf174984095440'] Unpacking chroot for build PACKAGEBUILD-4974782 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-4974782'] Mounting chroot for build PACKAGEBUILD-4974782 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-4974782', 'deb http://ftpmaster.internal/ubuntu saucy main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-4974782 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-4974782', 'arm64'] Updating debian chroot for build PACKAGEBUILD-4974782 Ign http://ftpmaster.internal saucy InRelease Ign http://archive-team.internal saucy InRelease Ign http://ftpmaster.internal saucy-security InRelease Ign http://archive-team.internal saucy Release.gpg Ign http://ftpmaster.internal saucy-updates InRelease Get:1 http://archive-team.internal saucy Release [737 B] Ign http://ftpmaster.internal saucy-proposed InRelease Ign http://archive-team.internal saucy/main arm64 Packages/DiffIndex Get:2 http://ftpmaster.internal saucy Release.gpg [933 B] Get:3 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:4 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal saucy-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal saucy Release [49.6 kB] Ign http://archive-team.internal saucy/main Translation-en Get:7 http://ftpmaster.internal saucy-security Release [49.6 kB] Get:8 http://archive-team.internal saucy/main arm64 Packages [4049 B] Get:9 http://ftpmaster.internal saucy-updates Release [49.6 kB] Get:10 http://ftpmaster.internal saucy-proposed Release [49.6 kB] Get:11 http://ftpmaster.internal saucy/main arm64 Packages [1052 kB] Get:12 http://ftpmaster.internal saucy/restricted arm64 Packages [14 B] Get:13 http://ftpmaster.internal saucy/universe arm64 Packages [2817 kB] Get:14 http://ftpmaster.internal saucy/multiverse arm64 Packages [70.5 kB] Hit http://ftpmaster.internal saucy/main Translation-en Get:15 http://ftpmaster.internal saucy/multiverse Translation-en [101 kB] Get:16 http://ftpmaster.internal saucy/restricted Translation-en [2925 B] Get:17 http://ftpmaster.internal saucy/universe Translation-en [3885 kB] Get:18 http://ftpmaster.internal saucy-security/main arm64 Packages [14 B] Get:19 http://ftpmaster.internal saucy-security/restricted arm64 Packages [14 B] Get:20 http://ftpmaster.internal saucy-security/universe arm64 Packages [14 B] Get:21 http://ftpmaster.internal saucy-security/multiverse arm64 Packages [14 B] Get:22 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:23 http://ftpmaster.internal saucy-security/multiverse Translation-en [14 B] Get:24 http://ftpmaster.internal saucy-security/restricted Translation-en [14 B] Get:25 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:26 http://ftpmaster.internal saucy-updates/main arm64 Packages [14 B] Get:27 http://ftpmaster.internal saucy-updates/restricted arm64 Packages [14 B] Get:28 http://ftpmaster.internal saucy-updates/universe arm64 Packages [14 B] Get:29 http://ftpmaster.internal saucy-updates/multiverse arm64 Packages [14 B] Get:30 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:31 http://ftpmaster.internal saucy-updates/multiverse Translation-en [14 B] Get:32 http://ftpmaster.internal saucy-updates/restricted Translation-en [14 B] Get:33 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Get:34 http://ftpmaster.internal saucy-proposed/main arm64 Packages [3497 B] Get:35 http://ftpmaster.internal saucy-proposed/restricted arm64 Packages [14 B] Get:36 http://ftpmaster.internal saucy-proposed/universe arm64 Packages [19.0 kB] Get:37 http://ftpmaster.internal saucy-proposed/multiverse arm64 Packages [14 B] Get:38 http://ftpmaster.internal saucy-proposed/main Translation-en [2615 B] Get:39 http://ftpmaster.internal saucy-proposed/multiverse Translation-en [14 B] Get:40 http://ftpmaster.internal saucy-proposed/restricted Translation-en [14 B] Get:41 http://ftpmaster.internal saucy-proposed/universe Translation-en [27.7 kB] Fetched 8187 kB in 17s (462 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-4974782', 'arm64', 'saucy-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=multiverse', 'clustalw-mpi_0.15-3.dsc'] Initiating build PACKAGEBUILD-4974782 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Automatic build of clustalw-mpi_0.15-3 on magic by sbuild/arm64 1.170.5 Build started at 20131013-1040 ****************************************************************************** clustalw-mpi_0.15-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), mpi-default-dev Checking for already installed source dependencies... debhelper: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libmagic1 libmpich2-3 libmpich2-dev libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libglib2.0-data shared-mime-info mpich2 xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libmagic1 libmpich2-3 libmpich2-dev libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support mpi-default-dev po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 49.6 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libssl1.0.0 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 libgettextpo0 python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libmpich2-3 libmpich2-dev mpi-default-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 arm64 2.1.0-4 [114 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 arm64 3.0.13-4 [19.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 arm64 5.11-2ubuntu4 [163 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libssl1.0.0 arm64 1.0.1e-3ubuntu1 [860 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal arm64 3.3.2-7ubuntu3 [609 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib arm64 3.3.2-7ubuntu3 [2568 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal arm64 3.3.2-7ubuntu3 [1431 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 arm64 0.18.1.1-10ubuntu3 [6816 B] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 arm64 2.38.0-1ubuntu1 [824 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 arm64 1.2.4-1 [24.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 arm64 2.9.1+dfsg1-3ubuntu2 [588 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main groff-base arm64 1.22.2-3 [688 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main man-db arm64 2.6.5-2 [678 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 arm64 0.6.8-2 [64.9 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 arm64 0.9.3-5ubuntu1 [403 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 arm64 0.18.1.1-10ubuntu3 [106 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 arm64 3.3.2-7ubuntu3 [129 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal arm64 3.3.2-14ubuntu1 [26.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib arm64 3.3.2-14ubuntu1 [8144 B] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main python3 arm64 3.3.2-14ubuntu1 [9144 B] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main dh-python all 1.20131003-1 [61.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main file arm64 5.11-2ubuntu4 [18.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base arm64 0.18.1.1-10ubuntu3 [54.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev arm64 0.18.1.1-10ubuntu3 [4586 B] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev arm64 0.18.1.1-10ubuntu3 [147 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main gettext arm64 0.18.1.1-10ubuntu3 [994 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof all 2.8.0-0ubuntu31 [23.8 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu31 [7720 B] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/universe libmpich2-3 arm64 1.4.1-4.2ubuntu2 [701 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/universe libmpich2-dev arm64 1.4.1-4.2ubuntu2 [1075 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/universe mpi-default-dev arm64 1.0.1 [3648 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 15s (862 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11933 files and directories currently installed.) Unpacking libexpat1:arm64 (from .../libexpat1_2.1.0-4_arm64.deb) ... Selecting previously unselected package libffi6:arm64. Unpacking libffi6:arm64 (from .../libffi6_3.0.13-4_arm64.deb) ... Selecting previously unselected package libmagic1:arm64. Unpacking libmagic1:arm64 (from .../libmagic1_5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package libssl1.0.0:arm64. Unpacking libssl1.0.0:arm64 (from .../libssl1.0.0_1.0.1e-3ubuntu1_arm64.deb) ... Selecting previously unselected package libpython3.3-minimal:arm64. Unpacking libpython3.3-minimal:arm64 (from .../libpython3.3-minimal_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:arm64. Unpacking libpython3.3-stdlib:arm64 (from .../libpython3.3-stdlib_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package libasprintf0c2:arm64. Unpacking libasprintf0c2:arm64 (from .../libasprintf0c2_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package libglib2.0-0:arm64. Unpacking libglib2.0-0:arm64 (from .../libglib2.0-0_2.38.0-1ubuntu1_arm64.deb) ... Selecting previously unselected package libpipeline1:arm64. Unpacking libpipeline1:arm64 (from .../libpipeline1_1.2.4-1_arm64.deb) ... Selecting previously unselected package libxml2:arm64. Unpacking libxml2:arm64 (from .../libxml2_2.9.1+dfsg1-3ubuntu2_arm64.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_arm64.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_arm64.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_arm64.deb) ... Selecting previously unselected package libcroco3:arm64. Unpacking libcroco3:arm64 (from .../libcroco3_0.6.8-2_arm64.deb) ... Selecting previously unselected package libunistring0:arm64. Unpacking libunistring0:arm64 (from .../libunistring0_0.9.3-5ubuntu1_arm64.deb) ... Selecting previously unselected package libgettextpo0:arm64. Unpacking libgettextpo0:arm64 (from .../libgettextpo0_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package python3.3. Unpacking python3.3 (from .../python3.3_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package python3-minimal. Unpacking python3-minimal (from .../python3-minimal_3.3.2-14ubuntu1_arm64.deb) ... Selecting previously unselected package libpython3-stdlib:arm64. Unpacking libpython3-stdlib:arm64 (from .../libpython3-stdlib_3.3.2-14ubuntu1_arm64.deb) ... Selecting previously unselected package python3. Unpacking python3 (from .../python3_3.3.2-14ubuntu1_arm64.deb) ... Selecting previously unselected package dh-python. Unpacking dh-python (from .../dh-python_1.20131003-1_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package libasprintf-dev:arm64. Unpacking libasprintf-dev:arm64 (from .../libasprintf-dev_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package libgettextpo-dev:arm64. Unpacking libgettextpo-dev:arm64 (from .../libgettextpo-dev_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-10ubuntu3_arm64.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package apparmor-easyprof. Unpacking apparmor-easyprof (from .../apparmor-easyprof_2.8.0-0ubuntu31_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.8.0-0ubuntu31_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20130630ubuntu1_all.deb) ... Selecting previously unselected package libmpich2-3. Unpacking libmpich2-3 (from .../libmpich2-3_1.4.1-4.2ubuntu2_arm64.deb) ... Selecting previously unselected package libmpich2-dev. Unpacking libmpich2-dev (from .../libmpich2-dev_1.4.1-4.2ubuntu2_arm64.deb) ... Selecting previously unselected package mpi-default-dev. Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_arm64.deb) ... Setting up libexpat1:arm64 (2.1.0-4) ... Setting up libffi6:arm64 (3.0.13-4) ... Setting up libmagic1:arm64 (5.11-2ubuntu4) ... Setting up libssl1.0.0:arm64 (1.0.1e-3ubuntu1) ... Setting up libpython3.3-minimal:arm64 (3.3.2-7ubuntu3) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:arm64 (3.3.2-7ubuntu3) ... Setting up python3.3-minimal (3.3.2-7ubuntu3) ... Setting up libasprintf0c2:arm64 (0.18.1.1-10ubuntu3) ... Setting up libglib2.0-0:arm64 (2.38.0-1ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.2.4-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:arm64 (0.6.8-2) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu1) ... Setting up libgettextpo0:arm64 (0.18.1.1-10ubuntu3) ... Setting up python3.3 (3.3.2-7ubuntu3) ... Setting up python3-minimal (3.3.2-14ubuntu1) ... Setting up libpython3-stdlib:arm64 (3.3.2-14ubuntu1) ... Setting up file (5.11-2ubuntu4) ... Setting up gettext-base (0.18.1.1-10ubuntu3) ... Setting up libasprintf-dev:arm64 (0.18.1.1-10ubuntu3) ... Setting up libgettextpo-dev:arm64 (0.18.1.1-10ubuntu3) ... Setting up gettext (0.18.1.1-10ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libmpich2-3 (1.4.1-4.2ubuntu2) ... Setting up libmpich2-dev (1.4.1-4.2ubuntu2) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.1) ... Setting up python3 (3.3.2-14ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20131003-1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu31) ... Setting up dh-apparmor (2.8.0-0ubuntu31) ... Setting up debhelper (9.20130630ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.1-10ubuntu8 g++-4.8_4.8.1-10ubuntu8 binutils_2.23.52.20130913-0ubuntu1 libstdc++-4.8-dev_4.8.1-10ubuntu8 libstdc++6_4.8.1-10ubuntu8 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sun Sep 8 01:15:59 2013 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-3.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-3.debian.tar.gz dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-3 dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' /bin/rm -f *.o make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c mpicc -c -g sequence.c mpicc -c -g showpair.c mpicc -c -g malign.c mpicc -c -g malign_mpi_progressive.c malign_mpi_progressive.c: In function 'key_compare': malign_mpi_progressive.c:843:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] v1 = *(int *) (*((int *) e1)); ^ malign_mpi_progressive.c:844:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] v2 = *(int *) (*((int *) e2)); ^ mpicc -c -g malign_mpi_pdiff.c mpicc -c -g util.c mpicc -DSERIAL_NJTREE -c -g trees.c mpicc -c -g gcgcheck.c mpicc -c -g prfalign_mpi_pdiff.c mpicc -c -g prfalign_mpi_progressive.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g pairalign_new.c mpicc -c -g calcgapcoeff.c mpicc -c -g calcprf1.c mpicc -c -g calcprf2.c mpicc -c -g calctree.c mpicc -c -g readmat.c mpicc -c -g alnscore.c mpicc -c -g random.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g parallel_compare.c mpicc -c -g prfalign.c mpicc -c -g stupid.c mpicc -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `clustalw-mpi-dbgsym' in `../clustalw-mpi-dbgsym_0.15-3_arm64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/clustalw-mpi/usr/bin/clustalw-mpi was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: PNG optimization for package clustalw-mpi took 0 s dpkg-deb: warning: 'debian/clustalw-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-mpi' in `../clustalw-mpi_0.15-3_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../clustalw-mpi_0.15-3_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131013-1040 Publishing debug debs. chroot-autobuild/build/buildd/clustalw-mpi_0.15-3_arm64.deb: new debian package, version 2.0. size 131658 bytes: control archive=1358 bytes. 1775 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-3 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 456 Depends: libc6 (>= 2.17), libmpich2-3 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ chroot-autobuild/build/buildd/clustalw-mpi_0.15-3_arm64.deb: drwxr-xr-x root/root 0 2013-10-13 10:40 ./ drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/ drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/bin/ -rwxr-xr-x root/root 399352 2013-10-13 10:40 ./usr/bin/clustalw-mpi drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/share/ drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/share/man/ drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/share/man/man1/ -rw-r--r-- root/root 596 2013-10-13 10:40 ./usr/share/man/man1/clustalw-mpi.1.gz drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/share/doc/clustalw-mpi/ drwxr-xr-x root/root 0 2013-10-13 10:40 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 3834 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz -rw-r--r-- root/root 12960 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 1864 2013-09-08 01:08 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz -rw-r--r-- root/root 1994 2008-05-23 07:36 ./usr/share/doc/clustalw-mpi/History -rw-r--r-- root/root 2602 2008-05-23 07:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1903 2013-09-08 00:21 ./usr/share/doc/clustalw-mpi/copyright clustalw-mpi_0.15-3_arm64.changes: Format: 1.8 Date: Sun, 08 Sep 2013 10:08:06 +0900 Source: clustalw-mpi Binary: clustalw-mpi Architecture: arm64 Version: 0.15-3 Distribution: saucy-proposed Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Charles Plessy Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Closes: 722073 Changes: clustalw-mpi (0.15-3) unstable; urgency=low . * Removed obsolete DM-Upload-Allowed field. * Using Debhelper 9. * Normalised VCS URLs. * Normalised debian/control using config-model. * Conforms to Policy 3.9.4. * Version link to GPL-2 in debian/copyright. * Escape minus sign in ‘debian/clustalw-mpi.1’. * Uploaded for openmpi transition (Closes: #722073). Checksums-Sha1: 2dba52237a82680fd14ade34805346b582ee252f 131658 clustalw-mpi_0.15-3_arm64.deb Checksums-Sha256: a1266fcb9f09bd0c78500199d9fd7d0370ccaf05fadfd65dc0c7550e63d67315 131658 clustalw-mpi_0.15-3_arm64.deb Files: 2cb269596ba451fc652c7f017c34aad3 131658 non-free/science optional clustalw-mpi_0.15-3_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131013-1040 Build needed 00:00:21, 4084k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-4974782'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-4974782/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-4974782'] Unmounting chroot for build PACKAGEBUILD-4974782... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-4974782'] Removing build PACKAGEBUILD-4974782