RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux kishi06 3.2.0-51-highbank #77-Ubuntu SMP PREEMPT Thu Jul 25 04:09:51 UTC 2013 armv7l Buildd toolchain package versions: launchpad-buildd_115~0.IS.08.04 python-lpbuildd_115~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 14 Sep 01:26:59 ntpdate[18288]: adjust time server 10.211.37.1 offset -0.002928 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-4974783', '/home/buildd/filecache-default/a2fc9f91384b34a9eec345fc176971a233ea7a2b'] Unpacking chroot for build PACKAGEBUILD-4974783 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-4974783'] Mounting chroot for build PACKAGEBUILD-4974783 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-4974783', 'deb http://ftpmaster.internal/ubuntu saucy main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-4974783 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-4974783', 'armhf'] Updating debian chroot for build PACKAGEBUILD-4974783 Ign http://ftpmaster.internal saucy InRelease Ign http://archive-team.internal saucy InRelease Ign http://ftpmaster.internal saucy-security InRelease Ign http://archive-team.internal saucy Release.gpg Ign http://ftpmaster.internal saucy-updates InRelease Get:1 http://archive-team.internal saucy Release [728 B] Ign http://ftpmaster.internal saucy-proposed InRelease Get:2 http://ftpmaster.internal saucy Release.gpg [933 B] Get:3 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:4 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal saucy-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal saucy Release [49.6 kB] Get:7 http://archive-team.internal saucy/main armhf Packages Get:8 http://ftpmaster.internal saucy-security Release [49.6 kB] Get:9 http://ftpmaster.internal saucy-updates Release [49.6 kB] Ign http://archive-team.internal saucy/main Translation-en Get:10 http://ftpmaster.internal saucy-proposed Release [49.6 kB] Get:11 http://ftpmaster.internal saucy/main armhf Packages [1242 kB] Get:12 http://ftpmaster.internal saucy/restricted armhf Packages [1161 B] Get:13 http://ftpmaster.internal saucy/universe armhf Packages [5487 kB] Get:14 http://ftpmaster.internal saucy/multiverse armhf Packages [112 kB] Get:15 http://ftpmaster.internal saucy/main Translation-en [712 kB] Get:16 http://ftpmaster.internal saucy/multiverse Translation-en [101 kB] Get:17 http://ftpmaster.internal saucy/restricted Translation-en [2884 B] Get:18 http://ftpmaster.internal saucy/universe Translation-en [3875 kB] Get:19 http://ftpmaster.internal saucy-security/main armhf Packages [14 B] Get:20 http://ftpmaster.internal saucy-security/restricted armhf Packages [14 B] Get:21 http://ftpmaster.internal saucy-security/universe armhf Packages [14 B] Get:22 http://ftpmaster.internal saucy-security/multiverse armhf Packages [14 B] Get:23 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal saucy-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal saucy-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal saucy-updates/main armhf Packages [14 B] Get:28 http://ftpmaster.internal saucy-updates/restricted armhf Packages [14 B] Get:29 http://ftpmaster.internal saucy-updates/universe armhf Packages [14 B] Get:30 http://ftpmaster.internal saucy-updates/multiverse armhf Packages [14 B] Get:31 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal saucy-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal saucy-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal saucy-proposed/main armhf Packages [18.4 kB] Get:36 http://ftpmaster.internal saucy-proposed/restricted armhf Packages [14 B] Get:37 http://ftpmaster.internal saucy-proposed/universe armhf Packages [46.5 kB] Get:38 http://ftpmaster.internal saucy-proposed/multiverse armhf Packages [1725 B] Get:39 http://ftpmaster.internal saucy-proposed/main Translation-en [10.9 kB] Get:40 http://ftpmaster.internal saucy-proposed/multiverse Translation-en [1348 B] Get:41 http://ftpmaster.internal saucy-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal saucy-proposed/universe Translation-en [41.3 kB] Fetched 11.9 MB in 14s (810 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libapt-pkg4.12 libasan0 libatomic1 libcurl3-gnutls libgcc-4.8-dev libgcc1 libgomp1 libgpg-error0 libstdc++-4.8-dev libstdc++6 libudev1 linux-libc-dev lsb-base mountall udev 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 27.6 MB of archives. After this operation, 24.6 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgomp1 libasan0 gcc-4.8-base libgcc1 libatomic1 cpp-4.8 binutils libstdc++-4.8-dev g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++6 libapt-pkg4.12 apt lsb-base udev libudev1 mountall libcurl3-gnutls libgpg-error0 apt-transport-https linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libgomp1 armhf 4.8.1-10ubuntu1 [25.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libasan0 armhf 4.8.1-10ubuntu1 [67.4 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8-base armhf 4.8.1-10ubuntu1 [16.5 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libgcc1 armhf 1:4.8.1-10ubuntu1 [49.0 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libatomic1 armhf 4.8.1-10ubuntu1 [6766 B] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main cpp-4.8 armhf 4.8.1-10ubuntu1 [5185 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main binutils armhf 2.23.52.20130828-1ubuntu1 [3424 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++-4.8-dev armhf 4.8.1-10ubuntu1 [1806 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main g++-4.8 armhf 4.8.1-10ubuntu1 [6369 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8 armhf 4.8.1-10ubuntu1 [5897 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libgcc-4.8-dev armhf 4.8.1-10ubuntu1 [302 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++6 armhf 4.8.1-10ubuntu1 [279 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main libapt-pkg4.12 armhf 0.9.9.1~ubuntu3 [752 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main apt armhf 0.9.9.1~ubuntu3 [1202 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main lsb-base all 4.1+Debian11ubuntu4 [14.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main udev armhf 204-0ubuntu11 [1007 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libudev1 armhf 204-0ubuntu11 [32.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main mountall armhf 2.50 [68.0 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libcurl3-gnutls armhf 7.32.0-1ubuntu1 [162 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libgpg-error0 armhf 1.12-0.2 [11.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main apt-transport-https armhf 0.9.9.1~ubuntu3 [15.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main linux-libc-dev armhf 3.11.0-7.13 [913 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.6 MB in 3s (7386 kB/s) (Reading database ... 11884 files and directories currently installed.) Preparing to replace libgomp1:armhf 4.8.1-9ubuntu1 (using .../libgomp1_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement libgomp1:armhf ... Preparing to replace libasan0:armhf 4.8.1-9ubuntu1 (using .../libasan0_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement libasan0:armhf ... Preparing to replace gcc-4.8-base:armhf 4.8.1-9ubuntu1 (using .../gcc-4.8-base_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement gcc-4.8-base:armhf ... Setting up gcc-4.8-base:armhf (4.8.1-10ubuntu1) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libgcc1:armhf 1:4.8.1-9ubuntu1 (using .../libgcc1_1%3a4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement libgcc1:armhf ... Setting up libgcc1:armhf (1:4.8.1-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libatomic1:armhf 4.8.1-9ubuntu1 (using .../libatomic1_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement libatomic1:armhf ... Preparing to replace cpp-4.8 4.8.1-9ubuntu1 (using .../cpp-4.8_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace binutils 2.23.52.20130727-1ubuntu1 (using .../binutils_2.23.52.20130828-1ubuntu1_armhf.deb) ... Unpacking replacement binutils ... Preparing to replace libstdc++-4.8-dev:armhf 4.8.1-9ubuntu1 (using .../libstdc++-4.8-dev_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement libstdc++-4.8-dev:armhf ... Preparing to replace g++-4.8 4.8.1-9ubuntu1 (using .../g++-4.8_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.1-9ubuntu1 (using .../gcc-4.8_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:armhf 4.8.1-9ubuntu1 (using .../libgcc-4.8-dev_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement libgcc-4.8-dev:armhf ... Preparing to replace libstdc++6:armhf 4.8.1-9ubuntu1 (using .../libstdc++6_4.8.1-10ubuntu1_armhf.deb) ... Unpacking replacement libstdc++6:armhf ... Setting up libstdc++6:armhf (4.8.1-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libapt-pkg4.12:armhf 0.9.9.1~ubuntu2 (using .../libapt-pkg4.12_0.9.9.1~ubuntu3_armhf.deb) ... Unpacking replacement libapt-pkg4.12:armhf ... Setting up libapt-pkg4.12:armhf (0.9.9.1~ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace apt 0.9.9.1~ubuntu2 (using .../apt_0.9.9.1~ubuntu3_armhf.deb) ... Unpacking replacement apt ... Setting up apt (0.9.9.1~ubuntu3) ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 11884 files and directories currently installed.) Preparing to replace lsb-base 4.1+Debian11ubuntu3 (using .../lsb-base_4.1+Debian11ubuntu4_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.1+Debian11ubuntu4) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace udev 204-0ubuntu10 (using .../udev_204-0ubuntu11_armhf.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:armhf 204-0ubuntu10 (using .../libudev1_204-0ubuntu11_armhf.deb) ... Unpacking replacement libudev1:armhf ... Preparing to replace mountall 2.49 (using .../mountall_2.50_armhf.deb) ... Unpacking replacement mountall ... Preparing to replace libcurl3-gnutls:armhf 7.31.0-2ubuntu1 (using .../libcurl3-gnutls_7.32.0-1ubuntu1_armhf.deb) ... Unpacking replacement libcurl3-gnutls:armhf ... Preparing to replace libgpg-error0:armhf 1.12-0.1 (using .../libgpg-error0_1.12-0.2_armhf.deb) ... Unpacking replacement libgpg-error0:armhf ... Preparing to replace apt-transport-https 0.9.9.1~ubuntu2 (using .../apt-transport-https_0.9.9.1~ubuntu3_armhf.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev:armhf 3.11.0-4.9 (using .../linux-libc-dev_3.11.0-7.13_armhf.deb) ... Unpacking replacement linux-libc-dev:armhf ... Setting up libgomp1:armhf (4.8.1-10ubuntu1) ... Setting up libasan0:armhf (4.8.1-10ubuntu1) ... Setting up libatomic1:armhf (4.8.1-10ubuntu1) ... Setting up cpp-4.8 (4.8.1-10ubuntu1) ... Setting up binutils (2.23.52.20130828-1ubuntu1) ... Setting up libgcc-4.8-dev:armhf (4.8.1-10ubuntu1) ... Setting up libstdc++-4.8-dev:armhf (4.8.1-10ubuntu1) ... Setting up gcc-4.8 (4.8.1-10ubuntu1) ... Setting up g++-4.8 (4.8.1-10ubuntu1) ... Setting up libudev1:armhf (204-0ubuntu11) ... Setting up udev (204-0ubuntu11) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up mountall (2.50) ... Installing new version of config file /etc/init/mountall.conf ... Setting up libcurl3-gnutls:armhf (7.32.0-1ubuntu1) ... Setting up libgpg-error0:armhf (1.12-0.2) ... Setting up apt-transport-https (0.9.9.1~ubuntu3) ... Setting up linux-libc-dev:armhf (3.11.0-7.13) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-4974783', 'armhf', 'saucy-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy-proposed', '--purpose=PRIMARY', '--architecture=armhf', '--comp=multiverse', 'clustalw-mpi_0.15-3.dsc'] Initiating build PACKAGEBUILD-4974783 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-51-highbank #77-Ubuntu SMP PREEMPT Thu Jul 25 04:09:51 UTC 2013 armv7l Automatic build of clustalw-mpi_0.15-3 on kishi06 by sbuild/armhf 1.170.5 Build started at 20130914-0128 ****************************************************************************** clustalw-mpi_0.15-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), mpi-default-dev Checking for already installed source dependencies... debhelper: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libibverbs-dev libibverbs1 libmagic1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libtorque2 libunistring0 libxml2 man-db mime-support openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libibverbs-dev libibverbs1 libmagic1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libtorque2 libunistring0 libxml2 man-db mime-support mpi-default-dev openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 14.5 MB of archives. After this operation, 48.2 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 libgettextpo0 file libpython3-stdlib python3.3 python3-minimal dh-python python3 gettext-base libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libtorque2 openmpi-common libibverbs1 libibverbs-dev libopenmpi1.3 libopenmpi-dev mpi-default-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 armhf 2.1.0-4 [101 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 armhf 3.0.13-4 [16.6 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 armhf 5.11-2ubuntu4 [167 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal armhf 3.3.2-3ubuntu1 [575 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib armhf 3.3.2-3ubuntu1 [2638 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal armhf 3.3.2-3ubuntu1 [1434 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 armhf 0.18.1.1-10ubuntu3 [6544 B] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 armhf 2.37.7-1ubuntu1 [890 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 armhf 1.2.4-1 [21.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 armhf 2.9.1+dfsg1-3ubuntu2 [570 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main groff-base armhf 1.22.2-3 [648 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils armhf 9.0.5ubuntu1 [195 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main man-db armhf 2.6.5-2 [684 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 armhf 0.6.8-2 [69.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 armhf 0.9.3-5build1 [395 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 armhf 0.18.1.1-10ubuntu3 [101 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main file armhf 5.11-2ubuntu4 [17.9 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib armhf 3.3.2-14 [8188 B] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 armhf 3.3.2-3ubuntu1 [122 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal armhf 3.3.2-14 [27.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main dh-python all 1.20130903-1 [53.7 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main python3 armhf 3.3.2-14 [9174 B] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base armhf 0.18.1.1-10ubuntu3 [53.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev armhf 0.18.1.1-10ubuntu3 [4446 B] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev armhf 0.18.1.1-10ubuntu3 [119 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main gettext armhf 0.18.1.1-10ubuntu3 [931 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof all 2.8.0-0ubuntu28 [23.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu28 [7710 B] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] Get:33 http://ftpmaster.internal/ubuntu/ saucy/universe libtorque2 armhf 2.4.16+dfsg-1ubuntu1 [73.9 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/universe openmpi-common all 1.4.5-1ubuntu1 [93.3 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main libibverbs1 armhf 1.1.6-1ubuntu2 [22.6 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main libibverbs-dev armhf 1.1.6-1ubuntu2 [71.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/universe libopenmpi1.3 armhf 1.4.5-1ubuntu1 [1143 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/universe libopenmpi-dev armhf 1.4.5-1ubuntu1 [2343 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/universe mpi-default-dev armhf 1.0.1 [3658 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.5 MB in 2s (5501 kB/s) Selecting previously unselected package libexpat1:armhf. (Reading database ... 11884 files and directories currently installed.) Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-4_armhf.deb) ... Selecting previously unselected package libffi6:armhf. Unpacking libffi6:armhf (from .../libffi6_3.0.13-4_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2ubuntu4_armhf.deb) ... Selecting previously unselected package libpython3.3-minimal:armhf. Unpacking libpython3.3-minimal:armhf (from .../libpython3.3-minimal_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:armhf. Unpacking libpython3.3-stdlib:armhf (from .../libpython3.3-stdlib_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-10ubuntu3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.37.7-1ubuntu1_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.4-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.9.1+dfsg1-3ubuntu2_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_armhf.deb) ... Selecting previously unselected package libcroco3:armhf. 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Toolchain package versions: libc6-dev_2.17-91ubuntu1 make_3.81-8.2ubuntu3 dpkg-dev_1.16.10ubuntu3 gcc-4.8_4.8.1-10ubuntu1 g++-4.8_4.8.1-10ubuntu1 binutils_2.23.52.20130828-1ubuntu1 libstdc++-4.8-dev_4.8.1-10ubuntu1 libstdc++6_4.8.1-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sun Sep 8 01:15:59 2013 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-3.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-3.debian.tar.gz dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-3 dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' /bin/rm -f *.o make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c mpicc -c -g sequence.c mpicc -c -g showpair.c mpicc -c -g malign.c mpicc -c -g malign_mpi_progressive.c mpicc -c -g malign_mpi_pdiff.c mpicc -c -g util.c mpicc -DSERIAL_NJTREE -c -g trees.c mpicc -c -g gcgcheck.c mpicc -c -g prfalign_mpi_pdiff.c mpicc -c -g prfalign_mpi_progressive.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g pairalign_new.c mpicc -c -g calcgapcoeff.c mpicc -c -g calcprf1.c mpicc -c -g calcprf2.c mpicc -c -g calctree.c mpicc -c -g readmat.c mpicc -c -g alnscore.c mpicc -c -g random.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g parallel_compare.c mpicc -c -g prfalign.c mpicc -c -g stupid.c mpicc -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `clustalw-mpi-dbgsym' in `../clustalw-mpi-dbgsym_0.15-3_armhf.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: PNG optimization for package clustalw-mpi took 0 s dpkg-deb: warning: 'debian/clustalw-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-mpi' in `../clustalw-mpi_0.15-3_armhf.deb'. dpkg-genchanges -B -mUbuntu/armhf Build Daemon >../clustalw-mpi_0.15-3_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20130914-0129 Publishing debug debs. chroot-autobuild/build/buildd/clustalw-mpi_0.15-3_armhf.deb: new debian package, version 2.0. size 127062 bytes: control archive= 1352 bytes. 1776 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 373 Depends: libc6 (>= 2.7), libopenmpi1.3 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ chroot-autobuild/build/buildd/clustalw-mpi_0.15-3_armhf.deb: drwxr-xr-x root/root 0 2013-09-14 01:29 ./ drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/ drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/share/ drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/share/man/ drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/share/man/man1/ -rw-r--r-- root/root 596 2013-09-14 01:29 ./usr/share/man/man1/clustalw-mpi.1.gz drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/share/doc/clustalw-mpi/ -rw-r--r-- root/root 1864 2013-09-08 01:08 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 3834 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz -rw-r--r-- root/root 12960 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 2602 2008-05-23 07:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1994 2008-05-23 07:36 ./usr/share/doc/clustalw-mpi/History -rw-r--r-- root/root 1903 2013-09-08 00:21 ./usr/share/doc/clustalw-mpi/copyright drwxr-xr-x root/root 0 2013-09-14 01:29 ./usr/bin/ -rwxr-xr-x root/root 315168 2013-09-14 01:29 ./usr/bin/clustalw-mpi clustalw-mpi_0.15-3_armhf.changes: Format: 1.8 Date: Sun, 08 Sep 2013 10:08:06 +0900 Source: clustalw-mpi Binary: clustalw-mpi Architecture: armhf Version: 0.15-3 Distribution: saucy-proposed Urgency: low Maintainer: Ubuntu/armhf Build Daemon Changed-By: Charles Plessy Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Closes: 722073 Changes: clustalw-mpi (0.15-3) unstable; urgency=low . * Removed obsolete DM-Upload-Allowed field. * Using Debhelper 9. * Normalised VCS URLs. * Normalised debian/control using config-model. * Conforms to Policy 3.9.4. * Version link to GPL-2 in debian/copyright. * Escape minus sign in ‘debian/clustalw-mpi.1’. * Uploaded for openmpi transition (Closes: #722073). Checksums-Sha1: ae31d3adda7a145e5012aad3be5e53af351ff560 127062 clustalw-mpi_0.15-3_armhf.deb Checksums-Sha256: eb2b447a822197780790b132dd6b1d83b6716affffe6420311811e49b8b3a412 127062 clustalw-mpi_0.15-3_armhf.deb Files: 976ed0a25982ff518b084a9a7fb6db51 127062 non-free/science optional clustalw-mpi_0.15-3_armhf.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20130914-0129 Build needed 00:00:31, 2716k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-4974783'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-4974783/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-4974783'] Unmounting chroot for build PACKAGEBUILD-4974783... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-4974783'] Removing build PACKAGEBUILD-4974783