RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux sagari 3.2.0-49-powerpc64-smp #75-Ubuntu SMP Tue Jun 18 17:51:20 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_115~0.IS.08.04 python-lpbuildd_115~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 14 Sep 01:26:59 ntpdate[30659]: adjust time server 10.211.37.1 offset 0.000533 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-4974785', '/home/buildd/filecache-default/5ca970eee28e35f6136e124ad3997f0b08e1a6fe'] Unpacking chroot for build PACKAGEBUILD-4974785 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-4974785'] Mounting chroot for build PACKAGEBUILD-4974785 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-4974785', 'deb http://ftpmaster.internal/ubuntu saucy main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu saucy-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-4974785 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-4974785', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-4974785 Ign http://ftpmaster.internal saucy InRelease Ign http://ftpmaster.internal saucy-security InRelease Ign http://ftpmaster.internal saucy-updates InRelease Ign http://ftpmaster.internal saucy-proposed InRelease Get:1 http://ftpmaster.internal saucy Release.gpg [933 B] Get:2 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:3 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal saucy-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal saucy Release [49.6 kB] Get:6 http://ftpmaster.internal saucy-security Release [49.6 kB] Get:7 http://ftpmaster.internal saucy-updates Release [49.6 kB] Get:8 http://ftpmaster.internal saucy-proposed Release [49.6 kB] Get:9 http://ftpmaster.internal saucy/main powerpc Packages [1230 kB] Ign http://archive-team.internal saucy InRelease Ign http://archive-team.internal saucy Release.gpg Get:10 http://ftpmaster.internal saucy/restricted powerpc Packages [14 B] Get:11 http://ftpmaster.internal saucy/universe powerpc Packages [5494 kB] Get:12 http://archive-team.internal saucy Release [742 B] Get:13 http://archive-team.internal saucy/main powerpc Packages Ign http://archive-team.internal saucy/main Translation-en Get:14 http://ftpmaster.internal saucy/multiverse powerpc Packages [115 kB] Get:15 http://ftpmaster.internal saucy/main Translation-en [712 kB] Get:16 http://ftpmaster.internal saucy/multiverse Translation-en [101 kB] Get:17 http://ftpmaster.internal saucy/restricted Translation-en [2884 B] Get:18 http://ftpmaster.internal saucy/universe Translation-en [3875 kB] Get:19 http://ftpmaster.internal saucy-security/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal saucy-security/restricted powerpc Packages [14 B] Get:21 http://ftpmaster.internal saucy-security/universe powerpc Packages [14 B] Get:22 http://ftpmaster.internal saucy-security/multiverse powerpc Packages [14 B] Get:23 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal saucy-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal saucy-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal saucy-updates/main powerpc Packages [14 B] Get:28 http://ftpmaster.internal saucy-updates/restricted powerpc Packages [14 B] Get:29 http://ftpmaster.internal saucy-updates/universe powerpc Packages [14 B] Get:30 http://ftpmaster.internal saucy-updates/multiverse powerpc Packages [14 B] Get:31 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal saucy-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal saucy-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal saucy-proposed/main powerpc Packages [18.0 kB] Get:36 http://ftpmaster.internal saucy-proposed/restricted powerpc Packages [14 B] Get:37 http://ftpmaster.internal saucy-proposed/universe powerpc Packages [46.4 kB] Get:38 http://ftpmaster.internal saucy-proposed/multiverse powerpc Packages [1725 B] Get:39 http://ftpmaster.internal saucy-proposed/main Translation-en [10.9 kB] Get:40 http://ftpmaster.internal saucy-proposed/multiverse Translation-en [1348 B] Get:41 http://ftpmaster.internal saucy-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal saucy-proposed/universe Translation-en [41.3 kB] Fetched 11.9 MB in 4s (2866 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libapt-pkg4.12 libasan0 libatomic1 libcurl3-gnutls libgcc-4.8-dev libgcc1 libgomp1 libgpg-error0 libstdc++-4.8-dev libstdc++6 libudev1 linux-libc-dev lsb-base mountall udev 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 32.6 MB of archives. After this operation, 9216 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! libgomp1 libasan0 gcc-4.8-base libgcc1 libatomic1 cpp-4.8 binutils libstdc++-4.8-dev g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++6 libapt-pkg4.12 apt lsb-base udev libudev1 mountall libcurl3-gnutls libgpg-error0 apt-transport-https linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libgomp1 powerpc 4.8.1-10ubuntu1 [29.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libasan0 powerpc 4.8.1-10ubuntu1 [82.6 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8-base powerpc 4.8.1-10ubuntu1 [16.3 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libgcc1 powerpc 1:4.8.1-10ubuntu1 [43.8 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libatomic1 powerpc 4.8.1-10ubuntu1 [8402 B] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main cpp-4.8 powerpc 4.8.1-10ubuntu1 [6137 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main binutils powerpc 2.23.52.20130828-1ubuntu1 [4099 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++-4.8-dev powerpc 4.8.1-10ubuntu1 [1785 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main g++-4.8 powerpc 4.8.1-10ubuntu1 [8210 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main gcc-4.8 powerpc 4.8.1-10ubuntu1 [6912 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libgcc-4.8-dev powerpc 4.8.1-10ubuntu1 [416 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libstdc++6 powerpc 4.8.1-10ubuntu1 [396 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main libapt-pkg4.12 powerpc 0.9.9.1~ubuntu3 [841 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main apt powerpc 0.9.9.1~ubuntu3 [1250 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main lsb-base all 4.1+Debian11ubuntu4 [14.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main udev powerpc 204-0ubuntu11 [1083 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libudev1 powerpc 204-0ubuntu11 [43.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main mountall powerpc 2.50 [65.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libcurl3-gnutls powerpc 7.32.0-1ubuntu1 [195 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libgpg-error0 powerpc 1.12-0.2 [12.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main apt-transport-https powerpc 0.9.9.1~ubuntu3 [16.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main linux-libc-dev powerpc 3.11.0-7.13 [931 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.6 MB in 1s (17.1 MB/s) (Reading database ... 11949 files and directories currently installed.) Preparing to replace libgomp1:powerpc 4.8.1-9ubuntu1 (using .../libgomp1_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement libgomp1:powerpc ... Preparing to replace libasan0:powerpc 4.8.1-9ubuntu1 (using .../libasan0_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement libasan0:powerpc ... Preparing to replace gcc-4.8-base:powerpc 4.8.1-9ubuntu1 (using .../gcc-4.8-base_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8-base:powerpc ... Setting up gcc-4.8-base:powerpc (4.8.1-10ubuntu1) ... (Reading database ... 11949 files and directories currently installed.) Preparing to replace libgcc1:powerpc 1:4.8.1-9ubuntu1 (using .../libgcc1_1%3a4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement libgcc1:powerpc ... Setting up libgcc1:powerpc (1:4.8.1-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11949 files and directories currently installed.) Preparing to replace libatomic1:powerpc 4.8.1-9ubuntu1 (using .../libatomic1_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement libatomic1:powerpc ... Preparing to replace cpp-4.8 4.8.1-9ubuntu1 (using .../cpp-4.8_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace binutils 2.23.52.20130727-1ubuntu1 (using .../binutils_2.23.52.20130828-1ubuntu1_powerpc.deb) ... Unpacking replacement binutils ... Preparing to replace libstdc++-4.8-dev:powerpc 4.8.1-9ubuntu1 (using .../libstdc++-4.8-dev_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++-4.8-dev:powerpc ... Preparing to replace g++-4.8 4.8.1-9ubuntu1 (using .../g++-4.8_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.1-9ubuntu1 (using .../gcc-4.8_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:powerpc 4.8.1-9ubuntu1 (using .../libgcc-4.8-dev_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement libgcc-4.8-dev:powerpc ... Preparing to replace libstdc++6:powerpc 4.8.1-9ubuntu1 (using .../libstdc++6_4.8.1-10ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6:powerpc ... Setting up libstdc++6:powerpc (4.8.1-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11949 files and directories currently installed.) Preparing to replace libapt-pkg4.12:powerpc 0.9.9.1~ubuntu2 (using .../libapt-pkg4.12_0.9.9.1~ubuntu3_powerpc.deb) ... Unpacking replacement libapt-pkg4.12:powerpc ... Setting up libapt-pkg4.12:powerpc (0.9.9.1~ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11949 files and directories currently installed.) Preparing to replace apt 0.9.9.1~ubuntu2 (using .../apt_0.9.9.1~ubuntu3_powerpc.deb) ... Unpacking replacement apt ... Setting up apt (0.9.9.1~ubuntu3) ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 11949 files and directories currently installed.) Preparing to replace lsb-base 4.1+Debian11ubuntu3 (using .../lsb-base_4.1+Debian11ubuntu4_all.deb) ... Unpacking replacement lsb-base ... Setting up lsb-base (4.1+Debian11ubuntu4) ... (Reading database ... 11949 files and directories currently installed.) Preparing to replace udev 204-0ubuntu10 (using .../udev_204-0ubuntu11_powerpc.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:powerpc 204-0ubuntu10 (using .../libudev1_204-0ubuntu11_powerpc.deb) ... Unpacking replacement libudev1:powerpc ... Preparing to replace mountall 2.49 (using .../mountall_2.50_powerpc.deb) ... Unpacking replacement mountall ... Preparing to replace libcurl3-gnutls:powerpc 7.31.0-2ubuntu1 (using .../libcurl3-gnutls_7.32.0-1ubuntu1_powerpc.deb) ... Unpacking replacement libcurl3-gnutls:powerpc ... Preparing to replace libgpg-error0:powerpc 1.12-0.1 (using .../libgpg-error0_1.12-0.2_powerpc.deb) ... Unpacking replacement libgpg-error0:powerpc ... Preparing to replace apt-transport-https 0.9.9.1~ubuntu2 (using .../apt-transport-https_0.9.9.1~ubuntu3_powerpc.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace linux-libc-dev:powerpc 3.11.0-4.9 (using .../linux-libc-dev_3.11.0-7.13_powerpc.deb) ... Unpacking replacement linux-libc-dev:powerpc ... Setting up libgomp1:powerpc (4.8.1-10ubuntu1) ... Setting up libasan0:powerpc (4.8.1-10ubuntu1) ... Setting up libatomic1:powerpc (4.8.1-10ubuntu1) ... Setting up cpp-4.8 (4.8.1-10ubuntu1) ... Setting up binutils (2.23.52.20130828-1ubuntu1) ... Setting up libgcc-4.8-dev:powerpc (4.8.1-10ubuntu1) ... Setting up libstdc++-4.8-dev:powerpc (4.8.1-10ubuntu1) ... Setting up gcc-4.8 (4.8.1-10ubuntu1) ... Setting up g++-4.8 (4.8.1-10ubuntu1) ... Setting up libudev1:powerpc (204-0ubuntu11) ... Setting up udev (204-0ubuntu11) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up mountall (2.50) ... Installing new version of config file /etc/init/mountall.conf ... Setting up libcurl3-gnutls:powerpc (7.32.0-1ubuntu1) ... Setting up libgpg-error0:powerpc (1.12-0.2) ... Setting up apt-transport-https (0.9.9.1~ubuntu3) ... Setting up linux-libc-dev:powerpc (3.11.0-7.13) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-4974785', 'powerpc', 'saucy-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=multiverse', 'clustalw-mpi_0.15-3.dsc'] Initiating build PACKAGEBUILD-4974785 with 24 jobs across 24 processor cores. Kernel reported to sbuild: 3.2.0-49-powerpc64-smp #75-Ubuntu SMP Tue Jun 18 17:51:20 UTC 2013 ppc Automatic build of clustalw-mpi_0.15-3 on sagari by sbuild/powerpc 1.170.5 Build started at 20130914-0127 ****************************************************************************** clustalw-mpi_0.15-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), mpi-default-dev Checking for already installed source dependencies... debhelper: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libibverbs-dev libibverbs1 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libtorque2 libunistring0 libxml2 man-db mime-support openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libibverbs-dev libibverbs1 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libtorque2 libunistring0 libxml2 man-db mime-support mpi-default-dev openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 15.9 MB of archives. After this operation, 57.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 libgettextpo0 file libpython3-stdlib python3.3 python3-minimal dh-python python3 gettext-base libnuma1 libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libtorque2 openmpi-common libibverbs1 libibverbs-dev libopenmpi1.3 libopenmpi-dev mpi-default-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 powerpc 2.1.0-4 [132 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 powerpc 3.0.13-4 [20.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 powerpc 5.11-2ubuntu4 [170 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal powerpc 3.3.2-3ubuntu1 [580 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib powerpc 3.3.2-3ubuntu1 [2772 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal powerpc 3.3.2-3ubuntu1 [1861 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 powerpc 0.18.1.1-10ubuntu3 [6984 B] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 powerpc 2.37.7-1ubuntu1 [894 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 powerpc 1.2.4-1 [26.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 powerpc 2.9.1+dfsg1-3ubuntu2 [645 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main groff-base powerpc 1.22.2-3 [705 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main man-db powerpc 2.6.5-2 [686 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 powerpc 0.6.8-2 [70.2 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 powerpc 0.9.3-5build1 [412 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 powerpc 0.18.1.1-10ubuntu3 [115 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main file powerpc 5.11-2ubuntu4 [18.2 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib powerpc 3.3.2-14 [8196 B] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 powerpc 3.3.2-3ubuntu1 [123 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal powerpc 3.3.2-14 [27.5 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main dh-python all 1.20130903-1 [53.7 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main python3 powerpc 3.3.2-14 [9170 B] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base powerpc 0.18.1.1-10ubuntu3 [64.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main libnuma1 powerpc 2.0.8-3 [22.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev powerpc 0.18.1.1-10ubuntu3 [4614 B] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev powerpc 0.18.1.1-10ubuntu3 [158 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main gettext powerpc 0.18.1.1-10ubuntu3 [992 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof all 2.8.0-0ubuntu28 [23.3 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu28 [7710 B] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/universe libtorque2 powerpc 2.4.16+dfsg-1ubuntu1 [89.1 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/universe openmpi-common all 1.4.5-1ubuntu1 [93.3 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main libibverbs1 powerpc 1.1.6-1ubuntu2 [26.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main libibverbs-dev powerpc 1.1.6-1ubuntu2 [74.7 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/universe libopenmpi1.3 powerpc 1.4.5-1ubuntu1 [1285 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/universe libopenmpi-dev powerpc 1.4.5-1ubuntu1 [2609 kB] Get:40 http://ftpmaster.internal/ubuntu/ saucy/universe mpi-default-dev powerpc 1.0.1 [3648 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.9 MB in 1s (12.4 MB/s) Selecting previously unselected package libexpat1:powerpc. (Reading database ... 11949 files and directories currently installed.) Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-4_powerpc.deb) ... Selecting previously unselected package libffi6:powerpc. Unpacking libffi6:powerpc (from .../libffi6_3.0.13-4_powerpc.deb) ... Selecting previously unselected package libmagic1:powerpc. Unpacking libmagic1:powerpc (from .../libmagic1_5.11-2ubuntu4_powerpc.deb) ... Selecting previously unselected package libpython3.3-minimal:powerpc. Unpacking libpython3.3-minimal:powerpc (from .../libpython3.3-minimal_3.3.2-3ubuntu1_powerpc.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:powerpc. Unpacking libpython3.3-stdlib:powerpc (from .../libpython3.3-stdlib_3.3.2-3ubuntu1_powerpc.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-3ubuntu1_powerpc.deb) ... Selecting previously unselected package libasprintf0c2:powerpc. Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.1.1-10ubuntu3_powerpc.deb) ... Selecting previously unselected package libglib2.0-0:powerpc. Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.37.7-1ubuntu1_powerpc.deb) ... Selecting previously unselected package libpipeline1:powerpc. Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.4-1_powerpc.deb) ... Selecting previously unselected package libxml2:powerpc. Unpacking libxml2:powerpc (from .../libxml2_2.9.1+dfsg1-3ubuntu2_powerpc.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_powerpc.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_powerpc.deb) ... Selecting previously unselected package man-db. 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Setting up python3 (3.3.2-14) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu28) ... Setting up dh-apparmor (2.8.0-0ubuntu28) ... Setting up debhelper (9.20130630ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-91ubuntu1 make_3.81-8.2ubuntu3 dpkg-dev_1.16.10ubuntu3 gcc-4.8_4.8.1-10ubuntu1 g++-4.8_4.8.1-10ubuntu1 binutils_2.23.52.20130828-1ubuntu1 libstdc++-4.8-dev_4.8.1-10ubuntu1 libstdc++6_4.8.1-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sun Sep 8 01:15:59 2013 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-3.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-3.debian.tar.gz dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-3 dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' /bin/rm -f *.o make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c mpicc -c -g sequence.c mpicc -c -g showpair.c mpicc -c -g malign.c mpicc -c -g malign_mpi_progressive.c mpicc -c -g malign_mpi_pdiff.c mpicc -c -g util.c mpicc -DSERIAL_NJTREE -c -g trees.c mpicc -c -g gcgcheck.c mpicc -c -g prfalign_mpi_pdiff.c mpicc -c -g prfalign_mpi_progressive.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g pairalign_new.c mpicc -c -g calcgapcoeff.c mpicc -c -g calcprf1.c mpicc -c -g calcprf2.c mpicc -c -g calctree.c mpicc -c -g readmat.c mpicc -c -g alnscore.c mpicc -c -g random.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g parallel_compare.c mpicc -c -g prfalign.c mpicc -c -g stupid.c mpicc -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `clustalw-mpi-dbgsym' in `../clustalw-mpi-dbgsym_0.15-3_powerpc.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: PNG optimization for package clustalw-mpi took 0 s dpkg-deb: warning: 'debian/clustalw-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-mpi' in `../clustalw-mpi_0.15-3_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../clustalw-mpi_0.15-3_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20130914-0128 Publishing debug debs. chroot-autobuild/build/buildd/clustalw-mpi_0.15-3_powerpc.deb: new debian package, version 2.0. size 131828 bytes: control archive= 1354 bytes. 1778 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-3 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 462 Depends: libc6 (>= 2.7), libopenmpi1.3 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ chroot-autobuild/build/buildd/clustalw-mpi_0.15-3_powerpc.deb: drwxr-xr-x root/root 0 2013-09-14 01:27 ./ drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/ drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/share/ drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/share/doc/clustalw-mpi/ -rw-r--r-- root/root 1903 2013-09-08 00:21 ./usr/share/doc/clustalw-mpi/copyright -rw-r--r-- root/root 2602 2008-05-23 07:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1864 2013-09-08 01:08 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 12960 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 3834 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz -rw-r--r-- root/root 1994 2008-05-23 07:36 ./usr/share/doc/clustalw-mpi/History drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/share/man/ drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/share/man/man1/ -rw-r--r-- root/root 596 2013-09-14 01:27 ./usr/share/man/man1/clustalw-mpi.1.gz drwxr-xr-x root/root 0 2013-09-14 01:27 ./usr/bin/ -rwxr-xr-x root/root 405364 2013-09-14 01:27 ./usr/bin/clustalw-mpi clustalw-mpi_0.15-3_powerpc.changes: Format: 1.8 Date: Sun, 08 Sep 2013 10:08:06 +0900 Source: clustalw-mpi Binary: clustalw-mpi Architecture: powerpc Version: 0.15-3 Distribution: saucy-proposed Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Charles Plessy Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Closes: 722073 Changes: clustalw-mpi (0.15-3) unstable; urgency=low . * Removed obsolete DM-Upload-Allowed field. * Using Debhelper 9. * Normalised VCS URLs. * Normalised debian/control using config-model. * Conforms to Policy 3.9.4. * Version link to GPL-2 in debian/copyright. * Escape minus sign in ‘debian/clustalw-mpi.1’. * Uploaded for openmpi transition (Closes: #722073). Checksums-Sha1: 0bbe3cd568ecedfc7eeef503cdd406191c8dcda7 131828 clustalw-mpi_0.15-3_powerpc.deb Checksums-Sha256: c0e55949c95262071e04199f0f78b53604fe0fdf32fff91289677d4e2545f490 131828 clustalw-mpi_0.15-3_powerpc.deb Files: 05ee99c85e58d22ca5cf843033cce198 131828 non-free/science optional clustalw-mpi_0.15-3_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20130914-0128 Build needed 00:00:09, 3088k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-4974785'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-4974785/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-4974785'] Unmounting chroot for build PACKAGEBUILD-4974785... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-4974785'] Removing build PACKAGEBUILD-4974785