RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux sagari 3.2.0-56-powerpc64-smp #86-Ubuntu SMP Tue Oct 22 18:35:25 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 15 Dec 06:15:37 ntpdate[27055]: adjust time server 10.211.37.1 offset -0.000027 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5337389', '/home/buildd/filecache-default/d972e7b601c09e9b2bcae806e3f1a721203389a0'] Unpacking chroot for build PACKAGEBUILD-5337389 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5337389'] Mounting chroot for build PACKAGEBUILD-5337389 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5337389', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5337389 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5337389', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-5337389 Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-security InRelease Ign http://ftpmaster.internal trusty-updates InRelease Get:1 http://archive-team.internal trusty Release [744 B] Ign http://ftpmaster.internal trusty-proposed InRelease Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [58.5 kB] Get:7 http://ftpmaster.internal trusty-security Release [58.5 kB] Get:8 http://ftpmaster.internal trusty-updates Release [58.5 kB] Get:9 http://archive-team.internal trusty/main powerpc Packages Get:10 http://ftpmaster.internal trusty-proposed Release [58.5 kB] Ign http://archive-team.internal trusty/main Translation-en Get:11 http://ftpmaster.internal trusty/main powerpc Packages [1229 kB] Get:12 http://ftpmaster.internal trusty/restricted powerpc Packages [14 B] Get:13 http://ftpmaster.internal trusty/universe powerpc Packages [5652 kB] Get:14 http://ftpmaster.internal trusty/multiverse powerpc Packages [115 kB] Get:15 http://ftpmaster.internal trusty/main Translation-en [729 kB] Get:16 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:17 http://ftpmaster.internal trusty/restricted Translation-en [3433 B] Get:18 http://ftpmaster.internal trusty/universe Translation-en [3998 kB] Get:19 http://ftpmaster.internal trusty-security/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal trusty-security/restricted powerpc Packages [14 B] Get:21 http://ftpmaster.internal trusty-security/universe powerpc Packages [14 B] Get:22 http://ftpmaster.internal trusty-security/multiverse powerpc Packages [14 B] Get:23 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal trusty-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal trusty-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal trusty-updates/main powerpc Packages [14 B] Get:28 http://ftpmaster.internal trusty-updates/restricted powerpc Packages [14 B] Get:29 http://ftpmaster.internal trusty-updates/universe powerpc Packages [14 B] Get:30 http://ftpmaster.internal trusty-updates/multiverse powerpc Packages [14 B] Get:31 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal trusty-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal trusty-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal trusty-proposed/main powerpc Packages [15.8 kB] Get:36 http://ftpmaster.internal trusty-proposed/restricted powerpc Packages [14 B] Get:37 http://ftpmaster.internal trusty-proposed/universe powerpc Packages [233 kB] Get:38 http://ftpmaster.internal trusty-proposed/multiverse powerpc Packages [2658 B] Get:39 http://ftpmaster.internal trusty-proposed/main Translation-en [13.7 kB] Get:40 http://ftpmaster.internal trusty-proposed/multiverse Translation-en [3408 B] Get:41 http://ftpmaster.internal trusty-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal trusty-proposed/universe Translation-en [133 kB] Fetched 12.5 MB in 4s (2852 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils build-essential cpp cpp-4.8 e2fslibs e2fsprogs fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base hostname libapt-pkg4.12 libasan0 libatomic1 libcomerr2 libdb5.3 libfakeroot libgcc-4.8-dev libgcc1 libgcrypt11 libgomp1 liblockfile-bin liblockfile1 libplymouth2 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 linux-libc-dev perl perl-base perl-modules plymouth sed tar 39 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 29.2 MB of archives. After this operation, 1205 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs powerpc 1.42.8-1ubuntu3 [178 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs powerpc 1.42.8-1ubuntu3 [630 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main hostname powerpc 3.15ubuntu1 [11.0 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl powerpc 5.18.1-5 [2172 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-base powerpc 5.18.1-5 [1049 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-modules all 5.18.1-5 [2680 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libdb5.3 powerpc 5.3.28-3ubuntu1 [573 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main sed powerpc 4.2.2-2ubuntu2 [135 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main tar powerpc 1.27-4 [181 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 powerpc 4.8.2-10ubuntu1 [23.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libasan0 powerpc 4.8.2-10ubuntu1 [62.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base powerpc 4.8.2-10ubuntu1 [14.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 powerpc 1:4.8.2-10ubuntu1 [34.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 powerpc 4.8.2-10ubuntu1 [7026 B] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 powerpc 4.8.2-10ubuntu1 [4127 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev powerpc 4.8.2-10ubuntu1 [1063 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 powerpc 4.8.2-10ubuntu1 [5924 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 powerpc 4.8.2-10ubuntu1 [4495 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev powerpc 4.8.2-10ubuntu1 [284 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 powerpc 4.8.2-10ubuntu1 [264 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main binutils powerpc 2.24-2ubuntu1 [2059 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 powerpc 0.9.14.1ubuntu1 [587 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main apt powerpc 0.9.14.1ubuntu1 [935 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 powerpc 1.42.8-1ubuntu3 [60.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libss2 powerpc 1.42.8-1ubuntu3 [65.0 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcrypt11 powerpc 1.5.3-2ubuntu2 [234 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile-bin powerpc 1.09-6ubuntu1 [10.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile1 powerpc 1.09-6ubuntu1 [7638 B] Get:29 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libsqlite3-0 powerpc 3.8.1-1ubuntu3 [300 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main plymouth powerpc 0.8.8-0ubuntu12 [83.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libplymouth2 powerpc 0.8.8-0ubuntu12 [68.0 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https powerpc 0.9.14.1ubuntu1 [23.4 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main cpp powerpc 4:4.8.2-1ubuntu2 [27.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main gcc powerpc 4:4.8.2-1ubuntu2 [5000 B] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main g++ powerpc 4:4.8.2-1ubuntu2 [1498 B] Get:36 http://ftpmaster.internal/ubuntu/ trusty-proposed/main build-essential powerpc 11.6ubuntu6 [4810 B] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libfakeroot powerpc 1.20-3ubuntu1 [21.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main fakeroot powerpc 1.20-3ubuntu1 [53.7 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev powerpc 3.12.0-7.15 [718 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.2 MB in 1s (24.6 MB/s) (Reading database ... 11883 files and directories currently installed.) Preparing to replace e2fslibs:powerpc 1.42.8-1ubuntu1 (using .../e2fslibs_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement e2fslibs:powerpc ... Setting up e2fslibs:powerpc (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace e2fsprogs 1.42.8-1ubuntu1 (using .../e2fsprogs_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42.8-1ubuntu3) ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace hostname 3.13ubuntu1 (using .../hostname_3.15ubuntu1_powerpc.deb) ... Unpacking replacement hostname ... Setting up hostname (3.15ubuntu1) ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace perl 5.18.1-4build1 (using .../perl_5.18.1-5_powerpc.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.18.1-4build1 (using .../perl-base_5.18.1-5_powerpc.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-5) ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace perl-modules 5.18.1-4build1 (using .../perl-modules_5.18.1-5_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libdb5.3:powerpc 5.3.28-3 (using .../libdb5.3_5.3.28-3ubuntu1_powerpc.deb) ... Unpacking replacement libdb5.3:powerpc ... Setting up libdb5.3:powerpc (5.3.28-3ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace sed 4.2.2-2ubuntu1 (using .../sed_4.2.2-2ubuntu2_powerpc.deb) ... Unpacking replacement sed ... Setting up sed (4.2.2-2ubuntu2) ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace tar 1.27-3 (using .../tar_1.27-4_powerpc.deb) ... Unpacking replacement tar ... Setting up tar (1.27-4) ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace libgomp1:powerpc 4.8.2-1ubuntu2 (using .../libgomp1_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libgomp1:powerpc ... Preparing to replace libasan0:powerpc 4.8.2-1ubuntu2 (using .../libasan0_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libasan0:powerpc ... Preparing to replace gcc-4.8-base:powerpc 4.8.2-1ubuntu2 (using .../gcc-4.8-base_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8-base:powerpc ... Setting up gcc-4.8-base:powerpc (4.8.2-10ubuntu1) ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace libgcc1:powerpc 1:4.8.2-1ubuntu2 (using .../libgcc1_1%3a4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libgcc1:powerpc ... Setting up libgcc1:powerpc (1:4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11883 files and directories currently installed.) Preparing to replace libatomic1:powerpc 4.8.2-1ubuntu2 (using .../libatomic1_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libatomic1:powerpc ... Preparing to replace cpp-4.8 4.8.2-1ubuntu2 (using .../cpp-4.8_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace libstdc++-4.8-dev:powerpc 4.8.2-1ubuntu2 (using .../libstdc++-4.8-dev_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++-4.8-dev:powerpc ... Preparing to replace g++-4.8 4.8.2-1ubuntu2 (using .../g++-4.8_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.2-1ubuntu2 (using .../gcc-4.8_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:powerpc 4.8.2-1ubuntu2 (using .../libgcc-4.8-dev_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libgcc-4.8-dev:powerpc ... Preparing to replace libstdc++6:powerpc 4.8.2-1ubuntu2 (using .../libstdc++6_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6:powerpc ... Setting up libstdc++6:powerpc (4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace binutils 2.24-1ubuntu2 (using .../binutils_2.24-2ubuntu1_powerpc.deb) ... Unpacking replacement binutils ... Preparing to replace libapt-pkg4.12:powerpc 0.9.13.1~ubuntu1 (using .../libapt-pkg4.12_0.9.14.1ubuntu1_powerpc.deb) ... Unpacking replacement libapt-pkg4.12:powerpc ... Setting up libapt-pkg4.12:powerpc (0.9.14.1ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace apt 0.9.13.1~ubuntu1 (using .../apt_0.9.14.1ubuntu1_powerpc.deb) ... Unpacking replacement apt ... Setting up apt (0.9.14.1ubuntu1) ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace libcomerr2:powerpc 1.42.8-1ubuntu1 (using .../libcomerr2_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement libcomerr2:powerpc ... Setting up libcomerr2:powerpc (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace libss2:powerpc 1.42.8-1ubuntu1 (using .../libss2_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement libss2:powerpc ... Setting up libss2:powerpc (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace libgcrypt11:powerpc 1.5.3-2ubuntu1 (using .../libgcrypt11_1.5.3-2ubuntu2_powerpc.deb) ... Unpacking replacement libgcrypt11:powerpc ... Preparing to replace liblockfile-bin 1.09-6 (using .../liblockfile-bin_1.09-6ubuntu1_powerpc.deb) ... Unpacking replacement liblockfile-bin ... Preparing to replace liblockfile1:powerpc 1.09-6 (using .../liblockfile1_1.09-6ubuntu1_powerpc.deb) ... Unpacking replacement liblockfile1:powerpc ... Preparing to replace libsqlite3-0:powerpc 3.8.1-1ubuntu1 (using .../libsqlite3-0_3.8.1-1ubuntu3_powerpc.deb) ... Unpacking replacement libsqlite3-0:powerpc ... Preparing to replace plymouth 0.8.8-0ubuntu11 (using .../plymouth_0.8.8-0ubuntu12_powerpc.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2:powerpc 0.8.8-0ubuntu11 (using .../libplymouth2_0.8.8-0ubuntu12_powerpc.deb) ... Unpacking replacement libplymouth2:powerpc ... Preparing to replace apt-transport-https 0.9.13.1~ubuntu1 (using .../apt-transport-https_0.9.14.1ubuntu1_powerpc.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace cpp 4:4.8.1-2ubuntu3 (using .../cpp_4%3a4.8.2-1ubuntu2_powerpc.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.8.1-2ubuntu3 (using .../gcc_4%3a4.8.2-1ubuntu2_powerpc.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.8.1-2ubuntu3 (using .../g++_4%3a4.8.2-1ubuntu2_powerpc.deb) ... Unpacking replacement g++ ... Preparing to replace build-essential 11.6ubuntu5 (using .../build-essential_11.6ubuntu6_powerpc.deb) ... Unpacking replacement build-essential ... Preparing to replace libfakeroot:powerpc 1.20-3 (using .../libfakeroot_1.20-3ubuntu1_powerpc.deb) ... Unpacking replacement libfakeroot:powerpc ... Preparing to replace fakeroot 1.20-3 (using .../fakeroot_1.20-3ubuntu1_powerpc.deb) ... Unpacking replacement fakeroot ... Preparing to replace linux-libc-dev:powerpc 3.12.0-5.13 (using .../linux-libc-dev_3.12.0-7.15_powerpc.deb) ... Unpacking replacement linux-libc-dev:powerpc ... Setting up libgomp1:powerpc (4.8.2-10ubuntu1) ... Setting up libasan0:powerpc (4.8.2-10ubuntu1) ... Setting up libatomic1:powerpc (4.8.2-10ubuntu1) ... Setting up cpp-4.8 (4.8.2-10ubuntu1) ... Setting up libgcc-4.8-dev:powerpc (4.8.2-10ubuntu1) ... Setting up libstdc++-4.8-dev:powerpc (4.8.2-10ubuntu1) ... Setting up binutils (2.24-2ubuntu1) ... Setting up gcc-4.8 (4.8.2-10ubuntu1) ... Setting up g++-4.8 (4.8.2-10ubuntu1) ... Setting up libgcrypt11:powerpc (1.5.3-2ubuntu2) ... Setting up liblockfile-bin (1.09-6ubuntu1) ... Setting up liblockfile1:powerpc (1.09-6ubuntu1) ... Setting up libsqlite3-0:powerpc (3.8.1-1ubuntu3) ... Setting up libplymouth2:powerpc (0.8.8-0ubuntu12) ... Setting up plymouth (0.8.8-0ubuntu12) ... update-initramfs: deferring update (trigger activated) Setting up apt-transport-https (0.9.14.1ubuntu1) ... Setting up cpp (4:4.8.2-1ubuntu2) ... Setting up gcc (4:4.8.2-1ubuntu2) ... Setting up g++ (4:4.8.2-1ubuntu2) ... Setting up build-essential (11.6ubuntu6) ... Setting up libfakeroot:powerpc (1.20-3ubuntu1) ... Setting up fakeroot (1.20-3ubuntu1) ... Setting up linux-libc-dev:powerpc (3.12.0-7.15) ... Setting up perl-modules (5.18.1-5) ... Setting up perl (5.18.1-5) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5337389', 'powerpc', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=multiverse', 'clustalw-mpi_0.15-3build1.dsc'] Initiating build PACKAGEBUILD-5337389 with 24 jobs across 24 processor cores. Kernel reported to sbuild: 3.2.0-56-powerpc64-smp #86-Ubuntu SMP Tue Oct 22 18:35:25 UTC 2013 ppc Automatic build of clustalw-mpi_0.15-3build1 on sagari by sbuild/powerpc 1.170.5 Build started at 20131215-0616 ****************************************************************************** clustalw-mpi_0.15-3build1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), mpi-default-dev Checking for already installed source dependencies... debhelper: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcr0 libcroco3 libexpat1 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libtorque2 libunistring0 libxml2 libxml2-dev man-db mime-support openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff blcr-dkms libhwloc-contrib-plugins pkg-config less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libhwloc-plugins xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcr0 libcroco3 libexpat1 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libtorque2 libunistring0 libxml2 libxml2-dev man-db mime-support mpi-default-dev openmpi-common po-debconf python3 python3-minimal python3.3 python3.3-minimal zlib1g-dev 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 13.1 MB of archives. After this operation, 58.5 MB of additional disk space will be used. 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(Reading database ... 11882 files and directories currently installed.) Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-4ubuntu1_powerpc.deb) ... Selecting previously unselected package libmagic1:powerpc. Unpacking libmagic1:powerpc (from .../libmagic1_1%3a5.14-2ubuntu1_powerpc.deb) ... Selecting previously unselected package libssl1.0.0:powerpc. Unpacking libssl1.0.0:powerpc (from .../libssl1.0.0_1.0.1e-4ubuntu3_powerpc.deb) ... Selecting previously unselected package libpython3.3-minimal:powerpc. Unpacking libpython3.3-minimal:powerpc (from .../libpython3.3-minimal_3.3.3-4_powerpc.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:powerpc. Unpacking libpython3.3-stdlib:powerpc (from .../libpython3.3-stdlib_3.3.3-4_powerpc.deb) ... Selecting previously unselected package python3.3-minimal. 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Setting up libpipeline1:powerpc (1.2.5-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:powerpc (0.6.8-2ubuntu1) ... Setting up libltdl7:powerpc (2.4.2-1.3ubuntu2) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu2) ... Setting up libhwloc5:powerpc (1.8-1) ... Setting up python3.3 (3.3.3-4) ... Setting up python3-minimal (3.3.2-17) ... Setting up libpython3-stdlib:powerpc (3.3.2-17) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... 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Setting up debhelper (9.20131127ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.17.1ubuntu1 gcc-4.8_4.8.2-10ubuntu1 g++-4.8_4.8.2-10ubuntu1 binutils_2.24-2ubuntu1 libstdc++-4.8-dev_4.8.2-10ubuntu1 libstdc++6_4.8.2-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sun Dec 15 06:04:40 2013 UTC using RSA key ID EA330543 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-3build1.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-3build1.debian.tar.gz dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-3build1 dpkg-buildpackage: source distribution trusty dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' /bin/rm -f *.o make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c mpicc -c -g sequence.c mpicc -c -g showpair.c mpicc -c -g malign.c mpicc -c -g malign_mpi_progressive.c mpicc -c -g malign_mpi_pdiff.c mpicc -c -g util.c mpicc -DSERIAL_NJTREE -c -g trees.c mpicc -c -g gcgcheck.c mpicc -c -g prfalign_mpi_pdiff.c mpicc -c -g prfalign_mpi_progressive.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g pairalign_new.c mpicc -c -g calcgapcoeff.c mpicc -c -g calcprf1.c mpicc -c -g calcprf2.c mpicc -c -g calctree.c mpicc -c -g readmat.c mpicc -c -g alnscore.c mpicc -c -g random.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g parallel_compare.c mpicc -c -g prfalign.c mpicc -c -g stupid.c mpicc -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `clustalw-mpi-dbgsym' in `../clustalw-mpi-dbgsym_0.15-3build1_powerpc.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: PNG optimization for package clustalw-mpi took 0 s dpkg-deb: warning: 'debian/clustalw-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-mpi' in `../clustalw-mpi_0.15-3build1_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../clustalw-mpi_0.15-3build1_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131215-0616 Publishing debug debs. chroot-autobuild/build/buildd/clustalw-mpi_0.15-3build1_powerpc.deb: new debian package, version 2.0. size 91512 bytes: control archive= 1359 bytes. 1784 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-3build1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 446 Depends: libc6 (>= 2.7), libopenmpi1.6 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ chroot-autobuild/build/buildd/clustalw-mpi_0.15-3build1_powerpc.deb: drwxr-xr-x root/root 0 2013-12-15 06:16 ./ drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/ drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/share/ drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/share/doc/clustalw-mpi/ -rw-r--r-- root/root 1903 2013-09-08 00:21 ./usr/share/doc/clustalw-mpi/copyright -rw-r--r-- root/root 2602 2008-05-23 07:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1949 2013-12-15 06:04 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 12960 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 3834 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz -rw-r--r-- root/root 1994 2008-05-23 07:36 ./usr/share/doc/clustalw-mpi/History drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/share/man/ drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/share/man/man1/ -rw-r--r-- root/root 596 2013-12-15 06:16 ./usr/share/man/man1/clustalw-mpi.1.gz drwxr-xr-x root/root 0 2013-12-15 06:16 ./usr/bin/ -rwxr-xr-x root/root 388980 2013-12-15 06:16 ./usr/bin/clustalw-mpi clustalw-mpi_0.15-3build1_powerpc.changes: Format: 1.8 Date: Sun, 15 Dec 2013 01:04:18 -0500 Source: clustalw-mpi Binary: clustalw-mpi Architecture: powerpc Version: 0.15-3build1 Distribution: trusty-proposed Urgency: medium Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Logan Rosen Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Changes: clustalw-mpi (0.15-3build1) trusty; urgency=medium . * No-change rebuild for libopenmpi1.3 -> libopenmpi1.6 transition. Checksums-Sha1: f6b8baa275184f717dc76aadae0c4fd5216720ce 91512 clustalw-mpi_0.15-3build1_powerpc.deb Checksums-Sha256: 9266382271246b1fdb7c0450bfbcd6aeab4b302eea6f557dbf7b1c063cb51935 91512 clustalw-mpi_0.15-3build1_powerpc.deb Files: c31dec418420e225d19899c5dad94148 91512 non-free/science optional clustalw-mpi_0.15-3build1_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131215-0616 Build needed 00:00:10, 3016k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5337389'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5337389/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5337389'] Unmounting chroot for build PACKAGEBUILD-5337389... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5337389'] Removing build PACKAGEBUILD-5337389