RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux denneed02 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 dpkg-dev_1.17.5ubuntu4. Syncing the system clock with the buildd NTP service... 20 Feb 06:01:39 ntpdate[2433]: adjust time server 10.211.37.1 offset 0.000351 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5597235', '/home/buildd/filecache-default/1418c9e5f0eb143d9f77e4665c5b7c89c42011cc'] Unpacking chroot for build PACKAGEBUILD-5597235 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5597235'] Mounting chroot for build PACKAGEBUILD-5597235 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5597235', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5597235 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5597235', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-5597235 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Hit http://archive-team.internal trusty Release Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Ign http://archive-team.internal trusty/main ppc64el Packages/DiffIndex Get:3 http://ftpmaster.internal trusty Release [58.5 kB] Get:4 http://ftpmaster.internal trusty Release [58.5 kB] Get:5 http://ftpmaster.internal trusty/main ppc64el Packages [1223 kB] Ign http://archive-team.internal trusty/main Translation-en Hit http://archive-team.internal trusty/main ppc64el Packages Get:6 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:7 http://ftpmaster.internal trusty/universe ppc64el Packages [4976 kB] Get:8 http://ftpmaster.internal trusty/multiverse ppc64el Packages [72.1 kB] Get:9 http://ftpmaster.internal trusty/main Translation-en [762 kB] Get:10 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:11 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:12 http://ftpmaster.internal trusty/universe Translation-en [4059 kB] Get:13 http://ftpmaster.internal trusty/main ppc64el Packages [1226 kB] Get:14 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:15 http://ftpmaster.internal trusty/universe ppc64el Packages [5005 kB] Get:16 http://ftpmaster.internal trusty/multiverse ppc64el Packages [107 kB] Get:17 http://ftpmaster.internal trusty/main Translation-en [760 kB] Get:18 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:19 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:20 http://ftpmaster.internal trusty/universe Translation-en [4056 kB] Fetched 22.6 MB in 14s (1514 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files cpp-4.8 dash e2fslibs e2fsprogs g++-4.8 gcc-4.8 gcc-4.8-base gcc-4.9-base libasn1-8-heimdal libatomic1 libcomerr2 libgcc-4.8-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libroken18-heimdal libss2 libstdc++-4.8-dev libstdc++6 libwind0-heimdal linux-libc-dev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After this operation, 135 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files ppc64el 7.2ubuntu3 [44.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main dash ppc64el 0.5.7-4ubuntu1 [94.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs ppc64el 1.42.9-3ubuntu1 [185 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs ppc64el 1.42.9-3ubuntu1 [662 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 ppc64el 4.8.2-16ubuntu1 [28.8 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 ppc64el 4.8.2-16ubuntu1 [21.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 ppc64el 4.8.2-16ubuntu1 [6242 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 ppc64el 4.8.2-16ubuntu1 [4809 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 ppc64el 4.8.2-16ubuntu1 [4425 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 ppc64el 4.8.2-16ubuntu1 [7868 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.9-base ppc64el 4.9-20140217-0ubuntu1 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 ppc64el 1:4.9-20140217-0ubuntu1 [29.1 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev ppc64el 4.8.2-16ubuntu1 [1087 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev ppc64el 4.8.2-16ubuntu1 [245 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base ppc64el 4.8.2-16ubuntu1 [14.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 ppc64el 4.8.2-16ubuntu1 [270 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 ppc64el 1.42.9-3ubuntu1 [62.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libss2 ppc64el 1.42.9-3ubuntu1 [66.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libroken18-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libasn1-8-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [132 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libhcrypto4-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [90.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libheimbase1-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [28.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libwind0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [47.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libhx509-5-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [97.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-26-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [188 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libheimntlm0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [15.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi3-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [83.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main upstart ppc64el 1.11-0ubuntu4 [338 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev ppc64el 3.13.0-11.31 [753 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.1 MB in 17s (1171 kB/s) (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu3_ppc64el.deb ... Moving obsolete conffile /etc/update-motd.d/99-footer out of the way... Unpacking base-files (7.2ubuntu3) over (7.2ubuntu1) ... Setting up base-files (7.2ubuntu3) ... Removing obsolete conffile /etc/update-motd.d/99-footer ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../dash_0.5.7-4ubuntu1_ppc64el.deb ... Unpacking dash (0.5.7-4ubuntu1) over (0.5.7-3ubuntu1) ... Setting up dash (0.5.7-4ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fslibs:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fslibs:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fsprogs (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fsprogs (1.42.9-3ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libitm1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgomp1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../g++-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking g++-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../cpp-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking cpp-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libatomic1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.9-base_4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) over (4.9-20140213-0ubuntu2) ... Setting up gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) over (1:4.9-20140213-0ubuntu2) ... Setting up libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgcc-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8-base_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up libstdc++6:ppc64el (4.8.2-16ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libcomerr2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libcomerr2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libss2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libss2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libss2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libroken18-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libasn1-8-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhcrypto4-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimbase1-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libwind0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhx509-5-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libkrb5-26-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimntlm0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libgssapi3-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../upstart_1.11-0ubuntu4_ppc64el.deb ... Unpacking upstart (1.11-0ubuntu4) over (1.11-0ubuntu3) ... Preparing to unpack .../linux-libc-dev_3.13.0-11.31_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (3.13.0-11.31) over (3.13.0-8.28) ... Setting up libitm1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgomp1:ppc64el (4.8.2-16ubuntu1) ... Setting up cpp-4.8 (4.8.2-16ubuntu1) ... Setting up gcc-4.8 (4.8.2-16ubuntu1) ... Setting up libatomic1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up g++-4.8 (4.8.2-16ubuntu1) ... Setting up libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up upstart (1.11-0ubuntu4) ... Setting up linux-libc-dev:ppc64el (3.13.0-11.31) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5597235', 'ppc64el', 'trusty', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty', '--purpose=PRIMARY', '--architecture=ppc64el', '--comp=multiverse', 'clustalw-mpi_0.15-3build1.dsc'] Initiating build PACKAGEBUILD-5597235 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Automatic build of clustalw-mpi_0.15-3build1 on denneed02 by sbuild/ppc64el 1.170.5 Build started at 20140220-0602 ****************************************************************************** clustalw-mpi_0.15-3build1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), mpi-default-dev Checking for already installed source dependencies... debhelper: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libmpdec2 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libtorque2 libunistring0 libxml2 libxml2-dev man-db mime-support openmpi-common po-debconf python3 python3-minimal python3.4 python3.4-minimal zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff libhwloc-contrib-plugins pkg-config less www-browser libmail-box-perl python3-doc python3-tk python3.4-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libhwloc-plugins xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libmpdec2 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libtorque2 libunistring0 libxml2 libxml2-dev man-db mime-support mpi-default-dev openmpi-common po-debconf python3 python3-minimal python3.4 python3.4-minimal zlib1g-dev 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 13.9 MB of archives. After this operation, 65.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 ppc64el 2.1.0-4ubuntu1 [79.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 ppc64el 1:5.14-2ubuntu1 [194 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 ppc64el 1.0.1f-1ubuntu1 [762 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 ppc64el 0.18.3.1-1ubuntu2 [6748 B] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 ppc64el 2.39.90-0ubuntu1 [985 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpci3 ppc64el 1:3.2.1-1ubuntu2 [22.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 ppc64el 1.2.6-2 [22.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 ppc64el 2.9.1+dfsg1-3ubuntu3 [601 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main groff-base ppc64el 1.22.2-5 [1249 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils ppc64el 9.0.5ubuntu1 [173 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main man-db ppc64el 2.6.6-1 [847 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 ppc64el 0.6.8-2ubuntu1 [75.4 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libltdl7 ppc64el 2.4.2-1.7ubuntu1 [33.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 ppc64el 2.4.0-6 [83.9 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-minimal ppc64el 3.4~rc1-1build1 [440 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-stdlib ppc64el 3.4~rc1-1build1 [1972 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 ppc64el 0.9.3-5ubuntu3 [262 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main python3.4-minimal ppc64el 3.4~rc1-1build1 [1147 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/universe libhwloc5 ppc64el 1.8-1ubuntu1 [62.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main python3.4 ppc64el 3.4~rc1-1build1 [159 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal ppc64el 3.4~rc1-1 [23.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib ppc64el 3.4~rc1-1 [6976 B] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main python3 ppc64el 3.4~rc1-1 [8654 B] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20140128-1ubuntu2 [51.0 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main file ppc64el 1:5.14-2ubuntu1 [19.2 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base ppc64el 0.18.3.1-1ubuntu2 [47.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main gettext ppc64el 0.18.3.1-1ubuntu2 [840 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu38 [20.1 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu38 [7286 B] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131227ubuntu1 [604 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main zlib1g-dev ppc64el 1:1.2.8.dfsg-1ubuntu1 [166 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libpci-dev ppc64el 1:3.2.1-1ubuntu2 [40.7 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/universe libtorque2 ppc64el 2.4.16+dfsg-1.3ubuntu1 [72.0 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libxml2-dev ppc64el 2.9.1+dfsg1-3ubuntu3 [694 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/universe openmpi-common all 1.6.5-8 [101 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/universe libhwloc-dev ppc64el 1.8-1ubuntu1 [121 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libibverbs1 ppc64el 1.1.7-1ubuntu1 [22.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libibverbs-dev ppc64el 1.1.7-1ubuntu1 [68.5 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/universe libopenmpi1.6 ppc64el 1.6.5-8 [1193 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/universe libopenmpi-dev ppc64el 1.6.5-8 [380 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/universe mpi-default-dev ppc64el 1.0.2ubuntu1 [3832 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.9 MB in 15s (924 kB/s) Selecting previously unselected package libexpat1:ppc64el. (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.14-2ubuntu1) ... Selecting previously unselected package libssl1.0.0:ppc64el. Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu1_ppc64el.deb ... Unpacking libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:ppc64el. Preparing to unpack .../libasprintf0c2_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.39.90-0ubuntu1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.39.90-0ubuntu1) ... Selecting previously unselected package libpci3:ppc64el. Preparing to unpack .../libpci3_1%3a3.2.1-1ubuntu2_ppc64el.deb ... Unpacking libpci3:ppc64el (1:3.2.1-1ubuntu2) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../libpipeline1_1.2.6-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.2.6-2) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-5_ppc64el.deb ... Unpacking groff-base (1.22.2-5) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.6-1_ppc64el.deb ... Unpacking man-db (2.6.6-1) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../libcroco3_0.6.8-2ubuntu1_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.8-2ubuntu1) ... Selecting previously unselected package libltdl7:ppc64el. Preparing to unpack .../libltdl7_2.4.2-1.7ubuntu1_ppc64el.deb ... Unpacking libltdl7:ppc64el (2.4.2-1.7ubuntu1) ... Selecting previously unselected package libmpdec2:ppc64el. Preparing to unpack .../libmpdec2_2.4.0-6_ppc64el.deb ... Unpacking libmpdec2:ppc64el (2.4.0-6) ... Selecting previously unselected package libpython3.4-minimal:ppc64el. Preparing to unpack .../libpython3.4-minimal_3.4~rc1-1build1_ppc64el.deb ... Unpacking libpython3.4-minimal:ppc64el (3.4~rc1-1build1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.54ubuntu1_all.deb ... Unpacking mime-support (3.54ubuntu1) ... Selecting previously unselected package libpython3.4-stdlib:ppc64el. Preparing to unpack .../libpython3.4-stdlib_3.4~rc1-1build1_ppc64el.deb ... Unpacking libpython3.4-stdlib:ppc64el (3.4~rc1-1build1) ... Selecting previously unselected package libunistring0:ppc64el. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_ppc64el.deb ... Unpacking libunistring0:ppc64el (0.9.3-5ubuntu3) ... Selecting previously unselected package python3.4-minimal. Preparing to unpack .../python3.4-minimal_3.4~rc1-1build1_ppc64el.deb ... Unpacking python3.4-minimal (3.4~rc1-1build1) ... Selecting previously unselected package libhwloc5:ppc64el. Preparing to unpack .../libhwloc5_1.8-1ubuntu1_ppc64el.deb ... Unpacking libhwloc5:ppc64el (1.8-1ubuntu1) ... Selecting previously unselected package python3.4. Preparing to unpack .../python3.4_3.4~rc1-1build1_ppc64el.deb ... Unpacking python3.4 (3.4~rc1-1build1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../python3-minimal_3.4~rc1-1_ppc64el.deb ... Unpacking python3-minimal (3.4~rc1-1) ... Selecting previously unselected package libpython3-stdlib:ppc64el. 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Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ... Unpacking po-debconf (1.0.16+nmu2ubuntu1) ... Selecting previously unselected package apparmor-easyprof. Preparing to unpack .../apparmor-easyprof_2.8.0-0ubuntu38_all.deb ... Unpacking apparmor-easyprof (2.8.0-0ubuntu38) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.0-0ubuntu38_all.deb ... Unpacking dh-apparmor (2.8.0-0ubuntu38) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20131227ubuntu1_all.deb ... Unpacking debhelper (9.20131227ubuntu1) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.8.dfsg-1ubuntu1) ... Selecting previously unselected package libpci-dev. Preparing to unpack .../libpci-dev_1%3a3.2.1-1ubuntu2_ppc64el.deb ... Unpacking libpci-dev (1:3.2.1-1ubuntu2) ... Selecting previously unselected package libtorque2. Preparing to unpack .../libtorque2_2.4.16+dfsg-1.3ubuntu1_ppc64el.deb ... Unpacking libtorque2 (2.4.16+dfsg-1.3ubuntu1) ... Selecting previously unselected package libxml2-dev:ppc64el. Preparing to unpack .../libxml2-dev_2.9.1+dfsg1-3ubuntu3_ppc64el.deb ... Unpacking libxml2-dev:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../openmpi-common_1.6.5-8_all.deb ... Unpacking openmpi-common (1.6.5-8) ... Selecting previously unselected package libhwloc-dev:ppc64el. Preparing to unpack .../libhwloc-dev_1.8-1ubuntu1_ppc64el.deb ... Unpacking libhwloc-dev:ppc64el (1.8-1ubuntu1) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.1.7-1ubuntu1_ppc64el.deb ... Unpacking libibverbs1 (1.1.7-1ubuntu1) ... Selecting previously unselected package libibverbs-dev. Preparing to unpack .../libibverbs-dev_1.1.7-1ubuntu1_ppc64el.deb ... Unpacking libibverbs-dev (1.1.7-1ubuntu1) ... Selecting previously unselected package libopenmpi1.6. Preparing to unpack .../libopenmpi1.6_1.6.5-8_ppc64el.deb ... Unpacking libopenmpi1.6 (1.6.5-8) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../libopenmpi-dev_1.6.5-8_ppc64el.deb ... Unpacking libopenmpi-dev (1.6.5-8) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../mpi-default-dev_1.0.2ubuntu1_ppc64el.deb ... Unpacking mpi-default-dev (1.0.2ubuntu1) ... Setting up libexpat1:ppc64el (2.1.0-4ubuntu1) ... Setting up libmagic1:ppc64el (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Setting up libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:ppc64el (2.39.90-0ubuntu1) ... No schema files found: doing nothing. Setting up libpci3:ppc64el (1:3.2.1-1ubuntu2) ... Setting up libpipeline1:ppc64el (1.2.6-2) ... Setting up libxml2:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:ppc64el (0.6.8-2ubuntu1) ... Setting up libltdl7:ppc64el (2.4.2-1.7ubuntu1) ... Setting up libmpdec2:ppc64el (2.4.0-6) ... Setting up libpython3.4-minimal:ppc64el (3.4~rc1-1build1) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.4-stdlib:ppc64el (3.4~rc1-1build1) ... Setting up libunistring0:ppc64el (0.9.3-5ubuntu3) ... Setting up python3.4-minimal (3.4~rc1-1build1) ... Setting up libhwloc5:ppc64el (1.8-1ubuntu1) ... Setting up python3.4 (3.4~rc1-1build1) ... Setting up python3-minimal (3.4~rc1-1) ... Exception ignored in: > Traceback (most recent call last): File "/usr/lib/python3.4/subprocess.py", line 897, in __del__ TypeError: 'NoneType' object is not callable Setting up libpython3-stdlib:ppc64el (3.4~rc1-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.8.dfsg-1ubuntu1) ... Setting up libpci-dev (1:3.2.1-1ubuntu2) ... Setting up libtorque2 (2.4.16+dfsg-1.3ubuntu1) ... Setting up libxml2-dev:ppc64el (2.9.1+dfsg1-3ubuntu3) ... Setting up openmpi-common (1.6.5-8) ... Setting up libhwloc-dev:ppc64el (1.8-1ubuntu1) ... Setting up libibverbs1 (1.1.7-1ubuntu1) ... Setting up libibverbs-dev (1.1.7-1ubuntu1) ... Setting up libopenmpi1.6 (1.6.5-8) ... Setting up libopenmpi-dev (1.6.5-8) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.2ubuntu1) ... Setting up python3 (3.4~rc1-1) ... running python rtupdate hooks for python3.4... running python post-rtupdate hooks for python3.4... Setting up dh-python (1.20140128-1ubuntu2) ... Setting up apparmor-easyprof (2.8.0-0ubuntu38) ... Setting up dh-apparmor (2.8.0-0ubuntu38) ... Setting up debhelper (9.20131227ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu7 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu4 gcc-4.8_4.8.2-16ubuntu1 g++-4.8_4.8.2-16ubuntu1 binutils_2.24-2ubuntu3.1 libstdc++-4.8-dev_4.8.2-16ubuntu1 libstdc++6_4.8.2-16ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sun Dec 15 06:04:40 2013 UTC using RSA key ID EA330543 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-3build1.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-3build1.debian.tar.gz dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-3build1 dpkg-buildpackage: source distribution trusty dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture ppc64el /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' /bin/rm -f *.o make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c mpicc -c -g sequence.c mpicc -c -g showpair.c mpicc -c -g malign.c mpicc -c -g malign_mpi_progressive.c malign_mpi_progressive.c: In function 'key_compare': malign_mpi_progressive.c:843:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] v1 = *(int *) (*((int *) e1)); ^ malign_mpi_progressive.c:844:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] v2 = *(int *) (*((int *) e2)); ^ mpicc -c -g malign_mpi_pdiff.c mpicc -c -g util.c mpicc -DSERIAL_NJTREE -c -g trees.c mpicc -c -g gcgcheck.c mpicc -c -g prfalign_mpi_pdiff.c mpicc -c -g prfalign_mpi_progressive.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g pairalign_new.c mpicc -c -g calcgapcoeff.c mpicc -c -g calcprf1.c mpicc -c -g calcprf2.c mpicc -c -g calctree.c mpicc -c -g readmat.c mpicc -c -g alnscore.c mpicc -c -g random.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g parallel_compare.c mpicc -c -g prfalign.c mpicc -c -g stupid.c mpicc -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `clustalw-mpi-dbgsym' in `../clustalw-mpi-dbgsym_0.15-3build1_ppc64el.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 119 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: PNG optimization for package clustalw-mpi took 0 s dpkg-deb: warning: 'debian/clustalw-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-mpi' in `../clustalw-mpi_0.15-3build1_ppc64el.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../clustalw-mpi_0.15-3build1_ppc64el.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140220-0602 Publishing debug debs. chroot-autobuild/build/buildd/clustalw-mpi_0.15-3build1_ppc64el.deb: new debian package, version 2.0. size 99146 bytes: control archive=1357 bytes. 1785 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-3build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 548 Depends: libc6 (>= 2.17), libopenmpi1.6 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ chroot-autobuild/build/buildd/clustalw-mpi_0.15-3build1_ppc64el.deb: drwxr-xr-x root/root 0 2014-02-20 06:02 ./ drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/ drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/bin/ -rwxr-xr-x root/root 494336 2014-02-20 06:02 ./usr/bin/clustalw-mpi drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/share/ drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/share/man/ drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/share/man/man1/ -rw-r--r-- root/root 596 2014-02-20 06:02 ./usr/share/man/man1/clustalw-mpi.1.gz drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/share/doc/clustalw-mpi/ -rw-r--r-- root/root 2602 2008-05-23 03:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1994 2008-05-23 03:36 ./usr/share/doc/clustalw-mpi/History -rw-r--r-- root/root 1903 2013-09-07 20:21 ./usr/share/doc/clustalw-mpi/copyright drwxr-xr-x root/root 0 2014-02-20 06:02 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 12960 2003-04-06 21:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 3834 2003-04-06 21:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz -rw-r--r-- root/root 1949 2013-12-15 01:04 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz clustalw-mpi_0.15-3build1_ppc64el.changes: Format: 1.8 Date: Sun, 15 Dec 2013 01:04:18 -0500 Source: clustalw-mpi Binary: clustalw-mpi Architecture: ppc64el Version: 0.15-3build1 Distribution: trusty Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Logan Rosen Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Changes: clustalw-mpi (0.15-3build1) trusty; urgency=medium . * No-change rebuild for libopenmpi1.3 -> libopenmpi1.6 transition. Checksums-Sha1: e955a6c6e12500f70b31e1c7773553fdcf934430 99146 clustalw-mpi_0.15-3build1_ppc64el.deb Checksums-Sha256: 3c2dbb937f86b18b5906d8f8d2f74980f6ed475ba6bdb0ba75bbaca88da57545 99146 clustalw-mpi_0.15-3build1_ppc64el.deb Files: 068daf772defff9870071fea9f9f6b45 99146 non-free/science optional clustalw-mpi_0.15-3build1_ppc64el.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140220-0602 Build needed 00:00:10, 3796k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5597235'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5597235/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5597235'] Unmounting chroot for build PACKAGEBUILD-5597235... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5597235'] Removing build PACKAGEBUILD-5597235