RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux sulfur 3.2.0-55-powerpc64-smp #85-Ubuntu SMP Wed Oct 2 15:28:59 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.3. Syncing the system clock with the buildd NTP service... 3 May 06:45:56 ntpdate[31888]: adjust time server 10.211.37.1 offset 0.000033 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5970945', '/home/buildd/filecache-default/50636025247bf1b1e8d6f0848ab4f73fc9c05cbb'] Unpacking chroot for build PACKAGEBUILD-5970945 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5970945'] Mounting chroot for build PACKAGEBUILD-5970945 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5970945', 'deb http://ftpmaster.internal/ubuntu utopic main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5970945 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5970945', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-5970945 Ign http://archive-team.internal utopic InRelease Ign http://ftpmaster.internal utopic InRelease Ign http://archive-team.internal utopic Release.gpg Ign http://ftpmaster.internal utopic-security InRelease Get:1 http://archive-team.internal utopic Release [744 B] Ign http://ftpmaster.internal utopic-updates InRelease Ign http://ftpmaster.internal utopic-proposed InRelease Get:2 http://ftpmaster.internal utopic Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal utopic Release [58.5 kB] Get:7 http://archive-team.internal utopic/main powerpc Packages Get:8 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:9 http://ftpmaster.internal utopic-updates Release [58.5 kB] Ign http://archive-team.internal utopic/main Translation-en Get:10 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Get:11 http://ftpmaster.internal utopic/main powerpc Packages [1300 kB] Get:12 http://ftpmaster.internal utopic/restricted powerpc Packages [14 B] Get:13 http://ftpmaster.internal utopic/universe powerpc Packages [5842 kB] Get:14 http://ftpmaster.internal utopic/multiverse powerpc Packages [114 kB] Get:15 http://ftpmaster.internal utopic/main Translation-en [767 kB] Get:16 http://ftpmaster.internal utopic/multiverse Translation-en [102 kB] Get:17 http://ftpmaster.internal utopic/restricted Translation-en [3457 B] Get:18 http://ftpmaster.internal utopic/universe Translation-en [4162 kB] Get:19 http://ftpmaster.internal utopic-security/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal utopic-security/restricted powerpc Packages [14 B] Get:21 http://ftpmaster.internal utopic-security/universe powerpc Packages [14 B] Get:22 http://ftpmaster.internal utopic-security/multiverse powerpc Packages [14 B] Get:23 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal utopic-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal utopic-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal utopic-updates/main powerpc Packages [14 B] Get:28 http://ftpmaster.internal utopic-updates/restricted powerpc Packages [14 B] Get:29 http://ftpmaster.internal utopic-updates/universe powerpc Packages [14 B] Get:30 http://ftpmaster.internal utopic-updates/multiverse powerpc Packages [14 B] Get:31 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal utopic-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal utopic-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal utopic-proposed/main powerpc Packages [24.8 kB] Get:36 http://ftpmaster.internal utopic-proposed/restricted powerpc Packages [14 B] Get:37 http://ftpmaster.internal utopic-proposed/universe powerpc Packages [158 kB] Get:38 http://ftpmaster.internal utopic-proposed/multiverse powerpc Packages [630 B] Get:39 http://ftpmaster.internal utopic-proposed/main Translation-en [14.4 kB] Get:40 http://ftpmaster.internal utopic-proposed/multiverse Translation-en [1695 B] Get:41 http://ftpmaster.internal utopic-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal utopic-proposed/universe Translation-en [90.6 kB] Fetched 12.8 MB in 9s (1350 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: busybox-initramfs initramfs-tools initramfs-tools-bin initscripts libcgmanager0 libdbus-1-3 libpam-modules libpam-modules-bin libpam-runtime libpam0g libssl1.0.0 login openssl passwd sysv-rc sysvinit-utils 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 2987 kB of archives. After this operation, 13.3 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main login powerpc 1:4.1.5.1-1.1ubuntu1 [297 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libpam0g powerpc 1.1.8-3ubuntu1 [55.3 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules-bin powerpc 1.1.8-3ubuntu1 [29.0 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules powerpc 1.1.8-3ubuntu1 [224 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libssl1.0.0 powerpc 1.0.1f-1ubuntu3 [693 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libdbus-1-3 powerpc 1.6.18-0ubuntu5 [115 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libpam-runtime all 1.1.8-3ubuntu1 [39.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main passwd powerpc 1:4.1.5.1-1.1ubuntu1 [708 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic-proposed/main sysvinit-utils powerpc 2.88dsf-41ubuntu7 [49.7 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic-proposed/main sysv-rc all 2.88dsf-41ubuntu7 [37.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main busybox-initramfs powerpc 1:1.22.0-6ubuntu1 [171 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools all 0.103ubuntu5 [44.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools-bin powerpc 0.103ubuntu5 [8746 B] Get:14 http://ftpmaster.internal/ubuntu/ utopic-proposed/main initscripts powerpc 2.88dsf-41ubuntu7 [29.0 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libcgmanager0 powerpc 0.25-0ubuntu5 [20.5 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main openssl powerpc 1.0.1f-1ubuntu3 [466 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2987 kB in 0s (11.8 MB/s) (Reading database ... 11721 files and directories currently installed.) Preparing to unpack .../login_1%3a4.1.5.1-1.1ubuntu1_powerpc.deb ... Unpacking login (1:4.1.5.1-1.1ubuntu1) over (1:4.1.5.1-1ubuntu9) ... Setting up login (1:4.1.5.1-1.1ubuntu1) ... (Reading database ... 11721 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3ubuntu1_powerpc.deb ... Unpacking libpam0g:powerpc (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam0g:powerpc (1.1.8-3ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... (Reading database ... 11721 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3ubuntu1_powerpc.deb ... Unpacking libpam-modules-bin (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam-modules-bin (1.1.8-3ubuntu1) ... (Reading database ... 11721 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3ubuntu1_powerpc.deb ... Unpacking libpam-modules:powerpc (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam-modules:powerpc (1.1.8-3ubuntu1) ... (Reading database ... 11722 files and directories currently installed.) Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu3_powerpc.deb ... Unpacking libssl1.0.0:powerpc (1.0.1f-1ubuntu3) over (1.0.1f-1ubuntu2) ... Preparing to unpack .../libdbus-1-3_1.6.18-0ubuntu5_powerpc.deb ... Unpacking libdbus-1-3:powerpc (1.6.18-0ubuntu5) over (1.6.18-0ubuntu4) ... Preparing to unpack .../libpam-runtime_1.1.8-3ubuntu1_all.deb ... Unpacking libpam-runtime (1.1.8-3ubuntu1) over (1.1.8-1ubuntu2) ... Setting up libpam-runtime (1.1.8-3ubuntu1) ... (Reading database ... 11722 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.1.5.1-1.1ubuntu1_powerpc.deb ... Unpacking passwd (1:4.1.5.1-1.1ubuntu1) over (1:4.1.5.1-1ubuntu9) ... Setting up passwd (1:4.1.5.1-1.1ubuntu1) ... (Reading database ... 11722 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-41ubuntu7_powerpc.deb ... Unpacking sysvinit-utils (2.88dsf-41ubuntu7) over (2.88dsf-41ubuntu6) ... Preparing to unpack .../sysv-rc_2.88dsf-41ubuntu7_all.deb ... Unpacking sysv-rc (2.88dsf-41ubuntu7) over (2.88dsf-41ubuntu6) ... Setting up sysvinit-utils (2.88dsf-41ubuntu7) ... Setting up sysv-rc (2.88dsf-41ubuntu7) ... (Reading database ... 11722 files and directories currently installed.) Preparing to unpack .../busybox-initramfs_1%3a1.22.0-6ubuntu1_powerpc.deb ... Unpacking busybox-initramfs (1:1.22.0-6ubuntu1) over (1:1.22.0-5ubuntu1) ... Preparing to unpack .../initramfs-tools_0.103ubuntu5_all.deb ... Unpacking initramfs-tools (0.103ubuntu5) over (0.103ubuntu4) ... Preparing to unpack .../initramfs-tools-bin_0.103ubuntu5_powerpc.deb ... Unpacking initramfs-tools-bin (0.103ubuntu5) over (0.103ubuntu4) ... Preparing to unpack .../initscripts_2.88dsf-41ubuntu7_powerpc.deb ... Unpacking initscripts (2.88dsf-41ubuntu7) over (2.88dsf-41ubuntu6) ... Preparing to unpack .../libcgmanager0_0.25-0ubuntu5_powerpc.deb ... Unpacking libcgmanager0:powerpc (0.25-0ubuntu5) over (0.25-0ubuntu4) ... Preparing to unpack .../openssl_1.0.1f-1ubuntu3_powerpc.deb ... Unpacking openssl (1.0.1f-1ubuntu3) over (1.0.1f-1ubuntu2) ... Setting up libssl1.0.0:powerpc (1.0.1f-1ubuntu3) ... Setting up libdbus-1-3:powerpc (1.6.18-0ubuntu5) ... Setting up busybox-initramfs (1:1.22.0-6ubuntu1) ... Setting up initramfs-tools-bin (0.103ubuntu5) ... Setting up initramfs-tools (0.103ubuntu5) ... update-initramfs: deferring update (trigger activated) Setting up initscripts (2.88dsf-41ubuntu7) ... Installing new version of config file /etc/init.d/ondemand ... Setting up libcgmanager0:powerpc (0.25-0ubuntu5) ... Setting up openssl (1.0.1f-1ubuntu3) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for initramfs-tools (0.103ubuntu5) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5970945', 'powerpc', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=multiverse', 'clustalw-mpi_0.15-3build2.dsc'] Initiating build PACKAGEBUILD-5970945 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-55-powerpc64-smp #85-Ubuntu SMP Wed Oct 2 15:28:59 UTC 2013 ppc Automatic build of clustalw-mpi_0.15-3build2 on sulfur by sbuild/powerpc 1.170.5 Build started at 20140503-0646 ****************************************************************************** clustalw-mpi_0.15-3build2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), mpi-default-dev Checking for already installed source dependencies... debhelper: missing mpi-default-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper mpi-default-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcr0 libcroco3 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libtorque2 libunistring0 libxml2 libxml2-dev man-db openmpi-common po-debconf zlib1g-dev Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff blcr-dkms libhwloc-contrib-plugins pkg-config less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libhwloc-plugins xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcr0 libcroco3 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libltdl7 libmagic1 libnuma1 libopenmpi-dev libopenmpi1.6 libpci-dev libpci3 libpipeline1 libtorque2 libunistring0 libxml2 libxml2-dev man-db mpi-default-dev openmpi-common po-debconf zlib1g-dev 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 8594 kB of archives. After this operation, 38.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 powerpc 1:5.14-2ubuntu3 [182 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 powerpc 0.18.3.2-1ubuntu1 [6484 B] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 powerpc 2.40.0-3 [929 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libnuma1 powerpc 2.0.9~rc5-1ubuntu2 [18.8 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libpci3 powerpc 1:3.2.1-1ubuntu6 [24.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 powerpc 1.3.0-1 [22.0 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 powerpc 2.9.1+dfsg1-3ubuntu4 [473 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main groff-base powerpc 1.22.2-5 [1101 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main man-db powerpc 2.6.7.1-1 [833 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 powerpc 0.6.8-2ubuntu1 [70.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libltdl7 powerpc 2.4.2-1.7ubuntu1 [33.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 powerpc 0.9.3-5ubuntu3 [252 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/universe libhwloc5 powerpc 1.8-1ubuntu1 [62.3 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main file powerpc 1:5.14-2ubuntu3 [18.7 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base powerpc 0.18.3.2-1ubuntu1 [45.0 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main gettext powerpc 0.18.3.2-1ubuntu1 [781 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.95~2430-0ubuntu5 [11.3 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20131227ubuntu1 [604 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/universe libcr0 powerpc 0.8.5-2.1 [17.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev powerpc 1:1.2.8.dfsg-1ubuntu1 [184 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libpci-dev powerpc 1:3.2.1-1ubuntu6 [40.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/universe libtorque2 powerpc 2.4.16+dfsg-1.3ubuntu1 [68.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libxml2-dev powerpc 2.9.1+dfsg1-3ubuntu4 [523 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/universe openmpi-common all 1.6.5-8 [101 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/universe libhwloc-dev powerpc 1.8-1ubuntu1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libibverbs1 powerpc 1.1.7-1ubuntu1 [21.8 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libibverbs-dev powerpc 1.1.7-1ubuntu1 [66.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/universe libopenmpi1.6 powerpc 1.6.5-8 [1165 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/universe libopenmpi-dev powerpc 1.6.5-8 [378 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic-proposed/universe mpi-default-dev powerpc 1.0.2+nmu1ubuntu1 [3720 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 8594 kB in 0s (8766 kB/s) Selecting previously unselected package libmagic1:powerpc. (Reading database ... 11722 files and directories currently installed.) Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu3_powerpc.deb ... Unpacking libmagic1:powerpc (1:5.14-2ubuntu3) ... Selecting previously unselected package libasprintf0c2:powerpc. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_powerpc.deb ... Unpacking libasprintf0c2:powerpc (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:powerpc. Preparing to unpack .../libglib2.0-0_2.40.0-3_powerpc.deb ... Unpacking libglib2.0-0:powerpc (2.40.0-3) ... Selecting previously unselected package libnuma1:powerpc. Preparing to unpack .../libnuma1_2.0.9~rc5-1ubuntu2_powerpc.deb ... Unpacking libnuma1:powerpc (2.0.9~rc5-1ubuntu2) ... Selecting previously unselected package libpci3:powerpc. Preparing to unpack .../libpci3_1%3a3.2.1-1ubuntu6_powerpc.deb ... Unpacking libpci3:powerpc (1:3.2.1-1ubuntu6) ... Selecting previously unselected package libpipeline1:powerpc. Preparing to unpack .../libpipeline1_1.3.0-1_powerpc.deb ... Unpacking libpipeline1:powerpc (1.3.0-1) ... Selecting previously unselected package libxml2:powerpc. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu4_powerpc.deb ... Unpacking libxml2:powerpc (2.9.1+dfsg1-3ubuntu4) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-5_powerpc.deb ... Unpacking groff-base (1.22.2-5) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_powerpc.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_powerpc.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package libcroco3:powerpc. Preparing to unpack .../libcroco3_0.6.8-2ubuntu1_powerpc.deb ... Unpacking libcroco3:powerpc (0.6.8-2ubuntu1) ... Selecting previously unselected package libltdl7:powerpc. Preparing to unpack .../libltdl7_2.4.2-1.7ubuntu1_powerpc.deb ... Unpacking libltdl7:powerpc (2.4.2-1.7ubuntu1) ... Selecting previously unselected package libunistring0:powerpc. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_powerpc.deb ... Unpacking libunistring0:powerpc (0.9.3-5ubuntu3) ... Selecting previously unselected package libhwloc5:powerpc. Preparing to unpack .../libhwloc5_1.8-1ubuntu1_powerpc.deb ... Unpacking libhwloc5:powerpc (1.8-1ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.14-2ubuntu3_powerpc.deb ... Unpacking file (1:5.14-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.2-1ubuntu1_powerpc.deb ... Unpacking gettext-base (0.18.3.2-1ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.2-1ubuntu1_powerpc.deb ... Unpacking gettext (0.18.3.2-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ... Unpacking po-debconf (1.0.16+nmu2ubuntu1) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.95~2430-0ubuntu5_all.deb ... Unpacking dh-apparmor (2.8.95~2430-0ubuntu5) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20131227ubuntu1_all.deb ... Unpacking debhelper (9.20131227ubuntu1) ... Selecting previously unselected package libcr0. Preparing to unpack .../libcr0_0.8.5-2.1_powerpc.deb ... Unpacking libcr0 (0.8.5-2.1) ... Selecting previously unselected package zlib1g-dev:powerpc. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_powerpc.deb ... Unpacking zlib1g-dev:powerpc (1:1.2.8.dfsg-1ubuntu1) ... Selecting previously unselected package libpci-dev. Preparing to unpack .../libpci-dev_1%3a3.2.1-1ubuntu6_powerpc.deb ... Unpacking libpci-dev (1:3.2.1-1ubuntu6) ... Selecting previously unselected package libtorque2. Preparing to unpack .../libtorque2_2.4.16+dfsg-1.3ubuntu1_powerpc.deb ... Unpacking libtorque2 (2.4.16+dfsg-1.3ubuntu1) ... Selecting previously unselected package libxml2-dev:powerpc. Preparing to unpack .../libxml2-dev_2.9.1+dfsg1-3ubuntu4_powerpc.deb ... Unpacking libxml2-dev:powerpc (2.9.1+dfsg1-3ubuntu4) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../openmpi-common_1.6.5-8_all.deb ... Unpacking openmpi-common (1.6.5-8) ... Selecting previously unselected package libhwloc-dev:powerpc. Preparing to unpack .../libhwloc-dev_1.8-1ubuntu1_powerpc.deb ... Unpacking libhwloc-dev:powerpc (1.8-1ubuntu1) ... Selecting previously unselected package libibverbs1. Preparing to unpack .../libibverbs1_1.1.7-1ubuntu1_powerpc.deb ... Unpacking libibverbs1 (1.1.7-1ubuntu1) ... Selecting previously unselected package libibverbs-dev. Preparing to unpack .../libibverbs-dev_1.1.7-1ubuntu1_powerpc.deb ... Unpacking libibverbs-dev (1.1.7-1ubuntu1) ... Selecting previously unselected package libopenmpi1.6. Preparing to unpack .../libopenmpi1.6_1.6.5-8_powerpc.deb ... Unpacking libopenmpi1.6 (1.6.5-8) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../libopenmpi-dev_1.6.5-8_powerpc.deb ... Unpacking libopenmpi-dev (1.6.5-8) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../mpi-default-dev_1.0.2+nmu1ubuntu1_powerpc.deb ... Unpacking mpi-default-dev (1.0.2+nmu1ubuntu1) ... Setting up libmagic1:powerpc (1:5.14-2ubuntu3) ... Setting up libasprintf0c2:powerpc (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:powerpc (2.40.0-3) ... No schema files found: doing nothing. Setting up libnuma1:powerpc (2.0.9~rc5-1ubuntu2) ... Setting up libpci3:powerpc (1:3.2.1-1ubuntu6) ... Setting up libpipeline1:powerpc (1.3.0-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-3ubuntu4) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:powerpc (0.6.8-2ubuntu1) ... Setting up libltdl7:powerpc (2.4.2-1.7ubuntu1) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu3) ... Setting up libhwloc5:powerpc (1.8-1ubuntu1) ... Setting up file (1:5.14-2ubuntu3) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ... Setting up debhelper (9.20131227ubuntu1) ... Setting up libcr0 (0.8.5-2.1) ... Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-1ubuntu1) ... Setting up libpci-dev (1:3.2.1-1ubuntu6) ... Setting up libtorque2 (2.4.16+dfsg-1.3ubuntu1) ... Setting up libxml2-dev:powerpc (2.9.1+dfsg1-3ubuntu4) ... Setting up openmpi-common (1.6.5-8) ... Setting up libhwloc-dev:powerpc (1.8-1ubuntu1) ... Setting up libibverbs1 (1.1.7-1ubuntu1) ... Setting up libibverbs-dev (1.1.7-1ubuntu1) ... Setting up libopenmpi1.6 (1.6.5-8) ... Setting up libopenmpi-dev (1.6.5-8) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.2+nmu1ubuntu1) ... Processing triggers for libc-bin (2.19-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_3.81-8.2ubuntu3 dpkg-dev_1.17.9ubuntu1 gcc-4.8_4.8.2-21ubuntu1 g++-4.8_4.8.2-21ubuntu1 binutils_2.24.51.20140425-0ubuntu2 libstdc++-4.8-dev_4.8.2-21ubuntu1 libstdc++6_4.9.0-1ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Fri May 2 14:32:37 2014 UTC using RSA key ID F1ED1345 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-3build2.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-3build2.debian.tar.xz dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-3build2 dpkg-buildpackage: source distribution utopic dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' /bin/rm -f *.o make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-mpi-0.15' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c mpicc -c -g sequence.c mpicc -c -g showpair.c mpicc -c -g malign.c mpicc -c -g malign_mpi_progressive.c mpicc -c -g malign_mpi_pdiff.c mpicc -c -g util.c mpicc -DSERIAL_NJTREE -c -g trees.c mpicc -c -g gcgcheck.c mpicc -c -g prfalign_mpi_pdiff.c mpicc -c -g prfalign_mpi_progressive.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g pairalign_new.c mpicc -c -g calcgapcoeff.c mpicc -c -g calcprf1.c mpicc -c -g calcprf2.c mpicc -c -g calctree.c mpicc -c -g readmat.c mpicc -c -g alnscore.c mpicc -c -g random.c mpicc -DDYNAMIC_SCHEDULING_PAIRALIGN -c -g parallel_compare.c mpicc -c -g prfalign.c mpicc -c -g stupid.c mpicc -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm make[1]: Leaving directory `/build/buildd/clustalw-mpi-0.15' dh_auto_test -a /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `clustalw-mpi-dbgsym' in `../clustalw-mpi-dbgsym_0.15-3build2_powerpc.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 121 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: PNG optimization for package clustalw-mpi took 0 s dpkg-deb: warning: 'debian/clustalw-mpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-mpi' in `../clustalw-mpi_0.15-3build2_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../clustalw-mpi_0.15-3build2_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140503-0647 Publishing debug debs. chroot-autobuild/build/buildd/clustalw-mpi_0.15-3build2_powerpc.deb: new debian package, version 2.0. size 91586 bytes: control archive= 1434 bytes. 1784 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-3build2 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 446 Depends: libc6 (>= 2.7), libopenmpi1.6 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ chroot-autobuild/build/buildd/clustalw-mpi_0.15-3build2_powerpc.deb: drwxr-xr-x root/root 0 2014-05-03 06:47 ./ drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/ drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/share/ drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/share/man/ drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/share/man/man1/ -rw-r--r-- root/root 596 2014-05-03 06:47 ./usr/share/man/man1/clustalw-mpi.1.gz drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/share/doc/clustalw-mpi/ -rw-r--r-- root/root 1994 2008-05-23 07:36 ./usr/share/doc/clustalw-mpi/History -rw-r--r-- root/root 1903 2013-09-08 00:21 ./usr/share/doc/clustalw-mpi/copyright drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 3834 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz -rw-r--r-- root/root 12960 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 2602 2008-05-23 07:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1998 2014-05-02 14:32 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz drwxr-xr-x root/root 0 2014-05-03 06:47 ./usr/bin/ -rwxr-xr-x root/root 388924 2014-05-03 06:47 ./usr/bin/clustalw-mpi clustalw-mpi_0.15-3build2_powerpc.changes: Format: 1.8 Date: Fri, 02 May 2014 10:32:11 -0400 Source: clustalw-mpi Binary: clustalw-mpi Architecture: powerpc Version: 0.15-3build2 Distribution: utopic-proposed Urgency: medium Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Logan Rosen Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Changes: clustalw-mpi (0.15-3build2) utopic; urgency=medium . * No-change rebuild to drop mpich dependency on arm64. Checksums-Sha1: d168aa9f7d16389cb384c359ade4e898642e5d3b 91586 clustalw-mpi_0.15-3build2_powerpc.deb Checksums-Sha256: 7cd6879c99be1125a0f032b91ddab82aa2cd33947670a42749baefd7703ea973 91586 clustalw-mpi_0.15-3build2_powerpc.deb Files: b71b058f47ff4dbcdde06e7951952bd1 91586 non-free/science optional clustalw-mpi_0.15-3build2_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140503-0647 Build needed 00:00:19, 3076k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5970945'] Scanning for processes to kill in build /srv/home/buildd/build-PACKAGEBUILD-5970945/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5970945'] Unmounting chroot for build PACKAGEBUILD-5970945... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5970945'] Removing build PACKAGEBUILD-5970945