RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux z13-004 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x Buildd toolchain package versions: launchpad-buildd_136 python-lpbuildd_136 sbuild_0.66.0-5ubuntu1 dpkg-dev_1.18.3ubuntu1 python-debian_0.1.27ubuntu1. Syncing the system clock with the buildd NTP service... 5 Dec 05:04:09 ntpdate[34282]: adjust time server 10.211.37.1 offset 0.000080 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8372710', '/home/buildd/filecache-default/8808aeb45a9438550e8005f67e1dc6d720c06f47'] Unpacking chroot for build PACKAGEBUILD-8372710 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8372710'] Mounting chroot for build PACKAGEBUILD-8372710 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8372710', 'deb http://ftpmaster.internal/ubuntu xenial main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-8372710 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8372710', 's390x'] Updating debian chroot for build PACKAGEBUILD-8372710 Get:1 http://ftpmaster.internal xenial InRelease [227 kB] Ign http://archive-team.internal xenial InRelease Ign http://archive-team.internal xenial Release.gpg Hit http://archive-team.internal xenial Release Ign http://archive-team.internal xenial/main s390x Packages/DiffIndex Hit http://archive-team.internal xenial/main Translation-en Hit http://archive-team.internal xenial/main s390x Packages Get:2 http://ftpmaster.internal xenial/main s390x Packages [1292 kB] Get:3 http://ftpmaster.internal xenial/restricted s390x Packages [28 B] Get:4 http://ftpmaster.internal xenial/universe s390x Packages [5366 kB] Get:5 http://ftpmaster.internal xenial/multiverse s390x Packages [74.3 kB] Get:6 http://ftpmaster.internal xenial/main Translation-en [848 kB] Get:7 http://ftpmaster.internal xenial/multiverse Translation-en [109 kB] Get:8 http://ftpmaster.internal xenial/restricted Translation-en [4302 B] Get:9 http://ftpmaster.internal xenial/universe Translation-en [4729 kB] Fetched 12.6 MB in 10s (1236 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8372710', 's390x', 'xenial', '-c', 'chroot:autobuild', '--arch=s390x', '--dist=xenial', '--purge=never', '--nolog', 'clustalw-mpi_0.15-3build2.dsc'] Initiating build PACKAGEBUILD-8372710 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.3.0-0-generic #9 SMP Tue Dec 1 18:12:15 CET 2015 s390x sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on z13-004.buildd +==============================================================================+ | clustalw-mpi 0.15-3build2 (s390x) 05 Dec 2015 05:04 | +==============================================================================+ Package: clustalw-mpi Version: 0.15-3build2 Source Version: 0.15-3build2 Distribution: xenial Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/clustalw-mpi-ZtDsbt/clustalw-mpi-0.15' with '<>' I: NOTICE: Log filtering will replace 'build/clustalw-mpi-ZtDsbt' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8372710/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalw-mpi_0.15-3build2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-EhUbae/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/776 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), mpi-default-dev Filtered Build-Depends: debhelper (>= 9), mpi-default-dev dpkg-deb: building package 'sbuild-build-depends-clustalw-mpi-dummy' in '/<>/resolver-75kBK8/apt_archive/sbuild-build-depends-clustalw-mpi-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clustalw-mpi build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-5 groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libglib2.0-0 libicu55 libmagic1 libmpich-dev libmpich12 libmpl-dev libmpl1 libopa-dev libopa1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db mpi-default-dev po-debconf Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc libgfortran3-dbg groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs mpich xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base gfortran gfortran-5 groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libgfortran-5-dev libgfortran3 libglib2.0-0 libicu55 libmagic1 libmpich-dev libmpich12 libmpl-dev libmpl1 libopa-dev libopa1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db mpi-default-dev po-debconf sbuild-build-depends-clustalw-mpi-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 39.7 MB/39.7 MB of archives. After this operation, 186 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libasprintf0v5 groff-base file libfile-stripnondeterminism-perl dh-strip-nondeterminism libgfortran3 libgfortran-5-dev gfortran-5 sbuild-build-depends-clustalw-mpi-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main libasprintf0v5 s390x 0.19.4-1ubuntu3 [6638 B] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main groff-base s390x 1.22.3-4 [1199 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main bsdmainutils s390x 9.0.6ubuntu1 [178 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main libpipeline1 s390x 1.4.1-1 [24.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main man-db s390x 2.7.5-1 [850 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main libmagic1 s390x 1:5.25-2ubuntu1 [214 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main file s390x 1:5.25-2ubuntu1 [21.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial/main gettext-base s390x 0.19.4-1ubuntu3 [48.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main libglib2.0-0 s390x 2.47.3-3 [1041 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main libicu55 s390x 55.1-6ubuntu1 [7478 kB] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libxml2 s390x 2.9.2+zdfsg1-4ubuntu1 [640 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libcroco3 s390x 0.6.9-1 [77.2 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libunistring0 s390x 0.9.3-5.2ubuntu1 [262 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main gettext s390x 0.19.4-1ubuntu3 [838 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main po-debconf all 1.0.18 [234 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main libarchive-zip-perl all 1.53-1 [87.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main libtimedate-perl all 2.3000-2 [37.5 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main dh-strip-nondeterminism all 0.014-1 [5596 B] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main debhelper all 9.20151126ubuntu1 [741 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libgfortran3 s390x 5.2.1-27ubuntu1 [228 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main libgfortran-5-dev s390x 5.2.1-27ubuntu1 [256 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial/main gfortran-5 s390x 5.2.1-27ubuntu1 [23.5 MB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main gfortran s390x 4:5.2.1-16ubuntu2 [1288 B] Get:26 http://ftpmaster.internal/ubuntu/ xenial/universe libmpl1 s390x 3.1-6 [19.0 kB] Get:27 http://ftpmaster.internal/ubuntu/ xenial/universe libmpich12 s390x 3.1-6 [722 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/universe libmpl-dev s390x 3.1-6 [17.3 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/universe libopa1 s390x 3.1-6 [13.8 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/universe libopa-dev s390x 3.1-6 [11.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/universe libmpich-dev s390x 3.1-6 [915 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/universe mpi-default-dev s390x 1.0.2+nmu2 [3938 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.7 MB in 17s (2234 kB/s) Selecting previously unselected package libasprintf0v5:s390x. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11407 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_s390x.deb ... Unpacking libasprintf0v5:s390x (0.19.4-1ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-4_s390x.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_s390x.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../libpipeline1_1.4.1-1_s390x.deb ... Unpacking libpipeline1:s390x (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_s390x.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_s390x.deb ... Unpacking libmagic1:s390x (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_s390x.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.4-1ubuntu3_s390x.deb ... Unpacking gettext-base (0.19.4-1ubuntu3) ... Selecting previously unselected package libglib2.0-0:s390x. Preparing to unpack .../libglib2.0-0_2.47.3-3_s390x.deb ... Unpacking libglib2.0-0:s390x (2.47.3-3) ... Selecting previously unselected package libicu55:s390x. Preparing to unpack .../libicu55_55.1-6ubuntu1_s390x.deb ... Unpacking libicu55:s390x (55.1-6ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu1_s390x.deb ... Unpacking libxml2:s390x (2.9.2+zdfsg1-4ubuntu1) ... Selecting previously unselected package libcroco3:s390x. Preparing to unpack .../libcroco3_0.6.9-1_s390x.deb ... Unpacking libcroco3:s390x (0.6.9-1) ... Selecting previously unselected package libunistring0:s390x. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_s390x.deb ... Unpacking libunistring0:s390x (0.9.3-5.2ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.4-1ubuntu3_s390x.deb ... Unpacking gettext (0.19.4-1ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.53-1_all.deb ... Unpacking libarchive-zip-perl (1.53-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ... Unpacking dh-strip-nondeterminism (0.014-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20151126ubuntu1_all.deb ... Unpacking debhelper (9.20151126ubuntu1) ... Selecting previously unselected package libgfortran3:s390x. Preparing to unpack .../libgfortran3_5.2.1-27ubuntu1_s390x.deb ... Unpacking libgfortran3:s390x (5.2.1-27ubuntu1) ... Selecting previously unselected package libgfortran-5-dev:s390x. Preparing to unpack .../libgfortran-5-dev_5.2.1-27ubuntu1_s390x.deb ... Unpacking libgfortran-5-dev:s390x (5.2.1-27ubuntu1) ... Selecting previously unselected package gfortran-5. Preparing to unpack .../gfortran-5_5.2.1-27ubuntu1_s390x.deb ... Unpacking gfortran-5 (5.2.1-27ubuntu1) ... Selecting previously unselected package gfortran. Preparing to unpack .../gfortran_4%3a5.2.1-16ubuntu2_s390x.deb ... Unpacking gfortran (4:5.2.1-16ubuntu2) ... Selecting previously unselected package libmpl1:s390x. Preparing to unpack .../libmpl1_3.1-6_s390x.deb ... Unpacking libmpl1:s390x (3.1-6) ... Selecting previously unselected package libmpich12:s390x. Preparing to unpack .../libmpich12_3.1-6_s390x.deb ... Unpacking libmpich12:s390x (3.1-6) ... Selecting previously unselected package libmpl-dev. Preparing to unpack .../libmpl-dev_3.1-6_s390x.deb ... Unpacking libmpl-dev (3.1-6) ... Selecting previously unselected package libopa1:s390x. Preparing to unpack .../libopa1_3.1-6_s390x.deb ... Unpacking libopa1:s390x (3.1-6) ... Selecting previously unselected package libopa-dev. Preparing to unpack .../libopa-dev_3.1-6_s390x.deb ... Unpacking libopa-dev (3.1-6) ... Selecting previously unselected package libmpich-dev. Preparing to unpack .../libmpich-dev_3.1-6_s390x.deb ... Unpacking libmpich-dev (3.1-6) ... Selecting previously unselected package mpi-default-dev. Preparing to unpack .../mpi-default-dev_1.0.2+nmu2_s390x.deb ... Unpacking mpi-default-dev (1.0.2+nmu2) ... Selecting previously unselected package sbuild-build-depends-clustalw-mpi-dummy. Preparing to unpack .../sbuild-build-depends-clustalw-mpi-dummy.deb ... Unpacking sbuild-build-depends-clustalw-mpi-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... Setting up libasprintf0v5:s390x (0.19.4-1ubuntu3) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:s390x (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmagic1:s390x (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up libglib2.0-0:s390x (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:s390x (55.1-6ubuntu1) ... Setting up libxml2:s390x (2.9.2+zdfsg1-4ubuntu1) ... Setting up libcroco3:s390x (0.6.9-1) ... Setting up libunistring0:s390x (0.9.3-5.2ubuntu1) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libgfortran3:s390x (5.2.1-27ubuntu1) ... Setting up libgfortran-5-dev:s390x (5.2.1-27ubuntu1) ... Setting up gfortran-5 (5.2.1-27ubuntu1) ... Setting up gfortran (4:5.2.1-16ubuntu2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libmpl1:s390x (3.1-6) ... Setting up libmpich12:s390x (3.1-6) ... Setting up libmpl-dev (3.1-6) ... Setting up libopa1:s390x (3.1-6) ... Setting up libopa-dev (3.1-6) ... Setting up libmpich-dev (3.1-6) ... DEBUG: postinst in libmpich-dev update-alternatives: using /usr/include/mpich to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.2+nmu2) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up sbuild-build-depends-clustalw-mpi-dummy (0.invalid.0) ... Setting up dh-strip-nondeterminism (0.014-1) ... Processing triggers for libc-bin (2.21-0ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.3.0-0-generic s390x (s390x) Toolchain package versions: binutils_2.25.90.20151125-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-27ubuntu1 gcc-5_5.2.1-27ubuntu1 libc6-dev_2.21-0ubuntu5 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 linux-libc-dev_4.3.0-1.10 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151125-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-16ubuntu2 cpp-5_5.2.1-27ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-16ubuntu2 g++-5_5.2.1-27ubuntu1 gcc_4:5.2.1-16ubuntu2 gcc-5_5.2.1-27ubuntu1 gcc-5-base_5.2.1-27ubuntu1 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gfortran_4:5.2.1-16ubuntu2 gfortran-5_5.2.1-27ubuntu1 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.21-2 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu8 libapt-pkg4.16_1.0.10.2ubuntu1 libarchive-zip-perl_1.53-1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-27ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu5 libc-dev-bin_2.21-0ubuntu5 libc6_2.21-0ubuntu5 libc6-dev_2.21-0ubuntu5 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-27ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.3ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.2.1-27ubuntu1 libgcc1_1:5.2.1-27ubuntu1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libgfortran-5-dev_5.2.1-27ubuntu1 libgfortran3_5.2.1-27ubuntu1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.2.1-27ubuntu1 libgpg-error0_1.20-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 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libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2d-0ubuntu2 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 libsystemd0_228-2ubuntu1 libtasn1-6_4.7-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libudev1_228-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu1 linux-libc-dev_4.3.0-1.10 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-1ubuntu3 mpi-default-dev_1.0.2+nmu2 multiarch-support_2.21-0ubuntu5 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu2 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_123 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-clustalw-mpi-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu1 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri May 2 14:32:37 2014 UTC using RSA key ID F1ED1345 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw-mpi_0.15-3build2.dsc dpkg-source: info: extracting clustalw-mpi in clustalw-mpi-0.15 dpkg-source: info: unpacking clustalw-mpi_0.15.orig.tar.gz dpkg-source: info: unpacking clustalw-mpi_0.15-3build2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: source package clustalw-mpi dpkg-buildpackage: source version 0.15-3build2 dpkg-buildpackage: source distribution utopic dpkg-source --before-build clustalw-mpi-0.15 dpkg-buildpackage: host architecture s390x fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' /bin/rm -f *.o make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf clustalw-mpi make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a dh_auto_build -a make -j1 make[1]: Entering directory '/<>' mpicc -c -g clustalw-mpi.c mpicc -c -g interface.c interface.c: In function 'check_param': interface.c:207:20: warning: 'return' with no value, in function returning non-void if(args[0]==NULL) return; ^ interface.c: In function 'myexit': interface.c:3976:4: warning: 'return' with no value, in function returning non-void return; ^ interface.c: In function 'open_output_file': interface.c:2178:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, FILENAMELEN, stdin); ^ interface.c:2189:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, FILENAMELEN, stdin); ^ interface.c: In function 'create_parameter_output': interface.c:3871:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, FILENAMELEN, stdin); ^ interface.c: In function 'new_sequence_align': interface.c:2431:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, MAXLINE, stdin); ^ interface.c: In function 'get_tree': interface.c:2667:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, MAXLINE, stdin); ^ interface.c: In function 'profile_align': interface.c:2811:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, MAXLINE, stdin); ^ interface.c:2840:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(temp, MAXLINE, stdin); ^ mpicc -c -g sequence.c sequence.c: In function 'get_clustal_seq': sequence.c:158:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE+1,fin); /* read the title line...ignore it */ ^ sequence.c:163:25: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] for(i=1;i>' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform s390x: clustalw-mpi dh_strip debug symbol extraction: packages to act on: clustalw-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform s390x: clustalw-mpi dh_gencontrol debug symbol wrapper: packages to act on: clustalw-mpi dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package clustalw-mpi (pkgdir debian/clustalw-mpi, ddeb package dir debian/clustalw-mpi-dbgsym) dh_gencontrol debug symbol wrapper: building clustalw-mpi-dbgsym_0.15-3build2_s390x.ddeb dpkg-deb: building package 'clustalw-mpi-dbgsym' in '../clustalw-mpi-dbgsym_0.15-3build2_s390x.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile clustalw-mpi-dbgsym_0.15-3build2_s390x.ddeb non-free/science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 123 pkgstriptranslations: processing clustalw-mpi (in debian/clustalw-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw-mpi/DEBIAN/control, package clustalw-mpi, directory debian/clustalw-mpi pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalw-mpi ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalw-mpi' in '../clustalw-mpi_0.15-3build2_s390x.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../clustalw-mpi_0.15-3build2_s390x.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clustalw-mpi-0.15 dpkg-buildpackage: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20151205-0505 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalw-mpi_0.15-3build2_s390x.changes: ---------------------------------------- Format: 1.8 Date: Fri, 02 May 2014 10:32:11 -0400 Source: clustalw-mpi Binary: clustalw-mpi Architecture: s390x Version: 0.15-3build2 Distribution: xenial Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Logan Rosen Description: clustalw-mpi - MPI-distributed global sequence alignment with ClustalW Changes: clustalw-mpi (0.15-3build2) utopic; urgency=medium . * No-change rebuild to drop mpich dependency on arm64. Checksums-Sha1: 531ea5641a2a6a8e8437f8b536a418372868ff20 146346 clustalw-mpi-dbgsym_0.15-3build2_s390x.ddeb 4db967f57ca62a64c30b2af9b26b962252490781 138630 clustalw-mpi_0.15-3build2_s390x.deb Checksums-Sha256: ff88cd68e0e275549214e96345c986c0d54c7fd572140e8fbef53d5b9b76b432 146346 clustalw-mpi-dbgsym_0.15-3build2_s390x.ddeb c5d657f13030203a057fadd62a0b46dcecd05f4b53f1a5d3e3b89bab23eebdc6 138630 clustalw-mpi_0.15-3build2_s390x.deb Files: b11b452950b05ab497b8fa063b159094 146346 non-free/science extra clustalw-mpi-dbgsym_0.15-3build2_s390x.ddeb 53121ae335006b4ade3f700433e2eee5 138630 non-free/science optional clustalw-mpi_0.15-3build2_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalw-mpi_0.15-3build2_s390x.deb ----------------------------------- new debian package, version 2.0. size 138630 bytes: control archive=1350 bytes. 1779 bytes, 37 lines control 599 bytes, 8 lines md5sums Package: clustalw-mpi Version: 0.15-3build2 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 357 Depends: libc6 (>= 2.7), libmpich12 Suggests: seaview, clustalx Enhances: clustalw Section: non-free/science Priority: optional Homepage: http://www.bii.a-star.edu.sg/achievements/applications/clustalw/ Description: MPI-distributed global sequence alignment with ClustalW ClustalW is a popular tool for multiple sequence alignment. The alignment is achieved via three steps: pairwise alignment, guide-tree generation and progressive alignment. ClustalW-MPI is an MPI implementation of ClustalW. Based on version 1.82 of the original ClustalW, both the pairwise and progressive alignments are parallelized with MPI, a popular message passing programming standard. The pairwise alignments can be easily parallelized since the many alignments are time independent on each other. However the progressive alignments are essentially not parallelizable because of the time dependencies between each alignment. . Here the recursive parallelism paradigm is applied to the linear space profile-profile alignment algorithm. This approach is more time efficient on computers with distributed memory architecture. Traditional approach that relies on precomputing the profile-profile score matrix has also been implemented. Results shown the latter is indeed more appropriate for shared memory multiprocessor computer. . ClustalX is suggested for its support for local realignments, seaview is a versatile editor of alignments. . The original ClustalW/ClustalX can be found at URL: http://www.clustal.org/download/pre-2/ drwxr-xr-x root/root 0 2015-12-05 05:05 ./ drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/ drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/bin/ -rwxr-xr-x root/root 326768 2015-12-05 05:05 ./usr/bin/clustalw-mpi drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/share/ drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/share/doc/clustalw-mpi/ -rw-r--r-- root/root 1994 2008-05-23 07:36 ./usr/share/doc/clustalw-mpi/History -rw-r--r-- root/root 2602 2008-05-23 07:37 ./usr/share/doc/clustalw-mpi/README.clustalw-mpi.gz -rw-r--r-- root/root 1998 2014-05-02 14:32 ./usr/share/doc/clustalw-mpi/changelog.Debian.gz -rw-r--r-- root/root 1903 2013-09-08 00:21 ./usr/share/doc/clustalw-mpi/copyright drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/share/doc/clustalw-mpi/examples/ -rw-r--r-- root/root 12960 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/db10.input.gz -rw-r--r-- root/root 3834 2003-04-07 01:33 ./usr/share/doc/clustalw-mpi/examples/dele.input.gz drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/share/man/ drwxr-xr-x root/root 0 2015-12-05 05:05 ./usr/share/man/man1/ -rw-r--r-- root/root 596 2015-12-05 05:05 ./usr/share/man/man1/clustalw-mpi.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 4200 Build-Time: 12 Distribution: xenial Host Architecture: s390x Install-Time: 27 Job: clustalw-mpi_0.15-3build2.dsc Machine Architecture: s390x Package: clustalw-mpi Package-Time: 40 Source-Version: 0.15-3build2 Space: 4200 Status: successful Version: 0.15-3build2 -------------------------------------------------------------------------------- Finished at 20151205-0505 Build needed 00:00:40, 4200k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8372710'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8372710/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8372710'] Unmounting chroot for build PACKAGEBUILD-8372710... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8372710'] Removing build PACKAGEBUILD-8372710