RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux sagari 3.2.0-49-powerpc64-smp #75-Ubuntu SMP Tue Jun 18 17:51:20 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 14 Nov 17:28:56 ntpdate[10977]: adjust time server 10.211.37.1 offset -0.000008 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5231237', '/home/buildd/filecache-default/b94b394cc2bdc71c8f0daf6b0130bdf15bffc4f2'] Unpacking chroot for build PACKAGEBUILD-5231237 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5231237'] Mounting chroot for build PACKAGEBUILD-5231237 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5231237', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5231237 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5231237', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-5231237 Ign http://ftpmaster.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Get:2 http://ftpmaster.internal trusty-security Release.gpg [933 B] Ign http://archive-team.internal trusty InRelease Get:3 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Ign http://archive-team.internal trusty Release.gpg Get:4 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty Release [49.6 kB] Get:6 http://archive-team.internal trusty Release [744 B] Get:7 http://ftpmaster.internal trusty-security Release [49.6 kB] Get:8 http://ftpmaster.internal trusty-updates Release [49.6 kB] Get:9 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Get:10 http://ftpmaster.internal trusty/main powerpc Packages [1219 kB] Get:11 http://archive-team.internal trusty/main powerpc Packages Ign http://archive-team.internal trusty/main Translation-en Get:12 http://ftpmaster.internal trusty/restricted powerpc Packages [14 B] Get:13 http://ftpmaster.internal trusty/universe powerpc Packages [5616 kB] Get:14 http://ftpmaster.internal trusty/multiverse powerpc Packages [116 kB] Get:15 http://ftpmaster.internal trusty/main Translation-en [723 kB] Get:16 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:17 http://ftpmaster.internal trusty/restricted Translation-en [2660 B] Get:18 http://ftpmaster.internal trusty/universe Translation-en [3968 kB] Get:19 http://ftpmaster.internal trusty-security/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal trusty-security/restricted powerpc Packages [14 B] Get:21 http://ftpmaster.internal trusty-security/universe powerpc Packages [14 B] Get:22 http://ftpmaster.internal trusty-security/multiverse powerpc Packages [14 B] Get:23 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal trusty-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal trusty-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal trusty-updates/main powerpc Packages [14 B] Get:28 http://ftpmaster.internal trusty-updates/restricted powerpc Packages [14 B] Get:29 http://ftpmaster.internal trusty-updates/universe powerpc Packages [14 B] Get:30 http://ftpmaster.internal trusty-updates/multiverse powerpc Packages [14 B] Get:31 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal trusty-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal trusty-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal trusty-proposed/main powerpc Packages [24.9 kB] Get:36 http://ftpmaster.internal trusty-proposed/restricted powerpc Packages [14 B] Get:37 http://ftpmaster.internal trusty-proposed/universe powerpc Packages [142 kB] Get:38 http://ftpmaster.internal trusty-proposed/multiverse powerpc Packages [2658 B] Get:39 http://ftpmaster.internal trusty-proposed/main Translation-en [19.2 kB] Get:40 http://ftpmaster.internal trusty-proposed/multiverse Translation-en [2418 B] Get:41 http://ftpmaster.internal trusty-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal trusty-proposed/universe Translation-en [93.9 kB] Fetched 12.2 MB in 4s (2711 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libffi6 The following packages will be upgraded: adduser apt apt-transport-https busybox-initramfs coreutils cpp-4.8 debconf g++-4.8 gcc-4.8 gcc-4.8-base gnupg gpgv initramfs-tools initramfs-tools-bin kmod libapt-pkg4.12 libasan0 libasn1-8-heimdal libatomic1 libcurl3-gnutls libdb5.3 libdbus-1-3 libdrm2 libgcc-4.8-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libk5crypto3 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libnih-dbus1 libnih1 libp11-kit0 libpng12-0 libroken18-heimdal libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsqlite3-0 libstdc++-4.8-dev libstdc++6 libudev1 libwind0-heimdal linux-libc-dev module-init-tools patch perl perl-base perl-modules tar udev upstart 65 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 47.0 MB of archives. After this operation, 3050 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! coreutils perl perl-base perl-modules libdb5.3 tar gcc-4.8-base libgcc1 libgomp1 libatomic1 libasan0 cpp-4.8 g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++-4.8-dev libstdc++6 libgmp10 libapt-pkg4.12 gpgv gnupg apt debconf libselinux1 libsemanage-common libsemanage1 libsepol1 libffi6 libp11-kit0 libsqlite3-0 libdbus-1-3 libdrm2 libkmod2 libnih-dbus1 libnih1 libpng12-0 udev libudev1 kmod module-init-tools libroken18-heimdal libasn1-8-heimdal libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-modules-db libsasl2-2 libldap-2.4-2 libcurl3-gnutls adduser busybox-initramfs initramfs-tools initramfs-tools-bin upstart apt-transport-https libsasl2-modules linux-libc-dev patch Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main coreutils powerpc 8.21-1ubuntu3 [2422 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main perl powerpc 5.18.1-4build1 [4070 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main perl-base powerpc 5.18.1-4build1 [1580 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.1-4build1 [3921 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libdb5.3 powerpc 5.3.28-3 [798 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main tar powerpc 1.27-3 [235 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gcc-4.8-base powerpc 4.8.2-4ubuntu1 [15.9 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcc1 powerpc 1:4.8.2-4ubuntu1 [43.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgomp1 powerpc 4.8.2-4ubuntu1 [29.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libatomic1 powerpc 4.8.2-4ubuntu1 [8390 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libasan0 powerpc 4.8.2-4ubuntu1 [82.6 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty-proposed/main cpp-4.8 powerpc 4.8.2-4ubuntu1 [6140 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty-proposed/main g++-4.8 powerpc 4.8.2-4ubuntu1 [8155 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gcc-4.8 powerpc 4.8.2-4ubuntu1 [6923 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcc-4.8-dev powerpc 4.8.2-4ubuntu1 [420 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libstdc++-4.8-dev powerpc 4.8.2-4ubuntu1 [1823 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libstdc++6 powerpc 4.8.2-4ubuntu1 [396 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgmp10 powerpc 2:5.1.2+dfsg-3ubuntu1 [245 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 powerpc 0.9.9.1~ubuntu4 [841 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main gpgv powerpc 1.4.15-1.1ubuntu1 [180 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main gnupg powerpc 1.4.15-1.1ubuntu1 [785 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main apt powerpc 0.9.9.1~ubuntu4 [1246 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main debconf all 1.5.51ubuntu1 [148 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libselinux1 powerpc 2.2.1-1ubuntu1 [67.6 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libsemanage-common all 2.2-1 [6488 B] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libsemanage1 powerpc 2.2-1 [79.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libsepol1 powerpc 2.2-1 [120 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 powerpc 3.0.13-4 [20.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main libp11-kit0 powerpc 0.20.1-2ubuntu1 [87.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 powerpc 3.8.1-1ubuntu1 [394 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libdbus-1-3 powerpc 1.6.18-0ubuntu1 [146 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 powerpc 2.4.46-4 [25.9 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libkmod2 powerpc 15-0ubuntu2 [47.2 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libnih-dbus1 powerpc 1.0.3-4ubuntu24 [16.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libnih1 powerpc 1.0.3-4ubuntu24 [52.5 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-0 powerpc 1.2.49-5ubuntu1 [128 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main udev powerpc 204-5ubuntu6 [1089 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libudev1 powerpc 204-5ubuntu6 [49.2 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main kmod powerpc 15-0ubuntu2 [99.1 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main module-init-tools all 15-0ubuntu2 [1874 B] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libroken18-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [46.8 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libasn1-8-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [183 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 powerpc 1.11.3+dfsg-3ubuntu2 [108 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 powerpc 1.11.3+dfsg-3ubuntu2 [131 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 powerpc 1.11.3+dfsg-3ubuntu2 [356 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 powerpc 1.11.3+dfsg-3ubuntu2 [32.6 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libhcrypto4-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [104 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libheimbase1-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [31.4 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main libwind0-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [84.2 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libhx509-5-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [120 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-26-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [226 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main libheimntlm0-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [15.9 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi3-heimdal powerpc 1.6~git20120403+dfsg1-3ubuntu0.2 [107 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-modules-db powerpc 2.1.25.dfsg1-17build1 [15.0 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-2 powerpc 2.1.25.dfsg1-17build1 [55.6 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main libldap-2.4-2 powerpc 2.4.31-1+nmu2ubuntu5 [178 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main libcurl3-gnutls powerpc 7.33.0-1ubuntu1 [196 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main adduser all 3.113+nmu3ubuntu3 [169 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs powerpc 1:1.20.0-9ubuntu2 [203 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools all 0.103ubuntu2 [49.2 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools-bin powerpc 0.103ubuntu2 [9832 B] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main upstart powerpc 1.10-0ubuntu9 [541 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https powerpc 0.9.9.1~ubuntu4 [16.6 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-modules powerpc 2.1.25.dfsg1-17build1 [62.3 kB] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev powerpc 3.12.0-2.7 [945 kB] Get:66 http://ftpmaster.internal/ubuntu/ trusty/main patch powerpc 2.7.1-4 [103 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.0 MB in 2s (21.6 MB/s) (Reading database ... 11994 files and directories currently installed.) Preparing to replace coreutils 8.20-3ubuntu5 (using .../coreutils_8.21-1ubuntu3_powerpc.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.21-1ubuntu3) ... (Reading database ... 11996 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4build1_powerpc.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4build1_powerpc.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4build1) ... (Reading database ... 11898 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4build1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libdb5.3:powerpc 5.3.21-2 (using .../libdb5.3_5.3.28-3_powerpc.deb) ... Unpacking replacement libdb5.3:powerpc ... Setting up libdb5.3:powerpc (5.3.28-3) ... Processing triggers for libc-bin ... (Reading database ... 11934 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-8 (using .../tar_1.27-3_powerpc.deb) ... Unpacking replacement tar ... Setting up tar (1.27-3) ... (Reading database ... 11935 files and directories currently installed.) Preparing to replace gcc-4.8-base:powerpc 4.8.2-1ubuntu2 (using .../gcc-4.8-base_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8-base:powerpc ... Setting up gcc-4.8-base:powerpc (4.8.2-4ubuntu1) ... (Reading database ... 11935 files and directories currently installed.) Preparing to replace libgcc1:powerpc 1:4.8.2-1ubuntu2 (using .../libgcc1_1%3a4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement libgcc1:powerpc ... Setting up libgcc1:powerpc (1:4.8.2-4ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11935 files and directories currently installed.) Preparing to replace libgomp1:powerpc 4.8.2-1ubuntu2 (using .../libgomp1_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement libgomp1:powerpc ... Preparing to replace libatomic1:powerpc 4.8.2-1ubuntu2 (using .../libatomic1_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement libatomic1:powerpc ... Preparing to replace libasan0:powerpc 4.8.2-1ubuntu2 (using .../libasan0_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement libasan0:powerpc ... Preparing to replace cpp-4.8 4.8.2-1ubuntu2 (using .../cpp-4.8_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace g++-4.8 4.8.2-1ubuntu2 (using .../g++-4.8_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.2-1ubuntu2 (using .../gcc-4.8_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:powerpc 4.8.2-1ubuntu2 (using .../libgcc-4.8-dev_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement libgcc-4.8-dev:powerpc ... Preparing to replace libstdc++-4.8-dev:powerpc 4.8.2-1ubuntu2 (using .../libstdc++-4.8-dev_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++-4.8-dev:powerpc ... Preparing to replace libstdc++6:powerpc 4.8.2-1ubuntu2 (using .../libstdc++6_4.8.2-4ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6:powerpc ... Setting up libstdc++6:powerpc (4.8.2-4ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11933 files and directories currently installed.) Preparing to replace libgmp10:powerpc 2:5.1.2+dfsg-2ubuntu1 (using .../libgmp10_2%3a5.1.2+dfsg-3ubuntu1_powerpc.deb) ... Unpacking replacement libgmp10:powerpc ... Preparing to replace libapt-pkg4.12:powerpc 0.9.9.1~ubuntu3 (using .../libapt-pkg4.12_0.9.9.1~ubuntu4_powerpc.deb) ... Unpacking replacement libapt-pkg4.12:powerpc ... Setting up libapt-pkg4.12:powerpc (0.9.9.1~ubuntu4) ... Processing triggers for libc-bin ... (Reading database ... 11933 files and directories currently installed.) Preparing to replace gpgv 1.4.14-1ubuntu2 (using .../gpgv_1.4.15-1.1ubuntu1_powerpc.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.15-1.1ubuntu1) ... (Reading database ... 11933 files and directories currently installed.) Preparing to replace gnupg 1.4.14-1ubuntu2 (using .../gnupg_1.4.15-1.1ubuntu1_powerpc.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.15-1.1ubuntu1) ... (Reading database ... 11933 files and directories currently installed.) Preparing to replace apt 0.9.9.1~ubuntu3 (using .../apt_0.9.9.1~ubuntu4_powerpc.deb) ... Unpacking replacement apt ... Setting up apt (0.9.9.1~ubuntu4) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... 11933 files and directories currently installed.) Preparing to replace debconf 1.5.50ubuntu1 (using .../debconf_1.5.51ubuntu1_all.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.51ubuntu1) ... (Reading database ... 11933 files and directories currently installed.) Preparing to replace libselinux1:powerpc 2.1.13-3 (using .../libselinux1_2.2.1-1ubuntu1_powerpc.deb) ... Unpacking replacement libselinux1:powerpc ... Setting up libselinux1:powerpc (2.2.1-1ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11933 files and directories currently installed.) Preparing to replace libsemanage-common 2.1.10-3 (using .../libsemanage-common_2.2-1_all.deb) ... Unpacking replacement libsemanage-common ... Setting up libsemanage-common (2.2-1) ... (Reading database ... 11933 files and directories currently installed.) Preparing to replace libsemanage1:powerpc 2.1.10-3 (using .../libsemanage1_2.2-1_powerpc.deb) ... Unpacking replacement libsemanage1:powerpc ... Preparing to replace libsepol1:powerpc 2.1.9-2 (using .../libsepol1_2.2-1_powerpc.deb) ... Unpacking replacement libsepol1:powerpc ... Setting up libsepol1:powerpc (2.2-1) ... Setting up libsemanage1:powerpc (2.2-1) ... Processing triggers for libc-bin ... Selecting previously unselected package libffi6:powerpc. (Reading database ... 11933 files and directories currently installed.) Unpacking libffi6:powerpc (from .../libffi6_3.0.13-4_powerpc.deb) ... Preparing to replace libp11-kit0:powerpc 0.18.3-2ubuntu1 (using .../libp11-kit0_0.20.1-2ubuntu1_powerpc.deb) ... Unpacking replacement libp11-kit0:powerpc ... Preparing to replace libsqlite3-0:powerpc 3.7.17-1ubuntu1 (using .../libsqlite3-0_3.8.1-1ubuntu1_powerpc.deb) ... Unpacking replacement libsqlite3-0:powerpc ... Preparing to replace libdbus-1-3:powerpc 1.6.12-0ubuntu10 (using .../libdbus-1-3_1.6.18-0ubuntu1_powerpc.deb) ... Unpacking replacement libdbus-1-3:powerpc ... Preparing to replace libdrm2:powerpc 2.4.46-3 (using .../libdrm2_2.4.46-4_powerpc.deb) ... Unpacking replacement libdrm2:powerpc ... Preparing to replace libkmod2:powerpc 9-3ubuntu1 (using .../libkmod2_15-0ubuntu2_powerpc.deb) ... Unpacking replacement libkmod2:powerpc ... Preparing to replace libnih-dbus1:powerpc 1.0.3-4ubuntu16 (using .../libnih-dbus1_1.0.3-4ubuntu24_powerpc.deb) ... Unpacking replacement libnih-dbus1:powerpc ... Preparing to replace libnih1:powerpc 1.0.3-4ubuntu16 (using .../libnih1_1.0.3-4ubuntu24_powerpc.deb) ... Unpacking replacement libnih1:powerpc ... Preparing to replace libpng12-0:powerpc 1.2.49-4ubuntu1 (using .../libpng12-0_1.2.49-5ubuntu1_powerpc.deb) ... Unpacking replacement libpng12-0:powerpc ... Preparing to replace udev 204-0ubuntu19 (using .../udev_204-5ubuntu6_powerpc.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:powerpc 204-0ubuntu19 (using .../libudev1_204-5ubuntu6_powerpc.deb) ... Unpacking replacement libudev1:powerpc ... Preparing to replace kmod 9-3ubuntu1 (using .../kmod_15-0ubuntu2_powerpc.deb) ... Unpacking replacement kmod ... Preparing to replace module-init-tools 9-3ubuntu1 (using .../module-init-tools_15-0ubuntu2_all.deb) ... Unpacking replacement module-init-tools ... Preparing to replace libroken18-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libroken18-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libroken18-heimdal:powerpc ... Preparing to replace libasn1-8-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libasn1-8-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libasn1-8-heimdal:powerpc ... Preparing to replace libk5crypto3:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libk5crypto3_1.11.3+dfsg-3ubuntu2_powerpc.deb) ... Unpacking replacement libk5crypto3:powerpc ... Preparing to replace libgssapi-krb5-2:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libgssapi-krb5-2_1.11.3+dfsg-3ubuntu2_powerpc.deb) ... Unpacking replacement libgssapi-krb5-2:powerpc ... Preparing to replace libkrb5-3:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5-3_1.11.3+dfsg-3ubuntu2_powerpc.deb) ... Unpacking replacement libkrb5-3:powerpc ... Preparing to replace libkrb5support0:powerpc 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5support0_1.11.3+dfsg-3ubuntu2_powerpc.deb) ... Unpacking replacement libkrb5support0:powerpc ... Preparing to replace libhcrypto4-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libhcrypto4-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libhcrypto4-heimdal:powerpc ... Preparing to replace libheimbase1-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libheimbase1-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libheimbase1-heimdal:powerpc ... Preparing to replace libwind0-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libwind0-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libwind0-heimdal:powerpc ... Preparing to replace libhx509-5-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libhx509-5-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libhx509-5-heimdal:powerpc ... Preparing to replace libkrb5-26-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libkrb5-26-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libkrb5-26-heimdal:powerpc ... Preparing to replace libheimntlm0-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libheimntlm0-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libheimntlm0-heimdal:powerpc ... Preparing to replace libgssapi3-heimdal:powerpc 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libgssapi3-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_powerpc.deb) ... Unpacking replacement libgssapi3-heimdal:powerpc ... Preparing to replace libsasl2-modules-db:powerpc 2.1.25.dfsg1-17 (using .../libsasl2-modules-db_2.1.25.dfsg1-17build1_powerpc.deb) ... Unpacking replacement libsasl2-modules-db:powerpc ... Preparing to replace libsasl2-2:powerpc 2.1.25.dfsg1-17 (using .../libsasl2-2_2.1.25.dfsg1-17build1_powerpc.deb) ... Unpacking replacement libsasl2-2:powerpc ... Preparing to replace libldap-2.4-2:powerpc 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu5_powerpc.deb) ... Unpacking replacement libldap-2.4-2:powerpc ... Preparing to replace libcurl3-gnutls:powerpc 7.32.0-1ubuntu1 (using .../libcurl3-gnutls_7.33.0-1ubuntu1_powerpc.deb) ... Unpacking replacement libcurl3-gnutls:powerpc ... Preparing to replace adduser 3.113+nmu3ubuntu2 (using .../adduser_3.113+nmu3ubuntu3_all.deb) ... Unpacking replacement adduser ... Preparing to replace busybox-initramfs 1:1.20.0-9ubuntu1 (using .../busybox-initramfs_1%3a1.20.0-9ubuntu2_powerpc.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace initramfs-tools 0.103ubuntu1 (using .../initramfs-tools_0.103ubuntu2_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.103ubuntu1 (using .../initramfs-tools-bin_0.103ubuntu2_powerpc.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace upstart 1.10-0ubuntu7 (using .../upstart_1.10-0ubuntu9_powerpc.deb) ... Unpacking replacement upstart ... Preparing to replace apt-transport-https 0.9.9.1~ubuntu3 (using .../apt-transport-https_0.9.9.1~ubuntu4_powerpc.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace libsasl2-modules:powerpc 2.1.25.dfsg1-17 (using .../libsasl2-modules_2.1.25.dfsg1-17build1_powerpc.deb) ... Unpacking replacement libsasl2-modules:powerpc ... Preparing to replace linux-libc-dev:powerpc 3.11.0-12.19 (using .../linux-libc-dev_3.12.0-2.7_powerpc.deb) ... Unpacking replacement linux-libc-dev:powerpc ... Preparing to replace patch 2.7.1-3 (using .../patch_2.7.1-4_powerpc.deb) ... Unpacking replacement patch ... Setting up libgomp1:powerpc (4.8.2-4ubuntu1) ... Setting up libatomic1:powerpc (4.8.2-4ubuntu1) ... Setting up libasan0:powerpc (4.8.2-4ubuntu1) ... Setting up libgmp10:powerpc (2:5.1.2+dfsg-3ubuntu1) ... Setting up cpp-4.8 (4.8.2-4ubuntu1) ... Setting up libgcc-4.8-dev:powerpc (4.8.2-4ubuntu1) ... Setting up gcc-4.8 (4.8.2-4ubuntu1) ... Setting up libstdc++-4.8-dev:powerpc (4.8.2-4ubuntu1) ... Setting up g++-4.8 (4.8.2-4ubuntu1) ... Setting up libffi6:powerpc (3.0.13-4) ... Setting up libp11-kit0:powerpc (0.20.1-2ubuntu1) ... Setting up libsqlite3-0:powerpc (3.8.1-1ubuntu1) ... Setting up libdbus-1-3:powerpc (1.6.18-0ubuntu1) ... Setting up libdrm2:powerpc (2.4.46-4) ... Setting up libkmod2:powerpc (15-0ubuntu2) ... Setting up libnih1:powerpc (1.0.3-4ubuntu24) ... Setting up libnih-dbus1:powerpc (1.0.3-4ubuntu24) ... Setting up libpng12-0:powerpc (1.2.49-5ubuntu1) ... Setting up libudev1:powerpc (204-5ubuntu6) ... Setting up udev (204-5ubuntu6) ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/udev/udev.conf ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up kmod (15-0ubuntu2) ... Setting up module-init-tools (15-0ubuntu2) ... Setting up libroken18-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libasn1-8-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libkrb5support0:powerpc (1.11.3+dfsg-3ubuntu2) ... Setting up libk5crypto3:powerpc (1.11.3+dfsg-3ubuntu2) ... Setting up libkrb5-3:powerpc (1.11.3+dfsg-3ubuntu2) ... Setting up libgssapi-krb5-2:powerpc (1.11.3+dfsg-3ubuntu2) ... Setting up libhcrypto4-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libheimbase1-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libwind0-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libhx509-5-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libkrb5-26-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libheimntlm0-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libgssapi3-heimdal:powerpc (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libsasl2-modules-db:powerpc (2.1.25.dfsg1-17build1) ... Setting up libsasl2-2:powerpc (2.1.25.dfsg1-17build1) ... Setting up libldap-2.4-2:powerpc (2.4.31-1+nmu2ubuntu5) ... Setting up libcurl3-gnutls:powerpc (7.33.0-1ubuntu1) ... Setting up adduser (3.113+nmu3ubuntu3) ... Setting up busybox-initramfs (1:1.20.0-9ubuntu2) ... Setting up initramfs-tools-bin (0.103ubuntu2) ... Setting up initramfs-tools (0.103ubuntu2) ... update-initramfs: deferring update (trigger activated) Setting up upstart (1.10-0ubuntu9) ... Setting up apt-transport-https (0.9.9.1~ubuntu4) ... Setting up libsasl2-modules:powerpc (2.1.25.dfsg1-17build1) ... Setting up linux-libc-dev:powerpc (3.12.0-2.7) ... Setting up patch (2.7.1-4) ... Setting up perl-modules (5.18.1-4build1) ... Setting up perl (5.18.1-4build1) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5231237', 'powerpc', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=multiverse', 'clustalw_2.1+lgpl-3.dsc'] Initiating build PACKAGEBUILD-5231237 with 24 jobs across 24 processor cores. Kernel reported to sbuild: 3.2.0-49-powerpc64-smp #75-Ubuntu SMP Tue Jun 18 17:51:20 UTC 2013 ppc Automatic build of clustalw_2.1+lgpl-3 on sagari by sbuild/powerpc 1.170.5 Build started at 20131114-1729 ****************************************************************************** clustalw_2.1+lgpl-3.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), autotools-dev Checking for already installed source dependencies... debhelper: missing autotools-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autotools-dev bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.4 MB of archives. After this operation, 40.0 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base autotools-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 powerpc 2.1.0-4 [132 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 powerpc 5.11-2ubuntu4 [170 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal powerpc 3.3.2-7ubuntu4 [595 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib powerpc 3.3.2-7ubuntu4 [2728 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal powerpc 3.3.2-7ubuntu4 [1859 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 powerpc 0.18.3.1-1ubuntu1 [7346 B] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 powerpc 2.38.1-1 [882 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 powerpc 1.2.4-1 [26.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 powerpc 2.9.1+dfsg1-3ubuntu2 [645 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main groff-base powerpc 1.22.2-3 [705 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main man-db powerpc 2.6.5-2 [686 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 powerpc 0.6.8-2 [70.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 powerpc 0.9.3-5ubuntu1 [414 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 powerpc 3.3.2-7ubuntu4 [129 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3-minimal powerpc 3.3.2-17 [26.3 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpython3-stdlib powerpc 3.3.2-17 [7866 B] Get:19 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3 powerpc 3.3.2-17 [9180 B] Get:20 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu2 [60.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main file powerpc 5.11-2ubuntu4 [18.2 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base powerpc 0.18.3.1-1ubuntu1 [64.6 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gettext powerpc 0.18.3.1-1ubuntu1 [1014 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu34 [23.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu34 [7772 B] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.4 MB in 0s (18.6 MB/s) Selecting previously unselected package libexpat1:powerpc. (Reading database ... 11954 files and directories currently installed.) Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-4_powerpc.deb) ... Selecting previously unselected package libmagic1:powerpc. Unpacking libmagic1:powerpc (from .../libmagic1_5.11-2ubuntu4_powerpc.deb) ... Selecting previously unselected package libpython3.3-minimal:powerpc. Unpacking libpython3.3-minimal:powerpc (from .../libpython3.3-minimal_3.3.2-7ubuntu4_powerpc.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:powerpc. Unpacking libpython3.3-stdlib:powerpc (from .../libpython3.3-stdlib_3.3.2-7ubuntu4_powerpc.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-7ubuntu4_powerpc.deb) ... Selecting previously unselected package libasprintf0c2:powerpc. Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.3.1-1ubuntu1_powerpc.deb) ... Selecting previously unselected package libglib2.0-0:powerpc. Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.38.1-1_powerpc.deb) ... Selecting previously unselected package libpipeline1:powerpc. Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.4-1_powerpc.deb) ... Selecting previously unselected package libxml2:powerpc. Unpacking libxml2:powerpc (from .../libxml2_2.9.1+dfsg1-3ubuntu2_powerpc.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_powerpc.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_powerpc.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_powerpc.deb) ... Selecting previously unselected package libcroco3:powerpc. Unpacking libcroco3:powerpc (from .../libcroco3_0.6.8-2_powerpc.deb) ... Selecting previously unselected package libunistring0:powerpc. Unpacking libunistring0:powerpc (from .../libunistring0_0.9.3-5ubuntu1_powerpc.deb) ... Selecting previously unselected package python3.3. Unpacking python3.3 (from .../python3.3_3.3.2-7ubuntu4_powerpc.deb) ... Selecting previously unselected package python3-minimal. Unpacking python3-minimal (from .../python3-minimal_3.3.2-17_powerpc.deb) ... Selecting previously unselected package libpython3-stdlib:powerpc. Unpacking libpython3-stdlib:powerpc (from .../libpython3-stdlib_3.3.2-17_powerpc.deb) ... Selecting previously unselected package python3. Unpacking python3 (from .../python3_3.3.2-17_powerpc.deb) ... Selecting previously unselected package dh-python. Unpacking dh-python (from .../dh-python_1.20131021-1ubuntu2_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.11-2ubuntu4_powerpc.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.3.1-1ubuntu1_powerpc.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20130810.1_all.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.3.1-1ubuntu1_powerpc.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package apparmor-easyprof. Unpacking apparmor-easyprof (from .../apparmor-easyprof_2.8.0-0ubuntu34_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.8.0-0ubuntu34_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20130921ubuntu1_all.deb) ... Setting up libexpat1:powerpc (2.1.0-4) ... Setting up libmagic1:powerpc (5.11-2ubuntu4) ... Setting up libpython3.3-minimal:powerpc (3.3.2-7ubuntu4) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:powerpc (3.3.2-7ubuntu4) ... Setting up python3.3-minimal (3.3.2-7ubuntu4) ... Setting up libasprintf0c2:powerpc (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:powerpc (2.38.1-1) ... No schema files found: doing nothing. Setting up libpipeline1:powerpc (1.2.4-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:powerpc (0.6.8-2) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu1) ... Setting up python3.3 (3.3.2-7ubuntu4) ... Setting up python3-minimal (3.3.2-17) ... Setting up libpython3-stdlib:powerpc (3.3.2-17) ... Setting up file (5.11-2ubuntu4) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up autotools-dev (20130810.1) ... Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20131021-1ubuntu2) ... Setting up python3 (3.3.2-17) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu34) ... Setting up dh-apparmor (2.8.0-0ubuntu34) ... Setting up debhelper (9.20130921ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.2-4ubuntu1 g++-4.8_4.8.2-4ubuntu1 binutils_2.23.90.20131017-1ubuntu1 libstdc++-4.8-dev_4.8.2-4ubuntu1 libstdc++6_4.8.2-4ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Thu Nov 14 08:28:00 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw_2.1+lgpl-3.dsc dpkg-source: info: extracting clustalw in clustalw-2.1+lgpl dpkg-source: info: unpacking clustalw_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalw_2.1+lgpl-3.debian.tar.gz dpkg-buildpackage: source package clustalw dpkg-buildpackage: source version 2.1+lgpl-3 dpkg-source --before-build clustalw-2.1+lgpl dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu checking target system type... powerpc-unknown-linux-gnu building for linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make sets $(MAKE)... (cached) yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... no checking for an ANSI C-conforming const... yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes configure: creating ./config.status config.status: creating Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/clustalw_version.h config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making all in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making all in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make all-recursive make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo './'`./pairwise/FullPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FullPairwiseAlign.h:9, from ./pairwise/FullPairwiseAlign.cpp:9: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo './'`./pairwise/FastPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FastPairwiseAlign.h:9, from ./pairwise/FastPairwiseAlign.cpp:10: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSFFileParser.o `test -f './fileInput/MSFFileParser.cpp' || echo './'`./fileInput/MSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileReader.o `test -f './fileInput/FileReader.cpp' || echo './'`./fileInput/FileReader.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./fileInput/FileReader.cpp:29: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PIRFileParser.o `test -f './fileInput/PIRFileParser.cpp' || echo './'`./fileInput/PIRFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RSFFileParser.o `test -f './fileInput/RSFFileParser.cpp' || echo './'`./fileInput/RSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o GDEFileParser.o `test -f './fileInput/GDEFileParser.cpp' || echo './'`./fileInput/GDEFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InFileStream.o `test -f './fileInput/InFileStream.cpp' || echo './'`./fileInput/InFileStream.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalFileParser.o `test -f './fileInput/ClustalFileParser.cpp' || echo './'`./fileInput/ClustalFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PearsonFileParser.o `test -f './fileInput/PearsonFileParser.cpp' || echo './'`./fileInput/PearsonFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileParser.o `test -f './fileInput/FileParser.cpp' || echo './'`./fileInput/FileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o EMBLFileParser.o `test -f './fileInput/EMBLFileParser.cpp' || echo './'`./fileInput/EMBLFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedClusterTree.o `test -f './tree/UPGMA/RootedClusterTree.cpp' || echo './'`./tree/UPGMA/RootedClusterTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/../ClusterTree.h:20, from ./tree/UPGMA/RootedClusterTree.h:8, from ./tree/UPGMA/RootedClusterTree.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UPGMAAlgorithm.o `test -f './tree/UPGMA/UPGMAAlgorithm.cpp' || echo './'`./tree/UPGMA/UPGMAAlgorithm.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/UPGMAAlgorithm.h:8, from ./tree/UPGMA/UPGMAAlgorithm.cpp:4: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Node.o `test -f './tree/UPGMA/Node.cpp' || echo './'`./tree/UPGMA/Node.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedGuideTree.o `test -f './tree/UPGMA/RootedGuideTree.cpp' || echo './'`./tree/UPGMA/RootedGuideTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedGuideTree.cpp:10: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedTreeOutput.o `test -f './tree/UPGMA/RootedTreeOutput.cpp' || echo './'`./tree/UPGMA/RootedTreeOutput.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedTreeOutput.h:15, from ./tree/UPGMA/RootedTreeOutput.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Tree.o `test -f './tree/Tree.cpp' || echo './'`./tree/Tree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/Tree.h:13, from ./tree/Tree.cpp:10: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTree.o `test -f './tree/ClusterTree.cpp' || echo './'`./tree/ClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/ClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o TreeInterface.o `test -f './tree/TreeInterface.cpp' || echo './'`./tree/TreeInterface.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/TreeInterface.h:19, from ./tree/TreeInterface.cpp:15: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UnRootedClusterTree.o `test -f './tree/UnRootedClusterTree.cpp' || echo './'`./tree/UnRootedClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/UnRootedClusterTree.h:8, from ./tree/UnRootedClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTreeOutput.o `test -f './tree/ClusterTreeOutput.cpp' || echo './'`./tree/ClusterTreeOutput.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTreeOutput.h:11, from ./tree/ClusterTreeOutput.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RandomGenerator.o `test -f './tree/RandomGenerator.cpp' || echo './'`./tree/RandomGenerator.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o NJTree.o `test -f './tree/NJTree.cpp' || echo './'`./tree/NJTree.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentSteps.o `test -f './tree/AlignmentSteps.cpp' || echo './'`./tree/AlignmentSteps.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InteractiveMenu.o `test -f './interface/InteractiveMenu.cpp' || echo './'`./interface/InteractiveMenu.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/InteractiveMenu.h:15, from ./interface/InteractiveMenu.cpp:23: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': ./interface/InteractiveMenu.cpp:1190:29: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o CommandLineParser.o `test -f './interface/CommandLineParser.cpp' || echo './'`./interface/CommandLineParser.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/CommandLineParser.h:18, from ./interface/CommandLineParser.cpp:13: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SubMatrix.o `test -f './substitutionMatrix/SubMatrix.cpp' || echo './'`./substitutionMatrix/SubMatrix.cpp In file included from ./substitutionMatrix/SubMatrix.cpp:15:0: ./substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Iteration.o `test -f './multipleAlign/Iteration.cpp' || echo './'`./multipleAlign/Iteration.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/Iteration.h:8, from ./multipleAlign/Iteration.cpp:13: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./multipleAlign/Iteration.cpp:231:32: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSA.o `test -f './multipleAlign/MSA.cpp' || echo './'`./multipleAlign/MSA.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/MSA.h:10, from ./multipleAlign/MSA.cpp:16: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MyersMillerProfileAlign.o `test -f './multipleAlign/MyersMillerProfileAlign.cpp' || echo './'`./multipleAlign/MyersMillerProfileAlign.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileAlignAlgorithm.h:10, from ./multipleAlign/MyersMillerProfileAlign.h:10, from ./multipleAlign/MyersMillerProfileAlign.cpp:10: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileStandard.o `test -f './multipleAlign/ProfileStandard.cpp' || echo './'`./multipleAlign/ProfileStandard.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileStandard.h:9, from ./multipleAlign/ProfileStandard.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileWithSub.o `test -f './multipleAlign/ProfileWithSub.cpp' || echo './'`./multipleAlign/ProfileWithSub.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileWithSub.h:9, from ./multipleAlign/ProfileWithSub.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileBase.o `test -f './multipleAlign/ProfileBase.cpp' || echo './'`./multipleAlign/ProfileBase.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/ProfileBase.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o LowScoreSegProfile.o `test -f './multipleAlign/LowScoreSegProfile.cpp' || echo './'`./multipleAlign/LowScoreSegProfile.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/LowScoreSegProfile.h:13, from ./multipleAlign/LowScoreSegProfile.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o OutputFile.o `test -f './general/OutputFile.cpp' || echo './'`./general/OutputFile.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UserParameters.o `test -f './general/UserParameters.cpp' || echo './'`./general/UserParameters.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Utility.o `test -f './general/Utility.cpp' || echo './'`./general/Utility.cpp ./general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': ./general/Utility.cpp:183:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ ./general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': ./general/Utility.cpp:221:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InvalidCombination.o `test -f './general/InvalidCombination.cpp' || echo './'`./general/InvalidCombination.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o DebugLog.o `test -f './general/DebugLog.cpp' || echo './'`./general/DebugLog.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalWResources.o `test -f './general/ClustalWResources.cpp' || echo './'`./general/ClustalWResources.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o VectorOutOfRange.o `test -f './general/VectorOutOfRange.cpp' || echo './'`./general/VectorOutOfRange.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SymMatrix.o `test -f './general/SymMatrix.cpp' || echo './'`./general/SymMatrix.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Stats.o `test -f './general/Stats.cpp' || echo './'`./general/Stats.cpp In file included from ./general/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./general/../alignment/Alignment.h:42, from ./general/Stats.cpp:15: ./general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Help.o `test -f './Help.cpp' || echo './'`./Help.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Alignment.o `test -f './alignment/Alignment.cpp' || echo './'`./alignment/Alignment.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/Alignment.cpp:25: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentOutput.o `test -f './alignment/AlignmentOutput.cpp' || echo './'`./alignment/AlignmentOutput.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/AlignmentOutput.h:24, from ./alignment/AlignmentOutput.cpp:27: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ObjectiveScore.o `test -f './alignment/ObjectiveScore.cpp' || echo './'`./alignment/ObjectiveScore.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/ObjectiveScore.h:15, from ./alignment/ObjectiveScore.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Sequence.o `test -f './alignment/Sequence.cpp' || echo './'`./alignment/Sequence.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Clustal.o `test -f './Clustal.cpp' || echo './'`./Clustal.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./Clustal.h:18, from ./Clustal.cpp:27: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o main.o `test -f './main.cpp' || echo './'`./main.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./main.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o clustalw2 FullPairwiseAlign.o FastPairwiseAlign.o MSFFileParser.o FileReader.o PIRFileParser.o RSFFileParser.o GDEFileParser.o InFileStream.o ClustalFileParser.o PearsonFileParser.o FileParser.o EMBLFileParser.o RootedClusterTree.o UPGMAAlgorithm.o Node.o RootedGuideTree.o RootedTreeOutput.o Tree.o ClusterTree.o TreeInterface.o UnRootedClusterTree.o ClusterTreeOutput.o RandomGenerator.o NJTree.o AlignmentSteps.o InteractiveMenu.o CommandLineParser.o SubMatrix.o Iteration.o MSA.o MyersMillerProfileAlign.o ProfileStandard.o ProfileWithSub.o ProfileBase.o LowScoreSegProfile.o OutputFile.o UserParameters.o Utility.o InvalidCombination.o DebugLog.o ClustalWResources.o VectorOutOfRange.o SymMatrix.o Stats.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o Clustal.o main.o Iteration.o: In function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /build/buildd/clustalw-2.1+lgpl/src/./multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_auto_test -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making check in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making check in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making install in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal" make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making install in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin" /usr/bin/install -c clustalw2 '/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_install # We have to ask upstream if it is important for them that the binary is named clustalw2 mv /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw2 /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw # That is a bit ugly and should be better investigated. rmdir /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal/ make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installexamples -a dh_installman -a dh_installmenu -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: clustalw dh_strip debug symbol extraction: packages to act on: clustalw dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `clustalw-dbgsym' in `../clustalw-dbgsym_2.1+lgpl-3_powerpc.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing clustalw (in debian/clustalw); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw/DEBIAN/control, package clustalw, directory debian/clustalw .. removing usr/share/doc/clustalw/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalw/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package clustalw took 0 s dpkg-deb: warning: 'debian/clustalw/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw' in `../clustalw_2.1+lgpl-3_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../clustalw_2.1+lgpl-3_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-2.1+lgpl dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131114-1731 Publishing debug debs. chroot-autobuild/build/buildd/clustalw_2.1+lgpl-3_powerpc.deb: new debian package, version 2.0. size 358362 bytes: control archive= 1435 bytes. 1178 bytes, 23 lines control 878 bytes, 12 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: clustalw Version: 2.1+lgpl-3 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 849 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Suggests: clustalx, seaview Enhances: bioperl-run, emboss, t-coffee Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: global multiple nucleotide or peptide sequence alignment This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted. . The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM. chroot-autobuild/build/buildd/clustalw_2.1+lgpl-3_powerpc.deb: drwxr-xr-x root/root 0 2013-11-14 17:31 ./ drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/ drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/ drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/menu/ -rw-r--r-- root/root 193 2013-11-14 08:26 ./usr/share/menu/clustalw drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/doc/clustalw/ -rw-r--r-- root/root 715 2010-09-09 14:26 ./usr/share/doc/clustalw/README -rw-r--r-- root/root 2091 2013-11-14 08:26 ./usr/share/doc/clustalw/copyright -rw-r--r-- root/root 2196 2013-11-14 17:31 ./usr/share/doc/clustalw/changelog.Debian.gz -rw-r--r-- root/root 821 2013-11-14 08:26 ./usr/share/doc/clustalw/README.Debian drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/doc/clustalw/examples/ drwxr-xr-x root/root 0 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/ -rw-r--r-- root/root 157 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/seq -rw-r--r-- root/root 1007 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc.data -rw-r--r-- root/root 552 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/Makefile -rw-r--r-- root/root 1013 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc2.data drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/clustalw/ -rw-r--r-- root/root 33752 2010-11-12 16:53 ./usr/share/clustalw/clustalw_help drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/man/ drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/share/man/man1/ -rw-r--r-- root/root 4184 2013-11-14 17:31 ./usr/share/man/man1/clustalw.1.gz drwxr-xr-x root/root 0 2013-11-14 17:31 ./usr/bin/ -rwxr-xr-x root/root 762760 2013-11-14 17:31 ./usr/bin/clustalw clustalw_2.1+lgpl-3_powerpc.changes: Format: 1.8 Date: Thu, 14 Nov 2013 09:07:02 +0100 Source: clustalw Binary: clustalw Architecture: powerpc Version: 2.1+lgpl-3 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Andreas Tille Description: clustalw - global multiple nucleotide or peptide sequence alignment Changes: clustalw (2.1+lgpl-3) unstable; urgency=low . * debian/upstream: very small fix to prevent bibcheck warning * debian/control: - cme fix dpkg-control - update direct link to homepage - debhelper 9 - canonical Vcs URLs - remove cdbs from Build-Depends * debian/rules: use dh * debian/copyright: DEP5 Checksums-Sha1: af9889b06cd69c4f95c8bf0b9c272f53b41da219 358362 clustalw_2.1+lgpl-3_powerpc.deb Checksums-Sha256: 3f4254aaf45792e454b6aefb85624c5ebc6ca22740df8d36846e232ce3c34ed7 358362 clustalw_2.1+lgpl-3_powerpc.deb Files: 2378a3b040a4fd768cfa36496fdd9569 358362 science optional clustalw_2.1+lgpl-3_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131114-1731 Build needed 00:01:16, 31892k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5231237'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5231237/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5231237'] Unmounting chroot for build PACKAGEBUILD-5231237... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5231237'] Removing build PACKAGEBUILD-5231237