RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux allspice 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 17 Nov 12:45:38 ntpdate[21337]: adjust time server 10.211.37.1 offset 0.000662 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5239197', '/home/buildd/filecache-default/37b791c418443a1a9f244249f7640827adb86fb0'] Unpacking chroot for build PACKAGEBUILD-5239197 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5239197'] Mounting chroot for build PACKAGEBUILD-5239197 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5239197', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5239197 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5239197', 'amd64'] Updating debian chroot for build PACKAGEBUILD-5239197 Ign http://ftpmaster.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://archive-team.internal trusty Release [730 B] Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [49.6 kB] Get:7 http://ftpmaster.internal trusty-security Release [49.6 kB] Get:8 http://archive-team.internal trusty/main amd64 Packages Get:9 http://ftpmaster.internal trusty-updates Release [49.6 kB] Get:10 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Ign http://archive-team.internal trusty/main Translation-en Get:11 http://ftpmaster.internal trusty/main amd64 Packages [1258 kB] Get:12 http://ftpmaster.internal trusty/restricted amd64 Packages [9275 B] Get:13 http://ftpmaster.internal trusty/universe amd64 Packages [5764 kB] Get:14 http://ftpmaster.internal trusty/multiverse amd64 Packages [132 kB] Get:15 http://ftpmaster.internal trusty/main Translation-en [726 kB] Get:16 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:17 http://ftpmaster.internal trusty/restricted Translation-en [2660 B] Get:18 http://ftpmaster.internal trusty/universe Translation-en [3964 kB] Get:19 http://ftpmaster.internal trusty-security/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal trusty-security/restricted amd64 Packages [14 B] Get:21 http://ftpmaster.internal trusty-security/universe amd64 Packages [14 B] Get:22 http://ftpmaster.internal trusty-security/multiverse amd64 Packages [14 B] Get:23 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal trusty-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal trusty-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal trusty-updates/main amd64 Packages [14 B] Get:28 http://ftpmaster.internal trusty-updates/restricted amd64 Packages [14 B] Get:29 http://ftpmaster.internal trusty-updates/universe amd64 Packages [14 B] Get:30 http://ftpmaster.internal trusty-updates/multiverse amd64 Packages [14 B] Get:31 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal trusty-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal trusty-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal trusty-proposed/main amd64 Packages [34.9 kB] Get:36 http://ftpmaster.internal trusty-proposed/restricted amd64 Packages [14 B] Get:37 http://ftpmaster.internal trusty-proposed/universe amd64 Packages [163 kB] Get:38 http://ftpmaster.internal trusty-proposed/multiverse amd64 Packages [3567 B] Get:39 http://ftpmaster.internal trusty-proposed/main Translation-en [19.0 kB] Get:40 http://ftpmaster.internal trusty-proposed/multiverse Translation-en [2751 B] Get:41 http://ftpmaster.internal trusty-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal trusty-proposed/universe Translation-en [94.9 kB] Fetched 12.5 MB in 4s (3027 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libdb5.3 libffi6 libprocps1 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd binutils busybox-initramfs bzip2 coreutils cpp-4.8 debconf diffutils dpkg dpkg-dev g++-4.8 gcc-4.8 gcc-4.8-base gnupg gpgv grep ifupdown initramfs-tools initramfs-tools-bin iproute iproute2 kmod libapt-pkg4.12 libasan0 libasn1-8-heimdal libatomic1 libbz2-1.0 libcloog-isl4 libcurl3-gnutls libdbus-1-3 libdpkg-perl libdrm2 libgcc-4.8-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl10 libitm1 libjson-c2 libjson0 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 libnih-dbus1 libnih1 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpng12-0 libprocps0 libquadmath0 libroken18-heimdal libsasl2-2 libsasl2-modules libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsqlite3-0 libstdc++-4.8-dev libstdc++6 libtsan0 libudev1 libwind0-heimdal linux-libc-dev module-init-tools patch perl perl-base perl-modules procps sed tar udev upstart 93 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 59.4 MB of archives. After this operation, 4833 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files coreutils diffutils dpkg grep libdb5.3 perl perl-base perl-modules bzip2 libbz2-1.0 sed tar libitm1 libgomp1 libasan0 gcc-4.8-base libgcc1 libatomic1 libtsan0 libquadmath0 libmpfr4 cpp-4.8 binutils libstdc++-4.8-dev g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++6 libgmp10 libcloog-isl4 libisl10 libapt-pkg4.12 gpgv gnupg apt base-passwd debconf libpam0g libselinux1 libpam-modules-bin libpam-modules libsemanage-common libsemanage1 libsepol1 libffi6 libp11-kit0 libsqlite3-0 libdbus-1-3 libdrm2 libjson-c2 libkmod2 libnih-dbus1 libnih1 libpng12-0 libprocps1 procps udev libudev1 kmod module-init-tools libroken18-heimdal libasn1-8-heimdal libkeyutils1 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-modules-db libsasl2-2 libldap-2.4-2 libcurl3-gnutls libprocps0 libpam-runtime adduser busybox-initramfs iproute2 ifupdown initramfs-tools initramfs-tools-bin libjson0 upstart apt-transport-https libsasl2-modules dpkg-dev libdpkg-perl patch iproute linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files amd64 6.12ubuntu5 [61.8 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main coreutils amd64 8.21-1ubuntu3 [2487 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main diffutils amd64 1:3.3-1 [206 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dpkg amd64 1.17.1ubuntu1 [2018 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main grep amd64 2.14-4 [298 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libdb5.3 amd64 5.3.28-3 [786 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main perl amd64 5.18.1-4build1 [4469 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main perl-base amd64 5.18.1-4build1 [1582 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.1-4build1 [3921 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main bzip2 amd64 1.0.6-5 [38.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libbz2-1.0 amd64 1.0.6-5 [33.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main sed amd64 4.2.2-2ubuntu1 [143 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main tar amd64 1.27-3 [234 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libitm1 amd64 4.8.2-4ubuntu1 [37.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgomp1 amd64 4.8.2-4ubuntu1 [27.0 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libasan0 amd64 4.8.2-4ubuntu1 [75.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gcc-4.8-base amd64 4.8.2-4ubuntu1 [15.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcc1 amd64 1:4.8.2-4ubuntu1 [43.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libatomic1 amd64 4.8.2-4ubuntu1 [10.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libtsan0 amd64 4.8.2-4ubuntu1 [117 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libquadmath0 amd64 4.8.2-4ubuntu1 [139 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libmpfr4 amd64 3.1.2-1 [203 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty-proposed/main cpp-4.8 amd64 4.8.2-4ubuntu1 [5832 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty-proposed/main binutils amd64 2.23.90.20131116-1ubuntu1 [3581 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libstdc++-4.8-dev amd64 4.8.2-4ubuntu1 [1751 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty-proposed/main g++-4.8 amd64 4.8.2-4ubuntu1 [8613 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty-proposed/main gcc-4.8 amd64 4.8.2-4ubuntu1 [6633 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcc-4.8-dev amd64 4.8.2-4ubuntu1 [2790 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libstdc++6 amd64 4.8.2-4ubuntu1 [325 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgmp10 amd64 2:5.1.2+dfsg-3ubuntu1 [252 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libcloog-isl4 amd64 0.18.1-1 [67.8 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libisl10 amd64 0.12.1-1 [524 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 amd64 0.9.9.1~ubuntu4 [825 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main gpgv amd64 1.4.15-1.1ubuntu1 [185 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main gnupg amd64 1.4.15-1.1ubuntu1 [785 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main apt amd64 0.9.9.1~ubuntu4 [1231 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main base-passwd amd64 3.5.28 [39.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main debconf all 1.5.51ubuntu1 [148 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libpam0g amd64 1.1.3-10ubuntu1 [62.2 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libselinux1 amd64 2.2.1-1ubuntu1 [67.6 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules-bin amd64 1.1.3-10ubuntu1 [48.0 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules amd64 1.1.3-10ubuntu1 [284 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libsemanage-common all 2.2-1 [6488 B] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libsemanage1 amd64 2.2-1 [85.6 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main libsepol1 amd64 2.2-1 [126 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 amd64 3.0.13-4 [19.4 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libp11-kit0 amd64 0.20.1-2ubuntu1 [97.6 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 amd64 3.8.1-1ubuntu1 [390 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main libdbus-1-3 amd64 1.6.18-0ubuntu1 [154 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 amd64 2.4.46-4 [26.7 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main libjson-c2 amd64 0.11-3ubuntu1 [23.8 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main libkmod2 amd64 15-0ubuntu2 [44.1 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main libnih-dbus1 amd64 1.0.3-4ubuntu24 [16.8 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libnih1 amd64 1.0.3-4ubuntu24 [55.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-0 amd64 1.2.49-5ubuntu1 [129 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main libprocps1 amd64 1:3.3.8-2ubuntu1 [36.1 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main procps amd64 1:3.3.8-2ubuntu1 [250 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main udev amd64 204-5ubuntu6 [1043 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main libudev1 amd64 204-5ubuntu6 [41.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main kmod amd64 15-0ubuntu2 [95.9 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main module-init-tools all 15-0ubuntu2 [1874 B] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main libroken18-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [45.6 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main libasn1-8-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [218 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main libkeyutils1 amd64 1.5.6-1 [7318 B] Get:65 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 amd64 1.11.3+dfsg-3ubuntu2 [102 kB] Get:66 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 amd64 1.11.3+dfsg-3ubuntu2 [133 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 amd64 1.11.3+dfsg-3ubuntu2 [355 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 amd64 1.11.3+dfsg-3ubuntu2 [33.5 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main libhcrypto4-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [103 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main libheimbase1-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [32.4 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main libwind0-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [77.5 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main libhx509-5-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [125 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-26-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [230 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/main libheimntlm0-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [15.8 kB] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi3-heimdal amd64 1.6~git20120403+dfsg1-3ubuntu0.2 [108 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-modules-db amd64 2.1.25.dfsg1-17build1 [14.9 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-2 amd64 2.1.25.dfsg1-17build1 [56.5 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main libldap-2.4-2 amd64 2.4.31-1+nmu2ubuntu5 [186 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main libcurl3-gnutls amd64 7.33.0-1ubuntu1 [190 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty/main libprocps0 amd64 1:3.3.3-2ubuntu8 [35.9 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty/main libpam-runtime all 1.1.3-10ubuntu1 [40.9 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main adduser all 3.113+nmu3ubuntu3 [169 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs amd64 1:1.21.0-1ubuntu1 [185 kB] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main iproute2 amd64 3.11.0-1 [532 kB] Get:85 http://ftpmaster.internal/ubuntu/ trusty/main ifupdown amd64 0.7.46.1ubuntu1 [58.1 kB] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools all 0.103ubuntu2 [49.2 kB] Get:87 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools-bin amd64 0.103ubuntu2 [9950 B] Get:88 http://ftpmaster.internal/ubuntu/ trusty/main libjson0 amd64 0.11-3ubuntu1 [1018 B] Get:89 http://ftpmaster.internal/ubuntu/ trusty-proposed/main upstart amd64 1.11-0ubuntu1 [630 kB] Get:90 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https amd64 0.9.9.1~ubuntu4 [16.6 kB] Get:91 http://ftpmaster.internal/ubuntu/ trusty/main libsasl2-modules amd64 2.1.25.dfsg1-17build1 [64.3 kB] Get:92 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dpkg-dev all 1.17.1ubuntu1 [726 kB] Get:93 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libdpkg-perl all 1.17.1ubuntu1 [195 kB] Get:94 http://ftpmaster.internal/ubuntu/ trusty/main patch amd64 2.7.1-4 [93.8 kB] Get:95 http://ftpmaster.internal/ubuntu/ trusty/main iproute all 1:3.11.0-1 [2324 B] Get:96 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev amd64 3.12.0-2.7 [956 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.4 MB in 4s (14.2 MB/s) (Reading database ... 12079 files and directories currently installed.) Preparing to replace base-files 6.12ubuntu4 (using .../base-files_6.12ubuntu5_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (6.12ubuntu5) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 12079 files and directories currently installed.) Preparing to replace coreutils 8.20-3ubuntu5 (using .../coreutils_8.21-1ubuntu3_amd64.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.21-1ubuntu3) ... (Reading database ... 12081 files and directories currently installed.) Preparing to replace diffutils 1:3.2-8 (using .../diffutils_1%3a3.3-1_amd64.deb) ... Unpacking replacement diffutils ... Setting up diffutils (1:3.3-1) ... (Reading database ... 12081 files and directories currently installed.) Preparing to replace dpkg 1.16.12ubuntu1 (using .../dpkg_1.17.1ubuntu1_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.17.1ubuntu1) ... (Reading database ... 12064 files and directories currently installed.) Preparing to replace grep 2.14-3 (using .../archives/grep_2.14-4_amd64.deb) ... Unpacking replacement grep ... Setting up grep (2.14-4) ... Selecting previously unselected package libdb5.3:amd64. (Reading database ... 12064 files and directories currently installed.) Unpacking libdb5.3:amd64 (from .../libdb5.3_5.3.28-3_amd64.deb) ... Setting up libdb5.3:amd64 (5.3.28-3) ... Processing triggers for libc-bin ... (Reading database ... 12070 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4build1_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4build1_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4build1) ... (Reading database ... 11972 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4build1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace bzip2 1.0.6-4 (using .../bzip2_1.0.6-5_amd64.deb) ... Unpacking replacement bzip2 ... Preparing to replace libbz2-1.0:amd64 1.0.6-4 (using .../libbz2-1.0_1.0.6-5_amd64.deb) ... Unpacking replacement libbz2-1.0:amd64 ... Setting up libbz2-1.0:amd64 (1.0.6-5) ... Processing triggers for libc-bin ... (Reading database ... 12009 files and directories currently installed.) Preparing to replace sed 4.2.2-1ubuntu1 (using .../sed_4.2.2-2ubuntu1_amd64.deb) ... Unpacking replacement sed ... Setting up sed (4.2.2-2ubuntu1) ... (Reading database ... 12009 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-8 (using .../archives/tar_1.27-3_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.27-3) ... (Reading database ... 12010 files and directories currently installed.) Preparing to replace libitm1:amd64 4.8.1-10ubuntu8 (using .../libitm1_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libitm1:amd64 ... Preparing to replace libgomp1:amd64 4.8.1-10ubuntu8 (using .../libgomp1_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... Preparing to replace libasan0:amd64 4.8.1-10ubuntu8 (using .../libasan0_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libasan0:amd64 ... Preparing to replace gcc-4.8-base:amd64 4.8.1-10ubuntu8 (using .../gcc-4.8-base_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8-base:amd64 ... Setting up gcc-4.8-base:amd64 (4.8.2-4ubuntu1) ... (Reading database ... 12010 files and directories currently installed.) Preparing to replace libgcc1:amd64 1:4.8.1-10ubuntu8 (using .../libgcc1_1%3a4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.8.2-4ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 12010 files and directories currently installed.) Preparing to replace libatomic1:amd64 4.8.1-10ubuntu8 (using .../libatomic1_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libatomic1:amd64 ... Preparing to replace libtsan0:amd64 4.8.1-10ubuntu8 (using .../libtsan0_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libtsan0:amd64 ... Preparing to replace libquadmath0:amd64 4.8.1-10ubuntu8 (using .../libquadmath0_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Preparing to replace libmpfr4:amd64 3.1.1-2 (using .../libmpfr4_3.1.2-1_amd64.deb) ... Unpacking replacement libmpfr4:amd64 ... Preparing to replace cpp-4.8 4.8.1-10ubuntu8 (using .../cpp-4.8_4.8.2-4ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace binutils 2.23.52.20130913-0ubuntu1 (using .../binutils_2.23.90.20131116-1ubuntu1_amd64.deb) ... Unpacking replacement binutils ... 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Unpacking replacement libsemanage1:amd64 ... Preparing to replace libsepol1:amd64 2.1.9-2 (using .../libsepol1_2.2-1_amd64.deb) ... Unpacking replacement libsepol1:amd64 ... Setting up libsepol1:amd64 (2.2-1) ... Setting up libsemanage1:amd64 (2.2-1) ... Processing triggers for libc-bin ... Selecting previously unselected package libffi6:amd64. (Reading database ... 12008 files and directories currently installed.) Unpacking libffi6:amd64 (from .../libffi6_3.0.13-4_amd64.deb) ... Preparing to replace libp11-kit0:amd64 0.18.3-2ubuntu1 (using .../libp11-kit0_0.20.1-2ubuntu1_amd64.deb) ... Unpacking replacement libp11-kit0:amd64 ... Preparing to replace libsqlite3-0:amd64 3.7.17-1ubuntu1 (using .../libsqlite3-0_3.8.1-1ubuntu1_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace libdbus-1-3:amd64 1.6.12-0ubuntu10 (using .../libdbus-1-3_1.6.18-0ubuntu1_amd64.deb) ... Unpacking replacement libdbus-1-3:amd64 ... 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Preparing to replace procps 1:3.3.3-2ubuntu7 (using .../procps_1%3a3.3.8-2ubuntu1_amd64.deb) ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking replacement procps ... Preparing to replace udev 204-0ubuntu18 (using .../udev_204-5ubuntu6_amd64.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:amd64 204-0ubuntu18 (using .../libudev1_204-5ubuntu6_amd64.deb) ... Unpacking replacement libudev1:amd64 ... Preparing to replace kmod 9-3ubuntu1 (using .../kmod_15-0ubuntu2_amd64.deb) ... Unpacking replacement kmod ... Preparing to replace module-init-tools 9-3ubuntu1 (using .../module-init-tools_15-0ubuntu2_all.deb) ... Unpacking replacement module-init-tools ... Preparing to replace libroken18-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libroken18-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libroken18-heimdal:amd64 ... Preparing to replace libasn1-8-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libasn1-8-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libasn1-8-heimdal:amd64 ... Preparing to replace libkeyutils1:amd64 1.5.5-7 (using .../libkeyutils1_1.5.6-1_amd64.deb) ... Unpacking replacement libkeyutils1:amd64 ... Preparing to replace libk5crypto3:amd64 1.10.1+dfsg-6.1ubuntu1 (using .../libk5crypto3_1.11.3+dfsg-3ubuntu2_amd64.deb) ... Unpacking replacement libk5crypto3:amd64 ... Preparing to replace libgssapi-krb5-2:amd64 1.10.1+dfsg-6.1ubuntu1 (using .../libgssapi-krb5-2_1.11.3+dfsg-3ubuntu2_amd64.deb) ... Unpacking replacement libgssapi-krb5-2:amd64 ... Preparing to replace libkrb5-3:amd64 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5-3_1.11.3+dfsg-3ubuntu2_amd64.deb) ... Unpacking replacement libkrb5-3:amd64 ... Preparing to replace libkrb5support0:amd64 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5support0_1.11.3+dfsg-3ubuntu2_amd64.deb) ... Unpacking replacement libkrb5support0:amd64 ... Preparing to replace libhcrypto4-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libhcrypto4-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libhcrypto4-heimdal:amd64 ... Preparing to replace libheimbase1-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libheimbase1-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libheimbase1-heimdal:amd64 ... Preparing to replace libwind0-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libwind0-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libwind0-heimdal:amd64 ... Preparing to replace libhx509-5-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libhx509-5-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libhx509-5-heimdal:amd64 ... Preparing to replace libkrb5-26-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libkrb5-26-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libkrb5-26-heimdal:amd64 ... Preparing to replace libheimntlm0-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libheimntlm0-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libheimntlm0-heimdal:amd64 ... Preparing to replace libgssapi3-heimdal:amd64 1.6~git20120403+dfsg1-3ubuntu0.1 (using .../libgssapi3-heimdal_1.6~git20120403+dfsg1-3ubuntu0.2_amd64.deb) ... Unpacking replacement libgssapi3-heimdal:amd64 ... Preparing to replace libsasl2-modules-db:amd64 2.1.25.dfsg1-17 (using .../libsasl2-modules-db_2.1.25.dfsg1-17build1_amd64.deb) ... Unpacking replacement libsasl2-modules-db:amd64 ... Preparing to replace libsasl2-2:amd64 2.1.25.dfsg1-17 (using .../libsasl2-2_2.1.25.dfsg1-17build1_amd64.deb) ... Unpacking replacement libsasl2-2:amd64 ... Preparing to replace libldap-2.4-2:amd64 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu5_amd64.deb) ... Unpacking replacement libldap-2.4-2:amd64 ... Preparing to replace libcurl3-gnutls:amd64 7.32.0-1ubuntu1 (using .../libcurl3-gnutls_7.33.0-1ubuntu1_amd64.deb) ... Unpacking replacement libcurl3-gnutls:amd64 ... Preparing to replace libprocps0:amd64 1:3.3.3-2ubuntu7 (using .../libprocps0_1%3a3.3.3-2ubuntu8_amd64.deb) ... Unpacking replacement libprocps0:amd64 ... Preparing to replace libpam-runtime 1.1.3-8ubuntu3 (using .../libpam-runtime_1.1.3-10ubuntu1_all.deb) ... Unpacking replacement libpam-runtime ... Setting up libpam-runtime (1.1.3-10ubuntu1) ... (Reading database ... 12030 files and directories currently installed.) Preparing to replace adduser 3.113+nmu3ubuntu2 (using .../adduser_3.113+nmu3ubuntu3_all.deb) ... Unpacking replacement adduser ... 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Preparing to replace apt-transport-https 0.9.9.1~ubuntu3 (using .../apt-transport-https_0.9.9.1~ubuntu4_amd64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace libsasl2-modules:amd64 2.1.25.dfsg1-17 (using .../libsasl2-modules_2.1.25.dfsg1-17build1_amd64.deb) ... Unpacking replacement libsasl2-modules:amd64 ... Preparing to replace dpkg-dev 1.16.12ubuntu1 (using .../dpkg-dev_1.17.1ubuntu1_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.12ubuntu1 (using .../libdpkg-perl_1.17.1ubuntu1_all.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace patch 2.7.1-3 (using .../patch_2.7.1-4_amd64.deb) ... Unpacking replacement patch ... Preparing to replace iproute 1:3.10.0-1ubuntu1 (using .../iproute_1%3a3.11.0-1_all.deb) ... Unpacking replacement iproute ... Preparing to replace linux-libc-dev:amd64 3.11.0-12.19 (using .../linux-libc-dev_3.12.0-2.7_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Setting up bzip2 (1.0.6-5) ... Setting up libitm1:amd64 (4.8.2-4ubuntu1) ... Setting up libgomp1:amd64 (4.8.2-4ubuntu1) ... Setting up libasan0:amd64 (4.8.2-4ubuntu1) ... Setting up libatomic1:amd64 (4.8.2-4ubuntu1) ... Setting up libtsan0:amd64 (4.8.2-4ubuntu1) ... Setting up libquadmath0:amd64 (4.8.2-4ubuntu1) ... Setting up libgmp10:amd64 (2:5.1.2+dfsg-3ubuntu1) ... Setting up libmpfr4:amd64 (3.1.2-1) ... Setting up libisl10:amd64 (0.12.1-1) ... Setting up libcloog-isl4:amd64 (0.18.1-1) ... Setting up cpp-4.8 (4.8.2-4ubuntu1) ... Setting up binutils (2.23.90.20131116-1ubuntu1) ... Setting up libgcc-4.8-dev:amd64 (4.8.2-4ubuntu1) ... Setting up libstdc++-4.8-dev:amd64 (4.8.2-4ubuntu1) ... Setting up gcc-4.8 (4.8.2-4ubuntu1) ... Setting up g++-4.8 (4.8.2-4ubuntu1) ... Setting up libffi6:amd64 (3.0.13-4) ... Setting up libp11-kit0:amd64 (0.20.1-2ubuntu1) ... Setting up libsqlite3-0:amd64 (3.8.1-1ubuntu1) ... Setting up libdbus-1-3:amd64 (1.6.18-0ubuntu1) ... Setting up libdrm2:amd64 (2.4.46-4) ... Setting up libjson-c2:amd64 (0.11-3ubuntu1) ... Setting up libkmod2:amd64 (15-0ubuntu2) ... Setting up libnih1:amd64 (1.0.3-4ubuntu24) ... Setting up libnih-dbus1:amd64 (1.0.3-4ubuntu24) ... Setting up libpng12-0:amd64 (1.2.49-5ubuntu1) ... Setting up libprocps1:amd64 (1:3.3.8-2ubuntu1) ... Setting up procps (1:3.3.8-2ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... Installing new version of config file /etc/init.d/procps ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libudev1:amd64 (204-5ubuntu6) ... Setting up udev (204-5ubuntu6) ... Installing new version of config file /etc/udev/udev.conf ... Installing new version of config file /etc/init/udevmonitor.conf ... Installing new version of config file /etc/init.d/udev ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up kmod (15-0ubuntu2) ... Setting up module-init-tools (15-0ubuntu2) ... Setting up libroken18-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libasn1-8-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libkeyutils1:amd64 (1.5.6-1) ... Setting up libkrb5support0:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libk5crypto3:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libkrb5-3:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libgssapi-krb5-2:amd64 (1.11.3+dfsg-3ubuntu2) ... Setting up libhcrypto4-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libheimbase1-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libwind0-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libhx509-5-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libkrb5-26-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libheimntlm0-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libgssapi3-heimdal:amd64 (1.6~git20120403+dfsg1-3ubuntu0.2) ... Setting up libsasl2-modules-db:amd64 (2.1.25.dfsg1-17build1) ... Setting up libsasl2-2:amd64 (2.1.25.dfsg1-17build1) ... Setting up libldap-2.4-2:amd64 (2.4.31-1+nmu2ubuntu5) ... Setting up libcurl3-gnutls:amd64 (7.33.0-1ubuntu1) ... Setting up libprocps0:amd64 (1:3.3.3-2ubuntu8) ... Setting up adduser (3.113+nmu3ubuntu3) ... Setting up busybox-initramfs (1:1.21.0-1ubuntu1) ... Setting up iproute2 (3.11.0-1) ... Setting up ifupdown (0.7.46.1ubuntu1) ... Installing new version of config file /etc/init.d/networking ... Setting up initramfs-tools-bin (0.103ubuntu2) ... Setting up initramfs-tools (0.103ubuntu2) ... update-initramfs: deferring update (trigger activated) Setting up libjson0:amd64 (0.11-3ubuntu1) ... Setting up upstart (1.11-0ubuntu1) ... Setting up apt-transport-https (0.9.9.1~ubuntu4) ... Setting up libsasl2-modules:amd64 (2.1.25.dfsg1-17build1) ... Setting up patch (2.7.1-4) ... Setting up iproute (1:3.11.0-1) ... Setting up linux-libc-dev:amd64 (3.12.0-2.7) ... Setting up perl-modules (5.18.1-4build1) ... Setting up perl (5.18.1-4build1) ... Setting up libdpkg-perl (1.17.1ubuntu1) ... Setting up dpkg-dev (1.17.1ubuntu1) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5239197', 'amd64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=multiverse', 'clustalw_2.1+lgpl-3ubuntu1.dsc'] Initiating build PACKAGEBUILD-5239197 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Automatic build of clustalw_2.1+lgpl-3ubuntu1 on allspice by sbuild/amd64 1.170.5 Build started at 20131117-1246 ****************************************************************************** clustalw_2.1+lgpl-3ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), autotools-dev Checking for already installed source dependencies... debhelper: missing autotools-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps0 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autotools-dev bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 11.6 MB of archives. After this operation, 39.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libcroco3 libunistring0 python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base autotools-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 amd64 2.1.0-4 [129 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 amd64 5.11-2ubuntu4 [170 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal amd64 3.3.2-7ubuntu4 [616 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib amd64 3.3.2-7ubuntu4 [2687 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal amd64 3.3.2-7ubuntu4 [1757 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 amd64 0.18.3.1-1ubuntu1 [7244 B] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 amd64 2.38.1-1 [1015 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 amd64 1.2.4-1 [27.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 amd64 2.9.1+dfsg1-3ubuntu2 [693 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main groff-base amd64 1.22.2-3 [719 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main man-db amd64 2.6.5-2 [710 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 amd64 0.6.8-2 [82.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 amd64 0.9.3-5ubuntu1 [430 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 amd64 3.3.2-7ubuntu4 [128 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3-minimal amd64 3.3.2-17 [26.6 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libpython3-stdlib amd64 3.3.2-17 [7864 B] Get:19 http://ftpmaster.internal/ubuntu/ trusty-proposed/main python3 amd64 3.3.2-17 [9196 B] Get:20 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu2 [60.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main file amd64 5.11-2ubuntu4 [18.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base amd64 0.18.3.1-1ubuntu1 [78.9 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gettext amd64 0.18.3.1-1ubuntu1 [1033 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu34 [23.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu34 [7772 B] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.6 MB in 0s (19.3 MB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 12030 files and directories currently installed.) Unpacking libexpat1:amd64 (from .../libexpat1_2.1.0-4_amd64.deb) ... Selecting previously unselected package libmagic1:amd64. Unpacking libmagic1:amd64 (from .../libmagic1_5.11-2ubuntu4_amd64.deb) ... Selecting previously unselected package libpython3.3-minimal:amd64. Unpacking libpython3.3-minimal:amd64 (from .../libpython3.3-minimal_3.3.2-7ubuntu4_amd64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:amd64. Unpacking libpython3.3-stdlib:amd64 (from .../libpython3.3-stdlib_3.3.2-7ubuntu4_amd64.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-7ubuntu4_amd64.deb) ... Selecting previously unselected package libasprintf0c2:amd64. 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Setting up libexpat1:amd64 (2.1.0-4) ... Setting up libmagic1:amd64 (5.11-2ubuntu4) ... Setting up libpython3.3-minimal:amd64 (3.3.2-7ubuntu4) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:amd64 (3.3.2-7ubuntu4) ... Setting up python3.3-minimal (3.3.2-7ubuntu4) ... Setting up libasprintf0c2:amd64 (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:amd64 (2.38.1-1) ... No schema files found: doing nothing. Setting up libpipeline1:amd64 (1.2.4-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:amd64 (0.6.8-2) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu1) ... Setting up python3.3 (3.3.2-7ubuntu4) ... Setting up python3-minimal (3.3.2-17) ... Setting up libpython3-stdlib:amd64 (3.3.2-17) ... Setting up file (5.11-2ubuntu4) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up autotools-dev (20130810.1) ... Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20131021-1ubuntu2) ... Setting up python3 (3.3.2-17) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu34) ... Setting up dh-apparmor (2.8.0-0ubuntu34) ... Setting up debhelper (9.20130921ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.17.1ubuntu1 gcc-4.8_4.8.2-4ubuntu1 g++-4.8_4.8.2-4ubuntu1 binutils_2.23.90.20131116-1ubuntu1 libstdc++-4.8-dev_4.8.2-4ubuntu1 libstdc++6_4.8.2-4ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sun Nov 17 12:43:58 2013 UTC using DSA key ID C6CEA0C9 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw_2.1+lgpl-3ubuntu1.dsc dpkg-source: info: extracting clustalw in clustalw-2.1+lgpl dpkg-source: info: unpacking clustalw_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalw_2.1+lgpl-3ubuntu1.debian.tar.gz dpkg-buildpackage: source package clustalw dpkg-buildpackage: source version 2.1+lgpl-3ubuntu1 dpkg-buildpackage: source distribution trusty dpkg-source --before-build clustalw-2.1+lgpl dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir dh_auto_clean dh_autotools-dev_restoreconfig dh_clean debian/rules build-arch dh build-arch --with autotools_dev dh_testdir -a dh_autotools-dev_updateconfig -a dh_auto_configure -a configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu building for linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make sets $(MAKE)... (cached) yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... no checking for an ANSI C-conforming const... yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes configure: creating ./config.status config.status: creating Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/clustalw_version.h config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making all in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making all in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make all-recursive make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo './'`./pairwise/FullPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FullPairwiseAlign.h:9, from ./pairwise/FullPairwiseAlign.cpp:9: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo './'`./pairwise/FastPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FastPairwiseAlign.h:9, from ./pairwise/FastPairwiseAlign.cpp:10: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSFFileParser.o `test -f './fileInput/MSFFileParser.cpp' || echo './'`./fileInput/MSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileReader.o `test -f './fileInput/FileReader.cpp' || echo './'`./fileInput/FileReader.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./fileInput/FileReader.cpp:29: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PIRFileParser.o `test -f './fileInput/PIRFileParser.cpp' || echo './'`./fileInput/PIRFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RSFFileParser.o `test -f './fileInput/RSFFileParser.cpp' || echo './'`./fileInput/RSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o GDEFileParser.o `test -f './fileInput/GDEFileParser.cpp' || echo './'`./fileInput/GDEFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InFileStream.o `test -f './fileInput/InFileStream.cpp' || echo './'`./fileInput/InFileStream.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalFileParser.o `test -f './fileInput/ClustalFileParser.cpp' || echo './'`./fileInput/ClustalFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PearsonFileParser.o `test -f './fileInput/PearsonFileParser.cpp' || echo './'`./fileInput/PearsonFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileParser.o `test -f './fileInput/FileParser.cpp' || echo './'`./fileInput/FileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o EMBLFileParser.o `test -f './fileInput/EMBLFileParser.cpp' || echo './'`./fileInput/EMBLFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedClusterTree.o `test -f './tree/UPGMA/RootedClusterTree.cpp' || echo './'`./tree/UPGMA/RootedClusterTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/../ClusterTree.h:20, from ./tree/UPGMA/RootedClusterTree.h:8, from ./tree/UPGMA/RootedClusterTree.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UPGMAAlgorithm.o `test -f './tree/UPGMA/UPGMAAlgorithm.cpp' || echo './'`./tree/UPGMA/UPGMAAlgorithm.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/UPGMAAlgorithm.h:8, from ./tree/UPGMA/UPGMAAlgorithm.cpp:4: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Node.o `test -f './tree/UPGMA/Node.cpp' || echo './'`./tree/UPGMA/Node.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedGuideTree.o `test -f './tree/UPGMA/RootedGuideTree.cpp' || echo './'`./tree/UPGMA/RootedGuideTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedGuideTree.cpp:10: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedTreeOutput.o `test -f './tree/UPGMA/RootedTreeOutput.cpp' || echo './'`./tree/UPGMA/RootedTreeOutput.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedTreeOutput.h:15, from ./tree/UPGMA/RootedTreeOutput.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Tree.o `test -f './tree/Tree.cpp' || echo './'`./tree/Tree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/Tree.h:13, from ./tree/Tree.cpp:10: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTree.o `test -f './tree/ClusterTree.cpp' || echo './'`./tree/ClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/ClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o TreeInterface.o `test -f './tree/TreeInterface.cpp' || echo './'`./tree/TreeInterface.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/TreeInterface.h:19, from ./tree/TreeInterface.cpp:15: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UnRootedClusterTree.o `test -f './tree/UnRootedClusterTree.cpp' || echo './'`./tree/UnRootedClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/UnRootedClusterTree.h:8, from ./tree/UnRootedClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTreeOutput.o `test -f './tree/ClusterTreeOutput.cpp' || echo './'`./tree/ClusterTreeOutput.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTreeOutput.h:11, from ./tree/ClusterTreeOutput.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RandomGenerator.o `test -f './tree/RandomGenerator.cpp' || echo './'`./tree/RandomGenerator.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o NJTree.o `test -f './tree/NJTree.cpp' || echo './'`./tree/NJTree.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentSteps.o `test -f './tree/AlignmentSteps.cpp' || echo './'`./tree/AlignmentSteps.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InteractiveMenu.o `test -f './interface/InteractiveMenu.cpp' || echo './'`./interface/InteractiveMenu.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/InteractiveMenu.h:15, from ./interface/InteractiveMenu.cpp:23: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': ./interface/InteractiveMenu.cpp:1190:29: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o CommandLineParser.o `test -f './interface/CommandLineParser.cpp' || echo './'`./interface/CommandLineParser.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/CommandLineParser.h:18, from ./interface/CommandLineParser.cpp:13: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SubMatrix.o `test -f './substitutionMatrix/SubMatrix.cpp' || echo './'`./substitutionMatrix/SubMatrix.cpp In file included from ./substitutionMatrix/SubMatrix.cpp:15:0: ./substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Iteration.o `test -f './multipleAlign/Iteration.cpp' || echo './'`./multipleAlign/Iteration.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/Iteration.h:8, from ./multipleAlign/Iteration.cpp:13: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./multipleAlign/Iteration.cpp:231:32: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSA.o `test -f './multipleAlign/MSA.cpp' || echo './'`./multipleAlign/MSA.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/MSA.h:10, from ./multipleAlign/MSA.cpp:16: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MyersMillerProfileAlign.o `test -f './multipleAlign/MyersMillerProfileAlign.cpp' || echo './'`./multipleAlign/MyersMillerProfileAlign.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileAlignAlgorithm.h:10, from ./multipleAlign/MyersMillerProfileAlign.h:10, from ./multipleAlign/MyersMillerProfileAlign.cpp:10: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileStandard.o `test -f './multipleAlign/ProfileStandard.cpp' || echo './'`./multipleAlign/ProfileStandard.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileStandard.h:9, from ./multipleAlign/ProfileStandard.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileWithSub.o `test -f './multipleAlign/ProfileWithSub.cpp' || echo './'`./multipleAlign/ProfileWithSub.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileWithSub.h:9, from ./multipleAlign/ProfileWithSub.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileBase.o `test -f './multipleAlign/ProfileBase.cpp' || echo './'`./multipleAlign/ProfileBase.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/ProfileBase.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o LowScoreSegProfile.o `test -f './multipleAlign/LowScoreSegProfile.cpp' || echo './'`./multipleAlign/LowScoreSegProfile.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/LowScoreSegProfile.h:13, from ./multipleAlign/LowScoreSegProfile.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o OutputFile.o `test -f './general/OutputFile.cpp' || echo './'`./general/OutputFile.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UserParameters.o `test -f './general/UserParameters.cpp' || echo './'`./general/UserParameters.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Utility.o `test -f './general/Utility.cpp' || echo './'`./general/Utility.cpp ./general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': ./general/Utility.cpp:183:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ ./general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': ./general/Utility.cpp:221:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InvalidCombination.o `test -f './general/InvalidCombination.cpp' || echo './'`./general/InvalidCombination.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o DebugLog.o `test -f './general/DebugLog.cpp' || echo './'`./general/DebugLog.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalWResources.o `test -f './general/ClustalWResources.cpp' || echo './'`./general/ClustalWResources.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o VectorOutOfRange.o `test -f './general/VectorOutOfRange.cpp' || echo './'`./general/VectorOutOfRange.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SymMatrix.o `test -f './general/SymMatrix.cpp' || echo './'`./general/SymMatrix.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Stats.o `test -f './general/Stats.cpp' || echo './'`./general/Stats.cpp In file included from ./general/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./general/../alignment/Alignment.h:42, from ./general/Stats.cpp:15: ./general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Help.o `test -f './Help.cpp' || echo './'`./Help.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Alignment.o `test -f './alignment/Alignment.cpp' || echo './'`./alignment/Alignment.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/Alignment.cpp:25: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentOutput.o `test -f './alignment/AlignmentOutput.cpp' || echo './'`./alignment/AlignmentOutput.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/AlignmentOutput.h:24, from ./alignment/AlignmentOutput.cpp:27: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ObjectiveScore.o `test -f './alignment/ObjectiveScore.cpp' || echo './'`./alignment/ObjectiveScore.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/ObjectiveScore.h:15, from ./alignment/ObjectiveScore.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Sequence.o `test -f './alignment/Sequence.cpp' || echo './'`./alignment/Sequence.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Clustal.o `test -f './Clustal.cpp' || echo './'`./Clustal.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./Clustal.h:18, from ./Clustal.cpp:27: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o main.o `test -f './main.cpp' || echo './'`./main.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./main.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o clustalw2 FullPairwiseAlign.o FastPairwiseAlign.o MSFFileParser.o FileReader.o PIRFileParser.o RSFFileParser.o GDEFileParser.o InFileStream.o ClustalFileParser.o PearsonFileParser.o FileParser.o EMBLFileParser.o RootedClusterTree.o UPGMAAlgorithm.o Node.o RootedGuideTree.o RootedTreeOutput.o Tree.o ClusterTree.o TreeInterface.o UnRootedClusterTree.o ClusterTreeOutput.o RandomGenerator.o NJTree.o AlignmentSteps.o InteractiveMenu.o CommandLineParser.o SubMatrix.o Iteration.o MSA.o MyersMillerProfileAlign.o ProfileStandard.o ProfileWithSub.o ProfileBase.o LowScoreSegProfile.o OutputFile.o UserParameters.o Utility.o InvalidCombination.o DebugLog.o ClustalWResources.o VectorOutOfRange.o SymMatrix.o Stats.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o Clustal.o main.o Iteration.o: In function `std::vector >::operator=(std::vector > const&)': /build/buildd/clustalw-2.1+lgpl/src/./multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_auto_test -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making check in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making check in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with autotools_dev dh_testroot -a dh_prep -a dh_auto_install -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making install in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal" make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making install in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin" /usr/bin/install -c clustalw2 '/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_install # We have to ask upstream if it is important for them that the binary is named clustalw2 mv /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw2 /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw # That is a bit ugly and should be better investigated. rmdir /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal/ make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installexamples -a dh_installman -a dh_installmenu -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: clustalw dh_strip debug symbol extraction: packages to act on: clustalw dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: warning: '/build/buildd/clustalw-2.1+lgpl/debian/clustalw-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw-dbgsym' in `../clustalw-dbgsym_2.1+lgpl-3ubuntu1_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing clustalw (in debian/clustalw); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/clustalw/DEBIAN/control, package clustalw, directory debian/clustalw .. removing usr/share/doc/clustalw/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalw/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package clustalw took 0 s dpkg-deb: warning: 'debian/clustalw/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw' in `../clustalw_2.1+lgpl-3ubuntu1_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../clustalw_2.1+lgpl-3ubuntu1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-2.1+lgpl dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131117-1247 Publishing debug debs. chroot-autobuild/build/buildd/clustalw_2.1+lgpl-3ubuntu1_amd64.deb: new debian package, version 2.0. size 269476 bytes: control archive= 1431 bytes. 1184 bytes, 23 lines control 878 bytes, 12 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: clustalw Version: 2.1+lgpl-3ubuntu1 Architecture: amd64 Maintainer: Ubuntu Developers Installed-Size: 823 Depends: libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Suggests: clustalx, seaview Enhances: bioperl-run, emboss, t-coffee Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: global multiple nucleotide or peptide sequence alignment This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted. . The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/clustalw_2.1+lgpl-3ubuntu1_amd64.deb: drwxr-xr-x root/root 0 2013-11-17 12:47 ./ drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/ drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/ drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/man/ drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/man/man1/ -rw-r--r-- root/root 4184 2013-11-17 12:47 ./usr/share/man/man1/clustalw.1.gz drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/clustalw/ -rw-r--r-- root/root 33752 2010-11-12 16:53 ./usr/share/clustalw/clustalw_help drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/menu/ -rw-r--r-- root/root 193 2013-11-14 08:26 ./usr/share/menu/clustalw drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/doc/clustalw/ -rw-r--r-- root/root 715 2010-09-09 14:26 ./usr/share/doc/clustalw/README -rw-r--r-- root/root 821 2013-11-14 08:26 ./usr/share/doc/clustalw/README.Debian -rw-r--r-- root/root 2091 2013-11-14 08:26 ./usr/share/doc/clustalw/copyright drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/share/doc/clustalw/examples/ drwxr-xr-x root/root 0 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/ -rw-r--r-- root/root 1007 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc.data -rw-r--r-- root/root 157 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/seq -rw-r--r-- root/root 552 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/Makefile -rw-r--r-- root/root 1013 2013-11-14 08:26 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc2.data -rw-r--r-- root/root 2027 2013-11-17 12:47 ./usr/share/doc/clustalw/changelog.Debian.gz drwxr-xr-x root/root 0 2013-11-17 12:47 ./usr/bin/ -rwxr-xr-x root/root 735704 2013-11-17 12:47 ./usr/bin/clustalw clustalw_2.1+lgpl-3ubuntu1_amd64.changes: Format: 1.8 Date: Sun, 17 Nov 2013 12:41:28 +0000 Source: clustalw Binary: clustalw Architecture: amd64 Version: 2.1+lgpl-3ubuntu1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Adam Conrad Description: clustalw - global multiple nucleotide or peptide sequence alignment Changes: clustalw (2.1+lgpl-3ubuntu1) trusty; urgency=low . * Use dh_autotools-dev to update config.{sub,guess} for new ports. Checksums-Sha1: b78839c4e8de284ef99cc59a884af4aa23d6aad3 269476 clustalw_2.1+lgpl-3ubuntu1_amd64.deb Checksums-Sha256: 75c038733f7cd9ab7260750cffcdfdeb45bbc7a87b917100fe67dcff2d33ed3f 269476 clustalw_2.1+lgpl-3ubuntu1_amd64.deb Files: 145eee457a13d961cfd6759823691163 269476 science optional clustalw_2.1+lgpl-3ubuntu1_amd64.deb Original-Maintainer: Debian Med Packaging Team ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131117-1247 Build needed 00:01:11, 44032k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5239197'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5239197/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5239197'] Unmounting chroot for build PACKAGEBUILD-5239197... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5239197'] Removing build PACKAGEBUILD-5239197