RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux sagari 3.2.0-56-powerpc64-smp #86-Ubuntu SMP Tue Oct 22 18:35:25 UTC 2013 ppc64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 16 Dec 07:45:37 ntpdate[32168]: adjust time server 10.211.37.1 offset -0.000024 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5342727', '/home/buildd/filecache-default/d972e7b601c09e9b2bcae806e3f1a721203389a0'] Unpacking chroot for build PACKAGEBUILD-5342727 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5342727'] Mounting chroot for build PACKAGEBUILD-5342727 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5342727', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-updates main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5342727 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5342727', 'powerpc'] Updating debian chroot for build PACKAGEBUILD-5342727 Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-security InRelease Get:1 http://archive-team.internal trusty Release [744 B] Ign http://ftpmaster.internal trusty-updates InRelease Ign http://ftpmaster.internal trusty-proposed InRelease Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [58.5 kB] Get:7 http://archive-team.internal trusty/main powerpc Packages Get:8 http://ftpmaster.internal trusty-security Release [58.5 kB] Get:9 http://ftpmaster.internal trusty-updates Release [58.5 kB] Ign http://archive-team.internal trusty/main Translation-en Get:10 http://ftpmaster.internal trusty-proposed Release [58.5 kB] Get:11 http://ftpmaster.internal trusty/main powerpc Packages [1229 kB] Get:12 http://ftpmaster.internal trusty/restricted powerpc Packages [14 B] Get:13 http://ftpmaster.internal trusty/universe powerpc Packages [5658 kB] Get:14 http://ftpmaster.internal trusty/multiverse powerpc Packages [115 kB] Get:15 http://ftpmaster.internal trusty/main Translation-en [729 kB] Get:16 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:17 http://ftpmaster.internal trusty/restricted Translation-en [3433 B] Get:18 http://ftpmaster.internal trusty/universe Translation-en [4000 kB] Get:19 http://ftpmaster.internal trusty-security/main powerpc Packages [14 B] Get:20 http://ftpmaster.internal trusty-security/restricted powerpc Packages [14 B] Get:21 http://ftpmaster.internal trusty-security/universe powerpc Packages [14 B] Get:22 http://ftpmaster.internal trusty-security/multiverse powerpc Packages [14 B] Get:23 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:24 http://ftpmaster.internal trusty-security/multiverse Translation-en [14 B] Get:25 http://ftpmaster.internal trusty-security/restricted Translation-en [14 B] Get:26 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:27 http://ftpmaster.internal trusty-updates/main powerpc Packages [14 B] Get:28 http://ftpmaster.internal trusty-updates/restricted powerpc Packages [14 B] Get:29 http://ftpmaster.internal trusty-updates/universe powerpc Packages [14 B] Get:30 http://ftpmaster.internal trusty-updates/multiverse powerpc Packages [14 B] Get:31 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:32 http://ftpmaster.internal trusty-updates/multiverse Translation-en [14 B] Get:33 http://ftpmaster.internal trusty-updates/restricted Translation-en [14 B] Get:34 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:35 http://ftpmaster.internal trusty-proposed/main powerpc Packages [34.8 kB] Get:36 http://ftpmaster.internal trusty-proposed/restricted powerpc Packages [14 B] Get:37 http://ftpmaster.internal trusty-proposed/universe powerpc Packages [260 kB] Get:38 http://ftpmaster.internal trusty-proposed/multiverse powerpc Packages [3176 B] Get:39 http://ftpmaster.internal trusty-proposed/main Translation-en [28.4 kB] Get:40 http://ftpmaster.internal trusty-proposed/multiverse Translation-en [4922 B] Get:41 http://ftpmaster.internal trusty-proposed/restricted Translation-en [14 B] Get:42 http://ftpmaster.internal trusty-proposed/universe Translation-en [156 kB] Fetched 12.6 MB in 4s (2937 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils build-essential cpp cpp-4.8 e2fslibs e2fsprogs fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gnupg gpgv hostname klibc-utils libapt-pkg4.12 libasan0 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libdb5.3 libfakeroot libgcc-4.8-dev libgcc1 libgcrypt11 libgomp1 libklibc liblockfile-bin liblockfile1 libplymouth2 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 linux-libc-dev multiarch-support perl perl-base perl-modules plymouth sed tar 48 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 37.5 MB of archives. After this operation, 1323 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc6-dev powerpc 2.18-0ubuntu1 [1764 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc-dev-bin powerpc 2.18-0ubuntu1 [62.2 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev powerpc 3.12.0-7.15 [718 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc6 powerpc 2.18-0ubuntu1 [4363 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libc-bin powerpc 2.18-0ubuntu1 [1256 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 powerpc 4.8.2-10ubuntu1 [23.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libasan0 powerpc 4.8.2-10ubuntu1 [62.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base powerpc 4.8.2-10ubuntu1 [14.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 powerpc 1:4.8.2-10ubuntu1 [34.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 powerpc 4.8.2-10ubuntu1 [7026 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 powerpc 4.8.2-10ubuntu1 [4127 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev powerpc 4.8.2-10ubuntu1 [1063 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 powerpc 4.8.2-10ubuntu1 [5924 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 powerpc 4.8.2-10ubuntu1 [4495 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev powerpc 4.8.2-10ubuntu1 [284 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 powerpc 4.8.2-10ubuntu1 [264 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main binutils powerpc 2.24-2ubuntu1 [2059 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs powerpc 1.42.8-1ubuntu3 [178 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs powerpc 1.42.8-1ubuntu3 [630 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main hostname powerpc 3.15ubuntu1 [11.0 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl powerpc 5.18.1-5 [2172 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-base powerpc 5.18.1-5 [1049 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-modules all 5.18.1-5 [2680 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libdb5.3 powerpc 5.3.28-3ubuntu1 [573 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main sed powerpc 4.2.2-2ubuntu2 [135 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main tar powerpc 1.27-4 [181 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 powerpc 0.9.14.1ubuntu1 [587 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main gpgv powerpc 1.4.15-1.1ubuntu2 [141 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main gnupg powerpc 1.4.15-1.1ubuntu2 [560 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main apt powerpc 0.9.14.1ubuntu1 [935 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 powerpc 1.42.8-1ubuntu3 [60.9 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libss2 powerpc 1.42.8-1ubuntu3 [65.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcrypt11 powerpc 1.5.3-2ubuntu2 [234 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile-bin powerpc 1.09-6ubuntu1 [10.4 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile1 powerpc 1.09-6ubuntu1 [7638 B] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 powerpc 3.8.1-1ubuntu3 [300 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main plymouth powerpc 0.8.8-0ubuntu12 [83.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libplymouth2 powerpc 0.8.8-0ubuntu12 [68.0 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty-proposed/main multiarch-support powerpc 2.18-0ubuntu1 [4486 B] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main klibc-utils powerpc 2.0.2-1ubuntu2 [104 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libklibc powerpc 2.0.2-1ubuntu2 [40.3 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https powerpc 0.9.14.1ubuntu1 [23.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main cpp powerpc 4:4.8.2-1ubuntu2 [27.6 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main gcc powerpc 4:4.8.2-1ubuntu2 [5000 B] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main g++ powerpc 4:4.8.2-1ubuntu2 [1498 B] Get:46 http://ftpmaster.internal/ubuntu/ trusty-proposed/main build-essential powerpc 11.6ubuntu6 [4810 B] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libfakeroot powerpc 1.20-3ubuntu1 [21.4 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main fakeroot powerpc 1.20-3ubuntu1 [53.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.5 MB in 1s (28.6 MB/s) (Reading database ... 11883 files and directories currently installed.) Preparing to replace libc6-dev:powerpc 2.17-93ubuntu4 (using .../libc6-dev_2.18-0ubuntu1_powerpc.deb) ... Unpacking replacement libc6-dev:powerpc ... Preparing to replace libc-dev-bin 2.17-93ubuntu4 (using .../libc-dev-bin_2.18-0ubuntu1_powerpc.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace linux-libc-dev:powerpc 3.12.0-5.13 (using .../linux-libc-dev_3.12.0-7.15_powerpc.deb) ... Unpacking replacement linux-libc-dev:powerpc ... Preparing to replace libc6:powerpc 2.17-93ubuntu4 (using .../libc6_2.18-0ubuntu1_powerpc.deb) ... Checking for services that may need to be restarted... Checking init scripts... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Unpacking replacement libc6:powerpc ... Preparing to replace libgcc1:powerpc 1:4.8.2-1ubuntu2 (using .../libgcc1_1%3a4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libgcc1:powerpc ... Preparing to replace gcc-4.8-base:powerpc 4.8.2-1ubuntu2 (using .../gcc-4.8-base_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8-base:powerpc ... Setting up gcc-4.8-base:powerpc (4.8.2-10ubuntu1) ... Setting up libc6:powerpc (2.18-0ubuntu1) ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Setting up libgcc1:powerpc (1:4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11885 files and directories currently installed.) Preparing to replace libc-bin 2.17-93ubuntu4 (using .../libc-bin_2.18-0ubuntu1_powerpc.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.18-0ubuntu1) ... (Reading database ... 11885 files and directories currently installed.) Preparing to replace libgomp1:powerpc 4.8.2-1ubuntu2 (using .../libgomp1_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libgomp1:powerpc ... Preparing to replace libasan0:powerpc 4.8.2-1ubuntu2 (using .../libasan0_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libasan0:powerpc ... Preparing to replace libatomic1:powerpc 4.8.2-1ubuntu2 (using .../libatomic1_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libatomic1:powerpc ... Preparing to replace cpp-4.8 4.8.2-1ubuntu2 (using .../cpp-4.8_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace libstdc++-4.8-dev:powerpc 4.8.2-1ubuntu2 (using .../libstdc++-4.8-dev_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++-4.8-dev:powerpc ... Preparing to replace g++-4.8 4.8.2-1ubuntu2 (using .../g++-4.8_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.2-1ubuntu2 (using .../gcc-4.8_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:powerpc 4.8.2-1ubuntu2 (using .../libgcc-4.8-dev_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libgcc-4.8-dev:powerpc ... Preparing to replace libstdc++6:powerpc 4.8.2-1ubuntu2 (using .../libstdc++6_4.8.2-10ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6:powerpc ... Setting up libstdc++6:powerpc (4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace binutils 2.24-1ubuntu2 (using .../binutils_2.24-2ubuntu1_powerpc.deb) ... Unpacking replacement binutils ... Preparing to replace e2fslibs:powerpc 1.42.8-1ubuntu1 (using .../e2fslibs_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement e2fslibs:powerpc ... Setting up e2fslibs:powerpc (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace e2fsprogs 1.42.8-1ubuntu1 (using .../e2fsprogs_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42.8-1ubuntu3) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace hostname 3.13ubuntu1 (using .../hostname_3.15ubuntu1_powerpc.deb) ... Unpacking replacement hostname ... Setting up hostname (3.15ubuntu1) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace perl 5.18.1-4build1 (using .../perl_5.18.1-5_powerpc.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.18.1-4build1 (using .../perl-base_5.18.1-5_powerpc.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-5) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace perl-modules 5.18.1-4build1 (using .../perl-modules_5.18.1-5_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libdb5.3:powerpc 5.3.28-3 (using .../libdb5.3_5.3.28-3ubuntu1_powerpc.deb) ... Unpacking replacement libdb5.3:powerpc ... Setting up libdb5.3:powerpc (5.3.28-3ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace sed 4.2.2-2ubuntu1 (using .../sed_4.2.2-2ubuntu2_powerpc.deb) ... Unpacking replacement sed ... Setting up sed (4.2.2-2ubuntu2) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace tar 1.27-3 (using .../tar_1.27-4_powerpc.deb) ... Unpacking replacement tar ... Setting up tar (1.27-4) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libapt-pkg4.12:powerpc 0.9.13.1~ubuntu1 (using .../libapt-pkg4.12_0.9.14.1ubuntu1_powerpc.deb) ... Unpacking replacement libapt-pkg4.12:powerpc ... Setting up libapt-pkg4.12:powerpc (0.9.14.1ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace gpgv 1.4.15-1.1ubuntu1 (using .../gpgv_1.4.15-1.1ubuntu2_powerpc.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.15-1.1ubuntu2) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace gnupg 1.4.15-1.1ubuntu1 (using .../gnupg_1.4.15-1.1ubuntu2_powerpc.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.15-1.1ubuntu2) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace apt 0.9.13.1~ubuntu1 (using .../apt_0.9.14.1ubuntu1_powerpc.deb) ... Unpacking replacement apt ... Setting up apt (0.9.14.1ubuntu1) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libcomerr2:powerpc 1.42.8-1ubuntu1 (using .../libcomerr2_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement libcomerr2:powerpc ... Setting up libcomerr2:powerpc (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libss2:powerpc 1.42.8-1ubuntu1 (using .../libss2_1.42.8-1ubuntu3_powerpc.deb) ... Unpacking replacement libss2:powerpc ... Setting up libss2:powerpc (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace libgcrypt11:powerpc 1.5.3-2ubuntu1 (using .../libgcrypt11_1.5.3-2ubuntu2_powerpc.deb) ... Unpacking replacement libgcrypt11:powerpc ... Preparing to replace liblockfile-bin 1.09-6 (using .../liblockfile-bin_1.09-6ubuntu1_powerpc.deb) ... Unpacking replacement liblockfile-bin ... Preparing to replace liblockfile1:powerpc 1.09-6 (using .../liblockfile1_1.09-6ubuntu1_powerpc.deb) ... Unpacking replacement liblockfile1:powerpc ... Preparing to replace libsqlite3-0:powerpc 3.8.1-1ubuntu1 (using .../libsqlite3-0_3.8.1-1ubuntu3_powerpc.deb) ... Unpacking replacement libsqlite3-0:powerpc ... Preparing to replace plymouth 0.8.8-0ubuntu11 (using .../plymouth_0.8.8-0ubuntu12_powerpc.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2:powerpc 0.8.8-0ubuntu11 (using .../libplymouth2_0.8.8-0ubuntu12_powerpc.deb) ... Unpacking replacement libplymouth2:powerpc ... Preparing to replace multiarch-support 2.17-93ubuntu4 (using .../multiarch-support_2.18-0ubuntu1_powerpc.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.18-0ubuntu1) ... (Reading database ... 11884 files and directories currently installed.) Preparing to replace klibc-utils 2.0.2-1ubuntu1 (using .../klibc-utils_2.0.2-1ubuntu2_powerpc.deb) ... Unpacking replacement klibc-utils ... Preparing to replace libklibc 2.0.2-1ubuntu1 (using .../libklibc_2.0.2-1ubuntu2_powerpc.deb) ... Unpacking replacement libklibc ... Preparing to replace apt-transport-https 0.9.13.1~ubuntu1 (using .../apt-transport-https_0.9.14.1ubuntu1_powerpc.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace cpp 4:4.8.1-2ubuntu3 (using .../cpp_4%3a4.8.2-1ubuntu2_powerpc.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.8.1-2ubuntu3 (using .../gcc_4%3a4.8.2-1ubuntu2_powerpc.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.8.1-2ubuntu3 (using .../g++_4%3a4.8.2-1ubuntu2_powerpc.deb) ... Unpacking replacement g++ ... Preparing to replace build-essential 11.6ubuntu5 (using .../build-essential_11.6ubuntu6_powerpc.deb) ... Unpacking replacement build-essential ... Preparing to replace libfakeroot:powerpc 1.20-3 (using .../libfakeroot_1.20-3ubuntu1_powerpc.deb) ... Unpacking replacement libfakeroot:powerpc ... Preparing to replace fakeroot 1.20-3 (using .../fakeroot_1.20-3ubuntu1_powerpc.deb) ... Unpacking replacement fakeroot ... Setting up libc-dev-bin (2.18-0ubuntu1) ... Setting up linux-libc-dev:powerpc (3.12.0-7.15) ... Setting up libc6-dev:powerpc (2.18-0ubuntu1) ... Setting up libgomp1:powerpc (4.8.2-10ubuntu1) ... Setting up libasan0:powerpc (4.8.2-10ubuntu1) ... Setting up libatomic1:powerpc (4.8.2-10ubuntu1) ... Setting up cpp-4.8 (4.8.2-10ubuntu1) ... Setting up libgcc-4.8-dev:powerpc (4.8.2-10ubuntu1) ... Setting up libstdc++-4.8-dev:powerpc (4.8.2-10ubuntu1) ... Setting up binutils (2.24-2ubuntu1) ... Setting up gcc-4.8 (4.8.2-10ubuntu1) ... Setting up g++-4.8 (4.8.2-10ubuntu1) ... Setting up libgcrypt11:powerpc (1.5.3-2ubuntu2) ... Setting up liblockfile-bin (1.09-6ubuntu1) ... Setting up liblockfile1:powerpc (1.09-6ubuntu1) ... Setting up libsqlite3-0:powerpc (3.8.1-1ubuntu3) ... Setting up libplymouth2:powerpc (0.8.8-0ubuntu12) ... Setting up plymouth (0.8.8-0ubuntu12) ... update-initramfs: deferring update (trigger activated) Setting up libklibc (2.0.2-1ubuntu2) ... Setting up klibc-utils (2.0.2-1ubuntu2) ... Setting up apt-transport-https (0.9.14.1ubuntu1) ... Setting up cpp (4:4.8.2-1ubuntu2) ... Setting up gcc (4:4.8.2-1ubuntu2) ... Setting up g++ (4:4.8.2-1ubuntu2) ... Setting up build-essential (11.6ubuntu6) ... Setting up libfakeroot:powerpc (1.20-3ubuntu1) ... Setting up fakeroot (1.20-3ubuntu1) ... Setting up perl-modules (5.18.1-5) ... Setting up perl (5.18.1-5) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5342727', 'powerpc', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=multiverse', 'clustalw_2.1+lgpl-4.dsc'] Initiating build PACKAGEBUILD-5342727 with 24 jobs across 24 processor cores. Kernel reported to sbuild: 3.2.0-56-powerpc64-smp #86-Ubuntu SMP Tue Oct 22 18:35:25 UTC 2013 ppc Automatic build of clustalw_2.1+lgpl-4 on sagari by sbuild/powerpc 1.170.5 Build started at 20131216-0746 ****************************************************************************** clustalw_2.1+lgpl-4.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), autotools-dev Checking for already installed source dependencies... debhelper: missing autotools-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autotools-dev bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 10.1 MB of archives. After this operation, 43.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 powerpc 2.1.0-4ubuntu1 [63.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 powerpc 1:5.14-2ubuntu1 [182 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 powerpc 1.0.1e-4ubuntu3 [688 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal powerpc 3.3.3-4 [394 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib powerpc 3.3.3-4 [2059 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal powerpc 3.3.3-4 [1334 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 powerpc 0.18.3.1-1ubuntu2 [6746 B] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 powerpc 2.39.1-0ubuntu3 [904 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 powerpc 1.2.5-1 [21.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 powerpc 2.9.1+dfsg1-3ubuntu3 [474 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main groff-base powerpc 1.22.2-3 [705 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils powerpc 9.0.5ubuntu1 [202 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main man-db powerpc 2.6.5-2 [686 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 powerpc 0.6.8-2ubuntu1 [70.1 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 powerpc 0.9.3-5ubuntu2 [249 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 powerpc 3.3.3-4 [129 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal powerpc 3.3.2-17 [26.3 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib powerpc 3.3.2-17 [7866 B] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main python3 powerpc 3.3.2-17 [9180 B] Get:21 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu3 [50.3 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main file powerpc 1:5.14-2ubuntu1 [18.7 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base powerpc 0.18.3.1-1ubuntu2 [45.4 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main gettext powerpc 0.18.3.1-1ubuntu2 [781 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu35 [20.1 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu35 [7300 B] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131127ubuntu1 [604 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.1 MB in 0s (22.8 MB/s) Selecting previously unselected package libexpat1:powerpc. (Reading database ... 11884 files and directories currently installed.) Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-4ubuntu1_powerpc.deb) ... Selecting previously unselected package libmagic1:powerpc. Unpacking libmagic1:powerpc (from .../libmagic1_1%3a5.14-2ubuntu1_powerpc.deb) ... Selecting previously unselected package libssl1.0.0:powerpc. Unpacking libssl1.0.0:powerpc (from .../libssl1.0.0_1.0.1e-4ubuntu3_powerpc.deb) ... Selecting previously unselected package libpython3.3-minimal:powerpc. Unpacking libpython3.3-minimal:powerpc (from .../libpython3.3-minimal_3.3.3-4_powerpc.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:powerpc. Unpacking libpython3.3-stdlib:powerpc (from .../libpython3.3-stdlib_3.3.3-4_powerpc.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.3-4_powerpc.deb) ... Selecting previously unselected package libasprintf0c2:powerpc. Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.3.1-1ubuntu2_powerpc.deb) ... Selecting previously unselected package libglib2.0-0:powerpc. Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.39.1-0ubuntu3_powerpc.deb) ... Selecting previously unselected package libpipeline1:powerpc. Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.5-1_powerpc.deb) ... Selecting previously unselected package libxml2:powerpc. Unpacking libxml2:powerpc (from .../libxml2_2.9.1+dfsg1-3ubuntu3_powerpc.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_powerpc.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_powerpc.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_powerpc.deb) ... Selecting previously unselected package libcroco3:powerpc. Unpacking libcroco3:powerpc (from .../libcroco3_0.6.8-2ubuntu1_powerpc.deb) ... Selecting previously unselected package libunistring0:powerpc. Unpacking libunistring0:powerpc (from .../libunistring0_0.9.3-5ubuntu2_powerpc.deb) ... Selecting previously unselected package python3.3. Unpacking python3.3 (from .../python3.3_3.3.3-4_powerpc.deb) ... Selecting previously unselected package python3-minimal. Unpacking python3-minimal (from .../python3-minimal_3.3.2-17_powerpc.deb) ... Selecting previously unselected package libpython3-stdlib:powerpc. Unpacking libpython3-stdlib:powerpc (from .../libpython3-stdlib_3.3.2-17_powerpc.deb) ... Selecting previously unselected package python3. Unpacking python3 (from .../python3_3.3.2-17_powerpc.deb) ... Selecting previously unselected package dh-python. Unpacking dh-python (from .../dh-python_1.20131021-1ubuntu3_all.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_1%3a5.14-2ubuntu1_powerpc.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.3.1-1ubuntu2_powerpc.deb) ... Selecting previously unselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20130810.1_all.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.3.1-1ubuntu2_powerpc.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2ubuntu1_all.deb) ... Selecting previously unselected package apparmor-easyprof. Unpacking apparmor-easyprof (from .../apparmor-easyprof_2.8.0-0ubuntu35_all.deb) ... Selecting previously unselected package dh-apparmor. Unpacking dh-apparmor (from .../dh-apparmor_2.8.0-0ubuntu35_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_9.20131127ubuntu1_all.deb) ... Setting up libexpat1:powerpc (2.1.0-4ubuntu1) ... Setting up libmagic1:powerpc (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:powerpc (1.0.1e-4ubuntu3) ... Setting up libpython3.3-minimal:powerpc (3.3.3-4) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:powerpc (3.3.3-4) ... Setting up python3.3-minimal (3.3.3-4) ... Setting up libasprintf0c2:powerpc (0.18.3.1-1ubuntu2) ... Setting up libglib2.0-0:powerpc (2.39.1-0ubuntu3) ... No schema files found: doing nothing. Setting up libpipeline1:powerpc (1.2.5-1) ... Setting up libxml2:powerpc (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:powerpc (0.6.8-2ubuntu1) ... Setting up libunistring0:powerpc (0.9.3-5ubuntu2) ... Setting up python3.3 (3.3.3-4) ... Setting up python3-minimal (3.3.2-17) ... Setting up libpython3-stdlib:powerpc (3.3.2-17) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up autotools-dev (20130810.1) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20131021-1ubuntu3) ... Setting up python3 (3.3.2-17) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu35) ... Setting up dh-apparmor (2.8.0-0ubuntu35) ... Setting up debhelper (9.20131127ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu1 make_3.81-8.2ubuntu3 dpkg-dev_1.17.1ubuntu1 gcc-4.8_4.8.2-10ubuntu1 g++-4.8_4.8.2-10ubuntu1 binutils_2.24-2ubuntu1 libstdc++-4.8-dev_4.8.2-10ubuntu1 libstdc++6_4.8.2-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Fri Dec 13 08:23:13 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw_2.1+lgpl-4.dsc dpkg-source: info: extracting clustalw in clustalw-2.1+lgpl dpkg-source: info: unpacking clustalw_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalw_2.1+lgpl-4.debian.tar.gz dpkg-buildpackage: source package clustalw dpkg-buildpackage: source version 2.1+lgpl-4 dpkg-buildpackage: source distribution unstable dpkg-source --before-build clustalw-2.1+lgpl dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir dh_auto_clean dh_autotools-dev_restoreconfig dh_clean debian/rules build-arch dh build-arch --with autotools_dev dh_testdir -a dh_autotools-dev_updateconfig -a dh_auto_configure -a configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... powerpc-unknown-linux-gnu checking host system type... powerpc-unknown-linux-gnu checking target system type... powerpc-unknown-linux-gnu building for linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make sets $(MAKE)... (cached) yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... no checking for an ANSI C-conforming const... yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes configure: creating ./config.status config.status: creating Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/clustalw_version.h config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making all in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making all in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make all-recursive make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo './'`./pairwise/FullPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FullPairwiseAlign.h:9, from ./pairwise/FullPairwiseAlign.cpp:9: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo './'`./pairwise/FastPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FastPairwiseAlign.h:9, from ./pairwise/FastPairwiseAlign.cpp:10: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSFFileParser.o `test -f './fileInput/MSFFileParser.cpp' || echo './'`./fileInput/MSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileReader.o `test -f './fileInput/FileReader.cpp' || echo './'`./fileInput/FileReader.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./fileInput/FileReader.cpp:29: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PIRFileParser.o `test -f './fileInput/PIRFileParser.cpp' || echo './'`./fileInput/PIRFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RSFFileParser.o `test -f './fileInput/RSFFileParser.cpp' || echo './'`./fileInput/RSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o GDEFileParser.o `test -f './fileInput/GDEFileParser.cpp' || echo './'`./fileInput/GDEFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InFileStream.o `test -f './fileInput/InFileStream.cpp' || echo './'`./fileInput/InFileStream.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalFileParser.o `test -f './fileInput/ClustalFileParser.cpp' || echo './'`./fileInput/ClustalFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PearsonFileParser.o `test -f './fileInput/PearsonFileParser.cpp' || echo './'`./fileInput/PearsonFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileParser.o `test -f './fileInput/FileParser.cpp' || echo './'`./fileInput/FileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o EMBLFileParser.o `test -f './fileInput/EMBLFileParser.cpp' || echo './'`./fileInput/EMBLFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedClusterTree.o `test -f './tree/UPGMA/RootedClusterTree.cpp' || echo './'`./tree/UPGMA/RootedClusterTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/../ClusterTree.h:20, from ./tree/UPGMA/RootedClusterTree.h:8, from ./tree/UPGMA/RootedClusterTree.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UPGMAAlgorithm.o `test -f './tree/UPGMA/UPGMAAlgorithm.cpp' || echo './'`./tree/UPGMA/UPGMAAlgorithm.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/UPGMAAlgorithm.h:8, from ./tree/UPGMA/UPGMAAlgorithm.cpp:4: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Node.o `test -f './tree/UPGMA/Node.cpp' || echo './'`./tree/UPGMA/Node.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedGuideTree.o `test -f './tree/UPGMA/RootedGuideTree.cpp' || echo './'`./tree/UPGMA/RootedGuideTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedGuideTree.cpp:10: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedTreeOutput.o `test -f './tree/UPGMA/RootedTreeOutput.cpp' || echo './'`./tree/UPGMA/RootedTreeOutput.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedTreeOutput.h:15, from ./tree/UPGMA/RootedTreeOutput.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Tree.o `test -f './tree/Tree.cpp' || echo './'`./tree/Tree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/Tree.h:13, from ./tree/Tree.cpp:10: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTree.o `test -f './tree/ClusterTree.cpp' || echo './'`./tree/ClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/ClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o TreeInterface.o `test -f './tree/TreeInterface.cpp' || echo './'`./tree/TreeInterface.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/TreeInterface.h:19, from ./tree/TreeInterface.cpp:15: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UnRootedClusterTree.o `test -f './tree/UnRootedClusterTree.cpp' || echo './'`./tree/UnRootedClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/UnRootedClusterTree.h:8, from ./tree/UnRootedClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTreeOutput.o `test -f './tree/ClusterTreeOutput.cpp' || echo './'`./tree/ClusterTreeOutput.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTreeOutput.h:11, from ./tree/ClusterTreeOutput.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RandomGenerator.o `test -f './tree/RandomGenerator.cpp' || echo './'`./tree/RandomGenerator.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o NJTree.o `test -f './tree/NJTree.cpp' || echo './'`./tree/NJTree.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentSteps.o `test -f './tree/AlignmentSteps.cpp' || echo './'`./tree/AlignmentSteps.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InteractiveMenu.o `test -f './interface/InteractiveMenu.cpp' || echo './'`./interface/InteractiveMenu.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/InteractiveMenu.h:15, from ./interface/InteractiveMenu.cpp:23: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': ./interface/InteractiveMenu.cpp:1190:29: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o CommandLineParser.o `test -f './interface/CommandLineParser.cpp' || echo './'`./interface/CommandLineParser.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/CommandLineParser.h:18, from ./interface/CommandLineParser.cpp:13: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SubMatrix.o `test -f './substitutionMatrix/SubMatrix.cpp' || echo './'`./substitutionMatrix/SubMatrix.cpp In file included from ./substitutionMatrix/SubMatrix.cpp:15:0: ./substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Iteration.o `test -f './multipleAlign/Iteration.cpp' || echo './'`./multipleAlign/Iteration.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/Iteration.h:8, from ./multipleAlign/Iteration.cpp:13: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./multipleAlign/Iteration.cpp:231:32: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSA.o `test -f './multipleAlign/MSA.cpp' || echo './'`./multipleAlign/MSA.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/MSA.h:10, from ./multipleAlign/MSA.cpp:16: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MyersMillerProfileAlign.o `test -f './multipleAlign/MyersMillerProfileAlign.cpp' || echo './'`./multipleAlign/MyersMillerProfileAlign.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileAlignAlgorithm.h:10, from ./multipleAlign/MyersMillerProfileAlign.h:10, from ./multipleAlign/MyersMillerProfileAlign.cpp:10: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileStandard.o `test -f './multipleAlign/ProfileStandard.cpp' || echo './'`./multipleAlign/ProfileStandard.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileStandard.h:9, from ./multipleAlign/ProfileStandard.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileWithSub.o `test -f './multipleAlign/ProfileWithSub.cpp' || echo './'`./multipleAlign/ProfileWithSub.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileWithSub.h:9, from ./multipleAlign/ProfileWithSub.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileBase.o `test -f './multipleAlign/ProfileBase.cpp' || echo './'`./multipleAlign/ProfileBase.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/ProfileBase.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o LowScoreSegProfile.o `test -f './multipleAlign/LowScoreSegProfile.cpp' || echo './'`./multipleAlign/LowScoreSegProfile.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/LowScoreSegProfile.h:13, from ./multipleAlign/LowScoreSegProfile.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o OutputFile.o `test -f './general/OutputFile.cpp' || echo './'`./general/OutputFile.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UserParameters.o `test -f './general/UserParameters.cpp' || echo './'`./general/UserParameters.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Utility.o `test -f './general/Utility.cpp' || echo './'`./general/Utility.cpp ./general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': ./general/Utility.cpp:183:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ ./general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': ./general/Utility.cpp:221:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InvalidCombination.o `test -f './general/InvalidCombination.cpp' || echo './'`./general/InvalidCombination.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o DebugLog.o `test -f './general/DebugLog.cpp' || echo './'`./general/DebugLog.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalWResources.o `test -f './general/ClustalWResources.cpp' || echo './'`./general/ClustalWResources.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o VectorOutOfRange.o `test -f './general/VectorOutOfRange.cpp' || echo './'`./general/VectorOutOfRange.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SymMatrix.o `test -f './general/SymMatrix.cpp' || echo './'`./general/SymMatrix.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Stats.o `test -f './general/Stats.cpp' || echo './'`./general/Stats.cpp In file included from ./general/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./general/../alignment/Alignment.h:42, from ./general/Stats.cpp:15: ./general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Help.o `test -f './Help.cpp' || echo './'`./Help.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Alignment.o `test -f './alignment/Alignment.cpp' || echo './'`./alignment/Alignment.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/Alignment.cpp:25: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentOutput.o `test -f './alignment/AlignmentOutput.cpp' || echo './'`./alignment/AlignmentOutput.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/AlignmentOutput.h:24, from ./alignment/AlignmentOutput.cpp:27: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ObjectiveScore.o `test -f './alignment/ObjectiveScore.cpp' || echo './'`./alignment/ObjectiveScore.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/ObjectiveScore.h:15, from ./alignment/ObjectiveScore.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Sequence.o `test -f './alignment/Sequence.cpp' || echo './'`./alignment/Sequence.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Clustal.o `test -f './Clustal.cpp' || echo './'`./Clustal.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./Clustal.h:18, from ./Clustal.cpp:27: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o main.o `test -f './main.cpp' || echo './'`./main.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./main.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o clustalw2 FullPairwiseAlign.o FastPairwiseAlign.o MSFFileParser.o FileReader.o PIRFileParser.o RSFFileParser.o GDEFileParser.o InFileStream.o ClustalFileParser.o PearsonFileParser.o FileParser.o EMBLFileParser.o RootedClusterTree.o UPGMAAlgorithm.o Node.o RootedGuideTree.o RootedTreeOutput.o Tree.o ClusterTree.o TreeInterface.o UnRootedClusterTree.o ClusterTreeOutput.o RandomGenerator.o NJTree.o AlignmentSteps.o InteractiveMenu.o CommandLineParser.o SubMatrix.o Iteration.o MSA.o MyersMillerProfileAlign.o ProfileStandard.o ProfileWithSub.o ProfileBase.o LowScoreSegProfile.o OutputFile.o UserParameters.o Utility.o InvalidCombination.o DebugLog.o ClustalWResources.o VectorOutOfRange.o SymMatrix.o Stats.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o Clustal.o main.o Iteration.o: In function `__gnu_cxx::new_allocator::allocate(unsigned int, void const*)': /build/buildd/clustalw-2.1+lgpl/src/./multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_auto_test -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making check in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making check in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with autotools_dev dh_testroot -a dh_prep -a dh_auto_install -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making install in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal" make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making install in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin" /usr/bin/install -c clustalw2 '/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_install # We have to ask upstream if it is important for them that the binary is named clustalw2 mv /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw2 /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw # That is a bit ugly and should be better investigated. rmdir /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal/ make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installexamples -a dh_installman -a dh_installmenu -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: clustalw dh_strip debug symbol extraction: packages to act on: clustalw dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `clustalw-dbgsym' in `../clustalw-dbgsym_2.1+lgpl-4_powerpc.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing clustalw (in debian/clustalw); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw/DEBIAN/control, package clustalw, directory debian/clustalw .. removing usr/share/doc/clustalw/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalw/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package clustalw took 0 s dpkg-deb: warning: 'debian/clustalw/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw' in `../clustalw_2.1+lgpl-4_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../clustalw_2.1+lgpl-4_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-2.1+lgpl dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131216-0747 Publishing debug debs. chroot-autobuild/build/buildd/clustalw_2.1+lgpl-4_powerpc.deb: new debian package, version 2.0. size 252738 bytes: control archive= 1433 bytes. 1178 bytes, 23 lines control 878 bytes, 12 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: clustalw Version: 2.1+lgpl-4 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 849 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Suggests: clustalx, seaview Enhances: bioperl-run, emboss, t-coffee Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: global multiple nucleotide or peptide sequence alignment This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted. . The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM. chroot-autobuild/build/buildd/clustalw_2.1+lgpl-4_powerpc.deb: drwxr-xr-x root/root 0 2013-12-16 07:47 ./ drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/ drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/ drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/menu/ -rw-r--r-- root/root 193 2013-12-13 08:21 ./usr/share/menu/clustalw drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/doc/clustalw/ -rw-r--r-- root/root 715 2010-09-09 14:26 ./usr/share/doc/clustalw/README -rw-r--r-- root/root 2091 2013-12-13 08:21 ./usr/share/doc/clustalw/copyright -rw-r--r-- root/root 2045 2013-12-16 07:47 ./usr/share/doc/clustalw/changelog.Debian.gz -rw-r--r-- root/root 821 2013-12-13 08:21 ./usr/share/doc/clustalw/README.Debian drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/doc/clustalw/examples/ drwxr-xr-x root/root 0 2013-12-13 08:21 ./usr/share/doc/clustalw/examples/tests.clustalw/ -rw-r--r-- root/root 157 2013-12-13 08:21 ./usr/share/doc/clustalw/examples/tests.clustalw/seq -rw-r--r-- root/root 1007 2013-12-13 08:21 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc.data -rw-r--r-- root/root 552 2013-12-13 08:21 ./usr/share/doc/clustalw/examples/tests.clustalw/Makefile -rw-r--r-- root/root 1013 2013-12-13 08:21 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc2.data drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/clustalw/ -rw-r--r-- root/root 33752 2010-11-12 16:53 ./usr/share/clustalw/clustalw_help drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/man/ drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/share/man/man1/ -rw-r--r-- root/root 4184 2013-12-16 07:47 ./usr/share/man/man1/clustalw.1.gz drwxr-xr-x root/root 0 2013-12-16 07:47 ./usr/bin/ -rwxr-xr-x root/root 762760 2013-12-16 07:47 ./usr/bin/clustalw clustalw_2.1+lgpl-4_powerpc.changes: Format: 1.8 Date: Fri, 13 Dec 2013 09:18:40 +0100 Source: clustalw Binary: clustalw Architecture: powerpc Version: 2.1+lgpl-4 Distribution: trusty-proposed Urgency: medium Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Andreas Tille Description: clustalw - global multiple nucleotide or peptide sequence alignment Closes: 729789 Changes: clustalw (2.1+lgpl-4) unstable; urgency=medium . * use dh_autotools-dev to update config.{sub,guess} (Thanks for the patch to Adam Conrad ) Closes: #729789 * Standards-Version: 3.9.5 (no changes needed) Checksums-Sha1: 72f6feceb6fcbea773dac3c415cf91983fb6b7ca 252738 clustalw_2.1+lgpl-4_powerpc.deb Checksums-Sha256: 946631be244fef780834737ba17db9e9a2baecf3bdca014ed9cf5787629efe9d 252738 clustalw_2.1+lgpl-4_powerpc.deb Files: dbbf9c4f00d1aca69630812126e9562c 252738 science optional clustalw_2.1+lgpl-4_powerpc.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131216-0747 Build needed 00:01:16, 31880k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5342727'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5342727/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5342727'] Unmounting chroot for build PACKAGEBUILD-5342727... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5342727'] Removing build PACKAGEBUILD-5342727