RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux fisher04 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 dpkg-dev_1.17.5ubuntu4. Syncing the system clock with the buildd NTP service... 20 Feb 06:01:26 ntpdate[821]: adjust time server 10.211.37.1 offset 0.000021 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5597234', '/home/buildd/filecache-default/1418c9e5f0eb143d9f77e4665c5b7c89c42011cc'] Unpacking chroot for build PACKAGEBUILD-5597234 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5597234'] Mounting chroot for build PACKAGEBUILD-5597234 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5597234', 'deb http://ftpmaster.internal/ubuntu trusty main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-5597234 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5597234', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-5597234 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty Release.gpg Hit http://archive-team.internal trusty Release Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Ign http://archive-team.internal trusty/main ppc64el Packages/DiffIndex Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty Release [58.5 kB] Get:4 http://ftpmaster.internal trusty Release [58.5 kB] Get:5 http://ftpmaster.internal trusty/main ppc64el Packages [1223 kB] Ign http://archive-team.internal trusty/main Translation-en Hit http://archive-team.internal trusty/main ppc64el Packages Get:6 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:7 http://ftpmaster.internal trusty/universe ppc64el Packages [4976 kB] Get:8 http://ftpmaster.internal trusty/multiverse ppc64el Packages [72.1 kB] Get:9 http://ftpmaster.internal trusty/main Translation-en [762 kB] Get:10 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:11 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:12 http://ftpmaster.internal trusty/universe Translation-en [4059 kB] Get:13 http://ftpmaster.internal trusty/main ppc64el Packages [1226 kB] Get:14 http://ftpmaster.internal trusty/restricted ppc64el Packages [14 B] Get:15 http://ftpmaster.internal trusty/universe ppc64el Packages [5005 kB] Get:16 http://ftpmaster.internal trusty/multiverse ppc64el Packages [107 kB] Get:17 http://ftpmaster.internal trusty/main Translation-en [760 kB] Get:18 http://ftpmaster.internal trusty/multiverse Translation-en [102 kB] Get:19 http://ftpmaster.internal trusty/restricted Translation-en [3457 B] Get:20 http://ftpmaster.internal trusty/universe Translation-en [4056 kB] Fetched 22.6 MB in 21s (1029 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files cpp-4.8 dash e2fslibs e2fsprogs g++-4.8 gcc-4.8 gcc-4.8-base gcc-4.9-base libasn1-8-heimdal libatomic1 libcomerr2 libgcc-4.8-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libroken18-heimdal libss2 libstdc++-4.8-dev libstdc++6 libwind0-heimdal linux-libc-dev upstart 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After this operation, 135 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files ppc64el 7.2ubuntu3 [44.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main dash ppc64el 0.5.7-4ubuntu1 [94.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs ppc64el 1.42.9-3ubuntu1 [185 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs ppc64el 1.42.9-3ubuntu1 [662 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 ppc64el 4.8.2-16ubuntu1 [28.8 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 ppc64el 4.8.2-16ubuntu1 [21.9 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 ppc64el 4.8.2-16ubuntu1 [6242 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 ppc64el 4.8.2-16ubuntu1 [4809 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 ppc64el 4.8.2-16ubuntu1 [4425 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 ppc64el 4.8.2-16ubuntu1 [7868 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.9-base ppc64el 4.9-20140217-0ubuntu1 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 ppc64el 1:4.9-20140217-0ubuntu1 [29.1 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev ppc64el 4.8.2-16ubuntu1 [1087 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev ppc64el 4.8.2-16ubuntu1 [245 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base ppc64el 4.8.2-16ubuntu1 [14.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 ppc64el 4.8.2-16ubuntu1 [270 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 ppc64el 1.42.9-3ubuntu1 [62.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libss2 ppc64el 1.42.9-3ubuntu1 [66.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libroken18-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libasn1-8-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [132 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libhcrypto4-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [90.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libheimbase1-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [28.4 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main libwind0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [47.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libhx509-5-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [97.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-26-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [188 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libheimntlm0-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [15.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi3-heimdal ppc64el 1.6~git20131207+dfsg-1ubuntu1 [83.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main upstart ppc64el 1.11-0ubuntu4 [338 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev ppc64el 3.13.0-11.31 [753 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.1 MB in 21s (925 kB/s) (Reading database ... 11450 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu3_ppc64el.deb ... Moving obsolete conffile /etc/update-motd.d/99-footer out of the way... Unpacking base-files (7.2ubuntu3) over (7.2ubuntu1) ... Setting up base-files (7.2ubuntu3) ... Removing obsolete conffile /etc/update-motd.d/99-footer ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../dash_0.5.7-4ubuntu1_ppc64el.deb ... Unpacking dash (0.5.7-4ubuntu1) over (0.5.7-3ubuntu1) ... Setting up dash (0.5.7-4ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fslibs:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fslibs:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking e2fsprogs (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up e2fsprogs (1.42.9-3ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libitm1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgomp1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../g++-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking g++-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../cpp-4.8_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking cpp-4.8 (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libatomic1_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.9-base_4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) over (4.9-20140213-0ubuntu2) ... Setting up gcc-4.9-base:ppc64el (4.9-20140217-0ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a4.9-20140217-0ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) over (1:4.9-20140213-0ubuntu2) ... Setting up libgcc1:ppc64el (1:4.9-20140217-0ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../libgcc-4.8-dev_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Preparing to unpack .../gcc-4.8-base_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up gcc-4.8-base:ppc64el (4.8.2-16ubuntu1) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.8.2-16ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (4.8.2-16ubuntu1) over (4.8.2-15ubuntu3) ... Setting up libstdc++6:ppc64el (4.8.2-16ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libcomerr2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libcomerr2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libss2_1.42.9-3ubuntu1_ppc64el.deb ... Unpacking libss2:ppc64el (1.42.9-3ubuntu1) over (1.42.9-2ubuntu1) ... Setting up libss2:ppc64el (1.42.9-3ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libroken18-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libasn1-8-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhcrypto4-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimbase1-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libwind0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libhx509-5-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libkrb5-26-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libheimntlm0-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../libgssapi3-heimdal_1.6~git20131207+dfsg-1ubuntu1_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) over (1.6~git20120403+dfsg1-3ubuntu0.2) ... Preparing to unpack .../upstart_1.11-0ubuntu4_ppc64el.deb ... Unpacking upstart (1.11-0ubuntu4) over (1.11-0ubuntu3) ... Preparing to unpack .../linux-libc-dev_3.13.0-11.31_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (3.13.0-11.31) over (3.13.0-8.28) ... Setting up libitm1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgomp1:ppc64el (4.8.2-16ubuntu1) ... Setting up cpp-4.8 (4.8.2-16ubuntu1) ... Setting up gcc-4.8 (4.8.2-16ubuntu1) ... Setting up libatomic1:ppc64el (4.8.2-16ubuntu1) ... Setting up libgcc-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up libstdc++-4.8-dev:ppc64el (4.8.2-16ubuntu1) ... Setting up g++-4.8 (4.8.2-16ubuntu1) ... Setting up libroken18-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libasn1-8-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimbase1-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libwind0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libkrb5-26-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up libgssapi3-heimdal:ppc64el (1.6~git20131207+dfsg-1ubuntu1) ... Setting up upstart (1.11-0ubuntu4) ... Setting up linux-libc-dev:ppc64el (3.13.0-11.31) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5597234', 'ppc64el', 'trusty', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty', '--purpose=PRIMARY', '--architecture=ppc64el', '--comp=multiverse', 'clustalw_2.1+lgpl-4.dsc'] Initiating build PACKAGEBUILD-5597234 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.13.0-8-generic #28-Ubuntu SMP Tue Feb 11 17:58:07 UTC 2014 ppc64le Automatic build of clustalw_2.1+lgpl-4 on fisher04 by sbuild/ppc64el 1.170.5 Build started at 20140220-0602 ****************************************************************************** clustalw_2.1+lgpl-4.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), autotools-dev Checking for already installed source dependencies... debhelper: missing autotools-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper autotools-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.4 python3.4-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl python3-doc python3-tk python3.4-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autotools-dev bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.4-minimal libpython3.4-stdlib libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python3 python3-minimal python3.4 python3.4-minimal 0 upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.0 MB of archives. After this operation, 48.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 ppc64el 2.1.0-4ubuntu1 [79.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 ppc64el 1:5.14-2ubuntu1 [194 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 ppc64el 1.0.1f-1ubuntu1 [762 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 ppc64el 0.18.3.1-1ubuntu2 [6748 B] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 ppc64el 2.39.90-0ubuntu1 [985 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 ppc64el 1.2.6-2 [22.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 ppc64el 2.9.1+dfsg1-3ubuntu3 [601 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main groff-base ppc64el 1.22.2-5 [1249 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils ppc64el 9.0.5ubuntu1 [173 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main man-db ppc64el 2.6.6-1 [847 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 ppc64el 0.6.8-2ubuntu1 [75.4 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 ppc64el 2.4.0-6 [83.9 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-minimal ppc64el 3.4~rc1-1build1 [440 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.4-stdlib ppc64el 3.4~rc1-1build1 [1972 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 ppc64el 0.9.3-5ubuntu3 [262 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main python3.4-minimal ppc64el 3.4~rc1-1build1 [1147 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main python3.4 ppc64el 3.4~rc1-1build1 [159 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal ppc64el 3.4~rc1-1 [23.4 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib ppc64el 3.4~rc1-1 [6976 B] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main python3 ppc64el 3.4~rc1-1 [8654 B] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20140128-1ubuntu2 [51.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main file ppc64el 1:5.14-2ubuntu1 [19.2 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base ppc64el 0.18.3.1-1ubuntu2 [47.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main gettext ppc64el 0.18.3.1-1ubuntu2 [840 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu38 [20.1 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu38 [7286 B] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131227ubuntu1 [604 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.0 MB in 16s (681 kB/s) Selecting previously unselected package libexpat1:ppc64el. (Reading database ... 11449 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.14-2ubuntu1) ... Selecting previously unselected package libssl1.0.0:ppc64el. Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu1_ppc64el.deb ... Unpacking libssl1.0.0:ppc64el (1.0.1f-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:ppc64el. Preparing to unpack .../libasprintf0c2_0.18.3.1-1ubuntu2_ppc64el.deb ... Unpacking libasprintf0c2:ppc64el (0.18.3.1-1ubuntu2) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../libglib2.0-0_2.39.90-0ubuntu1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.39.90-0ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. 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Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:ppc64el (0.6.8-2ubuntu1) ... Setting up libmpdec2:ppc64el (2.4.0-6) ... Setting up libpython3.4-minimal:ppc64el (3.4~rc1-1build1) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.4-stdlib:ppc64el (3.4~rc1-1build1) ... Setting up libunistring0:ppc64el (0.9.3-5ubuntu3) ... Setting up python3.4-minimal (3.4~rc1-1build1) ... Setting up python3.4 (3.4~rc1-1build1) ... Setting up python3-minimal (3.4~rc1-1) ... Setting up libpython3-stdlib:ppc64el (3.4~rc1-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up autotools-dev (20130810.1) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-python (1.20140128-1ubuntu2) ... Setting up python3 (3.4~rc1-1) ... running python rtupdate hooks for python3.4... running python post-rtupdate hooks for python3.4... Setting up apparmor-easyprof (2.8.0-0ubuntu38) ... Setting up dh-apparmor (2.8.0-0ubuntu38) ... Setting up debhelper (9.20131227ubuntu1) ... Processing triggers for libc-bin (2.18-0ubuntu7) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu7 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu4 gcc-4.8_4.8.2-16ubuntu1 g++-4.8_4.8.2-16ubuntu1 binutils_2.24-2ubuntu3.1 libstdc++-4.8-dev_4.8.2-16ubuntu1 libstdc++6_4.8.2-16ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Fri Dec 13 08:23:13 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalw_2.1+lgpl-4.dsc dpkg-source: info: extracting clustalw in clustalw-2.1+lgpl dpkg-source: info: unpacking clustalw_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalw_2.1+lgpl-4.debian.tar.gz dpkg-buildpackage: source package clustalw dpkg-buildpackage: source version 2.1+lgpl-4 dpkg-buildpackage: source distribution unstable dpkg-source --before-build clustalw-2.1+lgpl dpkg-buildpackage: host architecture ppc64el /usr/bin/fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir dh_auto_clean dh_autotools-dev_restoreconfig dh_clean debian/rules build-arch dh build-arch --with autotools_dev dh_testdir -a dh_autotools-dev_updateconfig -a dh_auto_configure -a configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking target system type... powerpc64le-unknown-linux-gnu building for linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make sets $(MAKE)... (cached) yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking for ranlib... ranlib checking how to run the C++ preprocessor... g++ -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... no checking for an ANSI C-conforming const... yes checking for size_t... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes configure: creating ./config.status config.status: creating Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/clustalw_version.h config.status: creating src/config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making all in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making all in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make all-recursive make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo './'`./pairwise/FullPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FullPairwiseAlign.h:9, from ./pairwise/FullPairwiseAlign.cpp:9: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo './'`./pairwise/FastPairwiseAlign.cpp In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./pairwise/../alignment/Alignment.h:42, from ./pairwise/PairwiseAlignBase.h:10, from ./pairwise/FastPairwiseAlign.h:9, from ./pairwise/FastPairwiseAlign.cpp:10: ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSFFileParser.o `test -f './fileInput/MSFFileParser.cpp' || echo './'`./fileInput/MSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileReader.o `test -f './fileInput/FileReader.cpp' || echo './'`./fileInput/FileReader.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./fileInput/FileReader.cpp:29: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PIRFileParser.o `test -f './fileInput/PIRFileParser.cpp' || echo './'`./fileInput/PIRFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RSFFileParser.o `test -f './fileInput/RSFFileParser.cpp' || echo './'`./fileInput/RSFFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o GDEFileParser.o `test -f './fileInput/GDEFileParser.cpp' || echo './'`./fileInput/GDEFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InFileStream.o `test -f './fileInput/InFileStream.cpp' || echo './'`./fileInput/InFileStream.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalFileParser.o `test -f './fileInput/ClustalFileParser.cpp' || echo './'`./fileInput/ClustalFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o PearsonFileParser.o `test -f './fileInput/PearsonFileParser.cpp' || echo './'`./fileInput/PearsonFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o FileParser.o `test -f './fileInput/FileParser.cpp' || echo './'`./fileInput/FileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o EMBLFileParser.o `test -f './fileInput/EMBLFileParser.cpp' || echo './'`./fileInput/EMBLFileParser.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedClusterTree.o `test -f './tree/UPGMA/RootedClusterTree.cpp' || echo './'`./tree/UPGMA/RootedClusterTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/../ClusterTree.h:20, from ./tree/UPGMA/RootedClusterTree.h:8, from ./tree/UPGMA/RootedClusterTree.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UPGMAAlgorithm.o `test -f './tree/UPGMA/UPGMAAlgorithm.cpp' || echo './'`./tree/UPGMA/UPGMAAlgorithm.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/UPGMAAlgorithm.h:8, from ./tree/UPGMA/UPGMAAlgorithm.cpp:4: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Node.o `test -f './tree/UPGMA/Node.cpp' || echo './'`./tree/UPGMA/Node.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedGuideTree.o `test -f './tree/UPGMA/RootedGuideTree.cpp' || echo './'`./tree/UPGMA/RootedGuideTree.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedGuideTree.cpp:10: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RootedTreeOutput.o `test -f './tree/UPGMA/RootedTreeOutput.cpp' || echo './'`./tree/UPGMA/RootedTreeOutput.cpp In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/UPGMA/../../alignment/Alignment.h:42, from ./tree/UPGMA/RootedGuideTree.h:17, from ./tree/UPGMA/RootedTreeOutput.h:15, from ./tree/UPGMA/RootedTreeOutput.cpp:9: ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Tree.o `test -f './tree/Tree.cpp' || echo './'`./tree/Tree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/Tree.h:13, from ./tree/Tree.cpp:10: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTree.o `test -f './tree/ClusterTree.cpp' || echo './'`./tree/ClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/ClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o TreeInterface.o `test -f './tree/TreeInterface.cpp' || echo './'`./tree/TreeInterface.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/TreeInterface.h:19, from ./tree/TreeInterface.cpp:15: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UnRootedClusterTree.o `test -f './tree/UnRootedClusterTree.cpp' || echo './'`./tree/UnRootedClusterTree.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTree.h:20, from ./tree/UnRootedClusterTree.h:8, from ./tree/UnRootedClusterTree.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClusterTreeOutput.o `test -f './tree/ClusterTreeOutput.cpp' || echo './'`./tree/ClusterTreeOutput.cpp In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./tree/../alignment/Alignment.h:42, from ./tree/ClusterTreeOutput.h:11, from ./tree/ClusterTreeOutput.cpp:9: ./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o RandomGenerator.o `test -f './tree/RandomGenerator.cpp' || echo './'`./tree/RandomGenerator.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o NJTree.o `test -f './tree/NJTree.cpp' || echo './'`./tree/NJTree.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentSteps.o `test -f './tree/AlignmentSteps.cpp' || echo './'`./tree/AlignmentSteps.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InteractiveMenu.o `test -f './interface/InteractiveMenu.cpp' || echo './'`./interface/InteractiveMenu.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/InteractiveMenu.h:15, from ./interface/InteractiveMenu.cpp:23: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': ./interface/InteractiveMenu.cpp:1190:29: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o CommandLineParser.o `test -f './interface/CommandLineParser.cpp' || echo './'`./interface/CommandLineParser.cpp In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./interface/../fileInput/../alignment/Alignment.h:42, from ./interface/../fileInput/FileReader.h:12, from ./interface/../Clustal.h:18, from ./interface/CommandLineParser.h:18, from ./interface/CommandLineParser.cpp:13: ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SubMatrix.o `test -f './substitutionMatrix/SubMatrix.cpp' || echo './'`./substitutionMatrix/SubMatrix.cpp In file included from ./substitutionMatrix/SubMatrix.cpp:15:0: ./substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Iteration.o `test -f './multipleAlign/Iteration.cpp' || echo './'`./multipleAlign/Iteration.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/Iteration.h:8, from ./multipleAlign/Iteration.cpp:13: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./multipleAlign/Iteration.cpp:231:32: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MSA.o `test -f './multipleAlign/MSA.cpp' || echo './'`./multipleAlign/MSA.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/MSA.h:10, from ./multipleAlign/MSA.cpp:16: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o MyersMillerProfileAlign.o `test -f './multipleAlign/MyersMillerProfileAlign.cpp' || echo './'`./multipleAlign/MyersMillerProfileAlign.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileAlignAlgorithm.h:10, from ./multipleAlign/MyersMillerProfileAlign.h:10, from ./multipleAlign/MyersMillerProfileAlign.cpp:10: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileStandard.o `test -f './multipleAlign/ProfileStandard.cpp' || echo './'`./multipleAlign/ProfileStandard.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileStandard.h:9, from ./multipleAlign/ProfileStandard.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileWithSub.o `test -f './multipleAlign/ProfileWithSub.cpp' || echo './'`./multipleAlign/ProfileWithSub.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileWithSub.h:9, from ./multipleAlign/ProfileWithSub.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ProfileBase.o `test -f './multipleAlign/ProfileBase.cpp' || echo './'`./multipleAlign/ProfileBase.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/ProfileBase.h:14, from ./multipleAlign/ProfileBase.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o LowScoreSegProfile.o `test -f './multipleAlign/LowScoreSegProfile.cpp' || echo './'`./multipleAlign/LowScoreSegProfile.cpp In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./multipleAlign/../alignment/Alignment.h:42, from ./multipleAlign/LowScoreSegProfile.h:13, from ./multipleAlign/LowScoreSegProfile.cpp:9: ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o OutputFile.o `test -f './general/OutputFile.cpp' || echo './'`./general/OutputFile.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o UserParameters.o `test -f './general/UserParameters.cpp' || echo './'`./general/UserParameters.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Utility.o `test -f './general/Utility.cpp' || echo './'`./general/Utility.cpp ./general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': ./general/Utility.cpp:183:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ ./general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': ./general/Utility.cpp:221:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o InvalidCombination.o `test -f './general/InvalidCombination.cpp' || echo './'`./general/InvalidCombination.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o DebugLog.o `test -f './general/DebugLog.cpp' || echo './'`./general/DebugLog.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ClustalWResources.o `test -f './general/ClustalWResources.cpp' || echo './'`./general/ClustalWResources.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o VectorOutOfRange.o `test -f './general/VectorOutOfRange.cpp' || echo './'`./general/VectorOutOfRange.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o SymMatrix.o `test -f './general/SymMatrix.cpp' || echo './'`./general/SymMatrix.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Stats.o `test -f './general/Stats.cpp' || echo './'`./general/Stats.cpp In file included from ./general/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./general/../alignment/Alignment.h:42, from ./general/Stats.cpp:15: ./general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Help.o `test -f './Help.cpp' || echo './'`./Help.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Alignment.o `test -f './alignment/Alignment.cpp' || echo './'`./alignment/Alignment.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/Alignment.cpp:25: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o AlignmentOutput.o `test -f './alignment/AlignmentOutput.cpp' || echo './'`./alignment/AlignmentOutput.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./alignment/AlignmentOutput.h:24, from ./alignment/AlignmentOutput.cpp:27: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o ObjectiveScore.o `test -f './alignment/ObjectiveScore.cpp' || echo './'`./alignment/ObjectiveScore.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/ObjectiveScore.h:15, from ./alignment/ObjectiveScore.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Sequence.o `test -f './alignment/Sequence.cpp' || echo './'`./alignment/Sequence.cpp g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o Clustal.o `test -f './Clustal.cpp' || echo './'`./Clustal.cpp In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./fileInput/../alignment/Alignment.h:42, from ./fileInput/FileReader.h:12, from ./Clustal.h:18, from ./Clustal.cpp:27: ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -DHAVE_CONFIG_H -I. -D_FORTIFY_SOURCE=2 -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -c -o main.o `test -f './main.cpp' || echo './'`./main.cpp In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0, from ./alignment/Alignment.h:42, from ./main.cpp:10: ./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^ ./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^ g++ -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -o clustalw2 FullPairwiseAlign.o FastPairwiseAlign.o MSFFileParser.o FileReader.o PIRFileParser.o RSFFileParser.o GDEFileParser.o InFileStream.o ClustalFileParser.o PearsonFileParser.o FileParser.o EMBLFileParser.o RootedClusterTree.o UPGMAAlgorithm.o Node.o RootedGuideTree.o RootedTreeOutput.o Tree.o ClusterTree.o TreeInterface.o UnRootedClusterTree.o ClusterTreeOutput.o RandomGenerator.o NJTree.o AlignmentSteps.o InteractiveMenu.o CommandLineParser.o SubMatrix.o Iteration.o MSA.o MyersMillerProfileAlign.o ProfileStandard.o ProfileWithSub.o ProfileBase.o LowScoreSegProfile.o OutputFile.o UserParameters.o Utility.o InvalidCombination.o DebugLog.o ClustalWResources.o VectorOutOfRange.o SymMatrix.o Stats.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o Clustal.o main.o Iteration.o: In function `__destroy*>': /build/buildd/clustalw-2.1+lgpl/src/./multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_auto_test -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making check in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making check in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --with autotools_dev dh_testroot -a dh_prep -a dh_auto_install -a make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' Making install in m4 make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/m4' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal" make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/m4' Making install in src make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' make[4]: Entering directory `/build/buildd/clustalw-2.1+lgpl/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin" /usr/bin/install -c clustalw2 '/build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin' make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl/src' make[2]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Entering directory `/build/buildd/clustalw-2.1+lgpl' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[2]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' debian/rules override_dh_install make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_install # We have to ask upstream if it is important for them that the binary is named clustalw2 mv /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw2 /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw # That is a bit ugly and should be better investigated. rmdir /build/buildd/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal/ make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/clustalw-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory `/build/buildd/clustalw-2.1+lgpl' dh_installexamples -a dh_installman -a dh_installmenu -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform ppc64el: clustalw dh_strip debug symbol extraction: packages to act on: clustalw dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `clustalw-dbgsym' in `../clustalw-dbgsym_2.1+lgpl-4_ppc64el.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 119 pkgstriptranslations: processing clustalw (in debian/clustalw); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalw/DEBIAN/control, package clustalw, directory debian/clustalw .. removing usr/share/doc/clustalw/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalw/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package clustalw took 0 s dpkg-deb: warning: 'debian/clustalw/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalw' in `../clustalw_2.1+lgpl-4_ppc64el.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../clustalw_2.1+lgpl-4_ppc64el.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalw-2.1+lgpl dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140220-0604 Publishing debug debs. chroot-autobuild/build/buildd/clustalw_2.1+lgpl-4_ppc64el.deb: new debian package, version 2.0. size 297912 bytes: control archive=1435 bytes. 1180 bytes, 23 lines control 878 bytes, 12 lines md5sums 185 bytes, 7 lines * postinst #!/bin/sh 160 bytes, 5 lines * postrm #!/bin/sh Package: clustalw Version: 2.1+lgpl-4 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1037 Depends: libc6 (>= 2.17), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) Suggests: clustalx, seaview Enhances: bioperl-run, emboss, t-coffee Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: global multiple nucleotide or peptide sequence alignment This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted. . The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM. chroot-autobuild/build/buildd/clustalw_2.1+lgpl-4_ppc64el.deb: drwxr-xr-x root/root 0 2014-02-20 06:04 ./ drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/ drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/bin/ -rwxr-xr-x root/root 955080 2014-02-20 06:04 ./usr/bin/clustalw drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/ drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/man/ drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/man/man1/ -rw-r--r-- root/root 4184 2014-02-20 06:04 ./usr/share/man/man1/clustalw.1.gz drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/menu/ -rw-r--r-- root/root 193 2013-12-13 03:21 ./usr/share/menu/clustalw drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/doc/clustalw/ -rw-r--r-- root/root 715 2010-09-09 10:26 ./usr/share/doc/clustalw/README -rw-r--r-- root/root 2091 2013-12-13 03:21 ./usr/share/doc/clustalw/copyright drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/doc/clustalw/examples/ drwxr-xr-x root/root 0 2013-12-13 03:21 ./usr/share/doc/clustalw/examples/tests.clustalw/ -rw-r--r-- root/root 157 2013-12-13 03:21 ./usr/share/doc/clustalw/examples/tests.clustalw/seq -rw-r--r-- root/root 1007 2013-12-13 03:21 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc.data -rw-r--r-- root/root 1013 2013-12-13 03:21 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc2.data -rw-r--r-- root/root 552 2013-12-13 03:21 ./usr/share/doc/clustalw/examples/tests.clustalw/Makefile -rw-r--r-- root/root 2045 2014-02-20 06:04 ./usr/share/doc/clustalw/changelog.Debian.gz -rw-r--r-- root/root 821 2013-12-13 03:21 ./usr/share/doc/clustalw/README.Debian drwxr-xr-x root/root 0 2014-02-20 06:04 ./usr/share/clustalw/ -rw-r--r-- root/root 33752 2010-11-12 11:53 ./usr/share/clustalw/clustalw_help clustalw_2.1+lgpl-4_ppc64el.changes: Format: 1.8 Date: Fri, 13 Dec 2013 09:18:40 +0100 Source: clustalw Binary: clustalw Architecture: ppc64el Version: 2.1+lgpl-4 Distribution: trusty Urgency: medium Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: clustalw - global multiple nucleotide or peptide sequence alignment Closes: 729789 Changes: clustalw (2.1+lgpl-4) unstable; urgency=medium . * use dh_autotools-dev to update config.{sub,guess} (Thanks for the patch to Adam Conrad ) Closes: #729789 * Standards-Version: 3.9.5 (no changes needed) Checksums-Sha1: bb9cbf3360fb4a2de77ad3352bd6a8fcdf4bf6be 297912 clustalw_2.1+lgpl-4_ppc64el.deb Checksums-Sha256: 6c3a4dd68e26eae669ed26f8bec618c8e456223a15297a3feffc70d145cb74bc 297912 clustalw_2.1+lgpl-4_ppc64el.deb Files: 7fd6d60c7eaccb9f1dee34fa3986207d 297912 science optional clustalw_2.1+lgpl-4_ppc64el.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140220-0604 Build needed 00:01:27, 48472k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5597234'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5597234/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5597234'] Unmounting chroot for build PACKAGEBUILD-5597234... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5597234'] Removing build PACKAGEBUILD-5597234