RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '3a1ca099d868b1739fc432492044145816e836a3', '/home/buildd/filecache-default/c29748c664333d5438f2f37c88d47350c943494e'] Synching the system clock with the buildd NTP service... 27 Nov 16:15:08 ntpdate[19690]: adjust time server 10.211.37.1 offset -0.000587 sec Unpacking chroot for build 3a1ca099d868b1739fc432492044145816e836a3 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '3a1ca099d868b1739fc432492044145816e836a3'] Mounting chroot for build 3a1ca099d868b1739fc432492044145816e836a3 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '3a1ca099d868b1739fc432492044145816e836a3', 'deb http://ftpmaster.internal/ubuntu precise main restricted universe multiverse'] Overriding sources.list in build-3a1ca099d868b1739fc432492044145816e836a3 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '3a1ca099d868b1739fc432492044145816e836a3', 'armel'] Updating debian chroot for build 3a1ca099d868b1739fc432492044145816e836a3 Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main armel Packages [1249 kB] Get:4 http://ftpmaster.internal precise/restricted armel Packages [14 B] Get:5 http://ftpmaster.internal precise/universe armel Packages [4545 kB] Get:6 http://ftpmaster.internal precise/multiverse armel Packages [109 kB] Get:7 http://ftpmaster.internal precise/main TranslationIndex [3502 B] Get:8 http://ftpmaster.internal precise/multiverse TranslationIndex [2472 B] Get:9 http://ftpmaster.internal precise/restricted TranslationIndex [2464 B] Get:10 http://ftpmaster.internal precise/universe TranslationIndex [2712 B] Get:11 http://ftpmaster.internal precise/main Translation-en [714 kB] Get:12 http://ftpmaster.internal precise/multiverse Translation-en [95.3 kB] Get:13 http://ftpmaster.internal precise/restricted Translation-en [2229 B] Get:14 http://ftpmaster.internal precise/universe Translation-en [3294 kB] Fetched 10.1 MB in 51s (195 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils coreutils cpp-4.6 debconf dpkg dpkg-dev g++-4.6 gcc-4.6 gcc-4.6-base gnupg gpgv initramfs-tools initramfs-tools-bin initscripts libacl1 libalgorithm-diff-xs-perl libattr1 libcurl3-gnutls libdpkg-perl libgcc1 libgnutls26 libgomp1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 libncurses5 libncursesw5 libreadline6 libsasl2-2 libstdc++6 libstdc++6-4.6-dev libtinfo5 libudev0 linux-libc-dev locales module-init-tools ncurses-base ncurses-bin perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler procps python-minimal readline-common sysv-rc sysvinit-utils tar ubuntu-keyring udev 55 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 38.9 MB of archives. After this operation, 11.1 MB disk space will be freed. WARNING: The following packages cannot be authenticated! base-files libattr1 libacl1 dpkg coreutils libncursesw5 libtinfo5 libncurses5 ncurses-bin perl libalgorithm-diff-xs-perl perl-base perl-modules libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 libmpfr4 binutils tar ncurses-base python-minimal readline-common libreadline6 debconf libudev0 module-init-tools libgnutls26 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libsasl2-2 libldap-2.4-2 libcurl3-gnutls gpgv gnupg ubuntu-keyring initramfs-tools initramfs-tools-bin sysvinit-utils sysv-rc initscripts procps udev locales dpkg-dev libdpkg-perl linux-libc-dev pkg-create-dbgsym pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main base-files armel 6.5ubuntu3 [68.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libattr1 armel 1:2.4.46-3ubuntu1 [9428 B] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libacl1 armel 2.2.51-4ubuntu1 [14.6 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main dpkg armel 1.16.1.2ubuntu1 [1755 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main coreutils armel 8.13-3ubuntu2 [1946 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libncursesw5 armel 5.9-4 [109 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libtinfo5 armel 5.9-4 [80.8 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libncurses5 armel 5.9-4 [87.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main ncurses-bin armel 5.9-4 [147 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main perl armel 5.14.2-5ubuntu1 [3618 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libalgorithm-diff-xs-perl armel 0.04-2build2 [11.8 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main perl-base armel 5.14.2-5ubuntu1 [1351 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main perl-modules all 5.14.2-5ubuntu1 [3369 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 armel 4.6.2-5ubuntu1 [23.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base armel 4.6.2-5ubuntu1 [15.4 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 armel 1:4.6.2-5ubuntu1 [22.0 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 armel 4.6.2-5ubuntu1 [4080 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev armel 4.6.2-5ubuntu1 [1695 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 armel 4.6.2-5ubuntu1 [4918 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 armel 4.6.2-5ubuntu1 [4507 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 armel 4.6.2-5ubuntu1 [268 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libmpfr4 armel 3.1.0-3 [180 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main binutils armel 2.22-1ubuntu1 [2256 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main tar armel 1.25-3ubuntu1 [188 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main ncurses-base all 5.9-4 [21.0 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main python-minimal all 2.7.2-9ubuntu1 [29.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main readline-common armel 6.2-8 [49.9 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libreadline6 armel 6.2-8 [112 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main debconf armel 1.5.41ubuntu1 [145 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libudev0 armel 175-0ubuntu2 [26.2 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main module-init-tools armel 3.16-1ubuntu2 [83.4 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libgnutls26 armel 2.12.14-3 [409 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libk5crypto3 armel 1.9.1+dfsg-3ubuntu1 [80.1 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libgssapi-krb5-2 armel 1.9.1+dfsg-3ubuntu1 [94.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-3 armel 1.9.1+dfsg-3ubuntu1 [287 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libkrb5support0 armel 1.9.1+dfsg-3ubuntu1 [19.9 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libsasl2-2 armel 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3 [54.3 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libldap-2.4-2 armel 2.4.25-3ubuntu3 [150 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libcurl3-gnutls armel 7.22.0-3ubuntu1 [201 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main gpgv armel 1.4.11-3ubuntu2 [152 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main gnupg armel 1.4.11-3ubuntu2 [720 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main ubuntu-keyring armel 2011.11.21 [11.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools armel 0.99ubuntu9 [48.6 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main initramfs-tools-bin armel 0.99ubuntu9 [11.3 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main sysvinit-utils armel 2.88dsf-13.10ubuntu5 [57.6 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main sysv-rc all 2.88dsf-13.10ubuntu5 [44.5 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main initscripts armel 2.88dsf-13.10ubuntu5 [26.8 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main procps armel 1:3.2.8-11ubuntu4 [227 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main udev armel 175-0ubuntu2 [293 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main locales all 2.13+git20111116-1 [3349 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev armel 1.16.1.2ubuntu1 [468 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl armel 1.16.1.2ubuntu1 [181 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main linux-libc-dev armel 3.2.0-2.4 [820 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main pkg-create-dbgsym all 0.50 [8334 B] Get:55 http://ftpmaster.internal/ubuntu/ precise/main pkgbinarymangler all 106 [27.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.9 MB in 26s (1482 kB/s) (Reading database ... 13975 files and directories currently installed.) Preparing to replace base-files 6.5ubuntu2 (using .../base-files_6.5ubuntu3_armel.deb) ... Unpacking replacement base-files ... Setting up base-files (6.5ubuntu3) ... (Reading database ... 13975 files and directories currently installed.) Preparing to replace libattr1 1:2.4.46-3 (using .../libattr1_1%3a2.4.46-3ubuntu1_armel.deb) ... Unpacking replacement libattr1 ... Setting up libattr1 (1:2.4.46-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13975 files and directories currently installed.) Preparing to replace libacl1 2.2.51-3 (using .../libacl1_2.2.51-4ubuntu1_armel.deb) ... Unpacking replacement libacl1 ... Setting up libacl1 (2.2.51-4ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13975 files and directories currently installed.) Preparing to replace dpkg 1.16.1.1ubuntu3 (using .../dpkg_1.16.1.2ubuntu1_armel.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.1.2ubuntu1) ... (Reading database ... 13975 files and directories currently installed.) Preparing to replace coreutils 8.13-3ubuntu1 (using .../coreutils_8.13-3ubuntu2_armel.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.13-3ubuntu2) ... (Reading database ... 13975 files and directories currently installed.) Preparing to replace libncursesw5 5.9-2 (using .../libncursesw5_5.9-4_armel.deb) ... Unpacking replacement libncursesw5 ... Preparing to replace libtinfo5 5.9-2 (using .../libtinfo5_5.9-4_armel.deb) ... Unpacking replacement libtinfo5 ... Replacing files in old package libncurses5 ... Setting up libtinfo5 (5.9-4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13973 files and directories currently installed.) Preparing to replace libncurses5 5.9-2 (using .../libncurses5_5.9-4_armel.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.9-4) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13973 files and directories currently installed.) Preparing to replace ncurses-bin 5.9-2 (using .../ncurses-bin_5.9-4_armel.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.9-4) ... (Reading database ... 13973 files and directories currently installed.) Preparing to replace perl 5.12.4-6 (using .../perl_5.14.2-5ubuntu1_armel.deb) ... Unpacking replacement perl ... Preparing to replace libalgorithm-diff-xs-perl 0.04-2 (using .../libalgorithm-diff-xs-perl_0.04-2build2_armel.deb) ... Unpacking replacement libalgorithm-diff-xs-perl ... Preparing to replace perl-base 5.12.4-6 (using .../perl-base_5.14.2-5ubuntu1_armel.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-5ubuntu1) ... (Reading database ... 14004 files and directories currently installed.) Preparing to replace perl-modules 5.12.4-6 (using .../perl-modules_5.14.2-5ubuntu1_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libgomp1 4.6.2-2ubuntu1 (using .../libgomp1_4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.2-2ubuntu1 (using .../gcc-4.6-base_4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.2-5ubuntu1) ... (Reading database ... 14051 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.2-2ubuntu1 (using .../libgcc1_1%3a4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.2-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14051 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.2-2ubuntu1 (using .../cpp-4.6_4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libstdc++6-4.6-dev 4.6.2-2ubuntu1 (using .../libstdc++6-4.6-dev_4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.2-2ubuntu1 (using .../g++-4.6_4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.2-2ubuntu1 (using .../gcc-4.6_4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.2-2ubuntu1 (using .../libstdc++6_4.6.2-5ubuntu1_armel.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.2-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14051 files and directories currently installed.) Preparing to replace libmpfr4 3.1.0-2 (using .../libmpfr4_3.1.0-3_armel.deb) ... Unpacking replacement libmpfr4 ... Preparing to replace binutils 2.21.90.20111025-1ubuntu1 (using .../binutils_2.22-1ubuntu1_armel.deb) ... Unpacking replacement binutils ... Preparing to replace tar 1.25-3 (using .../tar_1.25-3ubuntu1_armel.deb) ... Unpacking replacement tar ... Setting up tar (1.25-3ubuntu1) ... (Reading database ... 14051 files and directories currently installed.) Preparing to replace ncurses-base 5.9-2 (using .../ncurses-base_5.9-4_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.9-4) ... Installing new version of config file /etc/terminfo/README ... (Reading database ... 14051 files and directories currently installed.) Preparing to replace python-minimal 2.7.2-7ubuntu4 (using .../python-minimal_2.7.2-9ubuntu1_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.7.2-9ubuntu1) ... (Reading database ... 14051 files and directories currently installed.) Preparing to replace readline-common 6.2-7ubuntu1 (using .../readline-common_6.2-8_armel.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2-8) ... (Reading database ... 14051 files and directories currently installed.) Preparing to replace libreadline6 6.2-7ubuntu1 (using .../libreadline6_6.2-8_armel.deb) ... Unpacking replacement libreadline6 ... Setting up libreadline6 (6.2-8) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14051 files and directories currently installed.) Preparing to replace debconf 1.5.40ubuntu1 (using .../debconf_1.5.41ubuntu1_armel.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.41ubuntu1) ... (Reading database ... 14048 files and directories currently installed.) Preparing to replace libudev0 175-0ubuntu1 (using .../libudev0_175-0ubuntu2_armel.deb) ... Unpacking replacement libudev0 ... Preparing to replace module-init-tools 3.16-1ubuntu1 (using .../module-init-tools_3.16-1ubuntu2_armel.deb) ... Unpacking replacement module-init-tools ... Preparing to replace libgnutls26 2.12.11-1 (using .../libgnutls26_2.12.14-3_armel.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libk5crypto3 1.9.1+dfsg-1ubuntu2.1 (using .../libk5crypto3_1.9.1+dfsg-3ubuntu1_armel.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.9.1+dfsg-1ubuntu2.1 (using .../libgssapi-krb5-2_1.9.1+dfsg-3ubuntu1_armel.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.9.1+dfsg-1ubuntu2.1 (using .../libkrb5-3_1.9.1+dfsg-3ubuntu1_armel.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.9.1+dfsg-1ubuntu2.1 (using .../libkrb5support0_1.9.1+dfsg-3ubuntu1_armel.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libsasl2-2 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu2 (using .../libsasl2-2_2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3_armel.deb) ... Unpacking replacement libsasl2-2 ... Preparing to replace libldap-2.4-2 2.4.25-3ubuntu1 (using .../libldap-2.4-2_2.4.25-3ubuntu3_armel.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace libcurl3-gnutls 7.21.7-3ubuntu1 (using .../libcurl3-gnutls_7.22.0-3ubuntu1_armel.deb) ... Unpacking replacement libcurl3-gnutls ... Preparing to replace gpgv 1.4.11-3ubuntu1 (using .../gpgv_1.4.11-3ubuntu2_armel.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.11-3ubuntu2) ... (Reading database ... 14048 files and directories currently installed.) Preparing to replace gnupg 1.4.11-3ubuntu1 (using .../gnupg_1.4.11-3ubuntu2_armel.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.11-3ubuntu2) ... (Reading database ... 14048 files and directories currently installed.) Preparing to replace ubuntu-keyring 2010.+09.30 (using .../ubuntu-keyring_2011.11.21_armel.deb) ... Unpacking replacement ubuntu-keyring ... Setting up ubuntu-keyring (2011.11.21) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: Total number processed: 2 gpg: unchanged: 2 (Reading database ... 14048 files and directories currently installed.) Preparing to replace initramfs-tools 0.99ubuntu8 (using .../initramfs-tools_0.99ubuntu9_armel.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.99ubuntu8 (using .../initramfs-tools-bin_0.99ubuntu9_armel.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace sysvinit-utils 2.88dsf-13.10ubuntu4 (using .../sysvinit-utils_2.88dsf-13.10ubuntu5_armel.deb) ... Unpacking replacement sysvinit-utils ... Preparing to replace sysv-rc 2.88dsf-13.10ubuntu4 (using .../sysv-rc_2.88dsf-13.10ubuntu5_all.deb) ... Unpacking replacement sysv-rc ... Preparing to replace initscripts 2.88dsf-13.10ubuntu4 (using .../initscripts_2.88dsf-13.10ubuntu5_armel.deb) ... Unpacking replacement initscripts ... Preparing to replace procps 1:3.2.8-11ubuntu1 (using .../procps_1%3a3.2.8-11ubuntu4_armel.deb) ... invoke-rc.d: policy-rc.d denied execution of stop. Unpacking replacement procps ... Preparing to replace udev 175-0ubuntu1 (using .../udev_175-0ubuntu2_armel.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace locales 2.13+git20110622-2 (using .../locales_2.13+git20111116-1_all.deb) ... Unpacking replacement locales ... Preparing to replace dpkg-dev 1.16.1.1ubuntu3 (using .../dpkg-dev_1.16.1.2ubuntu1_armel.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.1.1ubuntu3 (using .../libdpkg-perl_1.16.1.2ubuntu1_armel.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace linux-libc-dev 3.1.0-2.3 (using .../linux-libc-dev_3.2.0-2.4_armel.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace pkg-create-dbgsym 0.49 (using .../pkg-create-dbgsym_0.50_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 105 (using .../pkgbinarymangler_106_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libncursesw5 (5.9-4) ... Setting up libgomp1 (4.6.2-5ubuntu1) ... Setting up libmpfr4 (3.1.0-3) ... Setting up cpp-4.6 (4.6.2-5ubuntu1) ... Setting up binutils (2.22-1ubuntu1) ... Setting up gcc-4.6 (4.6.2-5ubuntu1) ... Setting up libudev0 (175-0ubuntu2) ... Setting up module-init-tools (3.16-1ubuntu2) ... Setting up libgnutls26 (2.12.14-3) ... Setting up libkrb5support0 (1.9.1+dfsg-3ubuntu1) ... Setting up libk5crypto3 (1.9.1+dfsg-3ubuntu1) ... Setting up libkrb5-3 (1.9.1+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2 (1.9.1+dfsg-3ubuntu1) ... Setting up libsasl2-2 (2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3) ... Setting up libldap-2.4-2 (2.4.25-3ubuntu3) ... Setting up libcurl3-gnutls (7.22.0-3ubuntu1) ... Setting up initramfs-tools-bin (0.99ubuntu9) ... Setting up sysvinit-utils (2.88dsf-13.10ubuntu5) ... Setting up sysv-rc (2.88dsf-13.10ubuntu5) ... Setting up initscripts (2.88dsf-13.10ubuntu5) ... guest environment detected: Linking /run/shm to /dev/shm Setting up procps (1:3.2.8-11ubuntu4) ... Installing new version of config file /etc/init/procps.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up locales (2.13+git20111116-1) ... Setting up linux-libc-dev (3.2.0-2.4) ... Setting up pkg-create-dbgsym (0.50) ... Setting up pkgbinarymangler (106) ... Setting up perl-modules (5.14.2-5ubuntu1) ... Setting up perl (5.14.2-5ubuntu1) ... Setting up libalgorithm-diff-xs-perl (0.04-2build2) ... Setting up libstdc++6-4.6-dev (4.6.2-5ubuntu1) ... Setting up udev (175-0ubuntu2) ... Installing new version of config file /etc/init/udev.conf ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up initramfs-tools (0.99ubuntu9) ... update-initramfs: deferring update (trigger activated) Setting up libdpkg-perl (1.16.1.2ubuntu1) ... Setting up dpkg-dev (1.16.1.2ubuntu1) ... Setting up g++-4.6 (4.6.2-5ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '3a1ca099d868b1739fc432492044145816e836a3', 'armel', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=armel', '--comp=multiverse', 'clustalx_2.1+lgpl-2.dsc'] Initiating build 3a1ca099d868b1739fc432492044145816e836a3 with 0 processor cores. Automatic build of clustalx_2.1+lgpl-2 on kaylaberry by sbuild/armel 1.170.5 Build started at 20111127-1620 ****************************************************************************** clustalx_2.1+lgpl-2.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), libqt4-dev sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing libqt4-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper libqt4-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils file fontconfig fontconfig-config gettext gettext-base groff-base html2text intltool-debian libaudio2 libcroco3 libegl1-mesa libexpat1 libfontconfig1 libfreetype6 libgbm1 libgettextpo0 libice6 libjpeg8 liblcms1 libllvm2.9 libmagic1 libmng1 libpipeline1 libpthread-stubs0 libpthread-stubs0-dev libqt4-dbus libqt4-declarative libqt4-designer libqt4-help libqt4-network libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libsm6 libtiff4 libunistring0 libwayland0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxt6 man-db po-debconf qdbus qt4-linguist-tools qt4-qmake ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make defoma gettext-doc groff nas liblcms-utils libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer libmysqlclient-dev libpq-dev libsqlite3-dev qt4-dev-tools qt4-doc unixodbc-dev qt4-qtconfig less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libegl1-mesa-drivers libqt4-opengl-dev libqtwebkit-dev libqt4-sql-mysql libqt4-sql-odbc libqt4-sql-psql libqt4-sql-sqlite libcups2 libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils debhelper file fontconfig fontconfig-config gettext gettext-base groff-base html2text intltool-debian libaudio2 libcroco3 libegl1-mesa libexpat1 libfontconfig1 libfreetype6 libgbm1 libgettextpo0 libice6 libjpeg8 liblcms1 libllvm2.9 libmagic1 libmng1 libpipeline1 libpthread-stubs0 libpthread-stubs0-dev libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-help libqt4-network libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtgui4 libsm6 libtiff4 libunistring0 libwayland0 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-xfixes0 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxt6 man-db po-debconf qdbus qt4-linguist-tools qt4-qmake ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 39.9 MB of archives. After this operation, 107 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libxrender1 x11-common libice6 libsm6 libxt6 libaudio2 libcroco3 libllvm2.9 libgbm1 libwayland0 libx11-xcb1 libxcb-dri2-0 libxcb-xfixes0 libegl1-mesa libunistring0 libgettextpo0 libjpeg8 liblcms1 libmng1 libqtcore4 libqt4-xml qdbus libqt4-dbus libqt4-network libqt4-script libqt4-sql libqt4-xmlpatterns fontconfig libtiff4 libxi6 libqtgui4 libqt4-declarative libqt4-designer libqt4-help libqt4-qt3support libqt4-scripttools libqt4-svg libqt4-test libmagic1 file bsdmainutils gettext-base groff-base man-db html2text gettext intltool-debian po-debconf debhelper libpthread-stubs0 libpthread-stubs0-dev qt4-linguist-tools qt4-qmake xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libxcb1-dev libx11-dev libqt4-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 armel 2.0.1-7.2 [102 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 armel 2.4.8-1 [270 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core armel 2.33-2 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config armel 2.8.0-3ubuntu2 [44.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 armel 2.8.0-3ubuntu2 [106 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 armel 1.2.0-5 [20.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxau6 armel 1:1.0.6-4 [7142 B] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 armel 1:1.1.0-4 [11.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 armel 1.7-4 [33.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libx11-data armel 2:1.4.4-4 [172 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 armel 2:1.4.4-4 [682 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libxext6 armel 2:1.3.0-3 [27.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libxml2 armel 2.7.8.dfsg-5ubuntu1 [551 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 armel 1:0.9.6-2 [16.8 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main x11-common armel 1:7.6+7ubuntu7 [56.6 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libice6 armel 2:1.0.7-2 [37.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libsm6 armel 2:1.2.0-2 [15.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libxt6 armel 1:1.1.1-2 [146 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libaudio2 armel 1.9.3-1 [48.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 armel 0.6.2-2 [81.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libllvm2.9 armel 2.9+dfsg-3ubuntu3 [5927 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libgbm1 armel 7.11-0ubuntu4 [602 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libwayland0 armel 0.1.0~0.2-0ubuntu3 [25.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libx11-xcb1 armel 2:1.4.4-4 [10.0 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libxcb-dri2-0 armel 1.7-4 [5804 B] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libxcb-xfixes0 armel 1.7-4 [8138 B] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libegl1-mesa armel 7.11-0ubuntu4 [45.4 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 armel 0.9.3-5 [394 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 armel 0.18.1.1-5ubuntu2 [99.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libjpeg8 armel 8c-2ubuntu4 [112 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main liblcms1 armel 1.19.dfsg-1ubuntu3 [88.4 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libmng1 armel 1.0.10-3 [174 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libqtcore4 armel 4:4.7.4-1ubuntu4 [2626 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libqt4-xml armel 4:4.7.4-1ubuntu4 [92.0 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main qdbus armel 4:4.7.4-1ubuntu4 [29.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libqt4-dbus armel 4:4.7.4-1ubuntu4 [173 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libqt4-network armel 4:4.7.4-1ubuntu4 [568 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libqt4-script armel 4:4.7.4-1ubuntu4 [690 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libqt4-sql armel 4:4.7.4-1ubuntu4 [92.7 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libqt4-xmlpatterns armel 4:4.7.4-1ubuntu4 [1142 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main fontconfig armel 2.8.0-3ubuntu2 [157 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main libtiff4 armel 3.9.5-2 [120 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libxi6 armel 2:1.4.3-3ubuntu1 [24.6 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libqtgui4 armel 4:4.7.4-1ubuntu4 [4155 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libqt4-declarative armel 4:4.7.4-1ubuntu4 [1055 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libqt4-designer armel 4:4.7.4-1ubuntu4 [4006 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libqt4-help armel 4:4.7.4-1ubuntu4 [212 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libqt4-qt3support armel 4:4.7.4-1ubuntu4 [1051 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libqt4-scripttools armel 4:4.7.4-1ubuntu4 [225 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libqt4-svg armel 4:4.7.4-1ubuntu4 [143 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libqt4-test armel 4:4.7.4-1ubuntu4 [57.5 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 armel 5.09-2 [213 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main file armel 5.09-2 [18.9 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils armel 8.2.3 [194 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main gettext-base armel 0.18.1.1-5ubuntu2 [54.7 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main groff-base armel 1.21-6 [934 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main man-db armel 2.6.0.2-3 [671 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main html2text armel 1.3.2a-15 [94.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main gettext armel 0.18.1.1-5ubuntu2 [1050 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main po-debconf armel 1.0.16+nmu1ubuntu1 [211 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main debhelper armel 8.9.9ubuntu1 [477 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 armel 0.3-2.1ubuntu1 [3372 B] Get:65 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev armel 0.3-2.1ubuntu1 [2490 B] Get:66 http://ftpmaster.internal/ubuntu/ precise/main qt4-linguist-tools armel 4:4.7.4-1ubuntu4 [934 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main qt4-qmake armel 4:4.7.4-1ubuntu4 [1406 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools armel 1:1.8-2 [10.9 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev armel 7.0.22-1 [299 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev armel 1:1.0.6-4 [9306 B] Get:71 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev armel 1:1.1.0-4 [25.2 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev armel 2.0.2-2ubuntu1 [69.0 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev armel 1.0.5-2 [27.6 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev armel 1.2.6-2 [82.9 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev armel 1.7-4 [70.6 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev armel 2:1.4.4-4 [805 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main libqt4-dev armel 4:4.7.4-1ubuntu4 [4055 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.9 MB in 19s (2008 kB/s) Selecting previously unselected package libexpat1. (Reading database ... 14050 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_armel.deb) ... Selecting previously unselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_armel.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_armel.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3ubuntu2_armel.deb) ... Selecting previously unselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3ubuntu2_armel.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_armel.deb) ... Selecting previously unselected package libxau6. 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Unpacking file (from .../archives/file_5.09-2_armel.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armel.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-5ubuntu2_armel.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_armel.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-3_armel.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-5ubuntu2_armel.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1ubuntu1_armel.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.9ubuntu1_armel.deb) ... Selecting previously unselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-2.1ubuntu1_armel.deb) ... Selecting previously unselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-2.1ubuntu1_armel.deb) ... Selecting previously unselected package qt4-linguist-tools. Unpacking qt4-linguist-tools (from .../qt4-linguist-tools_4%3a4.7.4-1ubuntu4_armel.deb) ... Selecting previously unselected package qt4-qmake. Unpacking qt4-qmake (from .../qt4-qmake_4%3a4.7.4-1ubuntu4_armel.deb) ... Selecting previously unselected package xorg-sgml-doctools. Unpacking xorg-sgml-doctools (from .../xorg-sgml-doctools_1%3a1.8-2_armel.deb) ... Selecting previously unselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.22-1_armel.deb) ... Selecting previously unselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-4_armel.deb) ... Selecting previously unselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-4_armel.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.0.2-2ubuntu1_armel.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-2_armel.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-2_armel.deb) ... Selecting previously unselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.7-4_armel.deb) ... Selecting previously unselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.4-4_armel.deb) ... Selecting previously unselected package libqt4-dev. Unpacking libqt4-dev (from .../libqt4-dev_4%3a4.7.4-1ubuntu4_armel.deb) ... Setting up libexpat1 (2.0.1-7.2) ... Setting up libfreetype6 (2.4.8-1) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3ubuntu2) ... Setting up libfontconfig1 (2.8.0-3ubuntu2) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxau6 (1:1.0.6-4) ... Setting up libxdmcp6 (1:1.1.0-4) ... Setting up libxcb1 (1.7-4) ... Setting up libx11-data (2:1.4.4-4) ... Setting up libx11-6 (2:1.4.4-4) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up x11-common (1:7.6+7ubuntu7) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.7-2) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libaudio2 (1.9.3-1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libllvm2.9 (2.9+dfsg-3ubuntu3) ... Setting up libgbm1 (7.11-0ubuntu4) ... Setting up libwayland0 (0.1.0~0.2-0ubuntu3) ... Setting up libx11-xcb1 (2:1.4.4-4) ... Setting up libxcb-dri2-0 (1.7-4) ... Setting up libxcb-xfixes0 (1.7-4) ... Setting up libegl1-mesa (7.11-0ubuntu4) ... update-alternatives: using /usr/lib/arm-linux-gnueabi/mesa-egl/ld.so.conf to provide /etc/ld.so.conf.d/arm-linux-gnueabi_EGL.conf (arm-linux-gnueabi_egl_conf) in auto mode. Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu2) ... Setting up libjpeg8 (8c-2ubuntu4) ... Setting up liblcms1 (1.19.dfsg-1ubuntu3) ... Setting up libmng1 (1.0.10-3) ... Setting up libqtcore4 (4:4.7.4-1ubuntu4) ... Setting up libqt4-xml (4:4.7.4-1ubuntu4) ... Setting up libqt4-sql (4:4.7.4-1ubuntu4) ... Setting up fontconfig (2.8.0-3ubuntu2) ... Cleaning up old fontconfig caches... done. Regenerating fonts cache... done. Setting up libtiff4 (3.9.5-2) ... Setting up libxi6 (2:1.4.3-3ubuntu1) ... Setting up libqt4-test (4:4.7.4-1ubuntu4) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu2) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1ubuntu1) ... Setting up debhelper (8.9.9ubuntu1) ... Setting up libpthread-stubs0 (0.3-2.1ubuntu1) ... Setting up libpthread-stubs0-dev (0.3-2.1ubuntu1) ... Setting up qt4-linguist-tools (4:4.7.4-1ubuntu4) ... update-alternatives: using /usr/bin/lupdate-qt4 to provide /usr/bin/lupdate (lupdate) in auto mode. update-alternatives: using /usr/bin/lrelease-qt4 to provide /usr/bin/lrelease (lrelease) in auto mode. Setting up qt4-qmake (4:4.7.4-1ubuntu4) ... update-alternatives: using /usr/bin/qmake-qt4 to provide /usr/bin/qmake (qmake) in auto mode. Setting up xorg-sgml-doctools (1:1.8-2) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-4) ... Setting up libxdmcp-dev (1:1.1.0-4) ... Setting up x11proto-input-dev (2.0.2-2ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libxcb1-dev (1.7-4) ... Setting up libx11-dev (2:1.4.4-4) ... Setting up qdbus (4:4.7.4-1ubuntu4) ... Setting up libqtgui4 (4:4.7.4-1ubuntu4) ... Setting up libqt4-svg (4:4.7.4-1ubuntu4) ... Setting up libqt4-dbus (4:4.7.4-1ubuntu4) ... Setting up libqt4-network (4:4.7.4-1ubuntu4) ... Setting up libqt4-script (4:4.7.4-1ubuntu4) ... Setting up libqt4-xmlpatterns (4:4.7.4-1ubuntu4) ... Setting up libqt4-declarative (4:4.7.4-1ubuntu4) ... Setting up libqt4-designer (4:4.7.4-1ubuntu4) ... Setting up libqt4-help (4:4.7.4-1ubuntu4) ... Setting up libqt4-qt3support (4:4.7.4-1ubuntu4) ... Setting up libqt4-scripttools (4:4.7.4-1ubuntu4) ... Setting up libqt4-dev (4:4.7.4-1ubuntu4) ... update-alternatives: using /usr/bin/moc-qt4 to provide /usr/bin/moc (moc) in auto mode. update-alternatives: using /usr/bin/uic-qt4 to provide /usr/bin/uic (uic) in auto mode. update-alternatives: warning: skip creation of /usr/share/man/man1/uic.1.gz because associated file /usr/share/man/man1/uic-qt4.1.gz (of link group uic) doesn't exist. Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu5 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu1 gcc-4.6_4.6.2-5ubuntu1 g++-4.6_4.6.2-5ubuntu1 binutils_2.22-1ubuntu1 libstdc++6-4.6-dev_4.6.2-5ubuntu1 libstdc++6_4.6.2-5ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Wed Nov 16 06:30:25 2011 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-2.dsc dpkg-source: info: extracting clustalx in clustalx-2.1+lgpl dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-2.debian.tar.gz dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package clustalx dpkg-buildpackage: source version 2.1+lgpl-2 dpkg-source --before-build clustalx-2.1+lgpl dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory `/build/buildd/clustalx-2.1+lgpl' rm -f moc_* dh_clean make[1]: Leaving directory `/build/buildd/clustalx-2.1+lgpl' debian/rules build dh build dh_testdir debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/clustalx-2.1+lgpl' qmake-qt4 make[1]: Leaving directory `/build/buildd/clustalx-2.1+lgpl' dh_auto_build make[1]: Entering directory `/build/buildd/clustalx-2.1+lgpl' g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentParameters.o AlignmentParameters.cpp AlignmentParameters.cpp:48:6: warning: unused parameter 'event' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeGapPenaltyData()': AlignmentViewerWidget.cpp:588:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentViewerWidget.cpp: In member function 'int AlignmentViewerWidget::makeSecStructData()': AlignmentViewerWidget.cpp:645:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentViewerWidget.cpp:652:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentViewerWidget.cpp: At global scope: AlignmentViewerWidget.cpp:781:6: warning: unused parameter 'event' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentWidget.o AlignmentWidget.cpp AlignmentWidget.h: In constructor 'AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)': AlignmentWidget.h:170:10: warning: 'AlignmentWidget::blackAndWhite' will be initialized after [-Wreorder] AlignmentWidget.h:161:27: warning: 'std::vector >* AlignmentWidget::selectedColoredRes' [-Wreorder] AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] AlignmentWidget.cpp: In member function 'void AlignmentWidget::calculatePixMaps()': AlignmentWidget.cpp:225:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:235:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:268:78: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:280:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:291:88: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:215:9: warning: unused variable 'codeForSpace' [-Wunused-variable] AlignmentWidget.cpp: In member function 'void AlignmentWidget::generateSecStructurePixmaps()': AlignmentWidget.cpp:333:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp: In member function 'void AlignmentWidget::drawContents(QPainter*, int, int, int, int)': AlignmentWidget.cpp:569:64: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp: In member function 'void AlignmentWidget::calcConserveInfo()': AlignmentWidget.cpp:689:50: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:693:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:700:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:701:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:725:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:737:60: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:760:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp:771:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp: In member function 'void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)': AlignmentWidget.cpp:878:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp: In member function 'QString AlignmentWidget::initConsensus()': AlignmentWidget.cpp:927:60: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] AlignmentWidget.cpp: In member function 'void AlignmentWidget::generatePixMaps()': AlignmentWidget.cpp:1039:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignOutputFileNames.o AlignOutputFileNames.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ColorFileXmlParser.o ColorFileXmlParser.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] ColorFileXmlParser.cpp:84:5: warning: unused parameter 'parentItem' [-Wunused-parameter] ColorFileXmlParser.cpp:138:6: warning: unused parameter 'parentItem' [-Wunused-parameter] ColorFileXmlParser.cpp:175:5: warning: unused parameter 'parentItem' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ColorParameters.o ColorParameters.cpp ColorParameters.cpp: In member function 'QColor ColorParameters::getResidueColor(QChar, QChar)': ColorParameters.cpp:160:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] ColorParameters.cpp:174:26: warning: unused variable 'temp' [-Wunused-variable] ColorParameters.cpp:157:10: warning: unused variable 'showRes' [-Wunused-variable] ColorParameters.cpp:158:10: warning: unused variable 'showCon' [-Wunused-variable] ColorParameters.cpp: In member function 'int ColorParameters::getResidueColorNum(QChar, QChar)': ColorParameters.cpp:197:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] ColorParameters.cpp:211:26: warning: unused variable 'temp' [-Wunused-variable] ColorParameters.cpp:194:10: warning: unused variable 'showRes' [-Wunused-variable] ColorParameters.cpp:195:10: warning: unused variable 'showCon' [-Wunused-variable] ColorParameters.cpp: In member function 'void ColorParameters::printColorInfo()': ColorParameters.cpp:229:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] ColorParameters.cpp: In member function 'int ColorParameters::getIndexOfColor(QColor)': ColorParameters.cpp:238:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] ColorParameters.cpp: In member function 'QColor ColorParameters::getColorFromNum(int)': ColorParameters.cpp:251:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ColumnScoreParams.o ColumnScoreParams.cpp ColumnScoreParams.cpp:51:6: warning: unused parameter 'event' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FileDialog.o FileDialog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o HardCodedColorScheme.o HardCodedColorScheme.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o HelpDisplayWidget.o HelpDisplayWidget.cpp HelpDisplayWidget.cpp: In member function 'std::string* HelpDisplayWidget::loadHelpInformation(char)': HelpDisplayWidget.cpp:61:13: warning: variable 'number' set but not used [-Wunused-but-set-variable] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o HistogramWidget.o HistogramWidget.cpp HistogramWidget.cpp: In member function 'void HistogramWidget::drawContents(QPainter*, int, int, int, int)': HistogramWidget.cpp:180:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] HistogramWidget.cpp:198:61: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o KeyController.o KeyController.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o LowScoringSegParams.o LowScoringSegParams.cpp LowScoringSegParams.cpp:51:6: warning: unused parameter 'event' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o main.o main.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o mainwindow.o mainwindow.cpp mainwindow.cpp:198:6: warning: unused parameter 'event' [-Wunused-parameter] mainwindow.cpp:1454:6: warning: unused parameter 'type' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PairwiseParams.o PairwiseParams.cpp PairwiseParams.cpp:74:6: warning: unused parameter 'event' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PostscriptFileParams.o PostscriptFileParams.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProteinGapParameters.o ProteinGapParameters.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PSPrinter.o PSPrinter.cpp PSPrinter.cpp: In member function 'void PSPrinter::writePSFile(PostscriptFileParams*)': PSPrinter.cpp:207:67: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] PSPrinter.cpp:307:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] PSPrinter.cpp:421:69: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] PSPrinter.cpp:55:9: warning: unused variable 'err' [-Wunused-variable] PSPrinter.cpp:73:9: warning: unused variable 'gapPos1' [-Wunused-variable] PSPrinter.cpp:74:9: warning: unused variable 'gapPos2' [-Wunused-variable] PSPrinter.cpp: In member function 'void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)': PSPrinter.cpp:587:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] PSPrinter.cpp: In member function 'void PSPrinter::printFooterLine(std::ofstream*, int, int)': PSPrinter.cpp:730:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] PSPrinter.cpp: In member function 'void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)': PSPrinter.cpp:789:58: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] PSPrinter.cpp:781:14: warning: unused variable 'psY' [-Wunused-variable] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o QTUtility.o QTUtility.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Resources.o Resources.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SaveSeqFile.o SaveSeqFile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SearchForString.o SearchForString.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SecStructOptions.o SecStructOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SeqNameWidget.o SeqNameWidget.cpp SeqNameWidget.cpp: In member function 'virtual void SeqNameWidget::paintEvent(QPaintEvent*)': SeqNameWidget.cpp:375:11: warning: variable 'redrawRect' set but not used [-Wunused-but-set-variable] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o TreeFormatOptions.o TreeFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o TreeOutputFileNames.o TreeOutputFileNames.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o WritePostscriptFile.o WritePostscriptFile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Clustal.o clustalW/Clustal.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Help.o clustalW/Help.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Alignment.o clustalW/alignment/Alignment.cpp clustalW/alignment/Alignment.cpp: In member function 'bool clustalw::Alignment::keepPortionOfSeqArray(int, int)': clustalW/alignment/Alignment.cpp:1715:24: warning: variable 'posToAddTo' set but not used [-Wunused-but-set-variable] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Sequence.o clustalW/alignment/Sequence.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FileParser.o clustalW/fileInput/FileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FileReader.o clustalW/fileInput/FileReader.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o InFileStream.o clustalW/fileInput/InFileStream.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp clustalW/fileInput/MSFFileParser.cpp:34:22: warning: unused parameter 'offendingSeq' [-Wunused-parameter] clustalW/fileInput/MSFFileParser.cpp:246:6: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] clustalW/fileInput/MSFFileParser.cpp:246:6: warning: unused parameter 'secStructMask' [-Wunused-parameter] clustalW/fileInput/MSFFileParser.cpp:246:6: warning: unused parameter 'secStructName' [-Wunused-parameter] clustalW/fileInput/MSFFileParser.cpp:246:6: warning: unused parameter 'length' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp:199:14: warning: unused parameter 'offendingSeq' [-Wunused-parameter] clustalW/fileInput/PearsonFileParser.cpp:444:6: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] clustalW/fileInput/PearsonFileParser.cpp:444:6: warning: unused parameter 'secStructMask' [-Wunused-parameter] clustalW/fileInput/PearsonFileParser.cpp:444:6: warning: unused parameter 'secStructName' [-Wunused-parameter] clustalW/fileInput/PearsonFileParser.cpp:444:6: warning: unused parameter 'length' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PIRFileParser.cpp:292:6: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] clustalW/fileInput/PIRFileParser.cpp:292:6: warning: unused parameter 'secStructMask' [-Wunused-parameter] clustalW/fileInput/PIRFileParser.cpp:292:6: warning: unused parameter 'secStructName' [-Wunused-parameter] clustalW/fileInput/PIRFileParser.cpp:292:6: warning: unused parameter 'length' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/RSFFileParser.cpp:240:6: warning: unused parameter 'gapPenaltyMask' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/general/ClustalWResources.cpp: In member function 'std::string clustalw::ClustalWResources::findFile(std::string, clustalw::ClustalWResourcePathType) const': clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript is above array bounds [-Warray-bounds] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o DebugLog.o clustalW/general/DebugLog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o OutputFile.o clustalW/general/OutputFile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Stats.o clustalW/general/Stats.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SymMatrix.o clustalW/general/SymMatrix.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o UserParameters.o clustalW/general/UserParameters.cpp clustalW/general/UserParameters.cpp:33:1: warning: unused parameter 'log' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Utility.o clustalW/general/Utility.cpp clustalW/general/Utility.cpp: In member function 'bool clustalw::Utility::lineType(char*, const char*)': clustalW/general/Utility.cpp:251:8: warning: variable 'n' set but not used [-Wunused-but-set-variable] clustalW/general/Utility.cpp: At global scope: clustalW/general/Utility.cpp:519:6: warning: unused parameter 'ptrToLabelObj' [-Wunused-parameter] clustalW/general/Utility.cpp: In member function 'int clustalw::Utility::getInt(const char*, int, int, int)': clustalW/general/Utility.cpp:221:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] clustalW/general/Utility.cpp: In member function 'double clustalw::Utility::getReal(const char*, double, double, double)': clustalW/general/Utility.cpp:183:36: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp clustalW/interface/InteractiveMenu.cpp: In member function 'void clustalw::InteractiveMenu::doSystem()': clustalW/interface/InteractiveMenu.cpp:1190:29: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Iteration.o clustalW/multipleAlign/Iteration.cpp clustalW/multipleAlign/Iteration.cpp: In member function 'bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable 'count' set but not used [-Wunused-but-set-variable] clustalW/multipleAlign/Iteration.cpp:231:32: warning: ignoring return value of 'char* tmpnam(char*)', declared with attribute warn_unused_result [-Wunused-result] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o MSA.o clustalW/multipleAlign/MSA.cpp clustalW/multipleAlign/MSA.cpp: In member function 'int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)': clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable 'alignmentScore' [-Wunused-variable] clustalW/multipleAlign/MSA.cpp: At global scope: clustalW/multipleAlign/MSA.cpp:358:5: warning: unused parameter 'phylipName' [-Wunused-parameter] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp clustalW/multipleAlign/ProfileBase.cpp: In member function 'void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)': clustalW/multipleAlign/ProfileBase.cpp:372:27: warning: comparison is always false due to limited range of data type [-Wtype-limits] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp clustalW/substitutionMatrix/SubMatrix.cpp:1613:6: warning: unused parameter 'alignResidueType' [-Wunused-parameter] clustalW/substitutionMatrix/SubMatrix.cpp:1613:6: warning: unused parameter 'alignType' [-Wunused-parameter] clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])': clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable 'maxRes' set but not used [-Wunused-but-set-variable] clustalW/substitutionMatrix/SubMatrix.cpp: In member function 'int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)': clustalW/substitutionMatrix/SubMatrix.cpp:998:9: warning: 'n' may be used uninitialized in this function [-Wuninitialized] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClusterTree.o clustalW/tree/ClusterTree.cpp clustalW/tree/ClusterTree.cpp: In member function 'void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)': clustalW/tree/ClusterTree.cpp:580:9: warning: variable 'rs' set but not used [-Wunused-but-set-variable] clustalW/tree/ClusterTree.cpp:580:17: warning: variable 'rl' set but not used [-Wunused-but-set-variable] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp clustalW/tree/../alignment/../general/SymMatrix.h: In member function 'void clustalw::ClusterTreeOutput::printPhylipTree(clustalw::PhyloTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*, std::vector*)': clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] clustalW/tree/../alignment/../general/SymMatrix.h: In member function 'void clustalw::ClusterTreeOutput::printNexusTree(clustalw::PhyloTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*, std::vector*)': clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o NJTree.o clustalW/tree/NJTree.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Tree.o clustalW/tree/Tree.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o TreeInterface.o clustalW/tree/TreeInterface.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp clustalW/tree/../alignment/../general/SymMatrix.h: In member function 'void clustalw::UnRootedClusterTree::treeFromDistMatrix(clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)': clustalW/tree/../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o Node.o clustalW/tree/UPGMA/Node.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function 'std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::string&)': clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function 'void clustalw::RootedTreeOutput::printPhylipTree(clustalw::RootedGuideTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*)': clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h: In member function 'void clustalw::RootedTreeOutput::printNexusTree(clustalw::RootedGuideTree*, std::ofstream*, clustalw::Alignment*, clustalw::DistMatrix*)': clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] clustalW/tree/UPGMA/../../alignment/../general/SymMatrix.h:183:13: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false [-Wstrict-overflow] g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentParameters.h -o moc_AlignmentParameters.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignmentWidget.h -o moc_AlignmentWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. ColumnScoreParams.h -o moc_ColumnScoreParams.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. FileDialog.h -o moc_FileDialog.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_FileDialog.o moc_FileDialog.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. HistogramWidget.h -o moc_HistogramWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_HistogramWidget.o moc_HistogramWidget.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. LowScoringSegParams.h -o moc_LowScoringSegParams.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. mainwindow.h -o moc_mainwindow.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_mainwindow.o moc_mainwindow.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. PairwiseParams.h -o moc_PairwiseParams.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_PairwiseParams.o moc_PairwiseParams.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. ProteinGapParameters.h -o moc_ProteinGapParameters.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. PSPrinter.h -o moc_PSPrinter.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_PSPrinter.o moc_PSPrinter.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SaveSeqFile.h -o moc_SaveSeqFile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SearchForString.h -o moc_SearchForString.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SearchForString.o moc_SearchForString.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SecStructOptions.h -o moc_SecStructOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SecStructOptions.o moc_SecStructOptions.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. SeqNameWidget.h -o moc_SeqNameWidget.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. TreeFormatOptions.h -o moc_TreeFormatOptions.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp /usr/bin/moc-qt4 -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. WritePostscriptFile.h -o moc_WritePostscriptFile.cpp g++ -c -pipe -O2 -Wall -W -D_REENTRANT -DOS_UNIX -DQT_NO_DEBUG -DQT_XML_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/share/qt4/mkspecs/linux-g++ -I. -I/usr/include/qt4/QtCore -I/usr/include/qt4/QtGui -I/usr/include/qt4/QtXml -I/usr/include/qt4 -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -I. -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp g++ -Wl,-O1 -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o -L/usr/lib/arm-linux-gnueabi -lQtXml -lQtGui -lQtCore -lpthread make[1]: Leaving directory `/build/buildd/clustalx-2.1+lgpl' dh_auto_test /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/clustalx-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory `/build/buildd/clustalx-2.1+lgpl' dh_installexamples -a dh_installman -a dh_installcatalogs -a dh_installcron -a dh_installdebconf -a dh_installemacsen -a dh_installifupdown -a dh_installinfo -a dh_installinit -a dh_installmenu -a dh_installmime -a dh_installmodules -a dh_installlogcheck -a dh_installlogrotate -a dh_installpam -a dh_installppp -a dh_installudev -a dh_installwm -a dh_installxfonts -a dh_installgsettings -a dh_bugfiles -a dh_ucf -a dh_lintian -a dh_gconf -a dh_icons -a dh_perl -a dh_usrlocal -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: clustalx dh_strip debug symbol extraction: packages to act on: clustalx dh_strip debug symbol extraction: ignored packages: clustalx is already stripped, ignoring dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/clustalx/usr/bin/clustalx contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1@GCC_3.5: it's probably a plugin. dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 106 pkgstriptranslations: processing clustalx (in debian/clustalx); do_strip: , oemstrip: debian/clustalx/usr/share/applications/clustalx.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalx/DEBIAN/control, package clustalx, directory debian/clustalx .. removing usr/share/doc/clustalx/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalx/changelog.Debian.gz to topmost ten records dpkg-deb: warning: 'debian/clustalx/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `clustalx' in `../clustalx_2.1+lgpl-2_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../clustalx_2.1+lgpl-2_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build clustalx-2.1+lgpl dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111127-1654 chroot-autobuild/build/buildd/clustalx_2.1+lgpl-2_armel.deb: new debian package, version 2.0. size 479752 bytes: control archive= 1671 bytes. 1585 bytes, 28 lines control 862 bytes, 13 lines md5sums 551 bytes, 17 lines * postinst #!/bin/sh 467 bytes, 13 lines * postrm #!/bin/sh Package: clustalx Version: 2.1+lgpl-2 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 942 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libqt4-xml (>= 4:4.5.3), libqtcore4 (>= 4:4.6.1), libqtgui4 (>= 4:4.5.3), libstdc++6 (>= 4.6) Suggests: clustalw, texshade | texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. chroot-autobuild/build/buildd/clustalx_2.1+lgpl-2_armel.deb: drwxr-xr-x root/root 0 2011-11-27 16:52 ./ drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/ drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/bin/ -rwxr-xr-x root/root 804836 2011-11-27 16:52 ./usr/bin/clustalx drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/ drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/applications/ -rw-r--r-- root/root 873 2011-11-16 05:48 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-11-27 16:54 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 1794 2011-11-16 05:48 ./usr/share/doc/clustalx/copyright -rw-r--r-- root/root 2617 2011-11-27 16:54 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 410 2011-11-16 05:48 ./usr/share/doc/clustalx/README.Debian drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/man/ drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2011-11-27 16:52 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/mime/ drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2011-11-16 05:48 ./usr/share/mime/packages/clustalx.xml drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/share/menu/ -rw-r--r-- root/root 163 2011-11-16 05:48 ./usr/share/menu/clustalx drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/lib/ drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/lib/mime/ drwxr-xr-x root/root 0 2011-11-27 16:52 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2011-11-16 05:48 ./usr/lib/mime/packages/clustalx clustalx_2.1+lgpl-2_armel.changes: Format: 1.8 Date: Wed, 16 Nov 2011 14:37:03 +0900 Source: clustalx Binary: clustalx Architecture: armel Version: 2.1+lgpl-2 Distribution: precise Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Charles Plessy Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Closes: 648812 Changes: clustalx (2.1+lgpl-2) unstable; urgency=low . [8b9662e] Update providing upgrade path to backports (Closes: #648812). [727f540] Corrected and normalised copyright file with config-edit. [fa455a0] Conforms to Policy version 3.9.2 (no changes needed). [9cd039b] Updated Homepage. [a36daf1] Rely on dpkg-dev for patching and removed build-dependancy on quilt. [51bde59] Support build-arch and build-indep targets through dh. [c3b9f16] Signal and configure the use of git-buildpackage. Checksums-Sha1: ad226659a2a6d25786e6f203ab9ba5284c82f56e 479752 clustalx_2.1+lgpl-2_armel.deb Checksums-Sha256: f7ab1fc161009db208ff85054f6991016e5ad5a2c4a35357a776db68befa9348 479752 clustalx_2.1+lgpl-2_armel.deb Files: 2533ab524ce23d2cbcef24d86184348d 479752 science optional clustalx_2.1+lgpl-2_armel.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/clustalx-2.1+lgpl ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file libqt4-sql libqt4-help fontconfig libqtgui4 x11-common libqt4-qt3support libx11-dev libcroco3 libxi6 libwayland0 libgettextpo0 libfreetype6 libxcb1 x11proto-input-dev html2text libqtcore4 debhelper libfontconfig1 libpthread-stubs0 libqt4-xmlpatterns libqt4-script libmagic1 libtiff4 libexpat1 qt4-qmake bsdmainutils libxau6 libx11-xcb1 libx11-6 xtrans-dev xorg-sgml-doctools x11proto-core-dev libxcb-xfixes0 libqt4-dbus libxcb1-dev libqt4-dev libxt6 libgbm1 libllvm2.9 libmng1 libxdmcp6 qt4-linguist-tools libegl1-mesa qdbus po-debconf libqt4-xml libxml2 libjpeg8 liblcms1 man-db libice6 libxcb-dri2-0 x11proto-kb-dev intltool-debian libqt4-svg libxrender1 libpthread-stubs0-dev ucf libxau-dev libqt4-declarative gettext-base libqt4-network libqt4-designer libqt4-scripttools libunistring0 libqt4-test libsm6 libpipeline1 libxext6 libaudio2 (Reading database ... 19579 files and directories currently installed.) 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Purging configuration files for libexpat1 ... Removing libx11-xcb1 ... Purging configuration files for libx11-xcb1 ... Removing libxcb-xfixes0 ... Purging configuration files for libxcb-xfixes0 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libgbm1 ... Purging configuration files for libgbm1 ... Removing libllvm2.9 ... Purging configuration files for libllvm2.9 ... Removing libqt4-network ... Purging configuration files for libqt4-network ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing libqt4-dbus ... Purging configuration files for libqt4-dbus ... Removing qdbus ... Removing libqt4-xml ... Purging configuration files for libqt4-xml ... Removing libice6 ... Purging configuration files for libice6 ... Removing ucf ... Purging configuration files for ucf ... Removing libx11-data ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libqtcore4 ... Purging configuration files for libqtcore4 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111127-1655 Build needed 00:30:59, 7412k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '3a1ca099d868b1739fc432492044145816e836a3'] Scanning for processes to kill in build /home/buildd/build-3a1ca099d868b1739fc432492044145816e836a3/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '3a1ca099d868b1739fc432492044145816e836a3'] Unmounting chroot for build 3a1ca099d868b1739fc432492044145816e836a3... none /home/buildd/build-3a1ca099d868b1739fc432492044145816e836a3/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-3a1ca099d868b1739fc432492044145816e836a3/chroot-autobuild/dev/pts devpts rw,relatime,mode=600,ptmxmode=000 0 0 none /home/buildd/build-3a1ca099d868b1739fc432492044145816e836a3/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-3a1ca099d868b1739fc432492044145816e836a3/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '3a1ca099d868b1739fc432492044145816e836a3'] Removing build 3a1ca099d868b1739fc432492044145816e836a3