RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-55 3.13.0-91-generic #138-Ubuntu SMP Fri Jun 24 17:00:34 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_139 python-lpbuildd_139 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa8 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.5 git-build-recipe_0.3~git201603101733.90b6821~ubuntu14.04.2 git_1:1.9.1-1ubuntu0.3 dpkg-dev_1.17.5ubuntu5.7 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1 qemu-user-static_2.0.0+dfsg-2ubuntu1.24. Syncing the system clock with the buildd NTP service... 4 Jul 17:21:13 ntpdate[1674]: adjust time server 10.211.37.1 offset 0.000731 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-10316924', '/home/buildd/filecache-default/9af1b65e710cc0b334e8c9a330a1d817d2c021bb'] Unpacking chroot for build PACKAGEBUILD-10316924 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-10316924'] Mounting chroot for build PACKAGEBUILD-10316924 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-10316924', 'deb http://ftpmaster.internal/ubuntu yakkety main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-security main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-updates main universe', 'deb http://ftpmaster.internal/ubuntu yakkety-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-10316924 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-10316924', 'i386'] Updating debian chroot for build PACKAGEBUILD-10316924 Get:1 http://ftpmaster.internal/ubuntu yakkety InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety-updates InRelease [92.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety-proposed InRelease [95.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 Packages [1194 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main Translation-en [565 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/universe i386 Packages [7787 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/universe Translation-en [4475 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety-security/main i386 Packages [64 B] Get:10 http://ftpmaster.internal/ubuntu yakkety-security/main Translation-en [64 B] Get:11 http://ftpmaster.internal/ubuntu yakkety-security/universe i386 Packages [64 B] Get:12 http://ftpmaster.internal/ubuntu yakkety-security/universe Translation-en [64 B] Get:13 http://ftpmaster.internal/ubuntu yakkety-updates/main i386 Packages [64 B] Get:14 http://ftpmaster.internal/ubuntu yakkety-updates/main Translation-en [64 B] Get:15 http://ftpmaster.internal/ubuntu yakkety-updates/universe i386 Packages [64 B] Get:16 http://ftpmaster.internal/ubuntu yakkety-updates/universe Translation-en [64 B] Get:17 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 Packages [51.8 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety-proposed/main Translation-en [23.0 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety-proposed/universe i386 Packages [212 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety-proposed/universe Translation-en [92.6 kB] Fetched 14.9 MB in 3s (3825 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libpng16-16 libprocps5 The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils bzip2 cpp-5 debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs findutils g++-5 gcc-5 gcc-5-base gcc-6-base grep hostname init init-system-helpers insserv libapt-pkg5.0 libasan2 libatomic1 libblkid1 libbz2-1.0 libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcryptsetup4 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgdbm3 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libisl15 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libldap-2.4-2 liblzma5 libmount1 libmpfr4 libmpx0 libncurses5 libncursesw5 libperl5.22 libpng12-0 libquadmath0 librtmp1 libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev login lsb-base make mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.22 pkgbinarymangler policyrcd-script-zg2 procps sed systemd systemd-sysv sysv-rc sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 115 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 60.8 MB of archives. After this operation, 9623 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu yakkety/main i386 base-files i386 9.6ubuntu2 [56.5 kB] Get:2 http://ftpmaster.internal/ubuntu yakkety/main i386 debianutils i386 4.8 [85.7 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main i386 bash i386 4.3-15ubuntu1 [591 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main i386 bsdutils i386 1:2.28-5ubuntu2 [57.7 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 tar i386 1.29-1 [227 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 dpkg i386 1.18.9ubuntu1 [2190 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main i386 e2fslibs i386 1.43.1-1 [179 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main i386 e2fsprogs i386 1.43.1-1 [521 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main i386 findutils i386 4.6.0+git+20160517-5 [291 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main i386 grep i386 2.25-6 [157 kB] Get:11 http://ftpmaster.internal/ubuntu yakkety/main i386 hostname i386 3.17ubuntu1 [11.9 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main i386 login i386 1:4.2-3.1ubuntu6 [308 kB] Get:13 http://ftpmaster.internal/ubuntu yakkety/main i386 libsmartcols1 i386 2.28-5ubuntu2 [70.4 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main i386 libselinux1 i386 2.5-3 [70.1 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main i386 libsepol1 i386 2.5-1 [236 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main i386 libsemanage-common all 2.5-1 [6800 B] Get:17 http://ftpmaster.internal/ubuntu yakkety/main i386 libsemanage1 i386 2.5-1 [88.3 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main i386 bzip2 i386 1.0.6-8build1 [32.5 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main i386 libbz2-1.0 i386 1.0.6-8build1 [30.9 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main i386 passwd i386 1:4.2-3.1ubuntu6 [788 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main i386 libuuid1 i386 2.28-5ubuntu2 [16.3 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main i386 libblkid1 i386 2.28-5ubuntu2 [119 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main i386 libfdisk1 i386 2.28-5ubuntu2 [153 kB] Get:24 http://ftpmaster.internal/ubuntu yakkety/main i386 perl-modules-5.22 all 5.22.2-1 [2642 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main i386 libperl5.22 i386 5.22.2-1 [3014 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main i386 perl i386 5.22.2-1 [237 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main i386 perl-base i386 5.22.2-1 [1369 kB] Get:28 http://ftpmaster.internal/ubuntu yakkety/main i386 libgdbm3 i386 1.8.3-14 [18.0 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main i386 zlib1g i386 1:1.2.8.dfsg-2ubuntu5 [52.1 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main i386 init-system-helpers all 1.36 [37.7 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main i386 util-linux i386 2.28-5ubuntu2 [904 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 sysvinit-utils i386 2.88dsf-59.7ubuntu2 [21.5 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main i386 mount i386 2.28-5ubuntu2 [129 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety/main i386 ncurses-bin i386 6.0+20160319-1ubuntu1 [139 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety/main i386 sed i386 4.2.2-7.1 [139 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main i386 init i386 1.36 [5554 B] Get:37 http://ftpmaster.internal/ubuntu yakkety/main i386 ncurses-base all 6.0+20160319-1ubuntu1 [16.7 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main i386 gcc-6-base i386 6.1.1-8ubuntu11 [17.0 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main i386 libgcc1 i386 1:6.1.1-8ubuntu11 [46.9 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main i386 liblzma5 i386 5.1.1alpha+20120614-2.1ubuntu1 [88.1 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main i386 libstdc++6 i386 6.1.1-8ubuntu11 [433 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libapt-pkg5.0 i386 1.3~exp2ubuntu1 [752 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main i386 ubuntu-keyring all 2016.05.13 [16.5 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 apt i386 1.3~exp2ubuntu1 [1044 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main i386 debconf all 1.5.59ubuntu1 [136 kB] Get:46 http://ftpmaster.internal/ubuntu yakkety/main i386 libgpg-error0 i386 1.23-1 [36.9 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main i386 libgcrypt20 i386 1.7.1-2 [372 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main i386 insserv i386 1.14.0-5.3ubuntu1 [37.8 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main i386 sysv-rc all 2.88dsf-59.7ubuntu1 [18.1 kB] Get:50 http://ftpmaster.internal/ubuntu yakkety/main i386 libcap2 i386 1:2.25-1 [13.7 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main i386 libudev1 i386 230-5 [62.8 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main i386 libdevmapper1.02.1 i386 2:1.02.127-1ubuntu1 [154 kB] Get:53 http://ftpmaster.internal/ubuntu yakkety/main i386 libcryptsetup4 i386 2:1.7.2-0ubuntu1 [83.8 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main i386 libidn11 i386 1.32-3.1 [47.0 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main i386 libkmod2 i386 22-1.1ubuntu1 [46.0 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main i386 libmount1 i386 2.28-5ubuntu2 [126 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main i386 libseccomp2 i386 2.3.1-2ubuntu2 [35.4 kB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main i386 libcap2-bin i386 1:2.25-1 [20.6 kB] Get:59 http://ftpmaster.internal/ubuntu yakkety/main i386 libsystemd0 i386 230-5 [230 kB] Get:60 http://ftpmaster.internal/ubuntu yakkety/main i386 systemd i386 230-5 [2294 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main i386 systemd-sysv i386 230-5 [17.2 kB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main i386 libcomerr2 i386 1.43.1-1 [10.2 kB] Get:63 http://ftpmaster.internal/ubuntu yakkety/main i386 libdebconfclient0 i386 0.213ubuntu1 [6130 B] Get:64 http://ftpmaster.internal/ubuntu yakkety/main i386 libncurses5 i386 6.0+20160319-1ubuntu1 [101 kB] Get:65 http://ftpmaster.internal/ubuntu yakkety/main i386 libtinfo5 i386 6.0+20160319-1ubuntu1 [77.4 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main i386 libncursesw5 i386 6.0+20160319-1ubuntu1 [125 kB] Get:67 http://ftpmaster.internal/ubuntu yakkety/main i386 libss2 i386 1.43.1-1 [11.4 kB] Get:68 http://ftpmaster.internal/ubuntu yakkety/main i386 lsb-base all 9.20160110ubuntu4 [13.5 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety/main i386 libusb-0.1-4 i386 2:0.1.12-30 [17.7 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety/main i386 libprocps5 i386 2:3.3.11-3ubuntu1 [31.3 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main i386 procps i386 2:3.3.11-3ubuntu1 [223 kB] Get:72 http://ftpmaster.internal/ubuntu yakkety/main i386 tzdata all 2016e-1 [170 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main i386 dmsetup i386 2:1.02.127-1ubuntu1 [72.8 kB] Get:74 http://ftpmaster.internal/ubuntu yakkety/main i386 libslang2 i386 2.3.0-2.3ubuntu1 [416 kB] Get:75 http://ftpmaster.internal/ubuntu yakkety/main i386 libsqlite3-0 i386 3.13.0-1 [510 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libssl1.0.0 i386 1.0.2g-1ubuntu5 [948 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 apt-transport-https i386 1.3~exp2ubuntu1 [28.3 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/main i386 libgmp10 i386 2:6.1.1+dfsg-1 [246 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/main i386 libtasn1-6 i386 4.8-1 [44.8 kB] Get:80 http://ftpmaster.internal/ubuntu yakkety/main i386 libgnutls30 i386 3.4.11-4ubuntu1 [569 kB] Get:81 http://ftpmaster.internal/ubuntu yakkety/main i386 libgssapi-krb5-2 i386 1.14.2+dfsg-1ubuntu1 [130 kB] Get:82 http://ftpmaster.internal/ubuntu yakkety/main i386 libkrb5-3 i386 1.14.2+dfsg-1ubuntu1 [299 kB] Get:83 http://ftpmaster.internal/ubuntu yakkety/main i386 libkrb5support0 i386 1.14.2+dfsg-1ubuntu1 [33.1 kB] Get:84 http://ftpmaster.internal/ubuntu yakkety/main i386 libk5crypto3 i386 1.14.2+dfsg-1ubuntu1 [83.7 kB] Get:85 http://ftpmaster.internal/ubuntu yakkety/main i386 libsasl2-modules-db i386 2.1.26.dfsg1-15 [15.4 kB] Get:86 http://ftpmaster.internal/ubuntu yakkety/main i386 libsasl2-2 i386 2.1.26.dfsg1-15 [51.8 kB] Get:87 http://ftpmaster.internal/ubuntu yakkety/main i386 libldap-2.4-2 i386 2.4.42+dfsg-2ubuntu4 [173 kB] Get:88 http://ftpmaster.internal/ubuntu yakkety/main i386 libpng16-16 i386 1.6.23-1 [182 kB] Get:89 http://ftpmaster.internal/ubuntu yakkety/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-1 [58.1 kB] Get:90 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 openssl i386 1.0.2g-1ubuntu5 [507 kB] Get:91 http://ftpmaster.internal/ubuntu yakkety/main i386 binutils i386 2.26.1-1ubuntu1 [2495 kB] Get:92 http://ftpmaster.internal/ubuntu yakkety/main i386 libquadmath0 i386 6.1.1-8ubuntu11 [204 kB] Get:93 http://ftpmaster.internal/ubuntu yakkety/main i386 libgomp1 i386 6.1.1-8ubuntu11 [80.0 kB] Get:94 http://ftpmaster.internal/ubuntu yakkety/main i386 libitm1 i386 6.1.1-8ubuntu11 [31.2 kB] Get:95 http://ftpmaster.internal/ubuntu yakkety/main i386 libatomic1 i386 6.1.1-8ubuntu11 [9912 B] Get:96 http://ftpmaster.internal/ubuntu yakkety/main i386 libasan2 i386 5.4.0-6ubuntu1 [266 kB] Get:97 http://ftpmaster.internal/ubuntu yakkety/main i386 libubsan0 i386 6.1.1-8ubuntu11 [120 kB] Get:98 http://ftpmaster.internal/ubuntu yakkety/main i386 libcilkrts5 i386 6.1.1-8ubuntu11 [45.8 kB] Get:99 http://ftpmaster.internal/ubuntu yakkety/main i386 libmpx0 i386 5.4.0-6ubuntu1 [11.1 kB] Get:100 http://ftpmaster.internal/ubuntu yakkety/main i386 g++-5 i386 5.4.0-6ubuntu1 [8357 kB] Get:101 http://ftpmaster.internal/ubuntu yakkety/main i386 gcc-5 i386 5.4.0-6ubuntu1 [8469 kB] Get:102 http://ftpmaster.internal/ubuntu yakkety/main i386 libstdc++-5-dev i386 5.4.0-6ubuntu1 [1452 kB] Get:103 http://ftpmaster.internal/ubuntu yakkety/main i386 libgcc-5-dev i386 5.4.0-6ubuntu1 [2232 kB] Get:104 http://ftpmaster.internal/ubuntu yakkety/main i386 libcc1-0 i386 6.1.1-8ubuntu11 [32.9 kB] Get:105 http://ftpmaster.internal/ubuntu yakkety/main i386 cpp-5 i386 5.4.0-6ubuntu1 [7711 kB] Get:106 http://ftpmaster.internal/ubuntu yakkety/main i386 gcc-5-base i386 5.4.0-6ubuntu1 [16.6 kB] Get:107 http://ftpmaster.internal/ubuntu yakkety/main i386 libisl15 i386 0.17.1-1 [618 kB] Get:108 http://ftpmaster.internal/ubuntu yakkety/main i386 libmpfr4 i386 3.1.4-2 [194 kB] Get:109 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 dpkg-dev all 1.18.9ubuntu1 [641 kB] Get:110 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 libdpkg-perl all 1.18.9ubuntu1 [203 kB] Get:111 http://ftpmaster.internal/ubuntu yakkety/main i386 xz-utils i386 5.1.1alpha+20120614-2.1ubuntu1 [82.6 kB] Get:112 http://ftpmaster.internal/ubuntu yakkety/main i386 make i386 4.1-9 [154 kB] Get:113 http://ftpmaster.internal/ubuntu yakkety/universe i386 libpng12-0 i386 1.2.54-6ubuntu1 [122 kB] Get:114 http://ftpmaster.internal/ubuntu yakkety/main i386 linux-libc-dev i386 4.4.0-30.49 [836 kB] Get:115 http://ftpmaster.internal/ubuntu yakkety/main i386 optipng i386 0.7.6-1build1 [86.3 kB] Get:116 http://ftpmaster.internal/ubuntu yakkety/main i386 pkgbinarymangler all 130 [43.2 kB] Get:117 http://ftpmaster.internal/ubuntu yakkety/main i386 policyrcd-script-zg2 all 0.1-3 [5610 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 60.8 MB in 5s (10.7 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu2_i386.deb ... Unpacking base-files (9.6ubuntu2) over (9.6ubuntu1) ... Setting up base-files (9.6ubuntu2) ... Installing new version of config file /etc/update-motd.d/10-help-text ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../debianutils_4.8_i386.deb ... Unpacking debianutils (4.8) over (4.7) ... Setting up debianutils (4.8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../bash_4.3-15ubuntu1_i386.deb ... Unpacking bash (4.3-15ubuntu1) over (4.3-14ubuntu1) ... Setting up bash (4.3-15ubuntu1) ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.28-5ubuntu2_i386.deb ... Unpacking bsdutils (1:2.28-5ubuntu2) over (1:2.27.1-6ubuntu3) ... Setting up bsdutils (1:2.28-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../archives/tar_1.29-1_i386.deb ... Unpacking tar (1.29-1) over (1.28-2.1) ... Setting up tar (1.29-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12148 files and directories currently installed.) Preparing to unpack .../dpkg_1.18.9ubuntu1_i386.deb ... Unpacking dpkg (1.18.9ubuntu1) over (1.18.4ubuntu1) ... Setting up dpkg (1.18.9ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12158 files and directories currently installed.) Preparing to unpack .../e2fslibs_1.43.1-1_i386.deb ... Unpacking e2fslibs:i386 (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up e2fslibs:i386 (1.43.1-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12158 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.43.1-1_i386.deb ... Unpacking e2fsprogs (1.43.1-1) over (1.42.13-1ubuntu1) ... Setting up e2fsprogs (1.43.1-1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20160517-5_i386.deb ... Unpacking findutils (4.6.0+git+20160517-5) over (4.6.0+git+20160126-2) ... Setting up findutils (4.6.0+git+20160517-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../archives/grep_2.25-6_i386.deb ... Unpacking grep (2.25-6) over (2.24-1) ... Setting up grep (2.25-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../hostname_3.17ubuntu1_i386.deb ... Unpacking hostname (3.17ubuntu1) over (3.16ubuntu2) ... Setting up hostname (3.17ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../login_1%3a4.2-3.1ubuntu6_i386.deb ... Unpacking login (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up login (1:4.2-3.1ubuntu6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.28-5ubuntu2_i386.deb ... Unpacking libsmartcols1:i386 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsmartcols1:i386 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libselinux1_2.5-3_i386.deb ... Unpacking libselinux1:i386 (2.5-3) over (2.4-3build2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libselinux1:i386 (2.5-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libsepol1_2.5-1_i386.deb ... Unpacking libsepol1:i386 (2.5-1) over (2.4-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsepol1:i386 (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.5-1_all.deb ... Unpacking libsemanage-common (2.5-1) over (2.3-1build3) ... Setting up libsemanage-common (2.5-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.5-1_i386.deb ... Unpacking libsemanage1:i386 (2.5-1) over (2.3-1build3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsemanage1:i386 (2.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.6-8build1_i386.deb ... Unpacking bzip2 (1.0.6-8build1) over (1.0.6-8) ... Preparing to unpack .../libbz2-1.0_1.0.6-8build1_i386.deb ... Unpacking libbz2-1.0:i386 (1.0.6-8build1) over (1.0.6-8) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libbz2-1.0:i386 (1.0.6-8build1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.2-3.1ubuntu6_i386.deb ... Unpacking passwd (1:4.2-3.1ubuntu6) over (1:4.2-3.1ubuntu5) ... Setting up passwd (1:4.2-3.1ubuntu6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libuuid1_2.28-5ubuntu2_i386.deb ... Unpacking libuuid1:i386 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libuuid1:i386 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libblkid1_2.28-5ubuntu2_i386.deb ... Unpacking libblkid1:i386 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libblkid1:i386 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.28-5ubuntu2_i386.deb ... Unpacking libfdisk1:i386 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libfdisk1:i386 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../perl_5.22.2-1_i386.deb ... Unpacking perl (5.22.2-1) over (5.22.1-9) ... Preparing to unpack .../perl-modules-5.22_5.22.2-1_all.deb ... Unpacking perl-modules-5.22 (5.22.2-1) over (5.22.1-9) ... Preparing to unpack .../libperl5.22_5.22.2-1_i386.deb ... Unpacking libperl5.22:i386 (5.22.2-1) over (5.22.1-9) ... Preparing to unpack .../perl-base_5.22.2-1_i386.deb ... Unpacking perl-base (5.22.2-1) over (5.22.1-9) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up perl-base (5.22.2-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../libgdbm3_1.8.3-14_i386.deb ... Unpacking libgdbm3:i386 (1.8.3-14) over (1.8.3-13.1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-2ubuntu5_i386.deb ... Unpacking zlib1g:i386 (1:1.2.8.dfsg-2ubuntu5) over (1:1.2.8.dfsg-2ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up zlib1g:i386 (1:1.2.8.dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12144 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.36_all.deb ... Unpacking init-system-helpers (1.36) over (1.29ubuntu1) ... Setting up init-system-helpers (1.36) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12146 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.88dsf-59.7ubuntu2_i386.deb ... Unpacking sysvinit-utils (2.88dsf-59.7ubuntu2) over (2.88dsf-59.3ubuntu2) ... Replacing files in old package initscripts (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../util-linux_2.28-5ubuntu2_i386.deb ... Unpacking util-linux (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up util-linux (2.28-5ubuntu2) ... Processing triggers for systemd (229-4ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12151 files and directories currently installed.) Preparing to unpack .../mount_2.28-5ubuntu2_i386.deb ... Unpacking mount (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Setting up mount (2.28-5ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.0+20160319-1ubuntu1_i386.deb ... Unpacking ncurses-bin (6.0+20160319-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-bin (6.0+20160319-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../sed_4.2.2-7.1_i386.deb ... Unpacking sed (4.2.2-7.1) over (4.2.2-7) ... Setting up sed (4.2.2-7.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../archives/init_1.36_i386.deb ... Unpacking init (1.36) over (1.29ubuntu1) ... Setting up init (1.36) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.0+20160319-1ubuntu1_all.deb ... Unpacking ncurses-base (6.0+20160319-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Setting up ncurses-base (6.0+20160319-1ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../gcc-6-base_6.1.1-8ubuntu11_i386.deb ... Unpacking gcc-6-base:i386 (6.1.1-8ubuntu11) over (6.0.1-0ubuntu1) ... Setting up gcc-6-base:i386 (6.1.1-8ubuntu11) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.1.1-8ubuntu11_i386.deb ... Unpacking libgcc1:i386 (1:6.1.1-8ubuntu11) over (1:6.0.1-0ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcc1:i386 (1:6.1.1-8ubuntu11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../liblzma5_5.1.1alpha+20120614-2.1ubuntu1_i386.deb ... Unpacking liblzma5:i386 (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up liblzma5:i386 (5.1.1alpha+20120614-2.1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../libstdc++6_6.1.1-8ubuntu11_i386.deb ... Unpacking libstdc++6:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libstdc++6:i386 (6.1.1-8ubuntu11) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.3~exp2ubuntu1_i386.deb ... Unpacking libapt-pkg5.0:i386 (1.3~exp2ubuntu1) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libapt-pkg5.0:i386 (1.3~exp2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.05.13_all.deb ... Unpacking ubuntu-keyring (2016.05.13) over (2012.05.19) ... Setting up ubuntu-keyring (2016.05.13) ... gpg: key 437D05B5: "Ubuntu Archive Automatic Signing Key " not changed gpg: key FBB75451: "Ubuntu CD Image Automatic Signing Key " not changed gpg: key C0B21F32: "Ubuntu Archive Automatic Signing Key (2012) " not changed gpg: key EFE21092: "Ubuntu CD Image Automatic Signing Key (2012) " not changed gpg: Total number processed: 4 gpg: unchanged: 4 (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../apt_1.3~exp2ubuntu1_i386.deb ... Unpacking apt (1.3~exp2ubuntu1) over (1.2.10ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up apt (1.3~exp2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../debconf_1.5.59ubuntu1_all.deb ... Unpacking debconf (1.5.59ubuntu1) over (1.5.58ubuntu1) ... Setting up debconf (1.5.59ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.23-1_i386.deb ... Unpacking libgpg-error0:i386 (1.23-1) over (1.21-2ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgpg-error0:i386 (1.23-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.1-2_i386.deb ... Unpacking libgcrypt20:i386 (1.7.1-2) over (1.6.5-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libgcrypt20:i386 (1.7.1-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12154 files and directories currently installed.) Preparing to unpack .../insserv_1.14.0-5.3ubuntu1_i386.deb ... Unpacking insserv (1.14.0-5.3ubuntu1) over (1.14.0-5ubuntu3) ... Preparing to unpack .../sysv-rc_2.88dsf-59.7ubuntu1_all.deb ... Unpacking sysv-rc (2.88dsf-59.7ubuntu1) over (2.88dsf-59.3ubuntu2) ... Preparing to unpack .../libcap2_1%3a2.25-1_i386.deb ... Unpacking libcap2:i386 (1:2.25-1) over (1:2.24-12) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libcap2:i386 (1:2.25-1) ... Processing triggers for systemd (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libudev1_230-5_i386.deb ... Unpacking libudev1:i386 (230-5) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libudev1:i386 (230-5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.127-1ubuntu1_i386.deb ... Unpacking libdevmapper1.02.1:i386 (2:1.02.127-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdevmapper1.02.1:i386 (2:1.02.127-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.7.2-0ubuntu1_i386.deb ... Unpacking libcryptsetup4:i386 (2:1.7.2-0ubuntu1) over (2:1.6.6-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libcryptsetup4:i386 (2:1.7.2-0ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libidn11_1.32-3.1_i386.deb ... Unpacking libidn11:i386 (1.32-3.1) over (1.32-3ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libidn11:i386 (1.32-3.1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libkmod2_22-1.1ubuntu1_i386.deb ... Unpacking libkmod2:i386 (22-1.1ubuntu1) over (22-1ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libkmod2:i386 (22-1.1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libmount1_2.28-5ubuntu2_i386.deb ... Unpacking libmount1:i386 (2.28-5ubuntu2) over (2.27.1-6ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libmount1:i386 (2.28-5ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.3.1-2ubuntu2_i386.deb ... Unpacking libseccomp2:i386 (2.3.1-2ubuntu2) over (2.2.3-3ubuntu3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libseccomp2:i386 (2.3.1-2ubuntu2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12155 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.25-1_i386.deb ... Unpacking libcap2-bin (1:2.25-1) over (1:2.24-12) ... Setting up libcap2-bin (1:2.25-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12156 files and directories currently installed.) Preparing to unpack .../libsystemd0_230-5_i386.deb ... Unpacking libsystemd0:i386 (230-5) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libsystemd0:i386 (230-5) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12156 files and directories currently installed.) Preparing to unpack .../systemd_230-5_i386.deb ... Unpacking systemd (230-5) over (229-4ubuntu4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up systemd (230-5) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/pam.d/systemd-user ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/systemd/bootchart.conf ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../systemd-sysv_230-5_i386.deb ... Unpacking systemd-sysv (230-5) over (229-4ubuntu4) ... Setting up systemd-sysv (230-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../libcomerr2_1.43.1-1_i386.deb ... Unpacking libcomerr2:i386 (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libcomerr2:i386 (1.43.1-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.213ubuntu1_i386.deb ... Unpacking libdebconfclient0:i386 (0.213ubuntu1) over (0.198ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libdebconfclient0:i386 (0.213ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../libncurses5_6.0+20160319-1ubuntu1_i386.deb ... Unpacking libncurses5:i386 (6.0+20160319-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.0+20160319-1ubuntu1_i386.deb ... Unpacking libtinfo5:i386 (6.0+20160319-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libtinfo5:i386 (6.0+20160319-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../libncursesw5_6.0+20160319-1ubuntu1_i386.deb ... Unpacking libncursesw5:i386 (6.0+20160319-1ubuntu1) over (6.0+20160213-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libncursesw5:i386 (6.0+20160319-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../libss2_1.43.1-1_i386.deb ... Unpacking libss2:i386 (1.43.1-1) over (1.42.13-1ubuntu1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libss2:i386 (1.43.1-1) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../lsb-base_9.20160110ubuntu4_all.deb ... Unpacking lsb-base (9.20160110ubuntu4) over (9.20160110) ... Setting up lsb-base (9.20160110ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../libusb-0.1-4_2%3a0.1.12-30_i386.deb ... Unpacking libusb-0.1-4:i386 (2:0.1.12-30) over (2:0.1.12-28) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libusb-0.1-4:i386 (2:0.1.12-30) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Selecting previously unselected package libprocps5:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12143 files and directories currently installed.) Preparing to unpack .../libprocps5_2%3a3.3.11-3ubuntu1_i386.deb ... Unpacking libprocps5:i386 (2:3.3.11-3ubuntu1) ... Preparing to unpack .../procps_2%3a3.3.11-3ubuntu1_i386.deb ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of stop. Unpacking procps (2:3.3.11-3ubuntu1) over (2:3.3.10-4ubuntu2) ... Preparing to unpack .../tzdata_2016e-1_all.deb ... Unpacking tzdata (2016e-1) over (2016d-0ubuntu0.16.04) ... Preparing to unpack .../dmsetup_2%3a1.02.127-1ubuntu1_i386.deb ... Unpacking dmsetup (2:1.02.127-1ubuntu1) over (2:1.02.110-1ubuntu10) ... Preparing to unpack .../libslang2_2.3.0-2.3ubuntu1_i386.deb ... Unpacking libslang2:i386 (2.3.0-2.3ubuntu1) over (2.3.0-2ubuntu1) ... Preparing to unpack .../libsqlite3-0_3.13.0-1_i386.deb ... Unpacking libsqlite3-0:i386 (3.13.0-1) over (3.11.0-1ubuntu1) ... Preparing to unpack .../libssl1.0.0_1.0.2g-1ubuntu5_i386.deb ... Unpacking libssl1.0.0:i386 (1.0.2g-1ubuntu5) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../apt-transport-https_1.3~exp2ubuntu1_i386.deb ... Unpacking apt-transport-https (1.3~exp2ubuntu1) over (1.2.10ubuntu1) ... Preparing to unpack .../libgmp10_2%3a6.1.1+dfsg-1_i386.deb ... Unpacking libgmp10:i386 (2:6.1.1+dfsg-1) over (2:6.1.0+dfsg-2) ... Preparing to unpack .../libtasn1-6_4.8-1_i386.deb ... Unpacking libtasn1-6:i386 (4.8-1) over (4.7-3) ... Preparing to unpack .../libgnutls30_3.4.11-4ubuntu1_i386.deb ... Unpacking libgnutls30:i386 (3.4.11-4ubuntu1) over (3.4.10-4ubuntu1) ... Preparing to unpack .../libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5-3_1.14.2+dfsg-1ubuntu1_i386.deb ... Unpacking libkrb5-3:i386 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libkrb5support0_1.14.2+dfsg-1ubuntu1_i386.deb ... Unpacking libkrb5support0:i386 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libk5crypto3_1.14.2+dfsg-1ubuntu1_i386.deb ... Unpacking libk5crypto3:i386 (1.14.2+dfsg-1ubuntu1) over (1.13.2+dfsg-5) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-15_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-15_i386.deb ... Unpacking libsasl2-2:i386 (2.1.26.dfsg1-15) over (2.1.26.dfsg1-14build1) ... Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu4_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.42+dfsg-2ubuntu4) over (2.4.42+dfsg-2ubuntu3) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../libpng16-16_1.6.23-1_i386.deb ... Unpacking libpng16-16:i386 (1.6.23-1) ... Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-1_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-1) over (2.4+20151223.gitfa8646d-1build1) ... Preparing to unpack .../openssl_1.0.2g-1ubuntu5_i386.deb ... Unpacking openssl (1.0.2g-1ubuntu5) over (1.0.2g-1ubuntu4) ... Preparing to unpack .../binutils_2.26.1-1ubuntu1_i386.deb ... Unpacking binutils (2.26.1-1ubuntu1) over (2.26-8ubuntu2) ... Preparing to unpack .../libquadmath0_6.1.1-8ubuntu11_i386.deb ... Unpacking libquadmath0:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgomp1_6.1.1-8ubuntu11_i386.deb ... Unpacking libgomp1:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libitm1_6.1.1-8ubuntu11_i386.deb ... Unpacking libitm1:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libatomic1_6.1.1-8ubuntu11_i386.deb ... Unpacking libatomic1:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libasan2_5.4.0-6ubuntu1_i386.deb ... Unpacking libasan2:i386 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libubsan0_6.1.1-8ubuntu11_i386.deb ... Unpacking libubsan0:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libcilkrts5_6.1.1-8ubuntu11_i386.deb ... Unpacking libcilkrts5:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libmpx0_5.4.0-6ubuntu1_i386.deb ... Unpacking libmpx0:i386 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../g++-5_5.4.0-6ubuntu1_i386.deb ... Unpacking g++-5 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5_5.4.0-6ubuntu1_i386.deb ... Unpacking gcc-5 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libstdc++-5-dev_5.4.0-6ubuntu1_i386.deb ... Unpacking libstdc++-5-dev:i386 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libgcc-5-dev_5.4.0-6ubuntu1_i386.deb ... Unpacking libgcc-5-dev:i386 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libcc1-0_6.1.1-8ubuntu11_i386.deb ... Unpacking libcc1-0:i386 (6.1.1-8ubuntu11) over (5.3.1-14ubuntu2) ... Preparing to unpack .../cpp-5_5.4.0-6ubuntu1_i386.deb ... Unpacking cpp-5 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../gcc-5-base_5.4.0-6ubuntu1_i386.deb ... Unpacking gcc-5-base:i386 (5.4.0-6ubuntu1) over (5.3.1-14ubuntu2) ... Preparing to unpack .../libisl15_0.17.1-1_i386.deb ... Unpacking libisl15:i386 (0.17.1-1) over (0.16.1-1) ... Preparing to unpack .../libmpfr4_3.1.4-2_i386.deb ... Unpacking libmpfr4:i386 (3.1.4-2) over (3.1.4-1) ... Preparing to unpack .../dpkg-dev_1.18.9ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.9ubuntu1) over (1.18.4ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.18.9ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.9ubuntu1) over (1.18.4ubuntu1) ... Preparing to unpack .../xz-utils_5.1.1alpha+20120614-2.1ubuntu1_i386.deb ... Unpacking xz-utils (5.1.1alpha+20120614-2.1ubuntu1) over (5.1.1alpha+20120614-2ubuntu2) ... Preparing to unpack .../archives/make_4.1-9_i386.deb ... Unpacking make (4.1-9) over (4.1-6) ... Preparing to unpack .../libpng12-0_1.2.54-6ubuntu1_i386.deb ... Unpacking libpng12-0:i386 (1.2.54-6ubuntu1) over (1.2.54-1ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.4.0-30.49_i386.deb ... Unpacking linux-libc-dev:i386 (4.4.0-30.49) over (4.4.0-21.37) ... Preparing to unpack .../optipng_0.7.6-1build1_i386.deb ... Unpacking optipng (0.7.6-1build1) over (0.7.6-1) ... Preparing to unpack .../pkgbinarymangler_130_all.deb ... Unpacking pkgbinarymangler (130) over (129) ... Preparing to unpack .../policyrcd-script-zg2_0.1-3_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3) over (0.1-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Processing triggers for systemd (230-5) ... Setting up bzip2 (1.0.6-8build1) ... Setting up perl-modules-5.22 (5.22.2-1) ... Setting up libgdbm3:i386 (1.8.3-14) ... Setting up libperl5.22:i386 (5.22.2-1) ... Setting up perl (5.22.2-1) ... Setting up sysvinit-utils (2.88dsf-59.7ubuntu2) ... Setting up insserv (1.14.0-5.3ubuntu1) ... Setting up sysv-rc (2.88dsf-59.7ubuntu1) ... Setting up libncurses5:i386 (6.0+20160319-1ubuntu1) ... Setting up libprocps5:i386 (2:3.3.11-3ubuntu1) ... Setting up procps (2:3.3.11-3ubuntu1) ... Installing new version of config file /etc/sysctl.conf ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up tzdata (2016e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jul 4 17:21:58 UTC 2016. Universal Time is now: Mon Jul 4 17:21:58 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up dmsetup (2:1.02.127-1ubuntu1) ... Setting up libslang2:i386 (2.3.0-2.3ubuntu1) ... Setting up libsqlite3-0:i386 (3.13.0-1) ... Setting up libssl1.0.0:i386 (1.0.2g-1ubuntu5) ... Setting up apt-transport-https (1.3~exp2ubuntu1) ... Setting up libgmp10:i386 (2:6.1.1+dfsg-1) ... Setting up libtasn1-6:i386 (4.8-1) ... Setting up libgnutls30:i386 (3.4.11-4ubuntu1) ... Setting up libkrb5support0:i386 (1.14.2+dfsg-1ubuntu1) ... Setting up libk5crypto3:i386 (1.14.2+dfsg-1ubuntu1) ... Setting up libkrb5-3:i386 (1.14.2+dfsg-1ubuntu1) ... Setting up libgssapi-krb5-2:i386 (1.14.2+dfsg-1ubuntu1) ... Setting up libsasl2-modules-db:i386 (2.1.26.dfsg1-15) ... Setting up libsasl2-2:i386 (2.1.26.dfsg1-15) ... Setting up libldap-2.4-2:i386 (2.4.42+dfsg-2ubuntu4) ... Setting up libpng16-16:i386 (1.6.23-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-1) ... Setting up openssl (1.0.2g-1ubuntu5) ... Setting up binutils (2.26.1-1ubuntu1) ... Setting up libquadmath0:i386 (6.1.1-8ubuntu11) ... Setting up libgomp1:i386 (6.1.1-8ubuntu11) ... Setting up libitm1:i386 (6.1.1-8ubuntu11) ... Setting up libatomic1:i386 (6.1.1-8ubuntu11) ... Setting up gcc-5-base:i386 (5.4.0-6ubuntu1) ... Setting up libasan2:i386 (5.4.0-6ubuntu1) ... Setting up libubsan0:i386 (6.1.1-8ubuntu11) ... Setting up libcilkrts5:i386 (6.1.1-8ubuntu11) ... Setting up libmpx0:i386 (5.4.0-6ubuntu1) ... Setting up libisl15:i386 (0.17.1-1) ... Setting up libmpfr4:i386 (3.1.4-2) ... Setting up cpp-5 (5.4.0-6ubuntu1) ... Setting up libcc1-0:i386 (6.1.1-8ubuntu11) ... Setting up libgcc-5-dev:i386 (5.4.0-6ubuntu1) ... Setting up gcc-5 (5.4.0-6ubuntu1) ... Setting up libstdc++-5-dev:i386 (5.4.0-6ubuntu1) ... Setting up g++-5 (5.4.0-6ubuntu1) ... Setting up libdpkg-perl (1.18.9ubuntu1) ... Setting up xz-utils (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up make (4.1-9) ... Setting up dpkg-dev (1.18.9ubuntu1) ... Setting up libpng12-0:i386 (1.2.54-6ubuntu1) ... Setting up linux-libc-dev:i386 (4.4.0-30.49) ... Setting up optipng (0.7.6-1build1) ... Setting up pkgbinarymangler (130) ... Setting up policyrcd-script-zg2 (0.1-3) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-10316924', 'i386', 'yakkety-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=yakkety-proposed', '--purge=never', '--nolog', 'consensuscore_1.0.2-1.dsc'] Initiating build PACKAGEBUILD-10316924 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.13.0-91-generic #138-Ubuntu SMP Fri Jun 24 17:00:34 UTC 2016 i686 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-55.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ consensuscore 1.0.2-1 (i386) 04 Jul 2016 17:21 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: consensuscore Version: 1.0.2-1 Source Version: 1.0.2-1 Distribution: yakkety-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/consensuscore-xTe88T/consensuscore-1.0.2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/consensuscore-xTe88T' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-10316924/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── consensuscore_1.0.2-1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-BkiqJC/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-BkiqJC/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-BkiqJC/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-BkiqJC/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-BkiqJC/apt_archive ./ Sources [208 B] Get:5 copy:/«BUILDDIR»/resolver-BkiqJC/apt_archive ./ Packages [524 B] Fetched 2851 B in 0s (246 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-BkiqJC/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-BkiqJC/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, dh-exec, libboost-dev, swig, python-setuptools, python-all-dev, python-numpy, python3-setuptools, python3-all-dev, python3-numpy Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-python, dh-exec, libboost-dev, swig, python-setuptools, python-all-dev, python-numpy, python3-setuptools, python3-all-dev, python3-numpy dpkg-deb: building package 'sbuild-build-depends-consensuscore-dummy' in '/«BUILDDIR»/resolver-vvZn5W/apt_archive/sbuild-build-depends-consensuscore-dummy.deb'. Ign:1 copy:/«BUILDDIR»/resolver-vvZn5W/apt_archive ./ InRelease Get:2 copy:/«BUILDDIR»/resolver-vvZn5W/apt_archive ./ Release [2119 B] Ign:3 copy:/«BUILDDIR»/resolver-vvZn5W/apt_archive ./ Release.gpg Get:4 copy:/«BUILDDIR»/resolver-vvZn5W/apt_archive ./ Sources [477 B] Get:5 copy:/«BUILDDIR»/resolver-vvZn5W/apt_archive ./ Packages [743 B] Fetched 3339 B in 0s (315 kB/s) Reading package lists... W: The repository 'copy:/«BUILDDIR»/resolver-vvZn5W/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install consensuscore build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps4 Use 'sudo apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libblas-common libblas3 libboost-dev libboost1.60-dev libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu57 liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3.5 python3.5-dev python3.5-minimal swig swig3.0 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc groff libboost-doc libboost1.60-doc libboost-atomic1.60-dev libboost-chrono1.60-dev libboost-context1.60-dev libboost-coroutine1.60-dev libboost-date-time1.60-dev libboost-exception1.60-dev libboost-filesystem1.60-dev libboost-graph1.60-dev libboost-graph-parallel1.60-dev libboost-iostreams1.60-dev libboost-locale1.60-dev libboost-log1.60-dev libboost-math1.60-dev libboost-mpi1.60-dev libboost-mpi-python1.60-dev libboost-program-options1.60-dev libboost-python1.60-dev libboost-random1.60-dev libboost-regex1.60-dev libboost-serialization1.60-dev libboost-signals1.60-dev libboost-system1.60-dev libboost-test1.60-dev libboost-thread1.60-dev libboost-timer1.60-dev libboost-wave1.60-dev libboost1.60-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl python-doc python-tk gfortran python-nose python-numpy-dbg python-numpy-doc python-setuptools-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3-nose python3-numpy-dbg python3.5-venv python3.5-doc swig-doc swig-examples swig3.0-examples swig3.0-doc Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-python dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libblas-common libblas3 libboost-dev libboost1.60-dev libcroco3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libicu57 liblapack3 libmagic1 libmpdec2 libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.5 libpython3.5-dev libpython3.5-minimal libpython3.5-stdlib libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4 man-db mime-support po-debconf python python-all python-all-dev python-dev python-minimal python-numpy python-pkg-resources python-setuptools python2.7 python2.7-dev python2.7-minimal python3 python3-all python3-all-dev python3-dev python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3.5 python3.5-dev python3.5-minimal sbuild-build-depends-consensuscore-dummy swig swig3.0 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After this operation, 345 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-consensuscore-dummy Authentication warning overridden. Get:1 copy:/«BUILDDIR»/resolver-vvZn5W/apt_archive ./ sbuild-build-depends-consensuscore-dummy 0.invalid.0 [986 B] Get:2 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython3.5-minimal i386 3.5.2-1 [530 kB] Get:3 http://ftpmaster.internal/ubuntu yakkety/main i386 libexpat1 i386 2.1.1-1ubuntu2 [74.2 kB] Get:4 http://ftpmaster.internal/ubuntu yakkety/main i386 python3.5-minimal i386 3.5.2-1 [1677 kB] Get:5 http://ftpmaster.internal/ubuntu yakkety/main i386 python3-minimal i386 3.5.1-4 [23.5 kB] Get:6 http://ftpmaster.internal/ubuntu yakkety/main i386 mime-support all 3.59ubuntu1 [31.0 kB] Get:7 http://ftpmaster.internal/ubuntu yakkety/main i386 libmpdec2 i386 2.4.2-1 [80.7 kB] Get:8 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython3.5-stdlib i386 3.5.2-1 [2128 kB] Get:9 http://ftpmaster.internal/ubuntu yakkety/main i386 python3.5 i386 3.5.2-1 [165 kB] Get:10 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython3-stdlib i386 3.5.1-4 [6874 B] Get:11 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-python all 2.20160609 [75.9 kB] Get:12 http://ftpmaster.internal/ubuntu yakkety/main i386 python3 i386 3.5.1-4 [8710 B] Get:13 http://ftpmaster.internal/ubuntu yakkety/main i386 groff-base i386 1.22.3-8 [1150 kB] Get:14 http://ftpmaster.internal/ubuntu yakkety/main i386 bsdmainutils i386 9.0.6ubuntu3 [175 kB] Get:15 http://ftpmaster.internal/ubuntu yakkety/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB] Get:16 http://ftpmaster.internal/ubuntu yakkety/main i386 man-db i386 2.7.5-1 [865 kB] Get:17 http://ftpmaster.internal/ubuntu yakkety/main i386 libunistring0 i386 0.9.3-5.2ubuntu1 [277 kB] Get:18 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython2.7-minimal i386 2.7.12-1 [338 kB] Get:19 http://ftpmaster.internal/ubuntu yakkety/main i386 python2.7-minimal i386 2.7.12-1 [1359 kB] Get:20 http://ftpmaster.internal/ubuntu yakkety/main i386 python-minimal i386 2.7.11-2 [28.3 kB] Get:21 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython2.7-stdlib i386 2.7.12-1 [1895 kB] Get:22 http://ftpmaster.internal/ubuntu yakkety/main i386 python2.7 i386 2.7.12-1 [224 kB] Get:23 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython-stdlib i386 2.7.11-2 [7850 B] Get:24 http://ftpmaster.internal/ubuntu yakkety/main i386 python i386 2.7.11-2 [139 kB] Get:25 http://ftpmaster.internal/ubuntu yakkety/main i386 libmagic1 i386 1:5.25-2ubuntu1 [222 kB] Get:26 http://ftpmaster.internal/ubuntu yakkety/main i386 file i386 1:5.25-2ubuntu1 [21.1 kB] Get:27 http://ftpmaster.internal/ubuntu yakkety/main i386 libasprintf0v5 i386 0.19.7-2ubuntu3 [6462 B] Get:28 http://ftpmaster.internal/ubuntu yakkety/main i386 gettext-base i386 0.19.7-2ubuntu3 [48.8 kB] Get:29 http://ftpmaster.internal/ubuntu yakkety/main i386 libglib2.0-0 i386 2.49.2-2 [1188 kB] Get:30 http://ftpmaster.internal/ubuntu yakkety/main i386 libicu57 i386 57.1-1 [7806 kB] Get:31 http://ftpmaster.internal/ubuntu yakkety/main i386 libxml2 i386 2.9.3+dfsg1-1.2 [730 kB] Get:32 http://ftpmaster.internal/ubuntu yakkety/main i386 libsigsegv2 i386 2.10-5 [14.3 kB] Get:33 http://ftpmaster.internal/ubuntu yakkety/main i386 m4 i386 1.4.17-5 [195 kB] Get:34 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 autoconf all 2.69-10 [321 kB] Get:35 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 autotools-dev all 20160430.1 [39.6 kB] Get:36 http://ftpmaster.internal/ubuntu yakkety/main i386 automake all 1:1.15-4ubuntu1 [510 kB] Get:37 http://ftpmaster.internal/ubuntu yakkety/main i386 autopoint all 0.19.7-2ubuntu3 [406 kB] Get:38 http://ftpmaster.internal/ubuntu yakkety/main i386 libcroco3 i386 0.6.11-1 [87.8 kB] Get:39 http://ftpmaster.internal/ubuntu yakkety/main i386 gettext i386 0.19.7-2ubuntu3 [1085 kB] Get:40 http://ftpmaster.internal/ubuntu yakkety/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:41 http://ftpmaster.internal/ubuntu yakkety/main i386 po-debconf all 1.0.19 [234 kB] Get:42 http://ftpmaster.internal/ubuntu yakkety/main i386 libarchive-zip-perl all 1.57-1 [84.0 kB] Get:43 http://ftpmaster.internal/ubuntu yakkety/main i386 libfile-stripnondeterminism-perl all 0.019-1 [11.1 kB] Get:44 http://ftpmaster.internal/ubuntu yakkety/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:45 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-strip-nondeterminism all 0.019-1 [4858 B] Get:46 http://ftpmaster.internal/ubuntu yakkety/main i386 libtool all 2.4.6-0.1 [193 kB] Get:47 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-autoreconf all 12 [15.8 kB] Get:48 http://ftpmaster.internal/ubuntu yakkety/main i386 debhelper all 9.20160618.1ubuntu1 [711 kB] Get:49 http://ftpmaster.internal/ubuntu yakkety/main i386 libblas-common i386 3.6.0-2ubuntu2 [5338 B] Get:50 http://ftpmaster.internal/ubuntu yakkety/main i386 libblas3 i386 3.6.0-2ubuntu2 [130 kB] Get:51 http://ftpmaster.internal/ubuntu yakkety/main i386 libboost1.60-dev i386 1.60.0+dfsg-6 [6402 kB] Get:52 http://ftpmaster.internal/ubuntu yakkety/main i386 libboost-dev i386 1.60.0.0ubuntu1 [3128 B] Get:53 http://ftpmaster.internal/ubuntu yakkety/main i386 libexpat1-dev i386 2.1.1-1ubuntu2 [116 kB] Get:54 http://ftpmaster.internal/ubuntu yakkety/main i386 libgfortran3 i386 6.1.1-8ubuntu11 [263 kB] Get:55 http://ftpmaster.internal/ubuntu yakkety/main i386 liblapack3 i386 3.6.0-2ubuntu2 [1764 kB] Get:56 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython2.7 i386 2.7.12-1 [1095 kB] Get:57 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython2.7-dev i386 2.7.12-1 [27.6 MB] Get:58 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython-dev i386 2.7.11-2 [7932 B] Get:59 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython-all-dev i386 2.7.11-2 [990 B] Get:60 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython3.5 i386 3.5.2-1 [1394 kB] Get:61 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython3.5-dev i386 3.5.2-1 [37.1 MB] Get:62 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython3-dev i386 3.5.1-4 [6998 B] Get:63 http://ftpmaster.internal/ubuntu yakkety/main i386 libpython3-all-dev i386 3.5.1-4 [998 B] Get:64 http://ftpmaster.internal/ubuntu yakkety/main i386 python-all i386 2.7.11-2 [978 B] Get:65 http://ftpmaster.internal/ubuntu yakkety/main i386 python2.7-dev i386 2.7.12-1 [276 kB] Get:66 http://ftpmaster.internal/ubuntu yakkety/main i386 python-dev i386 2.7.11-2 [1168 B] Get:67 http://ftpmaster.internal/ubuntu yakkety/main i386 python-all-dev i386 2.7.11-2 [998 B] Get:68 http://ftpmaster.internal/ubuntu yakkety/main i386 python-numpy i386 1:1.11.0-1ubuntu1 [1791 kB] Get:69 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 python-pkg-resources all 20.10.1-1.1ubuntu1 [109 kB] Get:70 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 python-setuptools all 20.10.1-1.1ubuntu1 [169 kB] Get:71 http://ftpmaster.internal/ubuntu yakkety/main i386 python3-all i386 3.5.1-4 [970 B] Get:72 http://ftpmaster.internal/ubuntu yakkety/main i386 python3.5-dev i386 3.5.2-1 [413 kB] Get:73 http://ftpmaster.internal/ubuntu yakkety/main i386 python3-dev i386 3.5.1-4 [1196 B] Get:74 http://ftpmaster.internal/ubuntu yakkety/main i386 python3-all-dev i386 3.5.1-4 [992 B] Get:75 http://ftpmaster.internal/ubuntu yakkety/main i386 python3-numpy i386 1:1.11.0-1ubuntu1 [1794 kB] Get:76 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 python3-pkg-resources all 20.10.1-1.1ubuntu1 [79.2 kB] Get:77 http://ftpmaster.internal/ubuntu yakkety-proposed/main i386 python3-setuptools all 20.10.1-1.1ubuntu1 [88.4 kB] Get:78 http://ftpmaster.internal/ubuntu yakkety/universe i386 swig3.0 i386 3.0.8-0ubuntu3 [1060 kB] Get:79 http://ftpmaster.internal/ubuntu yakkety/universe i386 swig i386 3.0.8-0ubuntu3 [6284 B] Get:80 http://ftpmaster.internal/ubuntu yakkety/main i386 dh-exec i386 0.23 [24.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 107 MB in 8s (12.5 MB/s) Selecting previously unselected package libpython3.5-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12190 files and directories currently installed.) Preparing to unpack .../libpython3.5-minimal_3.5.2-1_i386.deb ... Unpacking libpython3.5-minimal:i386 (3.5.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.1.1-1ubuntu2_i386.deb ... Unpacking libexpat1:i386 (2.1.1-1ubuntu2) ... Selecting previously unselected package python3.5-minimal. Preparing to unpack .../python3.5-minimal_3.5.2-1_i386.deb ... Unpacking python3.5-minimal (3.5.2-1) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../python3-minimal_3.5.1-4_i386.deb ... Unpacking python3-minimal (3.5.1-4) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.59ubuntu1_all.deb ... Unpacking mime-support (3.59ubuntu1) ... Selecting previously unselected package libmpdec2:i386. Preparing to unpack .../libmpdec2_2.4.2-1_i386.deb ... Unpacking libmpdec2:i386 (2.4.2-1) ... Selecting previously unselected package libpython3.5-stdlib:i386. Preparing to unpack .../libpython3.5-stdlib_3.5.2-1_i386.deb ... Unpacking libpython3.5-stdlib:i386 (3.5.2-1) ... Selecting previously unselected package python3.5. Preparing to unpack .../python3.5_3.5.2-1_i386.deb ... Unpacking python3.5 (3.5.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../libpython3-stdlib_3.5.1-4_i386.deb ... Unpacking libpython3-stdlib:i386 (3.5.1-4) ... Selecting previously unselected package dh-python. Preparing to unpack .../dh-python_2.20160609_all.deb ... Unpacking dh-python (2.20160609) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libpython3.5-minimal:i386 (3.5.2-1) ... Setting up libexpat1:i386 (2.1.1-1ubuntu2) ... Setting up python3.5-minimal (3.5.2-1) ... Setting up python3-minimal (3.5.1-4) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13141 files and directories currently installed.) Preparing to unpack .../python3_3.5.1-4_i386.deb ... Unpacking python3 (3.5.1-4) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-8_i386.deb ... Unpacking groff-base (1.22.3-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_i386.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../libpipeline1_1.4.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_i386.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:i386. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_i386.deb ... Unpacking libunistring0:i386 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libpython2.7-minimal:i386. Preparing to unpack .../libpython2.7-minimal_2.7.12-1_i386.deb ... Unpacking libpython2.7-minimal:i386 (2.7.12-1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.12-1_i386.deb ... Unpacking python2.7-minimal (2.7.12-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.11-2_i386.deb ... Unpacking python-minimal (2.7.11-2) ... Selecting previously unselected package libpython2.7-stdlib:i386. Preparing to unpack .../libpython2.7-stdlib_2.7.12-1_i386.deb ... Unpacking libpython2.7-stdlib:i386 (2.7.12-1) ... Selecting previously unselected package python2.7. Preparing to unpack .../python2.7_2.7.12-1_i386.deb ... Unpacking python2.7 (2.7.12-1) ... Selecting previously unselected package libpython-stdlib:i386. Preparing to unpack .../libpython-stdlib_2.7.11-2_i386.deb ... Unpacking libpython-stdlib:i386 (2.7.11-2) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libpython2.7-minimal:i386 (2.7.12-1) ... Setting up python2.7-minimal (2.7.12-1) ... Setting up python-minimal (2.7.11-2) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14402 files and directories currently installed.) Preparing to unpack .../python_2.7.11-2_i386.deb ... Unpacking python (2.7.11-2) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_i386.deb ... Unpacking libmagic1:i386 (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_i386.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:i386. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_i386.deb ... Unpacking libasprintf0v5:i386 (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_i386.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../libglib2.0-0_2.49.2-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.49.2-2) ... Selecting previously unselected package libicu57:i386. Preparing to unpack .../libicu57_57.1-1_i386.deb ... Unpacking libicu57:i386 (57.1-1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../libxml2_2.9.3+dfsg1-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.3+dfsg1-1.2) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../libsigsegv2_2.10-5_i386.deb ... Unpacking libsigsegv2:i386 (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-5_i386.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20160430.1_all.deb ... Unpacking autotools-dev (20160430.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-4ubuntu1_all.deb ... Unpacking automake (1:1.15-4ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../autopoint_0.19.7-2ubuntu3_all.deb ... Unpacking autopoint (0.19.7-2ubuntu3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../libcroco3_0.6.11-1_i386.deb ... Unpacking libcroco3:i386 (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.7-2ubuntu3_i386.deb ... Unpacking gettext (0.19.7-2ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.57-1_all.deb ... Unpacking libarchive-zip-perl (1.57-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.019-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.019-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.019-1_all.deb ... Unpacking dh-strip-nondeterminism (0.019-1) ... Selecting previously unselected package libtool. Preparing to unpack .../libtool_2.4.6-0.1_all.deb ... Unpacking libtool (2.4.6-0.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160618.1ubuntu1_all.deb ... Unpacking debhelper (9.20160618.1ubuntu1) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_i386.deb ... Unpacking libblas-common (3.6.0-2ubuntu2) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_3.6.0-2ubuntu2_i386.deb ... Unpacking libblas3 (3.6.0-2ubuntu2) ... Selecting previously unselected package libboost1.60-dev:i386. Preparing to unpack .../libboost1.60-dev_1.60.0+dfsg-6_i386.deb ... Unpacking libboost1.60-dev:i386 (1.60.0+dfsg-6) ... Selecting previously unselected package libboost-dev:i386. Preparing to unpack .../libboost-dev_1.60.0.0ubuntu1_i386.deb ... Unpacking libboost-dev:i386 (1.60.0.0ubuntu1) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../libexpat1-dev_2.1.1-1ubuntu2_i386.deb ... Unpacking libexpat1-dev:i386 (2.1.1-1ubuntu2) ... Selecting previously unselected package libgfortran3:i386. Preparing to unpack .../libgfortran3_6.1.1-8ubuntu11_i386.deb ... Unpacking libgfortran3:i386 (6.1.1-8ubuntu11) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_i386.deb ... Unpacking liblapack3 (3.6.0-2ubuntu2) ... Selecting previously unselected package libpython2.7:i386. Preparing to unpack .../libpython2.7_2.7.12-1_i386.deb ... Unpacking libpython2.7:i386 (2.7.12-1) ... Selecting previously unselected package libpython2.7-dev:i386. Preparing to unpack .../libpython2.7-dev_2.7.12-1_i386.deb ... Unpacking libpython2.7-dev:i386 (2.7.12-1) ... Selecting previously unselected package libpython-dev:i386. Preparing to unpack .../libpython-dev_2.7.11-2_i386.deb ... Unpacking libpython-dev:i386 (2.7.11-2) ... Selecting previously unselected package libpython-all-dev:i386. Preparing to unpack .../libpython-all-dev_2.7.11-2_i386.deb ... Unpacking libpython-all-dev:i386 (2.7.11-2) ... Selecting previously unselected package libpython3.5:i386. Preparing to unpack .../libpython3.5_3.5.2-1_i386.deb ... Unpacking libpython3.5:i386 (3.5.2-1) ... Selecting previously unselected package libpython3.5-dev:i386. Preparing to unpack .../libpython3.5-dev_3.5.2-1_i386.deb ... Unpacking libpython3.5-dev:i386 (3.5.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../libpython3-dev_3.5.1-4_i386.deb ... Unpacking libpython3-dev:i386 (3.5.1-4) ... Selecting previously unselected package libpython3-all-dev:i386. Preparing to unpack .../libpython3-all-dev_3.5.1-4_i386.deb ... Unpacking libpython3-all-dev:i386 (3.5.1-4) ... Selecting previously unselected package python-all. Preparing to unpack .../python-all_2.7.11-2_i386.deb ... Unpacking python-all (2.7.11-2) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../python2.7-dev_2.7.12-1_i386.deb ... Unpacking python2.7-dev (2.7.12-1) ... Selecting previously unselected package python-dev. Preparing to unpack .../python-dev_2.7.11-2_i386.deb ... Unpacking python-dev (2.7.11-2) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../python-all-dev_2.7.11-2_i386.deb ... Unpacking python-all-dev (2.7.11-2) ... Selecting previously unselected package python-numpy. Preparing to unpack .../python-numpy_1%3a1.11.0-1ubuntu1_i386.deb ... Unpacking python-numpy (1:1.11.0-1ubuntu1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../python-pkg-resources_20.10.1-1.1ubuntu1_all.deb ... Unpacking python-pkg-resources (20.10.1-1.1ubuntu1) ... Selecting previously unselected package python-setuptools. Preparing to unpack .../python-setuptools_20.10.1-1.1ubuntu1_all.deb ... Unpacking python-setuptools (20.10.1-1.1ubuntu1) ... Selecting previously unselected package python3-all. Preparing to unpack .../python3-all_3.5.1-4_i386.deb ... Unpacking python3-all (3.5.1-4) ... Selecting previously unselected package python3.5-dev. Preparing to unpack .../python3.5-dev_3.5.2-1_i386.deb ... Unpacking python3.5-dev (3.5.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../python3-dev_3.5.1-4_i386.deb ... Unpacking python3-dev (3.5.1-4) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../python3-all-dev_3.5.1-4_i386.deb ... Unpacking python3-all-dev (3.5.1-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../python3-numpy_1%3a1.11.0-1ubuntu1_i386.deb ... Unpacking python3-numpy (1:1.11.0-1ubuntu1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../python3-pkg-resources_20.10.1-1.1ubuntu1_all.deb ... Unpacking python3-pkg-resources (20.10.1-1.1ubuntu1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../python3-setuptools_20.10.1-1.1ubuntu1_all.deb ... Unpacking python3-setuptools (20.10.1-1.1ubuntu1) ... Selecting previously unselected package swig3.0. Preparing to unpack .../swig3.0_3.0.8-0ubuntu3_i386.deb ... Unpacking swig3.0 (3.0.8-0ubuntu3) ... Selecting previously unselected package swig. Preparing to unpack .../swig_3.0.8-0ubuntu3_i386.deb ... Unpacking swig (3.0.8-0ubuntu3) ... Selecting previously unselected package dh-exec. Preparing to unpack .../archives/dh-exec_0.23_i386.deb ... Unpacking dh-exec (0.23) ... Selecting previously unselected package sbuild-build-depends-consensuscore-dummy. Preparing to unpack .../sbuild-build-depends-consensuscore-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-consensuscore-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up libarchive-zip-perl (1.57-1) ... Setting up swig3.0 (3.0.8-0ubuntu3) ... Setting up mime-support (3.59ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:i386 (2.10-5) ... Setting up libblas-common (3.6.0-2ubuntu2) ... Setting up libgfortran3:i386 (6.1.1-8ubuntu11) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:i386 (2.49.2-2) ... No schema files found: doing nothing. Setting up libpipeline1:i386 (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:i386 (57.1-1) ... Setting up libxml2:i386 (2.9.3+dfsg1-1.2) ... Setting up libmagic1:i386 (1:5.25-2ubuntu1) ... Setting up libcroco3:i386 (0.6.11-1) ... Setting up libblas3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up autotools-dev (20160430.1) ... Setting up libunistring0:i386 (0.9.3-5.2ubuntu1) ... Setting up libasprintf0v5:i386 (0.19.7-2ubuntu3) ... Setting up libboost1.60-dev:i386 (1.60.0+dfsg-6) ... Setting up libexpat1-dev:i386 (2.1.1-1ubuntu2) ... Setting up libboost-dev:i386 (1.60.0.0ubuntu1) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpython2.7-stdlib:i386 (2.7.12-1) ... Setting up autopoint (0.19.7-2ubuntu3) ... Setting up libmpdec2:i386 (2.4.2-1) ... Setting up libfile-stripnondeterminism-perl (0.019-1) ... Setting up swig (3.0.8-0ubuntu3) ... Setting up liblapack3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython3.5-stdlib:i386 (3.5.2-1) ... Setting up python2.7 (2.7.12-1) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libpython-stdlib:i386 (2.7.11-2) ... Setting up libpython2.7:i386 (2.7.12-1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:i386 (2.7.12-1) ... Setting up python2.7-dev (2.7.12-1) ... Setting up python (2.7.11-2) ... Setting up libtool (2.4.6-0.1) ... Setting up python3.5 (3.5.2-1) ... Setting up libpython3-stdlib:i386 (3.5.1-4) ... Setting up libpython-dev:i386 (2.7.11-2) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up libpython3.5:i386 (3.5.2-1) ... Setting up python-dev (2.7.11-2) ... Setting up libpython-all-dev:i386 (2.7.11-2) ... Setting up python-pkg-resources (20.10.1-1.1ubuntu1) ... Setting up libpython3.5-dev:i386 (3.5.2-1) ... Setting up python-numpy (1:1.11.0-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up python3.5-dev (3.5.2-1) ... Setting up python-all (2.7.11-2) ... Setting up libpython3-dev:i386 (3.5.1-4) ... Setting up python-setuptools (20.10.1-1.1ubuntu1) ... Setting up po-debconf (1.0.19) ... Setting up python-all-dev (2.7.11-2) ... Setting up libpython3-all-dev:i386 (3.5.1-4) ... Setting up python3 (3.5.1-4) ... Setting up python3-numpy (1:1.11.0-1ubuntu1) ... Setting up python3-dev (3.5.1-4) ... Setting up python3-pkg-resources (20.10.1-1.1ubuntu1) ... Setting up dh-strip-nondeterminism (0.019-1) ... Setting up python3-all (3.5.1-4) ... Setting up python3-setuptools (20.10.1-1.1ubuntu1) ... Setting up dh-python (2.20160609) ... Setting up debhelper (9.20160618.1ubuntu1) ... Setting up dh-autoreconf (12) ... Setting up python3-all-dev (3.5.1-4) ... Setting up dh-exec (0.23) ... Setting up sbuild-build-depends-consensuscore-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.13.0-91-generic amd64 (i686) Toolchain package versions: binutils_2.26.1-1ubuntu1 dpkg-dev_1.18.9ubuntu1 g++-5_5.4.0-6ubuntu1 gcc-5_5.4.0-6ubuntu1 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.4.0-6ubuntu1 libstdc++6_6.1.1-8ubuntu11 linux-libc-dev_4.4.0-30.49 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.3~exp2ubuntu1 apt-transport-https_1.3~exp2ubuntu1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.7-2ubuntu3 autotools-dev_20160430.1 base-files_9.6ubuntu2 base-passwd_3.5.39 bash_4.3-15ubuntu1 binutils_2.26.1-1ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28-5ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.4.0-6ubuntu1 dash_0.5.8-2.1ubuntu2 debconf_1.5.59ubuntu1 debhelper_9.20160618.1ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-exec_0.23 dh-python_2.20160609 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1ubuntu1 dpkg_1.18.9ubuntu1 dpkg-dev_1.18.9ubuntu1 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160517-5 g++_4:5.3.1-1ubuntu1 g++-5_5.4.0-6ubuntu1 gcc_4:5.3.1-1ubuntu1 gcc-5_5.4.0-6ubuntu1 gcc-5-base_5.4.0-6ubuntu1 gcc-6-base_6.1.1-8ubuntu11 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-4ubuntu1 hostname_3.17ubuntu1 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5.3ubuntu1 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.3~exp2ubuntu1 libarchive-zip-perl_1.57-1 libasan2_5.4.0-6ubuntu1 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_6.1.1-8ubuntu11 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblas-common_3.6.0-2ubuntu2 libblas3_3.6.0-2ubuntu2 libblkid1_2.28-5ubuntu2 libboost-dev_1.60.0.0ubuntu1 libboost1.60-dev_1.60.0+dfsg-6 libbz2-1.0_1.0.6-8build1 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-8ubuntu11 libcilkrts5_6.1.1-8ubuntu11 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.127-1ubuntu1 libdpkg-perl_1.18.9ubuntu1 libexpat1_2.1.1-1ubuntu2 libexpat1-dev_2.1.1-1ubuntu2 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.28-5ubuntu2 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libgcc-5-dev_5.4.0-6ubuntu1 libgcc1_1:6.1.1-8ubuntu11 libgcrypt20_1.7.1-2 libgdbm3_1.8.3-14 libgfortran3_6.1.1-8ubuntu11 libglib2.0-0_2.49.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.4.11-4ubuntu1 libgomp1_6.1.1-8ubuntu11 libgpg-error0_1.23-1 libgssapi-krb5-2_1.14.2+dfsg-1ubuntu1 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu57_57.1-1 libidn11_1.32-3.1 libisl15_0.17.1-1 libitm1_6.1.1-8ubuntu11 libk5crypto3_1.14.2+dfsg-1ubuntu1 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.14.2+dfsg-1ubuntu1 libkrb5support0_1.14.2+dfsg-1ubuntu1 liblapack3_3.6.0-2ubuntu2 libldap-2.4-2_2.4.42+dfsg-2ubuntu4 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2.1ubuntu1 libmagic1_1:5.25-2ubuntu1 libmount1_2.28-5ubuntu2 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.4-2 libmpx0_5.4.0-6ubuntu1 libncurses5_6.0+20160319-1ubuntu1 libncursesw5_6.0+20160319-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6ubuntu1 libpng16-16_1.6.23-1 libprocps4_2:3.3.10-4ubuntu2 libprocps5_2:3.3.11-3ubuntu1 libpython-all-dev_2.7.11-2 libpython-dev_2.7.11-2 libpython-stdlib_2.7.11-2 libpython2.7_2.7.12-1 libpython2.7-dev_2.7.12-1 libpython2.7-minimal_2.7.12-1 libpython2.7-stdlib_2.7.12-1 libpython3-all-dev_3.5.1-4 libpython3-dev_3.5.1-4 libpython3-stdlib_3.5.1-4 libpython3.5_3.5.2-1 libpython3.5-dev_3.5.2-1 libpython3.5-minimal_3.5.2-1 libpython3.5-stdlib_3.5.2-1 libquadmath0_6.1.1-8ubuntu11 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsmartcols1_2.28-5ubuntu2 libsqlite3-0_3.13.0-1 libss2_1.43.1-1 libssl1.0.0_1.0.2g-1ubuntu5 libstdc++-5-dev_5.4.0-6ubuntu1 libstdc++6_6.1.1-8ubuntu11 libsystemd0_230-5 libtasn1-6_4.8-1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-1ubuntu1 libtool_2.4.6-0.1 libubsan0_6.1.1-8ubuntu11 libudev1_230-5 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5ubuntu2 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_4.4.0-30.49 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu6 lsb-base_9.20160110ubuntu4 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.59ubuntu1 mount_2.28-5ubuntu2 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160319-1ubuntu1 ncurses-bin_6.0+20160319-1ubuntu1 openssl_1.0.2g-1ubuntu5 optipng_0.7.6-1build1 passwd_1:4.2-3.1ubuntu6 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-create-dbgsym_0.72 pkgbinarymangler_130 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.11-3ubuntu1 python_2.7.11-2 python-all_2.7.11-2 python-all-dev_2.7.11-2 python-dev_2.7.11-2 python-minimal_2.7.11-2 python-numpy_1:1.11.0-1ubuntu1 python-pkg-resources_20.10.1-1.1ubuntu1 python-setuptools_20.10.1-1.1ubuntu1 python2.7_2.7.12-1 python2.7-dev_2.7.12-1 python2.7-minimal_2.7.12-1 python3_3.5.1-4 python3-all_3.5.1-4 python3-all-dev_3.5.1-4 python3-dev_3.5.1-4 python3-minimal_3.5.1-4 python3-numpy_1:1.11.0-1ubuntu1 python3-pkg-resources_20.10.1-1.1ubuntu1 python3-setuptools_20.10.1-1.1ubuntu1 python3.5_3.5.2-1 python3.5-dev_3.5.2-1 python3.5-minimal_3.5.2-1 readline-common_6.3-8ubuntu2 sbuild-build-depends-consensuscore-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 swig_3.0.8-0ubuntu3 swig3.0_3.0.8-0ubuntu3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7ubuntu1 sysvinit-utils_2.88dsf-59.7ubuntu2 tar_1.29-1 tzdata_2016e-1 ubuntu-keyring_2016.05.13 util-linux_2.28-5ubuntu2 xz-utils_5.1.1alpha+20120614-2.1ubuntu1 zlib1g_1:1.2.8.dfsg-2ubuntu5 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sun Jul 3 21:20:04 2016 UTC using RSA key ID 3AF9DDC1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./consensuscore_1.0.2-1.dsc dpkg-source: info: extracting consensuscore in consensuscore-1.0.2 dpkg-source: info: unpacking consensuscore_1.0.2.orig.tar.gz dpkg-source: info: unpacking consensuscore_1.0.2-1.debian.tar.xz dpkg-source: info: applying spelling.patch dpkg-source: info: applying compiler-flags.patch Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: info: source package consensuscore dpkg-buildpackage: info: source version 1.0.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build consensuscore-1.0.2 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild dh_testdir -O--buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:184: python2.7 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:184: python3.5 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.5' does not exist -- can't clean it dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python2,python3 --buildsystem=pybuild dh_testdir -a -O--buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:184: python2.7 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config I: pybuild base:184: python3.5 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:184: /usr/bin/python setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig3.0 PYTHON_INCLUDE = /usr/include/python2.7 NUMPY_INCLUDE = /usr/lib/python2.7/dist-packages/numpy/core/include DEBUG = CPP_ABI = c++98 make[1]: Entering directory '/«PKGBUILDDIR»' make -f make/Cpp.mk make[2]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/build/C++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Version.cpp -o /«PKGBUILDDIR»/build/C++/Version.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Version.o -MM src/C++/Version.cpp > /«PKGBUILDDIR»/build/C++/Version.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Features.cpp -o /«PKGBUILDDIR»/build/C++/Features.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Features.o -MM src/C++/Features.cpp > /«PKGBUILDDIR»/build/C++/Features.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Align/LinearAlignment.cpp -o /«PKGBUILDDIR»/build/C++/LinearAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/LinearAlignment.o -MM src/C++/Align/LinearAlignment.cpp > /«PKGBUILDDIR»/build/C++/LinearAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Align/AlignConfig.cpp -o /«PKGBUILDDIR»/build/C++/AlignConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/AlignConfig.o -MM src/C++/Align/AlignConfig.cpp > /«PKGBUILDDIR»/build/C++/AlignConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Align/AffineAlignment.cpp -o /«PKGBUILDDIR»/build/C++/AffineAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/AffineAlignment.o -MM src/C++/Align/AffineAlignment.cpp > /«PKGBUILDDIR»/build/C++/AffineAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Align/PairwiseAlignment.cpp -o /«PKGBUILDDIR»/build/C++/PairwiseAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/PairwiseAlignment.o -MM src/C++/Align/PairwiseAlignment.cpp > /«PKGBUILDDIR»/build/C++/PairwiseAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Poa/RangeFinder.cpp -o /«PKGBUILDDIR»/build/C++/RangeFinder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/RangeFinder.o -MM src/C++/Poa/RangeFinder.cpp > /«PKGBUILDDIR»/build/C++/RangeFinder.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Poa/PoaGraphTraversals.cpp -o /«PKGBUILDDIR»/build/C++/PoaGraphTraversals.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/PoaGraphTraversals.o -MM src/C++/Poa/PoaGraphTraversals.cpp > /«PKGBUILDDIR»/build/C++/PoaGraphTraversals.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Poa/PoaGraphImpl.cpp -o /«PKGBUILDDIR»/build/C++/PoaGraphImpl.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/PoaGraphImpl.o -MM src/C++/Poa/PoaGraphImpl.cpp > /«PKGBUILDDIR»/build/C++/PoaGraphImpl.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Poa/PoaConsensus.cpp -o /«PKGBUILDDIR»/build/C++/PoaConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/PoaConsensus.o -MM src/C++/Poa/PoaConsensus.cpp > /«PKGBUILDDIR»/build/C++/PoaConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Poa/PoaGraph.cpp -o /«PKGBUILDDIR»/build/C++/PoaGraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/PoaGraph.o -MM src/C++/Poa/PoaGraph.cpp > /«PKGBUILDDIR»/build/C++/PoaGraph.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Matrix/DenseMatrix.cpp -o /«PKGBUILDDIR»/build/C++/DenseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/DenseMatrix.o -MM src/C++/Matrix/DenseMatrix.cpp > /«PKGBUILDDIR»/build/C++/DenseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Matrix/SparseMatrix.cpp -o /«PKGBUILDDIR»/build/C++/SparseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/SparseMatrix.o -MM src/C++/Matrix/SparseMatrix.cpp > /«PKGBUILDDIR»/build/C++/SparseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/QuiverConfig.cpp -o /«PKGBUILDDIR»/build/C++/QuiverConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/QuiverConfig.o -MM src/C++/Quiver/QuiverConfig.cpp > /«PKGBUILDDIR»/build/C++/QuiverConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/MultiReadMutationScorer.cpp -o /«PKGBUILDDIR»/build/C++/MultiReadMutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/MultiReadMutationScorer.o -MM src/C++/Quiver/MultiReadMutationScorer.cpp > /«PKGBUILDDIR»/build/C++/MultiReadMutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/Diploid.cpp -o /«PKGBUILDDIR»/build/C++/Diploid.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Diploid.o -MM src/C++/Quiver/Diploid.cpp > /«PKGBUILDDIR»/build/C++/Diploid.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/SimpleRecursor.cpp -o /«PKGBUILDDIR»/build/C++/SimpleRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/SimpleRecursor.o -MM src/C++/Quiver/SimpleRecursor.cpp > /«PKGBUILDDIR»/build/C++/SimpleRecursor.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/detail/RecursorBase.cpp -o /«PKGBUILDDIR»/build/C++/RecursorBase.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/RecursorBase.o -MM src/C++/Quiver/detail/RecursorBase.cpp > /«PKGBUILDDIR»/build/C++/RecursorBase.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/QuiverConsensus.cpp -o /«PKGBUILDDIR»/build/C++/QuiverConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/QuiverConsensus.o -MM src/C++/Quiver/QuiverConsensus.cpp > /«PKGBUILDDIR»/build/C++/QuiverConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/MutationEnumerator.cpp -o /«PKGBUILDDIR»/build/C++/MutationEnumerator.o src/C++/Quiver/MutationEnumerator.cpp: In member function ‘virtual std::vector ConsensusCore::DinucleotideRepeatMutationEnumerator::Mutations(int, int) const’: src/C++/Quiver/MutationEnumerator.cpp:160:5: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false [-Wstrict-overflow] DinucleotideRepeatMutationEnumerator::Mutations(int beginPos, int endPos) const ^ In file included from /«PKGBUILDDIR»/include/ConsensusCore/Mutation.hpp:130:0, from /«PKGBUILDDIR»/include/ConsensusCore/Quiver/MutationEnumerator.hpp:42, from src/C++/Quiver/MutationEnumerator.cpp:38: /«PKGBUILDDIR»/include/ConsensusCore/Mutation-inl.hpp:92:35: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false [-Wstrict-overflow] (type_ == DELETION && (start_ < end_) && newBases_.length() == 0) || ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/MutationEnumerator.o -MM src/C++/Quiver/MutationEnumerator.cpp > /«PKGBUILDDIR»/build/C++/MutationEnumerator.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/ReadScorer.cpp -o /«PKGBUILDDIR»/build/C++/ReadScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/ReadScorer.o -MM src/C++/Quiver/ReadScorer.cpp > /«PKGBUILDDIR»/build/C++/ReadScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/MutationScorer.cpp -o /«PKGBUILDDIR»/build/C++/MutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/MutationScorer.o -MM src/C++/Quiver/MutationScorer.cpp > /«PKGBUILDDIR»/build/C++/MutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Quiver/SseRecursor.cpp -o /«PKGBUILDDIR»/build/C++/SseRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/SseRecursor.o -MM src/C++/Quiver/SseRecursor.cpp > /«PKGBUILDDIR»/build/C++/SseRecursor.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Read.cpp -o /«PKGBUILDDIR»/build/C++/Read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Read.o -MM src/C++/Read.cpp > /«PKGBUILDDIR»/build/C++/Read.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Feature.cpp -o /«PKGBUILDDIR»/build/C++/Feature.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Feature.o -MM src/C++/Feature.cpp > /«PKGBUILDDIR»/build/C++/Feature.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Utils.cpp -o /«PKGBUILDDIR»/build/C++/Utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Utils.o -MM src/C++/Utils.cpp > /«PKGBUILDDIR»/build/C++/Utils.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Coverage.cpp -o /«PKGBUILDDIR»/build/C++/Coverage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Coverage.o -MM src/C++/Coverage.cpp > /«PKGBUILDDIR»/build/C++/Coverage.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Checksum.cpp -o /«PKGBUILDDIR»/build/C++/Checksum.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Checksum.o -MM src/C++/Checksum.cpp > /«PKGBUILDDIR»/build/C++/Checksum.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Sequence.cpp -o /«PKGBUILDDIR»/build/C++/Sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Sequence.o -MM src/C++/Sequence.cpp > /«PKGBUILDDIR»/build/C++/Sequence.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Logging/Logging.cpp -o /«PKGBUILDDIR»/build/C++/Logging.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Logging.o -MM src/C++/Logging/Logging.cpp > /«PKGBUILDDIR»/build/C++/Logging.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Edna/EdnaCounts.cpp -o /«PKGBUILDDIR»/build/C++/EdnaCounts.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/EdnaCounts.o -MM src/C++/Edna/EdnaCounts.cpp > /«PKGBUILDDIR»/build/C++/EdnaCounts.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Statistics/Binomial.cpp -o /«PKGBUILDDIR»/build/C++/Binomial.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Binomial.o -MM src/C++/Statistics/Binomial.cpp > /«PKGBUILDDIR»/build/C++/Binomial.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++98 -Wall -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -c src/C++/Mutation.cpp -o /«PKGBUILDDIR»/build/C++/Mutation.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -MT /«PKGBUILDDIR»/build/C++/Mutation.o -MM src/C++/Mutation.cpp > /«PKGBUILDDIR»/build/C++/Mutation.d ar crs /«PKGBUILDDIR»/build/C++/libConsensusCore.a /«PKGBUILDDIR»/build/C++/Version.o /«PKGBUILDDIR»/build/C++/Features.o /«PKGBUILDDIR»/build/C++/LinearAlignment.o /«PKGBUILDDIR»/build/C++/AlignConfig.o /«PKGBUILDDIR»/build/C++/AffineAlignment.o /«PKGBUILDDIR»/build/C++/PairwiseAlignment.o /«PKGBUILDDIR»/build/C++/RangeFinder.o /«PKGBUILDDIR»/build/C++/PoaGraphTraversals.o /«PKGBUILDDIR»/build/C++/PoaGraphImpl.o /«PKGBUILDDIR»/build/C++/PoaConsensus.o /«PKGBUILDDIR»/build/C++/PoaGraph.o /«PKGBUILDDIR»/build/C++/DenseMatrix.o /«PKGBUILDDIR»/build/C++/SparseMatrix.o /«PKGBUILDDIR»/build/C++/QuiverConfig.o /«PKGBUILDDIR»/build/C++/MultiReadMutationScorer.o /«PKGBUILDDIR»/build/C++/Diploid.o /«PKGBUILDDIR»/build/C++/SimpleRecursor.o /«PKGBUILDDIR»/build/C++/RecursorBase.o /«PKGBUILDDIR»/build/C++/QuiverConsensus.o /«PKGBUILDDIR»/build/C++/MutationEnumerator.o /«PKGBUILDDIR»/build/C++/ReadScorer.o /«PKGBUILDDIR»/build/C++/MutationScorer.o /«PKGBUILDDIR»/build/C++/SseRecursor.o /«PKGBUILDDIR»/build/C++/Read.o /«PKGBUILDDIR»/build/C++/Feature.o /«PKGBUILDDIR»/build/C++/Utils.o /«PKGBUILDDIR»/build/C++/Coverage.o /«PKGBUILDDIR»/build/C++/Checksum.o /«PKGBUILDDIR»/build/C++/Sequence.o /«PKGBUILDDIR»/build/C++/Logging.o /«PKGBUILDDIR»/build/C++/EdnaCounts.o /«PKGBUILDDIR»/build/C++/Binomial.o /«PKGBUILDDIR»/build/C++/Mutation.o touch /«PKGBUILDDIR»/build/C++/libConsensusCore.a make[2]: Leaving directory '/«PKGBUILDDIR»' make -f make/Python.mk make[2]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/build/Python SWIG_LIB=/usr/share/swig3.0 /usr/bin/swig -Wall -c++ -python -builtin -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -module ConsensusCore -o /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /«PKGBUILDDIR»/include/ConsensusCore/Feature.hpp:56: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Matrix/DenseMatrix.hpp:64: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Poa/PoaConsensus.hpp:60: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread -shared -Wl,-O1 -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -I /usr/include/python2.7 -I /usr/lib/python2.7/dist-packages/numpy/core/include /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx /«PKGBUILDDIR»/build/C++/libConsensusCore.a -o /«PKGBUILDDIR»/build/Python/_ConsensusCore.so make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' I: pybuild base:184: /usr/bin/python3 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig3.0 PYTHON_INCLUDE = /usr/include/python3.5m NUMPY_INCLUDE = /usr/lib/python3/dist-packages/numpy/core/include DEBUG = CPP_ABI = c++98 make[1]: Entering directory '/«PKGBUILDDIR»' make -f make/Cpp.mk make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: '/«PKGBUILDDIR»/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/«PKGBUILDDIR»' make -f make/Python.mk make[2]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/build/Python SWIG_LIB=/usr/share/swig3.0 /usr/bin/swig -Wall -c++ -python -builtin -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -module ConsensusCore -o /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /«PKGBUILDDIR»/include/ConsensusCore/Feature.hpp:56: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Matrix/DenseMatrix.hpp:64: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Poa/PoaConsensus.hpp:60: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread -shared -Wl,-O1 -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -I /usr/include/python3.5m -I /usr/lib/python3/dist-packages/numpy/core/include /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx /«PKGBUILDDIR»/build/C++/libConsensusCore.a -o /«PKGBUILDDIR»/build/Python/_ConsensusCore.so make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/make test make[2]: Entering directory '/«PKGBUILDDIR»' /usr/bin/make -f make/Cpp.mk make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: '/«PKGBUILDDIR»/build/C++/libConsensusCore.a' is up to date. make[3]: Leaving directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/ParameterSettings.cpp -o /«PKGBUILDDIR»/build/Tests/ParameterSettings.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestMutationScorer.cpp -o /«PKGBUILDDIR»/build/Tests/TestMutationScorer.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestSparseVector.cpp -o /«PKGBUILDDIR»/build/Tests/TestSparseVector.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestMatrixFacades.cpp -o /«PKGBUILDDIR»/build/Tests/TestMatrixFacades.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestQvEvaluator.cpp -o /«PKGBUILDDIR»/build/Tests/TestQvEvaluator.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestPairwiseAlignment.cpp -o /«PKGBUILDDIR»/build/Tests/TestPairwiseAlignment.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestMutationEnumerator.cpp -o /«PKGBUILDDIR»/build/Tests/TestMutationEnumerator.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestMutations.cpp -o /«PKGBUILDDIR»/build/Tests/TestMutations.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestPoaConsensus.cpp -o /«PKGBUILDDIR»/build/Tests/TestPoaConsensus.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestCoverage.cpp -o /«PKGBUILDDIR»/build/Tests/TestCoverage.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestDiploidQuiver.cpp -o /«PKGBUILDDIR»/build/Tests/TestDiploidQuiver.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestMultiReadMutationScorer.cpp -o /«PKGBUILDDIR»/build/Tests/TestMultiReadMutationScorer.o mkdir -p /«PKGBUILDDIR»/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -isystem /«PKGBUILDDIR»/external/gmock-1.7.0 -c /«PKGBUILDDIR»/src/Tests/TestRecursors.cpp -o /«PKGBUILDDIR»/build/Tests/TestRecursors.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro /«PKGBUILDDIR»/build/Tests/ParameterSettings.o /«PKGBUILDDIR»/build/Tests/TestMutationScorer.o /«PKGBUILDDIR»/build/Tests/TestSparseVector.o /«PKGBUILDDIR»/build/Tests/TestMatrixFacades.o /«PKGBUILDDIR»/build/Tests/TestQvEvaluator.o /«PKGBUILDDIR»/build/Tests/TestPairwiseAlignment.o /«PKGBUILDDIR»/build/Tests/TestMutationEnumerator.o /«PKGBUILDDIR»/build/Tests/TestMutations.o /«PKGBUILDDIR»/build/Tests/TestPoaConsensus.o /«PKGBUILDDIR»/build/Tests/TestCoverage.o /«PKGBUILDDIR»/build/Tests/TestDiploidQuiver.o /«PKGBUILDDIR»/build/Tests/TestMultiReadMutationScorer.o /«PKGBUILDDIR»/build/Tests/TestRecursors.o /«PKGBUILDDIR»/build/C++/libConsensusCore.a -I/«PKGBUILDDIR»/external/gmock-1.7.0 /«PKGBUILDDIR»/external/gmock-1.7.0/gmock-gtest-all.cc /«PKGBUILDDIR»/external/gmock-1.7.0/gmock_main.cc -lpthread -o /«PKGBUILDDIR»/build/Tests/test-runner GTEST_OUTPUT="xml:tests-summary.xml" /«PKGBUILDDIR»/build/Tests/test-runner Running main() from gmock_main.cc [==========] Running 158 tests from 29 test cases. [----------] Global test environment set-up. [----------] 8 tests from MutationScorerTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/0.BasicTest [ OK ] MutationScorerTest/0.BasicTest (0 ms) [ RUN ] MutationScorerTest/0.CopyTest [ OK ] MutationScorerTest/0.CopyTest (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtBeginning [ OK ] MutationScorerTest/0.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtEnd [ OK ] MutationScorerTest/0.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/0.TinyTemplate [ OK ] MutationScorerTest/0.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/0.TemplateMutationWorkflow [ OK ] MutationScorerTest/0.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/0.DinucleotideInsertionTest [ OK ] MutationScorerTest/0.DinucleotideInsertionTest (3 ms) [ RUN ] MutationScorerTest/0.DinucleotideDeletionTest [ OK ] MutationScorerTest/0.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/0 (7 ms total) [----------] 8 tests from MutationScorerTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/1.BasicTest [ OK ] MutationScorerTest/1.BasicTest (0 ms) [ RUN ] MutationScorerTest/1.CopyTest [ OK ] MutationScorerTest/1.CopyTest (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtBeginning [ OK ] MutationScorerTest/1.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtEnd [ OK ] MutationScorerTest/1.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/1.TinyTemplate [ OK ] MutationScorerTest/1.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/1.TemplateMutationWorkflow [ OK ] MutationScorerTest/1.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/1.DinucleotideInsertionTest [ OK ] MutationScorerTest/1.DinucleotideInsertionTest (2 ms) [ RUN ] MutationScorerTest/1.DinucleotideDeletionTest [ OK ] MutationScorerTest/1.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/1 (7 ms total) [----------] 8 tests from MutationScorerTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/2.BasicTest [ OK ] MutationScorerTest/2.BasicTest (0 ms) [ RUN ] MutationScorerTest/2.CopyTest [ OK ] MutationScorerTest/2.CopyTest (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtBeginning [ OK ] MutationScorerTest/2.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtEnd [ OK ] MutationScorerTest/2.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/2.TinyTemplate [ OK ] MutationScorerTest/2.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/2.TemplateMutationWorkflow [ OK ] MutationScorerTest/2.TemplateMutationWorkflow (1 ms) [ RUN ] MutationScorerTest/2.DinucleotideInsertionTest [ OK ] MutationScorerTest/2.DinucleotideInsertionTest (2 ms) [ RUN ] MutationScorerTest/2.DinucleotideDeletionTest [ OK ] MutationScorerTest/2.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/2 (7 ms total) [----------] 8 tests from MutationScorerTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/3.BasicTest [ OK ] MutationScorerTest/3.BasicTest (0 ms) [ RUN ] MutationScorerTest/3.CopyTest [ OK ] MutationScorerTest/3.CopyTest (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtBeginning [ OK ] MutationScorerTest/3.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtEnd [ OK ] MutationScorerTest/3.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/3.TinyTemplate [ OK ] MutationScorerTest/3.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/3.TemplateMutationWorkflow [ OK ] MutationScorerTest/3.TemplateMutationWorkflow (1 ms) [ RUN ] MutationScorerTest/3.DinucleotideInsertionTest [ OK ] MutationScorerTest/3.DinucleotideInsertionTest (2 ms) [ RUN ] MutationScorerTest/3.DinucleotideDeletionTest [ OK ] MutationScorerTest/3.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/3 (8 ms total) [----------] 2 tests from SparseVectorTest [ RUN ] SparseVectorTest.BasicTest [ OK ] SparseVectorTest.BasicTest (0 ms) [ RUN ] SparseVectorTest.BasicTest2 [ OK ] SparseVectorTest.BasicTest2 (0 ms) [----------] 2 tests from SparseVectorTest (1 ms total) [----------] 1 test from SparseVector [ RUN ] SparseVector.CopyTest [ OK ] SparseVector.CopyTest (0 ms) [----------] 1 test from SparseVector (0 ms total) [----------] 11 tests from MatrixTest/0, where TypeParam = ConsensusCore::DenseMatrix [ RUN ] MatrixTest/0.Basic [ OK ] MatrixTest/0.Basic (0 ms) [ RUN ] MatrixTest/0.Nullability [ OK ] MatrixTest/0.Nullability (0 ms) [ RUN ] MatrixTest/0.Ranges [ OK ] MatrixTest/0.Ranges (0 ms) [ RUN ] MatrixTest/0.IsColumnEmpty [ OK ] MatrixTest/0.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/0.SSE [ OK ] MatrixTest/0.SSE (0 ms) [ RUN ] MatrixTest/0.ToHostArray [ OK ] MatrixTest/0.ToHostArray (0 ms) [ RUN ] MatrixTest/0.NonSequentialAccess [ OK ] MatrixTest/0.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/0.Holes [ OK ] MatrixTest/0.Holes (0 ms) [ RUN ] MatrixTest/0.BigBandedMatrix N13ConsensusCore11DenseMatrixE : 1000000 [ OK ] MatrixTest/0.BigBandedMatrix (7 ms) [ RUN ] MatrixTest/0.BigIrregularBandedMatrix [ OK ] MatrixTest/0.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/0.CopyTest [ OK ] MatrixTest/0.CopyTest (0 ms) [----------] 11 tests from MatrixTest/0 (12 ms total) [----------] 11 tests from MatrixTest/1, where TypeParam = ConsensusCore::SparseMatrix [ RUN ] MatrixTest/1.Basic [ OK ] MatrixTest/1.Basic (0 ms) [ RUN ] MatrixTest/1.Nullability [ OK ] MatrixTest/1.Nullability (0 ms) [ RUN ] MatrixTest/1.Ranges [ OK ] MatrixTest/1.Ranges (0 ms) [ RUN ] MatrixTest/1.IsColumnEmpty [ OK ] MatrixTest/1.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/1.SSE [ OK ] MatrixTest/1.SSE (0 ms) [ RUN ] MatrixTest/1.ToHostArray [ OK ] MatrixTest/1.ToHostArray (0 ms) [ RUN ] MatrixTest/1.NonSequentialAccess [ OK ] MatrixTest/1.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/1.Holes [ OK ] MatrixTest/1.Holes (0 ms) [ RUN ] MatrixTest/1.BigBandedMatrix N13ConsensusCore12SparseMatrixE : 1001976 [ OK ] MatrixTest/1.BigBandedMatrix (10 ms) [ RUN ] MatrixTest/1.BigIrregularBandedMatrix [ OK ] MatrixTest/1.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/1.CopyTest [ OK ] MatrixTest/1.CopyTest (0 ms) [----------] 11 tests from MatrixTest/1 (15 ms total) [----------] 5 tests from QvEvaluatorTest [ RUN ] QvEvaluatorTest.IncVsInc4 [ OK ] QvEvaluatorTest.IncVsInc4 (61 ms) [ RUN ] QvEvaluatorTest.DelVsDel4 [ OK ] QvEvaluatorTest.DelVsDel4 (66 ms) [ RUN ] QvEvaluatorTest.ExtraVsExtra4 [ OK ] QvEvaluatorTest.ExtraVsExtra4 (70 ms) [ RUN ] QvEvaluatorTest.MergeVsMerge4 [ OK ] QvEvaluatorTest.MergeVsMerge4 (51 ms) [ RUN ] QvEvaluatorTest.BadTagTest [ OK ] QvEvaluatorTest.BadTagTest (6 ms) [----------] 5 tests from QvEvaluatorTest (256 ms total) [----------] 3 tests from PairwiseAlignmentTests [ RUN ] PairwiseAlignmentTests.RepresentationTests [ OK ] PairwiseAlignmentTests.RepresentationTests (0 ms) [ RUN ] PairwiseAlignmentTests.GlobalAlignmentTests [ OK ] PairwiseAlignmentTests.GlobalAlignmentTests (0 ms) [ RUN ] PairwiseAlignmentTests.TargetPositionsInQueryTest [ OK ] PairwiseAlignmentTests.TargetPositionsInQueryTest (0 ms) [----------] 3 tests from PairwiseAlignmentTests (1 ms total) [----------] 2 tests from AffineAlignmentTests [ RUN ] AffineAlignmentTests.BasicTests [ OK ] AffineAlignmentTests.BasicTests (0 ms) [ RUN ] AffineAlignmentTests.LargeGapTest [ OK ] AffineAlignmentTests.LargeGapTest (15 ms) [----------] 2 tests from AffineAlignmentTests (17 ms total) [----------] 1 test from IupacAlignmentTests [ RUN ] IupacAlignmentTests.BasicTest [ OK ] IupacAlignmentTests.BasicTest (0 ms) [----------] 1 test from IupacAlignmentTests (0 ms total) [----------] 1 test from LinearAlignmentTests [ RUN ] LinearAlignmentTests.BasicTest [ OK ] LinearAlignmentTests.BasicTest (1 ms) [----------] 1 test from LinearAlignmentTests (1 ms total) [----------] 4 tests from MutationEnumerationTest [ RUN ] MutationEnumerationTest.TestAllMutations [ OK ] MutationEnumerationTest.TestAllMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueMutations [ OK ] MutationEnumerationTest.TestUniqueMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueNearbyMutations [ OK ] MutationEnumerationTest.TestUniqueNearbyMutations (2 ms) [ RUN ] MutationEnumerationTest.TestDinucleotideMutations [ OK ] MutationEnumerationTest.TestDinucleotideMutations (0 ms) [----------] 4 tests from MutationEnumerationTest (3 ms total) [----------] 7 tests from MutationTest [ RUN ] MutationTest.BasicTest [ OK ] MutationTest.BasicTest (0 ms) [ RUN ] MutationTest.DeleteTest [ OK ] MutationTest.DeleteTest (0 ms) [ RUN ] MutationTest.InsertTest [ OK ] MutationTest.InsertTest (0 ms) [ RUN ] MutationTest.ApplyMutationsTest [ OK ] MutationTest.ApplyMutationsTest (0 ms) [ RUN ] MutationTest.ApplyMutationsToSamePositionTest [ OK ] MutationTest.ApplyMutationsToSamePositionTest (0 ms) [ RUN ] MutationTest.MutationsToTranscript [ OK ] MutationTest.MutationsToTranscript (0 ms) [ RUN ] MutationTest.MutatedTemplatePositionsTest [ OK ] MutationTest.MutatedTemplatePositionsTest (0 ms) [----------] 7 tests from MutationTest (1 ms total) [----------] 4 tests from PoaGraph [ RUN ] PoaGraph.SmallBasicTest [ OK ] PoaGraph.SmallBasicTest (0 ms) [ RUN ] PoaGraph.SmallExtraTests [ OK ] PoaGraph.SmallExtraTests (0 ms) [ RUN ] PoaGraph.SmallMismatchTests [ OK ] PoaGraph.SmallMismatchTests (0 ms) [ RUN ] PoaGraph.SmallDeletionTests [ OK ] PoaGraph.SmallDeletionTests (0 ms) [----------] 4 tests from PoaGraph (1 ms total) [----------] 8 tests from PoaConsensus [ RUN ] PoaConsensus.TestSimple [ OK ] PoaConsensus.TestSimple (0 ms) [ RUN ] PoaConsensus.TestOverhangSecond [ OK ] PoaConsensus.TestOverhangSecond (0 ms) [ RUN ] PoaConsensus.SmallSemiglobalTest [ OK ] PoaConsensus.SmallSemiglobalTest (0 ms) [ RUN ] PoaConsensus.SmallTilingTest [ OK ] PoaConsensus.SmallTilingTest (0 ms) [ RUN ] PoaConsensus.TestVerboseGraphVizOutput [ OK ] PoaConsensus.TestVerboseGraphVizOutput (0 ms) [ RUN ] PoaConsensus.TestLocalStaggered dot -Tpng local-staggered.dot > local-staggered.png sh: 1: dot: not found [ OK ] PoaConsensus.TestLocalStaggered (9 ms) [ RUN ] PoaConsensus.TestLongInsert [ OK ] PoaConsensus.TestLongInsert (1 ms) [ RUN ] PoaConsensus.NondeterminismRegressionTest [ OK ] PoaConsensus.NondeterminismRegressionTest (888 ms) [----------] 8 tests from PoaConsensus (901 ms total) [----------] 3 tests from CoverageTests [ RUN ] CoverageTests.CoverageInWindowTest [ OK ] CoverageTests.CoverageInWindowTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest [ OK ] CoverageTests.CoveredIntervalsTest (1 ms) [ RUN ] CoverageTests.CoveredIntervalsTest2 [ OK ] CoverageTests.CoveredIntervalsTest2 (0 ms) [----------] 3 tests from CoverageTests (1 ms total) [----------] 1 test from QuiverConfigTableTests [ RUN ] QuiverConfigTableTests.IllegalChemistry [ OK ] QuiverConfigTableTests.IllegalChemistry (0 ms) [----------] 1 test from QuiverConfigTableTests (0 ms total) [----------] 3 tests from MutationOrientationTests [ RUN ] MutationOrientationTests.ReadScoresMutation1 [ OK ] MutationOrientationTests.ReadScoresMutation1 (1 ms) [ RUN ] MutationOrientationTests.ReadScoresMutation2 [ OK ] MutationOrientationTests.ReadScoresMutation2 (0 ms) [ RUN ] MutationOrientationTests.OrientedMutation [ OK ] MutationOrientationTests.OrientedMutation (0 ms) [----------] 3 tests from MutationOrientationTests (1 ms total) [----------] 11 tests from MultiReadMutationScorerTest/0, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MultiReadMutationScorerTest/0.Template [ OK ] MultiReadMutationScorerTest/0.Template (0 ms) [ RUN ] MultiReadMutationScorerTest/0.BasicTest [ OK ] MultiReadMutationScorerTest/0.BasicTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.ManyMutationTest [ OK ] MultiReadMutationScorerTest/0.ManyMutationTest (2 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyConstructorTest [ OK ] MultiReadMutationScorerTest/0.CopyConstructorTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ReverseStrandTest [ OK ] MultiReadMutationScorerTest/0.ReverseStrandTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning (0 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtEnd [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtEnd (0 ms) [ RUN ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 [ OK ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 (1 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyTest [ OK ] MultiReadMutationScorerTest/0.CopyTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds (0 ms) [----------] 11 tests from MultiReadMutationScorerTest/0 (8 ms total) [----------] 7 tests from RecursorTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/0.SmallMatchTest [ OK ] RecursorTest/0.SmallMatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMismatchTest [ OK ] RecursorTest/0.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMergeTest [ OK ] RecursorTest/0.SmallMergeTest (0 ms) [ RUN ] RecursorTest/0.MediumSizedTest [ OK ] RecursorTest/0.MediumSizedTest (3 ms) [ RUN ] RecursorTest/0.LinkTest [ OK ] RecursorTest/0.LinkTest (0 ms) [ RUN ] RecursorTest/0.ExtendAlphaTest [ OK ] RecursorTest/0.ExtendAlphaTest (1 ms) [ RUN ] RecursorTest/0.ExtendBetaTest [ OK ] RecursorTest/0.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/0 (4 ms total) [----------] 7 tests from RecursorTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/1.SmallMatchTest [ OK ] RecursorTest/1.SmallMatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMismatchTest [ OK ] RecursorTest/1.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMergeTest [ OK ] RecursorTest/1.SmallMergeTest (0 ms) [ RUN ] RecursorTest/1.MediumSizedTest [ OK ] RecursorTest/1.MediumSizedTest (2 ms) [ RUN ] RecursorTest/1.LinkTest [ OK ] RecursorTest/1.LinkTest (0 ms) [ RUN ] RecursorTest/1.ExtendAlphaTest [ OK ] RecursorTest/1.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/1.ExtendBetaTest [ OK ] RecursorTest/1.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/1 (4 ms total) [----------] 7 tests from RecursorTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/2.SmallMatchTest [ OK ] RecursorTest/2.SmallMatchTest (1 ms) [ RUN ] RecursorTest/2.SmallMismatchTest [ OK ] RecursorTest/2.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMergeTest [ OK ] RecursorTest/2.SmallMergeTest (0 ms) [ RUN ] RecursorTest/2.MediumSizedTest [ OK ] RecursorTest/2.MediumSizedTest (3 ms) [ RUN ] RecursorTest/2.LinkTest [ OK ] RecursorTest/2.LinkTest (0 ms) [ RUN ] RecursorTest/2.ExtendAlphaTest [ OK ] RecursorTest/2.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/2.ExtendBetaTest [ OK ] RecursorTest/2.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/2 (5 ms total) [----------] 7 tests from RecursorTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/3.SmallMatchTest [ OK ] RecursorTest/3.SmallMatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMismatchTest [ OK ] RecursorTest/3.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMergeTest [ OK ] RecursorTest/3.SmallMergeTest (0 ms) [ RUN ] RecursorTest/3.MediumSizedTest [ OK ] RecursorTest/3.MediumSizedTest (2 ms) [ RUN ] RecursorTest/3.LinkTest [ OK ] RecursorTest/3.LinkTest (0 ms) [ RUN ] RecursorTest/3.ExtendAlphaTest [ OK ] RecursorTest/3.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/3.ExtendBetaTest [ OK ] RecursorTest/3.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/3 (5 ms total) [----------] 5 tests from RecursorFuzzTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/0.AlphaBetaConcordance [ OK ] RecursorFuzzTest/0.AlphaBetaConcordance (87 ms) [ RUN ] RecursorFuzzTest/0.Alignment [ OK ] RecursorFuzzTest/0.Alignment (89 ms) [ RUN ] RecursorFuzzTest/0.LinkAlphaBeta [ OK ] RecursorFuzzTest/0.LinkAlphaBeta (99 ms) [ RUN ] RecursorFuzzTest/0.ExtendAlpha [ OK ] RecursorFuzzTest/0.ExtendAlpha (30 ms) [ RUN ] RecursorFuzzTest/0.ExtendBeta [ OK ] RecursorFuzzTest/0.ExtendBeta (31 ms) [----------] 5 tests from RecursorFuzzTest/0 (338 ms total) [----------] 5 tests from RecursorFuzzTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/1.AlphaBetaConcordance [ OK ] RecursorFuzzTest/1.AlphaBetaConcordance (67 ms) [ RUN ] RecursorFuzzTest/1.Alignment [ OK ] RecursorFuzzTest/1.Alignment (69 ms) [ RUN ] RecursorFuzzTest/1.LinkAlphaBeta [ OK ] RecursorFuzzTest/1.LinkAlphaBeta (69 ms) [ RUN ] RecursorFuzzTest/1.ExtendAlpha [ OK ] RecursorFuzzTest/1.ExtendAlpha (30 ms) [ RUN ] RecursorFuzzTest/1.ExtendBeta [ OK ] RecursorFuzzTest/1.ExtendBeta (30 ms) [----------] 5 tests from RecursorFuzzTest/1 (267 ms total) [----------] 5 tests from RecursorFuzzTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/2.AlphaBetaConcordance [ OK ] RecursorFuzzTest/2.AlphaBetaConcordance (97 ms) [ RUN ] RecursorFuzzTest/2.Alignment [ OK ] RecursorFuzzTest/2.Alignment (98 ms) [ RUN ] RecursorFuzzTest/2.LinkAlphaBeta [ OK ] RecursorFuzzTest/2.LinkAlphaBeta (159 ms) [ RUN ] RecursorFuzzTest/2.ExtendAlpha [ OK ] RecursorFuzzTest/2.ExtendAlpha (39 ms) [ RUN ] RecursorFuzzTest/2.ExtendBeta [ OK ] RecursorFuzzTest/2.ExtendBeta (39 ms) [----------] 5 tests from RecursorFuzzTest/2 (433 ms total) [----------] 5 tests from RecursorFuzzTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/3.AlphaBetaConcordance [ OK ] RecursorFuzzTest/3.AlphaBetaConcordance (121 ms) [ RUN ] RecursorFuzzTest/3.Alignment [ OK ] RecursorFuzzTest/3.Alignment (84 ms) [ RUN ] RecursorFuzzTest/3.LinkAlphaBeta [ OK ] RecursorFuzzTest/3.LinkAlphaBeta (81 ms) [ RUN ] RecursorFuzzTest/3.ExtendAlpha [ OK ] RecursorFuzzTest/3.ExtendAlpha (24 ms) [ RUN ] RecursorFuzzTest/3.ExtendBeta [ OK ] RecursorFuzzTest/3.ExtendBeta (25 ms) [----------] 5 tests from RecursorFuzzTest/3 (337 ms total) [----------] Global test environment tear-down [==========] 158 tests from 29 test cases ran. (2650 ms total) [ PASSED ] 158 tests. make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary-arch dh binary-arch --with python2,python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:184: /usr/bin/python setup.py install --root /«PKGBUILDDIR»/debian/python-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig3.0 PYTHON_INCLUDE = /usr/include/python2.7 NUMPY_INCLUDE = /usr/lib/python2.7/dist-packages/numpy/core/include DEBUG = CPP_ABI = c++98 make[1]: Entering directory '/«PKGBUILDDIR»' make -f make/Cpp.mk make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: '/«PKGBUILDDIR»/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/«PKGBUILDDIR»' make -f make/Python.mk make[2]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/build/Python SWIG_LIB=/usr/share/swig3.0 /usr/bin/swig -Wall -c++ -python -builtin -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -module ConsensusCore -o /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /«PKGBUILDDIR»/include/ConsensusCore/Feature.hpp:56: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Matrix/DenseMatrix.hpp:64: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Poa/PoaConsensus.hpp:60: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread -shared -Wl,-O1 -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -I /usr/include/python2.7 -I /usr/lib/python2.7/dist-packages/numpy/core/include /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx /«PKGBUILDDIR»/build/C++/libConsensusCore.a -o /«PKGBUILDDIR»/build/Python/_ConsensusCore.so make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' running install running install_lib running build_py copying build/Python/ConsensusCore.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build copying build/Python/_ConsensusCore.so -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build creating /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr creating /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr/lib creating /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr/lib/python2.7 creating /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr/lib/python2.7/dist-packages copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/_ConsensusCore.so -> /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr/lib/python2.7/dist-packages copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_2.7/build/ConsensusCore.py -> /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr/lib/python2.7/dist-packages byte-compiling /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr/lib/python2.7/dist-packages/ConsensusCore.py to ConsensusCore.pyc running install_egg_info running egg_info creating build/Python/ConsensusCore.egg-info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /«PKGBUILDDIR»/debian/python-pbconsensuscore/usr/lib/python2.7/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:184: /usr/bin/python3 setup.py install --root /«PKGBUILDDIR»/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig3.0 PYTHON_INCLUDE = /usr/include/python3.5m NUMPY_INCLUDE = /usr/lib/python3/dist-packages/numpy/core/include DEBUG = CPP_ABI = c++98 make[1]: Entering directory '/«PKGBUILDDIR»' make -f make/Cpp.mk make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: '/«PKGBUILDDIR»/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/«PKGBUILDDIR»' make -f make/Python.mk make[2]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/build/Python SWIG_LIB=/usr/share/swig3.0 /usr/bin/swig -Wall -c++ -python -builtin -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -module ConsensusCore -o /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /«PKGBUILDDIR»/include/ConsensusCore/Feature.hpp:56: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Matrix/DenseMatrix.hpp:64: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /«PKGBUILDDIR»/include/ConsensusCore/Poa/PoaConsensus.hpp:60: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -isystem /usr/include/ -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread -shared -Wl,-O1 -I/«PKGBUILDDIR»/include -I/«PKGBUILDDIR»/external -I /usr/include/python3.5m -I /usr/lib/python3/dist-packages/numpy/core/include /«PKGBUILDDIR»/build/Python/ConsensusCore_wrap.cxx /«PKGBUILDDIR»/build/C++/libConsensusCore.a -o /«PKGBUILDDIR»/build/Python/_ConsensusCore.so make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' running install running install_lib running build_py copying build/Python/ConsensusCore.py -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build copying build/Python/_ConsensusCore.so -> /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build creating /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr creating /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr/lib creating /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr/lib/python3.5 creating /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr/lib/python3.5/dist-packages copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/_ConsensusCore.so -> /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr/lib/python3.5/dist-packages copying /«PKGBUILDDIR»/.pybuild/pythonX.Y_3.5/build/ConsensusCore.py -> /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr/lib/python3.5/dist-packages byte-compiling /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr/lib/python3.5/dist-packages/ConsensusCore.py to ConsensusCore.cpython-35.pyc running install_egg_info running egg_info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /«PKGBUILDDIR»/debian/python3-pbconsensuscore/usr/lib/python3.5/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_python2 make[1]: Entering directory '/«PKGBUILDDIR»' dh_python2 I: dh_python2 fs:322: renaming _ConsensusCore.so to _ConsensusCore.i386-linux-gnu.so dh_numpy make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_python3 make[1]: Entering directory '/«PKGBUILDDIR»' dh_python3 I: dh_python3 fs:85: renaming debian/python3-pbconsensuscore/usr/lib/python3.5/dist-packages/_ConsensusCore.so to debian/python3-pbconsensuscore/usr/lib/python3.5/dist-packages/_ConsensusCore.cpython-35m-i386-linux-gnu.so dh_numpy3 make[1]: Leaving directory '/«PKGBUILDDIR»' dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: libconsensuscore-dev python-pbconsensuscore python3-pbconsensuscore dh_strip debug symbol extraction: packages to act on: libconsensuscore-dev python-pbconsensuscore python3-pbconsensuscore dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 libconsensuscore-dev has no unstripped objects, ignoring find: ‘/«PKGBUILDDIR»/debian/libconsensuscore-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /«PKGBUILDDIR»/debian/libconsensuscore-dev-dbgsym and no dbgdepends, ignoring /usr/bin/pkg_create_dbgsym: ignoring python* package: python-pbconsensuscore /usr/bin/pkg_create_dbgsym: ignoring python* package: python3-pbconsensuscore dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-pbconsensuscore/usr/lib/python2.7/dist-packages/_ConsensusCore.i386-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pbconsensuscore/usr/lib/python3/dist-packages/_ConsensusCore.cpython-35m-i386-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package libconsensuscore-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libconsensuscore-dev: unused substitution variable ${python3:Depends} dpkg-gencontrol: warning: package libconsensuscore-dev: unused substitution variable ${python:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package python-pbconsensuscore: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-pbconsensuscore: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package python-pbconsensuscore: unused substitution variable ${python3:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package python3-pbconsensuscore: unused substitution variable ${python:Depends} dpkg-gencontrol: warning: package python3-pbconsensuscore: unused substitution variable ${python3:Provides} dpkg-gencontrol: warning: package python3-pbconsensuscore: unused substitution variable ${python3:Versions} dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform i386: libconsensuscore-dev python-pbconsensuscore python3-pbconsensuscore dh_gencontrol debug symbol wrapper: packages to act on: libconsensuscore-dev python-pbconsensuscore python3-pbconsensuscore dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/libconsensuscore-dev-dbgsym, skipping package libconsensuscore-dev dh_gencontrol debug symbol wrapper: no debian/python-pbconsensuscore-dbgsym, skipping package python-pbconsensuscore dh_gencontrol debug symbol wrapper: no debian/python3-pbconsensuscore-dbgsym, skipping package python3-pbconsensuscore dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 INFO: pkgstriptranslations version 130 pkgstriptranslations: processing python3-pbconsensuscore (in debian/python3-pbconsensuscore); do_strip: , oemstrip: pkgstriptranslations: processing python-pbconsensuscore (in debian/python-pbconsensuscore); do_strip: , oemstrip: pkgstriptranslations: processing libconsensuscore-dev (in debian/libconsensuscore-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pbconsensuscore/DEBIAN/control, package python3-pbconsensuscore, directory debian/python3-pbconsensuscore INFO: pkgstripfiles: waiting for lock (python3-pbconsensuscore) ... pkgstripfiles: processing control file: debian/libconsensuscore-dev/DEBIAN/control, package libconsensuscore-dev, directory debian/libconsensuscore-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package libconsensuscore-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libconsensuscore-dev' in '../libconsensuscore-dev_1.0.2-1_i386.deb'. INFO: pkgstripfiles: waiting for lock (python3-pbconsensuscore) ... INFO: pkgstripfiles: waiting for lock (python3-pbconsensuscore) ... INFO: pkgstripfiles: waiting for lock (python3-pbconsensuscore) ... INFO: pkgstripfiles: waiting for lock (python3-pbconsensuscore) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-pbconsensuscore/DEBIAN/control, package python-pbconsensuscore, directory debian/python-pbconsensuscore pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-pbconsensuscore ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-pbconsensuscore' in '../python-pbconsensuscore_1.0.2-1_i386.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pbconsensuscore ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pbconsensuscore' in '../python3-pbconsensuscore_1.0.2-1_i386.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../consensuscore_1.0.2-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build consensuscore-1.0.2 dpkg-buildpackage: info: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20160704-1730 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ consensuscore_1.0.2-1_i386.changes: ─────────────────────────────────── Format: 1.8 Date: Sun, 03 Jul 2016 03:12:49 -0700 Source: consensuscore Binary: libconsensuscore-dev python-pbconsensuscore python3-pbconsensuscore Architecture: i386 Version: 1.0.2-1 Distribution: yakkety-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Afif Elghraoui Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 2 python3-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 3 Closes: 828837 Changes: consensuscore (1.0.2-1) unstable; urgency=medium . * Add binary package for C++ headers and static library (Closes: #828837) * Rename source package and change section * Imported Upstream version 1.0.2 (git28dbb19 - 2016-05-06) * Bump Standards-Version to 3.9.8 * Remove invalid architecture entries * Clean up d/rules and d/control * Update email address and copyright year * Make Python package descriptions consistent Checksums-Sha1: 938c8714b35077ef6d9cce7f99452ee1b6050d05 4092322 libconsensuscore-dev_1.0.2-1_i386.deb 6463972cf6c06fe7763ef6ecd939d8e217e39d55 617888 python-pbconsensuscore_1.0.2-1_i386.deb d257030b31c2092d743884dd8e067837216f46ee 618584 python3-pbconsensuscore_1.0.2-1_i386.deb Checksums-Sha256: 2cb38f83ff613efa24b1a3e83dd8304fb9dc1e03076604c6046c82ab7d577bfa 4092322 libconsensuscore-dev_1.0.2-1_i386.deb 81e26d1170fd4e14be2215bcaf0377cac6275763165b6dc75f4c1d93fd067b8c 617888 python-pbconsensuscore_1.0.2-1_i386.deb 8c0d3b292c8c164a98a9a45e87f8f2e263933f9d0dffb8926f1518fa17e8d0d4 618584 python3-pbconsensuscore_1.0.2-1_i386.deb Files: 6431b38105865834187d1e993cf71c2b 4092322 libdevel optional libconsensuscore-dev_1.0.2-1_i386.deb 1fcca943190b1042a5458187b0573012 617888 python optional python-pbconsensuscore_1.0.2-1_i386.deb 74b2d765c17b3da03aeec533f3514381 618584 python optional python3-pbconsensuscore_1.0.2-1_i386.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ libconsensuscore-dev_1.0.2-1_i386.deb ───────────────────────────────────── new debian package, version 2.0. size 4092322 bytes: control archive=2213 bytes. 808 bytes, 18 lines control 4237 bytes, 52 lines md5sums Package: libconsensuscore-dev Source: consensuscore Version: 1.0.2-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 24750 Section: libdevel Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- development files ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the header files and static library. drwxr-xr-x root/root 0 2016-07-03 10:12 ./ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/ drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/ drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/Align/ -rw-r--r-- root/root 3305 2016-05-06 17:25 ./usr/include/ConsensusCore/Align/AffineAlignment.hpp -rw-r--r-- root/root 2713 2016-05-06 17:25 ./usr/include/ConsensusCore/Align/AlignConfig.hpp -rw-r--r-- root/root 2468 2016-05-06 17:25 ./usr/include/ConsensusCore/Align/LinearAlignment.hpp -rw-r--r-- root/root 4044 2016-05-06 17:25 ./usr/include/ConsensusCore/Align/PairwiseAlignment.hpp -rw-r--r-- root/root 1989 2016-05-06 17:25 ./usr/include/ConsensusCore/Checksum.hpp -rw-r--r-- root/root 2813 2016-05-06 17:25 ./usr/include/ConsensusCore/Coverage.hpp drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/Edna/ -rw-r--r-- root/root 2716 2016-05-06 17:25 ./usr/include/ConsensusCore/Edna/EdnaConfig.hpp -rw-r--r-- root/root 2380 2016-05-06 17:25 ./usr/include/ConsensusCore/Edna/EdnaCounts.hpp -rw-r--r-- root/root 9283 2016-05-06 17:25 ./usr/include/ConsensusCore/Edna/EdnaEvaluator.hpp -rw-r--r-- root/root 5127 2016-05-06 17:25 ./usr/include/ConsensusCore/Feature.hpp -rw-r--r-- root/root 4278 2016-05-06 17:25 ./usr/include/ConsensusCore/Features.hpp -rw-r--r-- root/root 3563 2016-05-06 17:25 ./usr/include/ConsensusCore/Interval.hpp -rw-r--r-- root/root 2724 2016-05-06 17:25 ./usr/include/ConsensusCore/LFloat.hpp -rw-r--r-- root/root 2325 2016-05-06 17:25 ./usr/include/ConsensusCore/Logging.hpp drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/ -rw-r--r-- root/root 2379 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/AbstractMatrix.hpp -rw-r--r-- root/root 5120 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/DenseMatrix-inl.hpp -rw-r--r-- root/root 4515 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/DenseMatrix.hpp -rw-r--r-- root/root 4994 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/SparseMatrix-inl.hpp -rw-r--r-- root/root 3831 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/SparseMatrix.hpp -rw-r--r-- root/root 8693 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/SparseVector-inl.hpp -rw-r--r-- root/root 3508 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/SparseVector.hpp -rw-r--r-- root/root 2010 2016-05-06 17:25 ./usr/include/ConsensusCore/Matrix/VectorL.hpp -rw-r--r-- root/root 4971 2016-05-06 17:25 ./usr/include/ConsensusCore/Mutation-inl.hpp -rw-r--r-- root/root 4443 2016-05-06 17:25 ./usr/include/ConsensusCore/Mutation.hpp drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/Poa/ -rw-r--r-- root/root 3856 2016-05-06 17:25 ./usr/include/ConsensusCore/Poa/PoaConsensus.hpp -rw-r--r-- root/root 4049 2016-05-06 17:25 ./usr/include/ConsensusCore/Poa/PoaGraph.hpp -rw-r--r-- root/root 1715 2016-05-06 17:25 ./usr/include/ConsensusCore/Poa/RangeFinder.hpp drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/ -rw-r--r-- root/root 2391 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/Diploid.hpp -rw-r--r-- root/root 10037 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp -rw-r--r-- root/root 3059 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/MutationEnumerator-inl.hpp -rw-r--r-- root/root 3801 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/MutationEnumerator.hpp -rw-r--r-- root/root 3999 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/MutationScorer.hpp -rw-r--r-- root/root 8358 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/QuiverConfig.hpp -rw-r--r-- root/root 2799 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/QuiverConsensus.hpp -rw-r--r-- root/root 10122 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/QvEvaluator.hpp -rw-r--r-- root/root 2827 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/ReadScorer.hpp -rw-r--r-- root/root 3677 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/SimpleRecursor.hpp -rw-r--r-- root/root 4017 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/SseRecursor.hpp drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/detail/ -rw-r--r-- root/root 2808 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/detail/Combiner.hpp -rw-r--r-- root/root 3756 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/detail/RecursorBase-inl.hpp -rw-r--r-- root/root 4651 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/detail/RecursorBase.hpp -rw-r--r-- root/root 3232 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/detail/SseMath.hpp -rw-r--r-- root/root 25077 2016-05-06 17:25 ./usr/include/ConsensusCore/Quiver/detail/sse_mathfun.h -rw-r--r-- root/root 2878 2016-05-06 17:25 ./usr/include/ConsensusCore/Read.hpp -rw-r--r-- root/root 2071 2016-05-06 17:25 ./usr/include/ConsensusCore/Sequence.hpp drwxr-xr-x root/root 0 2016-05-06 17:25 ./usr/include/ConsensusCore/Statistics/ -rw-r--r-- root/root 2179 2016-05-06 17:25 ./usr/include/ConsensusCore/Statistics/Binomial.hpp -rw-r--r-- root/root 4832 2016-05-06 17:25 ./usr/include/ConsensusCore/Types.hpp -rw-r--r-- root/root 2901 2016-05-06 17:25 ./usr/include/ConsensusCore/Utils.hpp -rw-r--r-- root/root 2250 2016-05-06 17:25 ./usr/include/ConsensusCore/Version.hpp drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 25081932 2016-07-03 10:12 ./usr/lib/i386-linux-gnu/libConsensusCore.a drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/doc/libconsensuscore-dev/ -rw-r--r-- root/root 521 2016-07-03 10:12 ./usr/share/doc/libconsensuscore-dev/changelog.Debian.gz -rw-r--r-- root/root 5835 2016-07-03 07:37 ./usr/share/doc/libconsensuscore-dev/copyright python-pbconsensuscore_1.0.2-1_i386.deb ─────────────────────────────────────── new debian package, version 2.0. size 617888 bytes: control archive=1219 bytes. 980 bytes, 19 lines control 683 bytes, 7 lines md5sums 170 bytes, 9 lines * postinst #!/bin/sh 279 bytes, 14 lines * prerm #!/bin/sh Package: python-pbconsensuscore Source: consensuscore Version: 1.0.2-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2678 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.0), libstdc++6 (>= 5.2), python (<< 2.8), python (>= 2.7~), python-numpy (>= 1:1.10.0~b1), python-numpy-abi9, python:any (<< 2.8), python:any (>= 2.7.5-5~) Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- Python 2 ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the Python2 bindings. drwxr-xr-x root/root 0 2016-07-03 10:12 ./ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/python2.7/dist-packages/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/python2.7/dist-packages/ConsensusCore-1.0.2.egg-info/ -rw-r--r-- root/root 1985 2016-07-03 10:12 ./usr/lib/python2.7/dist-packages/ConsensusCore-1.0.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2016-07-03 10:12 ./usr/lib/python2.7/dist-packages/ConsensusCore-1.0.2.egg-info/dependency_links.txt -rw-r--r-- root/root 15 2016-07-03 10:12 ./usr/lib/python2.7/dist-packages/ConsensusCore-1.0.2.egg-info/top_level.txt -rw-r--r-- root/root 2690 2016-07-03 10:12 ./usr/lib/python2.7/dist-packages/ConsensusCore.py -rw-r--r-- root/root 2715140 2016-07-03 10:12 ./usr/lib/python2.7/dist-packages/_ConsensusCore.i386-linux-gnu.so drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/doc/python-pbconsensuscore/ -rw-r--r-- root/root 521 2016-07-03 10:12 ./usr/share/doc/python-pbconsensuscore/changelog.Debian.gz -rw-r--r-- root/root 5835 2016-07-03 07:37 ./usr/share/doc/python-pbconsensuscore/copyright python3-pbconsensuscore_1.0.2-1_i386.deb ──────────────────────────────────────── new debian package, version 2.0. size 618584 bytes: control archive=1300 bytes. 965 bytes, 19 lines control 687 bytes, 7 lines md5sums 173 bytes, 9 lines * postinst #!/bin/sh 419 bytes, 12 lines * prerm #!/bin/sh Package: python3-pbconsensuscore Source: consensuscore Version: 1.0.2-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2678 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.0), libstdc++6 (>= 5.2), python3 (<< 3.6), python3 (>= 3.5~), python3-numpy (>= 1:1.10.0~b1), python3-numpy-abi9, python3:any (>= 3.3.2-2~) Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- Python 3 ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the Python3 bindings. drwxr-xr-x root/root 0 2016-07-03 10:12 ./ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/python3/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/ -rw-r--r-- root/root 1985 2016-07-03 10:12 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2016-07-03 10:12 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/dependency_links.txt -rw-r--r-- root/root 15 2016-07-03 10:12 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/top_level.txt -rw-r--r-- root/root 2690 2016-07-03 10:12 ./usr/lib/python3/dist-packages/ConsensusCore.py -rw-r--r-- root/root 2714948 2016-07-03 10:12 ./usr/lib/python3/dist-packages/_ConsensusCore.cpython-35m-i386-linux-gnu.so drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-07-03 10:12 ./usr/share/doc/python3-pbconsensuscore/ -rw-r--r-- root/root 521 2016-07-03 10:12 ./usr/share/doc/python3-pbconsensuscore/changelog.Debian.gz -rw-r--r-- root/root 5835 2016-07-03 07:37 ./usr/share/doc/python3-pbconsensuscore/copyright ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: i386 Build-Space: 181976 Build-Time: 475 Distribution: yakkety-proposed Host Architecture: i386 Install-Time: 52 Job: consensuscore_1.0.2-1.dsc Machine Architecture: amd64 Package: consensuscore Package-Time: 528 Source-Version: 1.0.2-1 Space: 181976 Status: successful Version: 1.0.2-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20160704-1730 Build needed 00:08:48, 181976k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-10316924'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-10316924/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-10316924'] Unmounting chroot for build PACKAGEBUILD-10316924... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-10316924'] Removing build PACKAGEBUILD-10316924