https://launchpad.net/ubuntu/+source/consensuscore/1.1.1+dfsg-4build2/+build/26950734 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-092 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:22 UTC 2023 x86_64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 2 Nov 08:54:21 ntpdate[1955]: adjust time server 10.131.248.1 offset 0.003918 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26950734 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-26950734 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26950734 Starting target for build PACKAGEBUILD-26950734 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26950734 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26950734 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26950734 Updating target for build PACKAGEBUILD-26950734 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1406 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [14.8 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6003 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [126 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [50.4 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [624 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [252 kB] Fetched 24.3 MB in 3s (8983 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash-completion binutils binutils-common binutils-x86-64-linux-gnu cpp-13 debianutils diffutils dpkg dpkg-dev g++-13 gcc-13 gcc-13-base grep libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-13-dev libgcc-s1 libgnutls30 libgomp1 libgprofng0 libhwasan0 libidn2-0 libitm1 liblsan0 liblzma5 libncursesw6 libnsl-dev libnsl2 libpng16-16 libquadmath0 libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtsan2 libubsan1 libudev1 libxxhash0 libzstd1 mawk ncurses-base ncurses-bin openssl optipng systemd systemd-dev systemd-sysv xz-utils 74 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 89.1 MB of archives. After this operation, 1802 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6-dev amd64 2.38-3ubuntu1 [2114 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-dev-bin amd64 2.38-3ubuntu1 [20.3 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3 [41.3 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 13.2.0-6ubuntu1 [48.1 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-6ubuntu1 [44.3 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-s1 amd64 13.2.0-6ubuntu1 [62.4 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 13.2.0-6ubuntu1 [142 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 13.2.0-6ubuntu1 [29.3 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 13.2.0-6ubuntu1 [10.4 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 13.2.0-6ubuntu1 [2835 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 13.2.0-6ubuntu1 [1203 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 13.2.0-6ubuntu1 [2606 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 13.2.0-6ubuntu1 [1105 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 13.2.0-6ubuntu1 [1262 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 13.2.0-6ubuntu1 [153 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-6ubuntu1 [12.1 MB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-6ubuntu1 [2351 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-6ubuntu1 [2686 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-6ubuntu1 [21.5 MB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-6ubuntu1 [10.7 MB] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++6 amd64 13.2.0-6ubuntu1 [771 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libctf-nobfd0 amd64 2.41-6ubuntu1 [96.4 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgprofng0 amd64 2.41-6ubuntu1 [847 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libctf0 amd64 2.41-6ubuntu1 [94.1 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsframe1 amd64 2.41-6ubuntu1 [14.6 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libbinutils amd64 2.41-6ubuntu1 [563 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils-common amd64 2.41-6ubuntu1 [248 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils amd64 2.41-6ubuntu1 [17.9 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.41-6ubuntu1 [2468 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc6 amd64 2.38-3ubuntu1 [3248 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu4 [73.7 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.14 [89.0 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblzma5 amd64 5.4.4-0.1 [127 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapparmor1 amd64 4.0.0~alpha2-0ubuntu6 [47.6 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.1-1build1 [5510 B] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcap-ng0 amd64 0.8.3-1build3 [15.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.1-1build1 [46.5 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libselinux1 amd64 3.5-1build1 [78.4 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libssl3 amd64 3.0.10-1ubuntu2.1 [1930 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-sysv amd64 253.5-1ubuntu7 [11.5 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 systemd amd64 253.5-1ubuntu7 [3060 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd-shared amd64 253.5-1ubuntu7 [1871 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd0 amd64 253.5-1ubuntu7 [407 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libudev1 amd64 253.5-1ubuntu7 [159 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0 amd64 2.7.6 [948 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dpkg amd64 1.22.1ubuntu1 [1386 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-3 [161 kB] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 ncurses-bin amd64 6.4+20231016-1 [186 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.2 [51.2 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libc-bin amd64 2.38-3ubuntu1 [680 kB] Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 ncurses-base all 6.4+20231016-1 [24.7 kB] Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt amd64 2.7.6 [1373 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt-utils amd64 2.7.6 [216 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2 [537 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.4-1build1 [64.3 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgnutls30 amd64 3.8.1-4ubuntu3 [987 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsemanage-common all 3.5-1build1 [9982 B] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsemanage2 amd64 3.5-1build1 [92.9 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libncursesw6 amd64 6.4+20231016-1 [147 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libtinfo6 amd64 6.4+20231016-1 [107 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20230808-1 [125 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4 [21.4 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsqlite3-0 amd64 3.43.2-1 [679 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 openssl amd64 3.0.10-1ubuntu2.1 [1188 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpng16-16 amd64 1.6.40-2 [186 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 xz-utils amd64 5.4.4-0.1 [268 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 dpkg-dev all 1.22.1ubuntu1 [1148 kB] Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdpkg-perl all 1.22.1ubuntu1 [285 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.7-3 [83.3 kB] Preconfiguring packages ... 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Setting up libstdc++-13-dev:amd64 (13.2.0-6ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.41-6ubuntu1) ... Setting up systemd-sysv (253.5-1ubuntu7) ... Setting up binutils (2.41-6ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu1) ... Setting up gcc-13 (13.2.0-6ubuntu1) ... Setting up g++-13 (13.2.0-6ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26950734 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-26950734 --arch=amd64 --dist=noble-proposed --nolog -A consensuscore_1.1.1+dfsg-4build2.dsc Initiating build PACKAGEBUILD-26950734 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:22 UTC 2023 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-092.buildd +==============================================================================+ | consensuscore 1.1.1+dfsg-4build2 (amd64) Thu, 02 Nov 2023 08:54:41 +0000 | +==============================================================================+ Package: consensuscore Version: 1.1.1+dfsg-4build2 Source Version: 1.1.1+dfsg-4build2 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26950734/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/consensuscore-bWeKsG/resolver-Bdjkvs' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- consensuscore_1.1.1+dfsg-4build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/consensuscore-bWeKsG/consensuscore-1.1.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/consensuscore-bWeKsG' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, libboost-dev, swig, python3-setuptools, python3-all-dev, python3-numpy, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, libboost-dev, swig, python3-setuptools, python3-all-dev, python3-numpy, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [418 B] Get:5 copy:/<>/apt_archive ./ Packages [499 B] Fetched 1874 B in 0s (172 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libboost-dev libboost1.74-dev libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal swig swig4.0 zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv gfortran python3-pytest python-setuptools-doc python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc swig-doc swig-examples swig4.0-examples swig4.0-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libboost-dev libboost1.74-dev libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libpython3.12 libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources python3-setuptools python3.11 python3.11-dev python3.11-minimal python3.12 python3.12-dev python3.12-minimal sbuild-build-depends-main-dummy swig swig4.0 zlib1g-dev 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 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libpython3.12-stdlib amd64 3.12.0-1 [2012 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12 amd64 3.12.0-1 [2353 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12-dev amd64 3.12.0-1 [5514 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpython3-all-dev amd64 3.11.4-5ubuntu1 [916 B] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 python3.12 amd64 3.12.0-1 [629 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-all amd64 3.11.4-5ubuntu1 [910 B] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 python3.11-dev amd64 3.11.6-3 [508 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-dev amd64 3.11.4-5ubuntu1 [26.8 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 python3.12-dev amd64 3.12.0-1 [570 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-all-dev amd64 3.11.4-5ubuntu1 [920 B] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-numpy amd64 1:1.24.2-1ubuntu1 [7141 kB] Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 swig4.0 amd64 4.1.0-0.3 [1171 kB] Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 swig all 4.1.0-0.3 [5990 B] Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 dh-exec amd64 0.28 [24.8 kB] Preconfiguring packages ... 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Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up libpython3-dev:amd64 (3.11.4-5ubuntu1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3.11-dev (3.11.6-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3-all (3.11.4-5ubuntu1) ... Setting up libpython3.12-dev:amd64 (3.12.0-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython3-all-dev:amd64 (3.11.4-5ubuntu1) ... Setting up python3-dev (3.11.4-5ubuntu1) ... Setting up python3.12-dev (3.12.0-1) ... Setting up python3-numpy (1:1.24.2-1ubuntu1) ... Setting up dh-python (6.20231025) ... Setting up python3-all-dev (3.11.4-5ubuntu1) ... Setting up debhelper (13.11.7ubuntu1) ... Setting up dh-exec (0.28) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (253.5-1ubuntu7) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64 any-i386) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:22 UTC 2023 amd64 (x86_64) Toolchain package versions: binutils_2.41-6ubuntu1 dpkg-dev_1.22.1ubuntu1 g++-13_13.2.0-6ubuntu1 gcc-13_13.2.0-6ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-6ubuntu1 libstdc++6_13.2.0-6ubuntu1 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.6 apt-utils_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13build1 autotools-dev_20220109.1 base-files_13ubuntu4 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groff-base_1.23.0-3 gzip_1.12-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2ubuntu1 init-system-helpers_1.65.2ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-3ubuntu1 libacl1_2.3.1-3 libapparmor1_4.0.0~alpha2-0ubuntu6 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4 libasan8_13.2.0-6ubuntu1 libassuan0_2.5.6-1 libatomic1_13.2.0-6ubuntu1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1build1 libaudit1_1:3.1.1-1build1 libbinutils_2.41-6ubuntu1 libblas3_3.11.0-2build1 libblkid1_2.39.1-4ubuntu2 libboost-dev_1.74.0.3ubuntu7 libboost1.74-dev_1.74.0+ds1-23ubuntu2 libbz2-1.0_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcap-ng0_0.8.3-1build3 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-6ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu3 libctf-nobfd0_2.41-6ubuntu1 libctf0_2.41-6ubuntu1 libdb5.3_5.3.28+dfsg2-2 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python3.11_3.11.6-3 python3.11-dev_3.11.6-3 python3.11-minimal_3.11.6-3 python3.12_3.12.0-1 python3.12-dev_3.12.0-1 python3.12-minimal_3.12.0-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 swig_4.1.0-0.3 swig4.0_4.1.0-0.3 systemd_253.5-1ubuntu7 systemd-dev_253.5-1ubuntu7 systemd-sysv_253.5-1ubuntu7 sysvinit-utils_3.07-1ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.39.1-4ubuntu2 uuid-runtime_2.39.1-4ubuntu2 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu5 zlib1g-dev_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: consensuscore Binary: libconsensuscore-dev, python3-pbconsensuscore Architecture: any-amd64 any-i386 Version: 1.1.1+dfsg-4build2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/ConsensusCore Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/consensuscore Vcs-Git: https://salsa.debian.org/med-team/consensuscore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, libboost-dev, swig, python3-setuptools, python3-all-dev, python3-numpy Package-List: libconsensuscore-dev deb libdevel optional arch=any-amd64,any-i386 python3-pbconsensuscore deb python optional arch=any-amd64,any-i386 Checksums-Sha1: 06118ce273ef10180336ab071fd86dc60aea7168 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 62a4a44b433e73d94f34bb870ba3f039b8b06aba 9200 consensuscore_1.1.1+dfsg-4build2.debian.tar.xz Checksums-Sha256: 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 363936 consensuscore_1.1.1+dfsg.orig.tar.xz fb5154016eae29edefcd5078578cdb89b48cd9333c0882bae4d853e8e9d75a9e 9200 consensuscore_1.1.1+dfsg-4build2.debian.tar.xz Files: 17991299008d1c01e25ce3984b7fe7bd 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 4f35b3ad7eb72b22652c682c5323a9c3 9200 consensuscore_1.1.1+dfsg-4build2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE1WVxuIqLuvFAv2PWvX6qYHePpvUFAmVDYxAQHGRva29AdWJ1 bnR1LmNvbQAKCRC9fqpgd4+m9cSnD/9eHGayaZJuFyOYa4wVkgh1/u5eCT5vUfzt zPwy29FLpUFyysFzxn0NhB0h4rvp+Yxf4CnEgqtiWWqgK2ju+aCJhZ5Hz2a6uJxf tmllhYJKWPO1vXeGUxxTTv2tEnh6/gfHH8mPHPaQ/Bh6pYZu8A9+lyImknZaZsGd mlTklaSOFWvpspABZl8nNAwcJSZs0GjSLeZ3XII6Kuyd+UTaZdYiDIs0d1G62v27 BhvmQeFWVn0QHf3DbEaq6ItBFZ6ehgbW2c0pe7fjE2uRHWLC4r+7yGDufo6RvxK4 aGrZrRZgFC4FNhHYS5hb6prNGqkRIMrgkU7fYf4a+ntxl4NTlOxUTJXr3D0CAtdF 60pB3PfAeXnlH08VhhbxAJv97pJYT1gqrE4FtwGlmrfz3jzR3Fg8njgSudrzgT7g nToy6Xx/cqL+o/epKTFedfsgp17k0qNsLezc4pjuT8A6xaeSpiImnO+6bmjQoXMu meK2ojC2LvgW1GcE530IjZs7ouIV+himesY72ozy4lQ8nbgfN8Aj+D/zrASpBMiw 30rkPEikMNgwqTy0wl2hp3sknfC8NXLPqvhBRrADr4i3YGTSanWbGjuFXQpMaoiB uMDiNL/Y/q4TnH7obW1ON9oPB2qdtHZs8nRjpZBShw2jGdFeT4XKahRoUM8NS5sF 6fWvmfd9RQ== =GbJO -----END PGP SIGNATURE----- gpgv: Signature made Thu Nov 2 08:51:28 2023 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./consensuscore_1.1.1+dfsg-4build2.dsc: no acceptable signature found dpkg-source: info: extracting consensuscore in /<> dpkg-source: info: unpacking consensuscore_1.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking consensuscore_1.1.1+dfsg-4build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying check_boost_version.patch dpkg-source: info: applying sequence_setuptools.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26950734 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26950734 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26950734 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package consensuscore dpkg-buildpackage: info: source version 1.1.1+dfsg-4build2 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. dh_auto_clean -O--buildsystem=pybuild I: pybuild base:310: python3.12 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/<>/.pybuild/cpython3_3.12_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:310: python3.11 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/<>/.pybuild/cpython3_3.11_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:310: python3.12 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config I: pybuild base:310: python3.11 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:310: /usr/bin/python3.12 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig4.0 PYTHON_INCLUDE = /usr/include/python3.12 NUMPY_INCLUDE = /usr/lib/python3/dist-packages/numpy/core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/<>' make -f make/Cpp.mk -j8 make[2]: Entering directory '/<>' mkdir -p /<>/build/C++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Feature.cpp -o /<>/build/C++/Feature.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AffineAlignment.cpp -o /<>/build/C++/AffineAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Align/LinearAlignment.cpp -o /<>/build/C++/LinearAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Align/PairwiseAlignment.cpp -o /<>/build/C++/PairwiseAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AlignConfig.cpp -o /<>/build/C++/AlignConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/SparseMatrix.cpp -o /<>/build/C++/SparseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/DenseMatrix.cpp -o /<>/build/C++/DenseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Version.cpp -o /<>/build/C++/Version.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/AlignConfig.o -MM src/C++/Align/AlignConfig.cpp > /<>/build/C++/AlignConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Statistics/Binomial.cpp -o /<>/build/C++/Binomial.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/SparseMatrix.o -MM src/C++/Matrix/SparseMatrix.cpp > /<>/build/C++/SparseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Mutation.cpp -o /<>/build/C++/Mutation.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Feature.o -MM src/C++/Feature.cpp > /<>/build/C++/Feature.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/DenseMatrix.o -MM src/C++/Matrix/DenseMatrix.cpp > /<>/build/C++/DenseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/RangeFinder.cpp -o /<>/build/C++/RangeFinder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/LinearAlignment.o -MM src/C++/Align/LinearAlignment.cpp > /<>/build/C++/LinearAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphTraversals.cpp -o /<>/build/C++/PoaGraphTraversals.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/AffineAlignment.o -MM src/C++/Align/AffineAlignment.cpp > /<>/build/C++/AffineAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/PairwiseAlignment.o -MM src/C++/Align/PairwiseAlignment.cpp > /<>/build/C++/PairwiseAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaConsensus.cpp -o /<>/build/C++/PoaConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphImpl.cpp -o /<>/build/C++/PoaGraphImpl.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraph.cpp -o /<>/build/C++/PoaGraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Version.o -MM src/C++/Version.cpp > /<>/build/C++/Version.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SseRecursor.cpp -o /<>/build/C++/SseRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/PoaConsensus.o -MM src/C++/Poa/PoaConsensus.cpp > /<>/build/C++/PoaConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/Diploid.cpp -o /<>/build/C++/Diploid.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/PoaGraph.o -MM src/C++/Poa/PoaGraph.cpp > /<>/build/C++/PoaGraph.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationEnumerator.cpp -o /<>/build/C++/MutationEnumerator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Binomial.o -MM src/C++/Statistics/Binomial.cpp > /<>/build/C++/Binomial.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Diploid.o -MM src/C++/Quiver/Diploid.cpp > /<>/build/C++/Diploid.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/ReadScorer.cpp -o /<>/build/C++/ReadScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MultiReadMutationScorer.cpp -o /<>/build/C++/MultiReadMutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/MutationEnumerator.o -MM src/C++/Quiver/MutationEnumerator.cpp > /<>/build/C++/MutationEnumerator.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/detail/RecursorBase.cpp -o /<>/build/C++/RecursorBase.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Mutation.o -MM src/C++/Mutation.cpp > /<>/build/C++/Mutation.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/RangeFinder.o -MM src/C++/Poa/RangeFinder.cpp > /<>/build/C++/RangeFinder.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConfig.cpp -o /<>/build/C++/QuiverConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/ReadScorer.o -MM src/C++/Quiver/ReadScorer.cpp > /<>/build/C++/ReadScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConsensus.cpp -o /<>/build/C++/QuiverConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationScorer.cpp -o /<>/build/C++/MutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/QuiverConfig.o -MM src/C++/Quiver/QuiverConfig.cpp > /<>/build/C++/QuiverConfig.d src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:190:16: required from here src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:191:16: required from here src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:192:16: required from here src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:193:16: required from here src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:194:16: required from here src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:195:16: required from here src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::EdnaEvaluator]’: src/C++/Quiver/MutationScorer.cpp:196:16: required from here src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SimpleRecursor.cpp -o /<>/build/C++/SimpleRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/PoaGraphTraversals.o -MM src/C++/Poa/PoaGraphTraversals.cpp > /<>/build/C++/PoaGraphTraversals.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Edna/EdnaCounts.cpp -o /<>/build/C++/EdnaCounts.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/RecursorBase.o -MM src/C++/Quiver/detail/RecursorBase.cpp > /<>/build/C++/RecursorBase.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Sequence.cpp -o /<>/build/C++/Sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Sequence.o -MM src/C++/Sequence.cpp > /<>/build/C++/Sequence.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Logging/Logging.cpp -o /<>/build/C++/Logging.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Logging.o -MM src/C++/Logging/Logging.cpp > /<>/build/C++/Logging.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Checksum.cpp -o /<>/build/C++/Checksum.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/EdnaCounts.o -MM src/C++/Edna/EdnaCounts.cpp > /<>/build/C++/EdnaCounts.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Coverage.cpp -o /<>/build/C++/Coverage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/MultiReadMutationScorer.o -MM src/C++/Quiver/MultiReadMutationScorer.cpp > /<>/build/C++/MultiReadMutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Utils.cpp -o /<>/build/C++/Utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Coverage.o -MM src/C++/Coverage.cpp > /<>/build/C++/Coverage.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Read.cpp -o /<>/build/C++/Read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/MutationScorer.o -MM src/C++/Quiver/MutationScorer.cpp > /<>/build/C++/MutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Utils.o -MM src/C++/Utils.cpp > /<>/build/C++/Utils.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/QuiverConsensus.o -MM src/C++/Quiver/QuiverConsensus.cpp > /<>/build/C++/QuiverConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -c src/C++/Features.cpp -o /<>/build/C++/Features.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Features.o -MM src/C++/Features.cpp > /<>/build/C++/Features.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Checksum.o -MM src/C++/Checksum.cpp > /<>/build/C++/Checksum.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/Read.o -MM src/C++/Read.cpp > /<>/build/C++/Read.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/SimpleRecursor.o -MM src/C++/Quiver/SimpleRecursor.cpp > /<>/build/C++/SimpleRecursor.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/PoaGraphImpl.o -MM src/C++/Poa/PoaGraphImpl.cpp > /<>/build/C++/PoaGraphImpl.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -MT /<>/build/C++/SseRecursor.o -MM src/C++/Quiver/SseRecursor.cpp > /<>/build/C++/SseRecursor.d ar crs /<>/build/C++/libConsensusCore.a /<>/build/C++/Feature.o /<>/build/C++/AffineAlignment.o /<>/build/C++/LinearAlignment.o /<>/build/C++/PairwiseAlignment.o /<>/build/C++/AlignConfig.o /<>/build/C++/SparseMatrix.o /<>/build/C++/DenseMatrix.o /<>/build/C++/Version.o /<>/build/C++/Binomial.o /<>/build/C++/Mutation.o /<>/build/C++/RangeFinder.o /<>/build/C++/PoaGraphTraversals.o /<>/build/C++/PoaConsensus.o /<>/build/C++/PoaGraphImpl.o /<>/build/C++/PoaGraph.o /<>/build/C++/SseRecursor.o /<>/build/C++/Diploid.o /<>/build/C++/MutationEnumerator.o /<>/build/C++/ReadScorer.o /<>/build/C++/MultiReadMutationScorer.o /<>/build/C++/RecursorBase.o /<>/build/C++/QuiverConfig.o /<>/build/C++/QuiverConsensus.o /<>/build/C++/MutationScorer.o /<>/build/C++/SimpleRecursor.o /<>/build/C++/EdnaCounts.o /<>/build/C++/Sequence.o /<>/build/C++/Logging.o /<>/build/C++/Checksum.o /<>/build/C++/Coverage.o /<>/build/C++/Utils.o /<>/build/C++/Read.o /<>/build/C++/Features.o touch /<>/build/C++/libConsensusCore.a make[2]: Leaving directory '/<>' make -f make/Python.mk make[2]: Entering directory '/<>' mkdir -p /<>/build/Python SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig -Wall -c++ -python -builtin -I/<>/include -I/<>/external -module ConsensusCore -o /<>/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /<>/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /<>/include/ConsensusCore/Matrix/DenseMatrix.hpp:27: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /<>/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/<>/include -I/<>/external -I /usr/include/python3.12 -I /usr/lib/python3/dist-packages/numpy/core/include /<>/build/Python/ConsensusCore_wrap.cxx /<>/build/C++/libConsensusCore.a -o /<>/build/Python/_ConsensusCore.so make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' I: pybuild base:310: /usr/bin/python3 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig4.0 PYTHON_INCLUDE = /usr/include/python3.11 NUMPY_INCLUDE = /usr/lib/python3/dist-packages/numpy/core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/<>' make -f make/Cpp.mk -j8 make[2]: Entering directory '/<>' make[2]: '/<>/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/<>' make -f make/Python.mk make[2]: Entering directory '/<>' mkdir -p /<>/build/Python SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig -Wall -c++ -python -builtin -I/<>/include -I/<>/external -module ConsensusCore -o /<>/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /<>/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /<>/include/ConsensusCore/Matrix/DenseMatrix.hpp:27: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /<>/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/<>/include -I/<>/external -I /usr/include/python3.11 -I /usr/lib/python3/dist-packages/numpy/core/include /<>/build/Python/ConsensusCore_wrap.cxx /<>/build/C++/libConsensusCore.a -o /<>/build/Python/_ConsensusCore.so make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' /usr/bin/make test make[2]: Entering directory '/<>' /usr/bin/make -f make/Cpp.mk -j8 make[3]: Entering directory '/<>' make[3]: '/<>/build/C++/libConsensusCore.a' is up to date. make[3]: Leaving directory '/<>' make[3]: Entering directory '/<>' mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestMutationScorer.cpp -o /<>/build/Tests/TestMutationScorer.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestPairwiseAlignment.cpp -o /<>/build/Tests/TestPairwiseAlignment.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestMultiReadMutationScorer.cpp -o /<>/build/Tests/TestMultiReadMutationScorer.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestRecursors.cpp -o /<>/build/Tests/TestRecursors.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestMatrixFacades.cpp -o /<>/build/Tests/TestMatrixFacades.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestQvEvaluator.cpp -o /<>/build/Tests/TestQvEvaluator.o In file included from /usr/include/boost/bind.hpp:30, from /<>/src/Tests/TestQvEvaluator.cpp:5: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/ParameterSettings.cpp -o /<>/build/Tests/ParameterSettings.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestMutationEnumerator.cpp -o /<>/build/Tests/TestMutationEnumerator.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestPoaConsensus.cpp -o /<>/build/Tests/TestPoaConsensus.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestSparseVector.cpp -o /<>/build/Tests/TestSparseVector.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestDiploidQuiver.cpp -o /<>/build/Tests/TestDiploidQuiver.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestMutations.cpp -o /<>/build/Tests/TestMutations.o mkdir -p /<>/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O0 -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -I/<>/external/gmock-1.7.0 -c /<>/src/Tests/TestCoverage.cpp -o /<>/build/Tests/TestCoverage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now /<>/build/Tests/TestMutationScorer.o /<>/build/Tests/TestPairwiseAlignment.o /<>/build/Tests/TestMultiReadMutationScorer.o /<>/build/Tests/TestRecursors.o /<>/build/Tests/TestMatrixFacades.o /<>/build/Tests/TestQvEvaluator.o /<>/build/Tests/ParameterSettings.o /<>/build/Tests/TestMutationEnumerator.o /<>/build/Tests/TestPoaConsensus.o /<>/build/Tests/TestSparseVector.o /<>/build/Tests/TestDiploidQuiver.o /<>/build/Tests/TestMutations.o /<>/build/Tests/TestCoverage.o /<>/build/C++/libConsensusCore.a -I/<>/external/gmock-1.7.0 /<>/external/gmock-1.7.0/gmock-gtest-all.cc /<>/external/gmock-1.7.0/gmock_main.cc -lpthread -o /<>/build/Tests/test-runner GTEST_OUTPUT="xml:tests-summary.xml" /<>/build/Tests/test-runner Running main() from gmock_main.cc [==========] Running 158 tests from 29 test cases. [----------] Global test environment set-up. [----------] 3 tests from CoverageTests [ RUN ] CoverageTests.CoverageInWindowTest [ OK ] CoverageTests.CoverageInWindowTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest [ OK ] CoverageTests.CoveredIntervalsTest (1 ms) [ RUN ] CoverageTests.CoveredIntervalsTest2 [ OK ] CoverageTests.CoveredIntervalsTest2 (0 ms) [----------] 3 tests from CoverageTests (1 ms total) [----------] 7 tests from MutationTest [ RUN ] MutationTest.BasicTest [ OK ] MutationTest.BasicTest (0 ms) [ RUN ] MutationTest.DeleteTest [ OK ] MutationTest.DeleteTest (0 ms) [ RUN ] MutationTest.InsertTest [ OK ] MutationTest.InsertTest (0 ms) [ RUN ] MutationTest.ApplyMutationsTest [ OK ] MutationTest.ApplyMutationsTest (0 ms) [ RUN ] MutationTest.ApplyMutationsToSamePositionTest [ OK ] MutationTest.ApplyMutationsToSamePositionTest (0 ms) [ RUN ] MutationTest.MutationsToTranscript [ OK ] MutationTest.MutationsToTranscript (0 ms) [ RUN ] MutationTest.MutatedTemplatePositionsTest [ OK ] MutationTest.MutatedTemplatePositionsTest (0 ms) [----------] 7 tests from MutationTest (0 ms total) [----------] 2 tests from SparseVectorTest [ RUN ] SparseVectorTest.BasicTest [ OK ] SparseVectorTest.BasicTest (0 ms) [ RUN ] SparseVectorTest.BasicTest2 [ OK ] SparseVectorTest.BasicTest2 (0 ms) [----------] 2 tests from SparseVectorTest (0 ms total) [----------] 1 test from SparseVector [ RUN ] SparseVector.CopyTest [ OK ] SparseVector.CopyTest (0 ms) [----------] 1 test from SparseVector (0 ms total) [----------] 4 tests from PoaGraph [ RUN ] PoaGraph.SmallBasicTest [ OK ] PoaGraph.SmallBasicTest (0 ms) [ RUN ] PoaGraph.SmallExtraTests [ OK ] PoaGraph.SmallExtraTests (0 ms) [ RUN ] PoaGraph.SmallMismatchTests [ OK ] PoaGraph.SmallMismatchTests (0 ms) [ RUN ] PoaGraph.SmallDeletionTests [ OK ] PoaGraph.SmallDeletionTests (0 ms) [----------] 4 tests from PoaGraph (2 ms total) [----------] 8 tests from PoaConsensus [ RUN ] PoaConsensus.TestSimple [ OK ] PoaConsensus.TestSimple (0 ms) [ RUN ] PoaConsensus.TestOverhangSecond [ OK ] PoaConsensus.TestOverhangSecond (0 ms) [ RUN ] PoaConsensus.SmallSemiglobalTest [ OK ] PoaConsensus.SmallSemiglobalTest (0 ms) [ RUN ] PoaConsensus.SmallTilingTest [ OK ] PoaConsensus.SmallTilingTest (0 ms) [ RUN ] PoaConsensus.TestVerboseGraphVizOutput [ OK ] PoaConsensus.TestVerboseGraphVizOutput (1 ms) [ RUN ] PoaConsensus.TestLocalStaggered dot -Tpng local-staggered.dot > local-staggered.png sh: 1: dot: not found [ OK ] PoaConsensus.TestLocalStaggered (5 ms) [ RUN ] PoaConsensus.TestLongInsert [ OK ] PoaConsensus.TestLongInsert (1 ms) [ RUN ] PoaConsensus.NondeterminismRegressionTest [ OK ] PoaConsensus.NondeterminismRegressionTest (913 ms) [----------] 8 tests from PoaConsensus (921 ms total) [----------] 4 tests from MutationEnumerationTest [ RUN ] MutationEnumerationTest.TestAllMutations [ OK ] MutationEnumerationTest.TestAllMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueMutations [ OK ] MutationEnumerationTest.TestUniqueMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueNearbyMutations [ OK ] MutationEnumerationTest.TestUniqueNearbyMutations (2 ms) [ RUN ] MutationEnumerationTest.TestDinucleotideMutations [ OK ] MutationEnumerationTest.TestDinucleotideMutations (0 ms) [----------] 4 tests from MutationEnumerationTest (2 ms total) [----------] 5 tests from QvEvaluatorTest [ RUN ] QvEvaluatorTest.IncVsInc4 [ OK ] QvEvaluatorTest.IncVsInc4 (45 ms) [ RUN ] QvEvaluatorTest.DelVsDel4 [ OK ] QvEvaluatorTest.DelVsDel4 (45 ms) [ RUN ] QvEvaluatorTest.ExtraVsExtra4 [ OK ] QvEvaluatorTest.ExtraVsExtra4 (48 ms) [ RUN ] QvEvaluatorTest.MergeVsMerge4 [ OK ] QvEvaluatorTest.MergeVsMerge4 (40 ms) [ RUN ] QvEvaluatorTest.BadTagTest [ OK ] QvEvaluatorTest.BadTagTest (5 ms) [----------] 5 tests from QvEvaluatorTest (185 ms total) [----------] 11 tests from MatrixTest/0, where TypeParam = ConsensusCore::DenseMatrix [ RUN ] MatrixTest/0.Basic [ OK ] MatrixTest/0.Basic (0 ms) [ RUN ] MatrixTest/0.Nullability [ OK ] MatrixTest/0.Nullability (0 ms) [ RUN ] MatrixTest/0.Ranges [ OK ] MatrixTest/0.Ranges (0 ms) [ RUN ] MatrixTest/0.IsColumnEmpty [ OK ] MatrixTest/0.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/0.SSE [ OK ] MatrixTest/0.SSE (0 ms) [ RUN ] MatrixTest/0.ToHostArray [ OK ] MatrixTest/0.ToHostArray (0 ms) [ RUN ] MatrixTest/0.NonSequentialAccess [ OK ] MatrixTest/0.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/0.Holes [ OK ] MatrixTest/0.Holes (0 ms) [ RUN ] MatrixTest/0.BigBandedMatrix N13ConsensusCore11DenseMatrixE : 1000000 [ OK ] MatrixTest/0.BigBandedMatrix (32 ms) [ RUN ] MatrixTest/0.BigIrregularBandedMatrix [ OK ] MatrixTest/0.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/0.CopyTest [ OK ] MatrixTest/0.CopyTest (0 ms) [----------] 11 tests from MatrixTest/0 (32 ms total) [----------] 11 tests from MatrixTest/1, where TypeParam = ConsensusCore::SparseMatrix [ RUN ] MatrixTest/1.Basic [ OK ] MatrixTest/1.Basic (0 ms) [ RUN ] MatrixTest/1.Nullability [ OK ] MatrixTest/1.Nullability (0 ms) [ RUN ] MatrixTest/1.Ranges [ OK ] MatrixTest/1.Ranges (0 ms) [ RUN ] MatrixTest/1.IsColumnEmpty [ OK ] MatrixTest/1.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/1.SSE [ OK ] MatrixTest/1.SSE (0 ms) [ RUN ] MatrixTest/1.ToHostArray [ OK ] MatrixTest/1.ToHostArray (0 ms) [ RUN ] MatrixTest/1.NonSequentialAccess [ OK ] MatrixTest/1.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/1.Holes [ OK ] MatrixTest/1.Holes (0 ms) [ RUN ] MatrixTest/1.BigBandedMatrix N13ConsensusCore12SparseMatrixE : 1001976 [ OK ] MatrixTest/1.BigBandedMatrix (9 ms) [ RUN ] MatrixTest/1.BigIrregularBandedMatrix [ OK ] MatrixTest/1.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/1.CopyTest [ OK ] MatrixTest/1.CopyTest (0 ms) [----------] 11 tests from MatrixTest/1 (10 ms total) [----------] 7 tests from RecursorTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/0.SmallMatchTest [ OK ] RecursorTest/0.SmallMatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMismatchTest [ OK ] RecursorTest/0.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMergeTest [ OK ] RecursorTest/0.SmallMergeTest (0 ms) [ RUN ] RecursorTest/0.MediumSizedTest [ OK ] RecursorTest/0.MediumSizedTest (7 ms) [ RUN ] RecursorTest/0.LinkTest [ OK ] RecursorTest/0.LinkTest (0 ms) [ RUN ] RecursorTest/0.ExtendAlphaTest [ OK ] RecursorTest/0.ExtendAlphaTest (1 ms) [ RUN ] RecursorTest/0.ExtendBetaTest [ OK ] RecursorTest/0.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/0 (8 ms total) [----------] 7 tests from RecursorTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/1.SmallMatchTest [ OK ] RecursorTest/1.SmallMatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMismatchTest [ OK ] RecursorTest/1.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMergeTest [ OK ] RecursorTest/1.SmallMergeTest (0 ms) [ RUN ] RecursorTest/1.MediumSizedTest [ OK ] RecursorTest/1.MediumSizedTest (5 ms) [ RUN ] RecursorTest/1.LinkTest [ OK ] RecursorTest/1.LinkTest (0 ms) [ RUN ] RecursorTest/1.ExtendAlphaTest [ OK ] RecursorTest/1.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/1.ExtendBetaTest [ OK ] RecursorTest/1.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/1 (5 ms total) [----------] 7 tests from RecursorTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/2.SmallMatchTest [ OK ] RecursorTest/2.SmallMatchTest (1 ms) [ RUN ] RecursorTest/2.SmallMismatchTest [ OK ] RecursorTest/2.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMergeTest [ OK ] RecursorTest/2.SmallMergeTest (0 ms) [ RUN ] RecursorTest/2.MediumSizedTest [ OK ] RecursorTest/2.MediumSizedTest (9 ms) [ RUN ] RecursorTest/2.LinkTest [ OK ] RecursorTest/2.LinkTest (1 ms) [ RUN ] RecursorTest/2.ExtendAlphaTest [ OK ] RecursorTest/2.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/2.ExtendBetaTest [ OK ] RecursorTest/2.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/2 (11 ms total) [----------] 7 tests from RecursorTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/3.SmallMatchTest [ OK ] RecursorTest/3.SmallMatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMismatchTest [ OK ] RecursorTest/3.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMergeTest [ OK ] RecursorTest/3.SmallMergeTest (0 ms) [ RUN ] RecursorTest/3.MediumSizedTest [ OK ] RecursorTest/3.MediumSizedTest (4 ms) [ RUN ] RecursorTest/3.LinkTest [ OK ] RecursorTest/3.LinkTest (0 ms) [ RUN ] RecursorTest/3.ExtendAlphaTest [ OK ] RecursorTest/3.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/3.ExtendBetaTest [ OK ] RecursorTest/3.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/3 (5 ms total) [----------] 5 tests from RecursorFuzzTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/0.AlphaBetaConcordance [ OK ] RecursorFuzzTest/0.AlphaBetaConcordance (106 ms) [ RUN ] RecursorFuzzTest/0.Alignment [ OK ] RecursorFuzzTest/0.Alignment (104 ms) [ RUN ] RecursorFuzzTest/0.LinkAlphaBeta [ OK ] RecursorFuzzTest/0.LinkAlphaBeta (109 ms) [ RUN ] RecursorFuzzTest/0.ExtendAlpha [ OK ] RecursorFuzzTest/0.ExtendAlpha (22 ms) [ RUN ] RecursorFuzzTest/0.ExtendBeta [ OK ] RecursorFuzzTest/0.ExtendBeta (22 ms) [----------] 5 tests from RecursorFuzzTest/0 (363 ms total) [----------] 5 tests from RecursorFuzzTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/1.AlphaBetaConcordance [ OK ] RecursorFuzzTest/1.AlphaBetaConcordance (69 ms) [ RUN ] RecursorFuzzTest/1.Alignment [ OK ] RecursorFuzzTest/1.Alignment (75 ms) [ RUN ] RecursorFuzzTest/1.LinkAlphaBeta [ OK ] RecursorFuzzTest/1.LinkAlphaBeta (75 ms) [ RUN ] RecursorFuzzTest/1.ExtendAlpha [ OK ] RecursorFuzzTest/1.ExtendAlpha (19 ms) [ RUN ] RecursorFuzzTest/1.ExtendBeta [ OK ] RecursorFuzzTest/1.ExtendBeta (23 ms) [----------] 5 tests from RecursorFuzzTest/1 (261 ms total) [----------] 5 tests from RecursorFuzzTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/2.AlphaBetaConcordance [ OK ] RecursorFuzzTest/2.AlphaBetaConcordance (135 ms) [ RUN ] RecursorFuzzTest/2.Alignment [ OK ] RecursorFuzzTest/2.Alignment (130 ms) [ RUN ] RecursorFuzzTest/2.LinkAlphaBeta [ OK ] RecursorFuzzTest/2.LinkAlphaBeta (144 ms) [ RUN ] RecursorFuzzTest/2.ExtendAlpha [ OK ] RecursorFuzzTest/2.ExtendAlpha (13 ms) [ RUN ] RecursorFuzzTest/2.ExtendBeta [ OK ] RecursorFuzzTest/2.ExtendBeta (14 ms) [----------] 5 tests from RecursorFuzzTest/2 (436 ms total) [----------] 5 tests from RecursorFuzzTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/3.AlphaBetaConcordance [ OK ] RecursorFuzzTest/3.AlphaBetaConcordance (62 ms) [ RUN ] RecursorFuzzTest/3.Alignment [ OK ] RecursorFuzzTest/3.Alignment (69 ms) [ RUN ] RecursorFuzzTest/3.LinkAlphaBeta [ OK ] RecursorFuzzTest/3.LinkAlphaBeta (67 ms) [ RUN ] RecursorFuzzTest/3.ExtendAlpha [ OK ] RecursorFuzzTest/3.ExtendAlpha (12 ms) [ RUN ] RecursorFuzzTest/3.ExtendBeta [ OK ] RecursorFuzzTest/3.ExtendBeta (13 ms) [----------] 5 tests from RecursorFuzzTest/3 (224 ms total) [----------] 1 test from QuiverConfigTableTests [ RUN ] QuiverConfigTableTests.IllegalChemistry [ OK ] QuiverConfigTableTests.IllegalChemistry (0 ms) [----------] 1 test from QuiverConfigTableTests (0 ms total) [----------] 3 tests from MutationOrientationTests [ RUN ] MutationOrientationTests.ReadScoresMutation1 [ OK ] MutationOrientationTests.ReadScoresMutation1 (0 ms) [ RUN ] MutationOrientationTests.ReadScoresMutation2 [ OK ] MutationOrientationTests.ReadScoresMutation2 (0 ms) [ RUN ] MutationOrientationTests.OrientedMutation [ OK ] MutationOrientationTests.OrientedMutation (0 ms) [----------] 3 tests from MutationOrientationTests (0 ms total) [----------] 11 tests from MultiReadMutationScorerTest/0, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MultiReadMutationScorerTest/0.Template [ OK ] MultiReadMutationScorerTest/0.Template (0 ms) [ RUN ] MultiReadMutationScorerTest/0.BasicTest [ OK ] MultiReadMutationScorerTest/0.BasicTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ManyMutationTest [ OK ] MultiReadMutationScorerTest/0.ManyMutationTest (2 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyConstructorTest [ OK ] MultiReadMutationScorerTest/0.CopyConstructorTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ReverseStrandTest [ OK ] MultiReadMutationScorerTest/0.ReverseStrandTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning (0 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtEnd [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtEnd (0 ms) [ RUN ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 [ OK ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 (1 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyTest [ OK ] MultiReadMutationScorerTest/0.CopyTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds (0 ms) [----------] 11 tests from MultiReadMutationScorerTest/0 (4 ms total) [----------] 3 tests from PairwiseAlignmentTests [ RUN ] PairwiseAlignmentTests.RepresentationTests [ OK ] PairwiseAlignmentTests.RepresentationTests (0 ms) [ RUN ] PairwiseAlignmentTests.GlobalAlignmentTests [ OK ] PairwiseAlignmentTests.GlobalAlignmentTests (0 ms) [ RUN ] PairwiseAlignmentTests.TargetPositionsInQueryTest [ OK ] PairwiseAlignmentTests.TargetPositionsInQueryTest (1 ms) [----------] 3 tests from PairwiseAlignmentTests (1 ms total) [----------] 2 tests from AffineAlignmentTests [ RUN ] AffineAlignmentTests.BasicTests [ OK ] AffineAlignmentTests.BasicTests (0 ms) [ RUN ] AffineAlignmentTests.LargeGapTest [ OK ] AffineAlignmentTests.LargeGapTest (6 ms) [----------] 2 tests from AffineAlignmentTests (7 ms total) [----------] 1 test from IupacAlignmentTests [ RUN ] IupacAlignmentTests.BasicTest [ OK ] IupacAlignmentTests.BasicTest (0 ms) [----------] 1 test from IupacAlignmentTests (0 ms total) [----------] 1 test from LinearAlignmentTests [ RUN ] LinearAlignmentTests.BasicTest [ OK ] LinearAlignmentTests.BasicTest (0 ms) [----------] 1 test from LinearAlignmentTests (0 ms total) [----------] 8 tests from MutationScorerTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/0.BasicTest [ OK ] MutationScorerTest/0.BasicTest (0 ms) [ RUN ] MutationScorerTest/0.CopyTest [ OK ] MutationScorerTest/0.CopyTest (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtBeginning [ OK ] MutationScorerTest/0.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtEnd [ OK ] MutationScorerTest/0.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/0.TinyTemplate [ OK ] MutationScorerTest/0.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/0.TemplateMutationWorkflow [ OK ] MutationScorerTest/0.TemplateMutationWorkflow (1 ms) [ RUN ] MutationScorerTest/0.DinucleotideInsertionTest [ OK ] MutationScorerTest/0.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/0.DinucleotideDeletionTest [ OK ] MutationScorerTest/0.DinucleotideDeletionTest (2 ms) [----------] 8 tests from MutationScorerTest/0 (4 ms total) [----------] 8 tests from MutationScorerTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/1.BasicTest [ OK ] MutationScorerTest/1.BasicTest (0 ms) [ RUN ] MutationScorerTest/1.CopyTest [ OK ] MutationScorerTest/1.CopyTest (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtBeginning [ OK ] MutationScorerTest/1.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtEnd [ OK ] MutationScorerTest/1.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/1.TinyTemplate [ OK ] MutationScorerTest/1.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/1.TemplateMutationWorkflow [ OK ] MutationScorerTest/1.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/1.DinucleotideInsertionTest [ OK ] MutationScorerTest/1.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/1.DinucleotideDeletionTest [ OK ] MutationScorerTest/1.DinucleotideDeletionTest (2 ms) [----------] 8 tests from MutationScorerTest/1 (4 ms total) [----------] 8 tests from MutationScorerTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/2.BasicTest [ OK ] MutationScorerTest/2.BasicTest (0 ms) [ RUN ] MutationScorerTest/2.CopyTest [ OK ] MutationScorerTest/2.CopyTest (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtBeginning [ OK ] MutationScorerTest/2.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtEnd [ OK ] MutationScorerTest/2.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/2.TinyTemplate [ OK ] MutationScorerTest/2.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/2.TemplateMutationWorkflow [ OK ] MutationScorerTest/2.TemplateMutationWorkflow (1 ms) [ RUN ] MutationScorerTest/2.DinucleotideInsertionTest [ OK ] MutationScorerTest/2.DinucleotideInsertionTest (2 ms) [ RUN ] MutationScorerTest/2.DinucleotideDeletionTest [ OK ] MutationScorerTest/2.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/2 (4 ms total) [----------] 8 tests from MutationScorerTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/3.BasicTest [ OK ] MutationScorerTest/3.BasicTest (0 ms) [ RUN ] MutationScorerTest/3.CopyTest [ OK ] MutationScorerTest/3.CopyTest (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtBeginning [ OK ] MutationScorerTest/3.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtEnd [ OK ] MutationScorerTest/3.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/3.TinyTemplate [ OK ] MutationScorerTest/3.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/3.TemplateMutationWorkflow [ OK ] MutationScorerTest/3.TemplateMutationWorkflow (1 ms) [ RUN ] MutationScorerTest/3.DinucleotideInsertionTest [ OK ] MutationScorerTest/3.DinucleotideInsertionTest (1 ms) [ RUN ] MutationScorerTest/3.DinucleotideDeletionTest [ OK ] MutationScorerTest/3.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/3 (4 ms total) [----------] Global test environment tear-down [==========] 158 tests from 29 test cases ran. (2495 ms total) [ PASSED ] 158 tests. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:310: /usr/bin/python3.12 setup.py install --root /<>/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig4.0 PYTHON_INCLUDE = /usr/include/python3.12 NUMPY_INCLUDE = /usr/lib/python3/dist-packages/numpy/core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/<>' make -f make/Cpp.mk -j8 make[2]: Entering directory '/<>' make[2]: '/<>/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/<>' make -f make/Python.mk make[2]: Entering directory '/<>' mkdir -p /<>/build/Python SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig -Wall -c++ -python -builtin -I/<>/include -I/<>/external -module ConsensusCore -o /<>/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /<>/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /<>/include/ConsensusCore/Matrix/DenseMatrix.hpp:27: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /<>/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/<>/include -I/<>/external -I /usr/include/python3.12 -I /usr/lib/python3/dist-packages/numpy/core/include /<>/build/Python/ConsensusCore_wrap.cxx /<>/build/C++/libConsensusCore.a -o /<>/build/Python/_ConsensusCore.so make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /<>/.pybuild/cpython3_3.12_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /<>/.pybuild/cpython3_3.12_pbconsensuscore/build creating /<>/debian/python3-pbconsensuscore creating /<>/debian/python3-pbconsensuscore/usr creating /<>/debian/python3-pbconsensuscore/usr/lib creating /<>/debian/python3-pbconsensuscore/usr/lib/python3.12 creating /<>/debian/python3-pbconsensuscore/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12_pbconsensuscore/build/_ConsensusCore.so -> /<>/debian/python3-pbconsensuscore/usr/lib/python3.12/dist-packages copying /<>/.pybuild/cpython3_3.12_pbconsensuscore/build/ConsensusCore.py -> /<>/debian/python3-pbconsensuscore/usr/lib/python3.12/dist-packages byte-compiling /<>/debian/python3-pbconsensuscore/usr/lib/python3.12/dist-packages/ConsensusCore.py to ConsensusCore.cpython-312.pyc running install_egg_info running egg_info creating build/Python/ConsensusCore.egg-info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /<>/debian/python3-pbconsensuscore/usr/lib/python3.12/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:310: /usr/bin/python3 setup.py install --root /<>/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig4.0 PYTHON_INCLUDE = /usr/include/python3.11 NUMPY_INCLUDE = /usr/lib/python3/dist-packages/numpy/core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/<>' make -f make/Cpp.mk -j8 make[2]: Entering directory '/<>' make[2]: '/<>/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/<>' make -f make/Python.mk make[2]: Entering directory '/<>' mkdir -p /<>/build/Python SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig -Wall -c++ -python -builtin -I/<>/include -I/<>/external -module ConsensusCore -o /<>/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /<>/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /<>/include/ConsensusCore/Matrix/DenseMatrix.hpp:27: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /<>/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2 -O3 -DNDEBUG -g -msse3 -fPIC -fno-omit-frame-pointer -I/<>/include -I/<>/external -I/usr/include/ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/<>/include -I/<>/external -I /usr/include/python3.11 -I /usr/lib/python3/dist-packages/numpy/core/include /<>/build/Python/ConsensusCore_wrap.cxx /<>/build/C++/libConsensusCore.a -o /<>/build/Python/_ConsensusCore.so make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /<>/.pybuild/cpython3_3.11_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /<>/.pybuild/cpython3_3.11_pbconsensuscore/build creating /<>/debian/python3-pbconsensuscore/usr/lib/python3.11 creating /<>/debian/python3-pbconsensuscore/usr/lib/python3.11/dist-packages copying /<>/.pybuild/cpython3_3.11_pbconsensuscore/build/_ConsensusCore.so -> /<>/debian/python3-pbconsensuscore/usr/lib/python3.11/dist-packages copying /<>/.pybuild/cpython3_3.11_pbconsensuscore/build/ConsensusCore.py -> /<>/debian/python3-pbconsensuscore/usr/lib/python3.11/dist-packages byte-compiling /<>/debian/python3-pbconsensuscore/usr/lib/python3.11/dist-packages/ConsensusCore.py to ConsensusCore.cpython-311.pyc running install_egg_info running egg_info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /<>/debian/python3-pbconsensuscore/usr/lib/python3.11/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/<>' dh_python3 I: dh_python3 fs:423: renaming _ConsensusCore.so to _ConsensusCore.cpython-311-x86_64-linux-gnu.so I: dh_python3 fs:423: renaming _ConsensusCore.so to _ConsensusCore.cpython-312-x86_64-linux-gnu.so dh_numpy3 make[1]: Leaving directory '/<>' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/python3-pbconsensuscore/usr/lib/python3/dist-packages/_ConsensusCore.cpython-311-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 95f0e93bed23bf9a0946c6f729217af23dfca4f3 debugedit: debian/python3-pbconsensuscore/usr/lib/python3/dist-packages/_ConsensusCore.cpython-312-x86_64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 4c113f6775c0405e1955eaccdcf814d33d3bfd42 dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package libconsensuscore-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libconsensuscore-dev: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing python3-pbconsensuscore (in debian/python3-pbconsensuscore); do_strip: , oemstrip: pkgstriptranslations: processing python3-pbconsensuscore-dbgsym (in debian/.debhelper/python3-pbconsensuscore/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libconsensuscore-dev (in debian/libconsensuscore-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pbconsensuscore/DEBIAN/control, package python3-pbconsensuscore, directory debian/python3-pbconsensuscore INFO: pkgstripfiles: waiting for lock (python3-pbconsensuscore) ... pkgstripfiles: processing control file: debian/libconsensuscore-dev/DEBIAN/control, package libconsensuscore-dev, directory debian/libconsensuscore-dev pkgstripfiles: Running PNG optimization (using 4 cpus) for package libconsensuscore-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libconsensuscore-dev' in '../libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pbconsensuscore ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pbconsensuscore' in '../python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python3-pbconsensuscore/dbgsym-root/DEBIAN/control, package python3-pbconsensuscore-dbgsym, directory debian/.debhelper/python3-pbconsensuscore/dbgsym-root dpkg-deb: building package 'python3-pbconsensuscore-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-pbconsensuscore/python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.deb'. Renaming python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.deb to python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.ddeb dpkg-genbuildinfo --build=binary -O../consensuscore_1.1.1+dfsg-4build2_amd64.buildinfo Use of uninitialized value in split at /usr/share/perl5/Dpkg/BuildFlags.pm line 373. Use of uninitialized value in string eq at /usr/bin/dpkg-genbuildinfo line 336. dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../consensuscore_1.1.1+dfsg-4build2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-11-02T09:01:47Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ consensuscore_1.1.1+dfsg-4build2_amd64.changes: ----------------------------------------------- Format: 1.8 Date: Thu, 02 Nov 2023 09:19:56 +0100 Source: consensuscore Binary: libconsensuscore-dev python3-pbconsensuscore Built-For-Profiles: noudeb Architecture: amd64 Version: 1.1.1+dfsg-4build2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python3-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 3 Changes: consensuscore (1.1.1+dfsg-4build2) noble; urgency=medium . * No-change rebuild to build with python3.12 as supported. Checksums-Sha1: 0d1aaf7e5b0db03460ead73b98f00475aa9b9aee 7917 consensuscore_1.1.1+dfsg-4build2_amd64.buildinfo 6fe7a14ac2065235e59bc8e764097595f27cacc1 523028 libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb 2eeb4e41c212c3d72367b4ca53c43914a5a4ec8b 12612948 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.ddeb 2121c03a8c2cadd8ce1de5b3816fbac5cf7499d2 1010388 python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb Checksums-Sha256: bfa36f4714de02b434e878958e567f1287cc67060a9530970e7421eaa08528ae 7917 consensuscore_1.1.1+dfsg-4build2_amd64.buildinfo 58550089bcd220ff847e8621e1c66fced5b894a604ff42053c11d810679a946f 523028 libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb ed6ffbff53cb2feaa6cb7a33d8b901b63497f75223f04803b46a8961d400039e 12612948 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.ddeb 9f2844cfec13b1a0e067c3a3906ad597f0d6a05b6e9aaa87338e25e8d32a07f2 1010388 python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb Files: c3e98e786eef617ea0f275f1a99fba41 7917 science optional consensuscore_1.1.1+dfsg-4build2_amd64.buildinfo 0cb33ad04c549b22e9cde91403c462bc 523028 libdevel optional libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb 8513b145726af97039bf829ebc55eefd 12612948 debug optional python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.ddeb 8c65993c6f7f75fa7b5aa32516f178d5 1010388 python optional python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb /<>/consensuscore_1.1.1+dfsg-4build2_amd64.changes.new could not be renamed to /<>/consensuscore_1.1.1+dfsg-4build2_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: consensuscore Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Architecture: amd64 Version: 1.1.1+dfsg-4build2 Checksums-Md5: 0cb33ad04c549b22e9cde91403c462bc 523028 libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb 8513b145726af97039bf829ebc55eefd 12612948 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.ddeb 8c65993c6f7f75fa7b5aa32516f178d5 1010388 python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb Checksums-Sha1: 6fe7a14ac2065235e59bc8e764097595f27cacc1 523028 libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb 2eeb4e41c212c3d72367b4ca53c43914a5a4ec8b 12612948 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.ddeb 2121c03a8c2cadd8ce1de5b3816fbac5cf7499d2 1010388 python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb Checksums-Sha256: 58550089bcd220ff847e8621e1c66fced5b894a604ff42053c11d810679a946f 523028 libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb ed6ffbff53cb2feaa6cb7a33d8b901b63497f75223f04803b46a8961d400039e 12612948 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-4build2_amd64.ddeb 9f2844cfec13b1a0e067c3a3906ad597f0d6a05b6e9aaa87338e25e8d32a07f2 1010388 python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 02 Nov 2023 09:01:46 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13build1), autotools-dev (= 20220109.1), base-files (= 13ubuntu4), base-passwd (= 3.6.2), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-6ubuntu1), binutils-common (= 2.41-6ubuntu1), binutils-x86-64-linux-gnu (= 2.41-6ubuntu1), bsdextrautils (= 2.39.1-4ubuntu2), bsdutils (= 1:2.39.1-4ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-13 (= 13.2.0-6ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.7ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-exec (= 0.28), dh-python (= 6.20231025), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu1), dpkg-dev (= 1.22.1ubuntu1), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-6ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-13 (= 13.2.0-6ubuntu1), gcc-13-base (= 13.2.0-6ubuntu1), gettext (= 0.21-13build1), gettext-base (= 0.21-13build1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-6ubuntu1), libatomic1 (= 13.2.0-6ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1build1), libaudit1 (= 1:3.1.1-1build1), libbinutils (= 2.41-6ubuntu1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.1-4ubuntu2), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0+ds1-23ubuntu2), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-1build3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-6ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-6ubuntu1), libctf0 (= 2.41-6ubuntu1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.7ubuntu1), libdpkg-perl (= 1.22.1ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libexpat1 (= 2.5.0-2), libexpat1-dev (= 2.5.0-2), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-6ubuntu1), libgcc-s1 (= 13.2.0-6ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgfortran5 (= 13.2.0-6ubuntu1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 13.2.0-6ubuntu1), libgpg-error0 (= 1.47-2), libgprofng0 (= 2.41-6ubuntu1), libgssapi-krb5-2 (= 1.20.1-3ubuntu1), libhwasan0 (= 13.2.0-6ubuntu1), libicu72 (= 72.1-3ubuntu3), libisl23 (= 0.26-3), libitm1 (= 13.2.0-6ubuntu1), libjansson4 (= 2.14-2), libjs-jquery (= 3.6.1+dfsg+~3.5.14-1), libjs-sphinxdoc (= 5.3.0-7), libjs-underscore (= 1.13.4~dfsg+~1.11.4-3), libk5crypto3 (= 1.20.1-3ubuntu1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3ubuntu1), libkrb5support0 (= 1.20.1-3ubuntu1), liblapack3 (= 3.11.0-2build1), liblsan0 (= 13.2.0-6ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.1-4ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231016-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-9ubuntu1), libpipeline1 (= 1.5.7-1), libpython3-all-dev (= 3.11.4-5ubuntu1), libpython3-dev (= 3.11.4-5ubuntu1), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11 (= 3.11.6-3), libpython3.11-dev (= 3.11.6-3), libpython3.11-minimal (= 3.11.6-3), libpython3.11-stdlib (= 3.11.6-3), libpython3.12 (= 3.12.0-1), libpython3.12-dev (= 3.12.0-1), libpython3.12-minimal (= 3.12.0-1), libpython3.12-stdlib (= 3.12.0-1), libquadmath0 (= 13.2.0-6ubuntu1), libreadline8 (= 8.2-1.3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1build1), libsframe1 (= 2.41-6ubuntu1), libsmartcols1 (= 2.39.1-4ubuntu2), libsqlite3-0 (= 3.43.2-1), libssl3 (= 3.0.10-1ubuntu2.1), libstdc++-13-dev (= 13.2.0-6ubuntu1), libstdc++6 (= 13.2.0-6ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu7), libtinfo6 (= 6.4+20231016-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-6ubuntu1), libubsan1 (= 13.2.0-6ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring5 (= 1.1-2), libuuid1 (= 2.39.1-4ubuntu2), libxml2 (= 2.9.14+dfsg-1.3build1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.0-9.9), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 43), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20230808-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), patch (= 2.7.6-7build2), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5ubuntu1), python3-all (= 3.11.4-5ubuntu1), python3-all-dev (= 3.11.4-5ubuntu1), python3-dev (= 3.11.4-5ubuntu1), python3-distutils (= 3.11.5-1), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.11.4-5ubuntu1), python3-numpy (= 1:1.24.2-1ubuntu1), python3-pkg-resources (= 68.1.2-2), python3-setuptools (= 68.1.2-2), python3.11 (= 3.11.6-3), python3.11-dev (= 3.11.6-3), python3.11-minimal (= 3.11.6-3), python3.12 (= 3.12.0-1), python3.12-dev (= 3.12.0-1), python3.12-minimal (= 3.12.0-1), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), swig (= 4.1.0-0.3), swig4.0 (= 4.1.0-0.3), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), tzdata (= 2023c-9ubuntu1), util-linux (= 2.39.1-4ubuntu2), xz-utils (= 5.4.4-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" DEB_GCJFLAGS_SET="-fdebug-prefix-map=/<>=/usr/src/consensuscore-1.1.1+dfsg-4build2" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1698913196" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libconsensuscore-dev_1.1.1+dfsg-4build2_amd64.deb ------------------------------------------------- new Debian package, version 2.0. size 523028 bytes: control archive=2174 bytes. 819 bytes, 18 lines control 4297 bytes, 53 lines md5sums Package: libconsensuscore-dev Source: consensuscore Version: 1.1.1+dfsg-4build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3429 Section: libdevel Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- development files ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the header files and static library. drwxr-xr-x root/root 0 2023-11-02 08:19 ./ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/ drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/ drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/ -rw-r--r-- root/root 1214 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AffineAlignment.hpp -rw-r--r-- root/root 775 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/AlignConfig.hpp -rw-r--r-- root/root 565 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/LinearAlignment.hpp -rw-r--r-- root/root 1956 2018-08-14 14:23 ./usr/include/ConsensusCore/Align/PairwiseAlignment.hpp -rw-r--r-- root/root 196 2018-08-14 14:23 ./usr/include/ConsensusCore/Checksum.hpp -rw-r--r-- root/root 653 2018-08-14 14:23 ./usr/include/ConsensusCore/Coverage.hpp drwxr-xr-x root/root 0 2018-08-14 14:23 ./usr/include/ConsensusCore/Edna/ -rw-r--r-- root/root 792 2018-08-14 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./usr/share/doc/libconsensuscore-dev/copyright python3-pbconsensuscore_1.1.1+dfsg-4build2_amd64.deb ---------------------------------------------------- new Debian package, version 2.0. size 1010388 bytes: control archive=1310 bytes. 964 bytes, 19 lines control 800 bytes, 8 lines md5sums 293 bytes, 12 lines * postinst #!/bin/sh 406 bytes, 12 lines * prerm #!/bin/sh Package: python3-pbconsensuscore Source: consensuscore Version: 1.1.1+dfsg-4build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5569 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 13.1), python3 (<< 3.13), python3 (>= 3.11~), python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3:any Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- Python 3 ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the Python3 bindings. drwxr-xr-x root/root 0 2023-11-02 08:19 ./ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/lib/ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/ -rw-r--r-- root/root 2241 2023-11-02 08:19 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-11-02 08:19 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/dependency_links.txt -rw-r--r-- root/root 15 2023-11-02 08:19 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/top_level.txt -rw-r--r-- root/root 432 2023-11-02 08:19 ./usr/lib/python3/dist-packages/ConsensusCore.py -rw-r--r-- root/root 2836224 2023-11-02 08:19 ./usr/lib/python3/dist-packages/_ConsensusCore.cpython-311-x86_64-linux-gnu.so -rw-r--r-- root/root 2840336 2023-11-02 08:19 ./usr/lib/python3/dist-packages/_ConsensusCore.cpython-312-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/share/ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-11-02 08:19 ./usr/share/doc/python3-pbconsensuscore/ -rw-r--r-- root/root 721 2023-11-02 08:19 ./usr/share/doc/python3-pbconsensuscore/changelog.Debian.gz -rw-r--r-- root/root 5866 2022-11-14 13:14 ./usr/share/doc/python3-pbconsensuscore/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 313668 Build-Time: 408 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 16 Job: consensuscore_1.1.1+dfsg-4build2.dsc Machine Architecture: amd64 Package: consensuscore Package-Time: 426 Source-Version: 1.1.1+dfsg-4build2 Space: 313668 Status: successful Version: 1.1.1+dfsg-4build2 -------------------------------------------------------------------------------- Finished at 2023-11-02T09:01:47Z Build needed 00:07:06, 313668k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-26950734 Scanning for processes to kill in build PACKAGEBUILD-26950734