https://launchpad.net/ubuntu/+source/dcmstack/0.8-1/+build/19222298 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-023 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:16:10 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.8 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 27 Apr 22:35:43 ntpdate[1896]: adjust time server 10.211.37.1 offset 0.000770 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19222298 --image-type chroot /home/buildd/filecache-default/7f6882774d93a6ce12d34cd2f4e4b83a707bcc6e Creating target for build PACKAGEBUILD-19222298 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19222298 Starting target for build PACKAGEBUILD-19222298 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19222298 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19222298 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19222298 Updating target for build PACKAGEBUILD-19222298 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [109 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 Packages [971 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe amd64 Packages [8632 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5124 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 Packages [99.8 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [55.0 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 Packages [655 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [425 kB] Fetched 17.0 MB in 5s (3676 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files cpp-9 dash debconf g++-9 gcc-10-base gcc-9 gcc-9-base libasan5 libatomic1 libcap2 libcc1-0 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 liblsan0 libncurses6 libncursesw6 libperl5.30 libquadmath0 libsqlite3-0 libstdc++-9-dev libstdc++6 libtinfo6 libtsan0 libubsan1 make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 34 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After this operation, 28.7 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main amd64 base-files amd64 11ubuntu6 [60.0 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libperl5.30 amd64 5.30.0-10 [3939 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 perl amd64 5.30.0-10 [224 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 perl-base amd64 5.30.0-10 [1511 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 debconf all 1.5.74 [121 kB] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 dash amd64 0.5.10.2-7 [86.3 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-bin amd64 6.2-1 [172 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-base all 6.2-1 [18.7 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libubsan1 amd64 10-20200425-1ubuntu2 [136 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libtsan0 amd64 10-20200425-1ubuntu2 [319 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 gcc-10-base amd64 10-20200425-1ubuntu2 [19.3 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libstdc++6 amd64 10-20200425-1ubuntu2 [503 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libquadmath0 amd64 10-20200425-1ubuntu2 [146 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 liblsan0 amd64 10-20200425-1ubuntu2 [144 kB] Get:16 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libitm1 amd64 10-20200425-1ubuntu2 [26.4 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgomp1 amd64 10-20200425-1ubuntu2 [101 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcc1-0 amd64 10-20200425-1ubuntu2 [41.2 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libatomic1 amd64 10-20200425-1ubuntu2 [9276 B] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgcc-s1 amd64 10-20200425-1ubuntu2 [41.5 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main amd64 libncurses6 amd64 6.2-1 [101 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main amd64 libncursesw6 amd64 6.2-1 [132 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main amd64 libtinfo6 amd64 6.2-1 [87.1 kB] Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libidn2-0 amd64 2.3.0-1 [52.6 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcap2 amd64 1:2.33-1 [17.8 kB] Get:26 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsqlite3-0 amd64 3.31.1-5 [548 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libasan5 amd64 9.3.0-11ubuntu2 [395 kB] Get:28 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 g++-9 amd64 9.3.0-11ubuntu2 [8406 kB] Get:29 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 gcc-9 amd64 9.3.0-11ubuntu2 [8237 kB] Get:30 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libstdc++-9-dev amd64 9.3.0-11ubuntu2 [1713 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgcc-9-dev amd64 9.3.0-11ubuntu2 [2359 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 cpp-9 amd64 9.3.0-11ubuntu2 [7490 kB] Get:33 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 gcc-9-base amd64 9.3.0-11ubuntu2 [19.4 kB] Get:34 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 make amd64 4.2.1-1.3 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.1 MB in 1s (53.3 MB/s) (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu6_amd64.deb ... Unpacking base-files (11ubuntu6) over (11ubuntu5) ... Setting up base-files (11ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../libperl5.30_5.30.0-10_amd64.deb ... Unpacking libperl5.30:amd64 (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl_5.30.0-10_amd64.deb ... Unpacking perl (5.30.0-10) over (5.30.0-9build1) ... Preparing to unpack .../perl-base_5.30.0-10_amd64.deb ... Unpacking perl-base (5.30.0-10) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-10) ... (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../perl-modules-5.30_5.30.0-10_all.deb ... Unpacking perl-modules-5.30 (5.30.0-10) over (5.30.0-9build1) ... 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Setting up perl-modules-5.30 (5.30.0-10) ... Setting up libsqlite3-0:amd64 (3.31.1-5) ... Setting up libgomp1:amd64 (10-20200425-1ubuntu2) ... Setting up libcap2:amd64 (1:2.33-1) ... Setting up make (4.2.1-1.3) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libquadmath0:amd64 (10-20200425-1ubuntu2) ... Setting up libatomic1:amd64 (10-20200425-1ubuntu2) ... Setting up libncursesw6:amd64 (6.2-1) ... Setting up libubsan1:amd64 (10-20200425-1ubuntu2) ... Setting up libperl5.30:amd64 (5.30.0-10) ... Setting up libcc1-0:amd64 (10-20200425-1ubuntu2) ... Setting up liblsan0:amd64 (10-20200425-1ubuntu2) ... Setting up libitm1:amd64 (10-20200425-1ubuntu2) ... Setting up gcc-9-base:amd64 (9.3.0-11ubuntu2) ... Setting up libtsan0:amd64 (10-20200425-1ubuntu2) ... Setting up libasan5:amd64 (9.3.0-11ubuntu2) ... Setting up perl (5.30.0-10) ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up libgcc-9-dev:amd64 (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:amd64 (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19222298 amd64 groovy-proposed -c chroot:build-PACKAGEBUILD-19222298 --arch=amd64 --dist=groovy-proposed --nolog -A dcmstack_0.8-1.dsc Initiating build PACKAGEBUILD-19222298 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:16:10 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-023.buildd +==============================================================================+ | dcmstack 0.8-1 (amd64) 27 Apr 2020 22:36 | +==============================================================================+ Package: dcmstack Version: 0.8-1 Source Version: 0.8-1 Distribution: groovy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/dcmstack-2LmZbs/dcmstack-0.8' with '<>' I: NOTICE: Log filtering will replace 'build/dcmstack-2LmZbs' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19222298/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- dcmstack_0.8-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-706uhT/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-706uhT/apt_archive ./ InRelease Get:2 copy:/<>/resolver-706uhT/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-706uhT/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-706uhT/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-706uhT/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (156 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-706uhT/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), dh-python, help2man, python3-all, python3-dicom (>= 0.9.7~), python3-docutils, python3-mock, python3-nibabel (>= 2.0~), python3-nose, python3-numpy, python3-numpydoc, python3-setuptools, python3-sphinx (>= 1.0.7+dfsg-1~) Filtered Build-Depends: debhelper (>= 9), dh-python, help2man, python3-all, python3-dicom (>= 0.9.7~), python3-docutils, python3-mock, python3-nibabel (>= 2.0~), python3-nose, python3-numpy, python3-numpydoc, python3-setuptools, python3-sphinx (>= 1.0.7+dfsg-1~) dpkg-deb: building package 'sbuild-build-depends-dcmstack-dummy' in '/<>/resolver-xMXqus/apt_archive/sbuild-build-depends-dcmstack-dummy.deb'. Ign:1 copy:/<>/resolver-xMXqus/apt_archive ./ InRelease Get:2 copy:/<>/resolver-xMXqus/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-xMXqus/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-xMXqus/apt_archive ./ Sources [304 B] Get:5 copy:/<>/resolver-xMXqus/apt_archive ./ Packages [624 B] Fetched 3047 B in 0s (176 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install dcmstack build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu66 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python-babel-localedata python3 python3-alabaster python3-all python3-babel python3-certifi python3-chardet python3-decorator python3-dicom python3-distutils python3-docutils python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-mock python3-nibabel python3-nose python3-numpy python3-numpydoc python3-packaging python3-pbr python3-pkg-resources python3-pydicom python3-pygments python3-pyparsing python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-sphinx python3-tz python3-urllib3 python3.8 python3.8-minimal sgml-base sphinx-common xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-jinja2-doc python-mock-doc python-nibabel-doc python-nose-doc gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python3-matplotlib python3-gdcm python-pygments-doc ttf-bitstream-vera python-pyparsing-doc python3-cryptography python3-openssl python3-socks python-scipy-doc python-setuptools-doc dvipng imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme python3-stemmer sphinx-doc texlive-fonts-recommended texlive-latex-extra texlive-plain-generic python3.8-venv python3.8-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl libpaper-utils python3-pil python3-fuse The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libblas3 libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu66 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python-babel-localedata python3 python3-alabaster python3-all python3-babel python3-certifi python3-chardet python3-decorator python3-dicom python3-distutils python3-docutils python3-idna python3-imagesize python3-jinja2 python3-lib2to3 python3-markupsafe python3-minimal python3-mock python3-nibabel python3-nose python3-numpy python3-numpydoc python3-packaging python3-pbr python3-pkg-resources python3-pydicom python3-pygments python3-pyparsing python3-requests python3-roman python3-scipy python3-setuptools python3-six python3-sphinx python3-tz python3-urllib3 python3.8 python3.8-minimal sbuild-build-depends-dcmstack-dummy sgml-base sphinx-common xml-core 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 78.7 MB of archives. After this operation, 341 MB of additional disk space will be used. 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Setting up libpipeline1:amd64 (1.5.2-2build1) ... Setting up mime-support (3.64ubuntu1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libicu66:amd64 (66.1-2ubuntu2) ... Setting up libdebhelper-perl (13ubuntu1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1ubuntu2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:amd64 (3.9.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libgfortran5:amd64 (10-20200425-1ubuntu2) ... Setting up libuchardet0:amd64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.30) ... Setting up libmpdec2:amd64 (2.4.2-3) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libpython3.8-stdlib:amd64 (3.8.2-1ubuntu1) ... Setting up python3.8 (3.8.2-1ubuntu1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libpython3-stdlib:amd64 (3.8.2-0ubuntu2) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up liblapack3:amd64 (3.9.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up python3-markupsafe (1.1.1-1) ... Setting up python3-tz (2019.3-2) ... Setting up help2man (1.47.15) ... Setting up python3-six (1.14.0-3) ... Setting up python3-roman (2.0.0-4) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-jinja2 (2.11.1-1) ... Setting up python3-pygments (2.3.1+dfsg-1ubuntu2) ... Setting up python3-pyparsing (2.4.6-2) ... Setting up python3-certifi (2019.11.28-2) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up python3-idna (2.8-2) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libjs-sphinxdoc (1.8.5-7ubuntu3) ... Setting up autoconf (2.69-11.1) ... Setting up python3-urllib3 (1.25.8-2) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up xml-core (0.18+nmu1) ... Setting up python3-pydicom (1.4.1-1) ... /usr/lib/python3/dist-packages/pydicom/tests/test_dataset.py:1393: SyntaxWarning: "is" with a literal. Did you mean "=="? if elem.keyword is 'PatientID': Setting up python3-lib2to3 (3.8.2-1ubuntu1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-8) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-pkg-resources (46.1.3-1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.2-1ubuntu1) ... Setting up dh-python (4.20200315) ... Setting up gettext (0.19.8.1-10build1) ... Setting up python3-setuptools (46.1.3-1) ... Setting up python3-babel (2.6.0+dfsg.1-1ubuntu2) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pbr (5.4.5-0ubuntu1) ... update-alternatives: using /usr/bin/python3-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up python3-alabaster (0.7.8-1.1) ... Setting up python3-all (3.8.2-0ubuntu2) ... Setting up python3-dicom (1.4.1-1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-nose (1.3.7-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-mock (3.0.5-2) ... Setting up python3-packaging (20.3-1.2) ... Setting up python3-chardet (3.0.4-7) ... Setting up sphinx-common (1.8.5-7ubuntu3) ... Setting up python3-requests (2.22.0-2ubuntu1) ... Setting up python3-numpy (1:1.17.4-5ubuntu3) ... Setting up python3-scipy (1.3.3-3build1) ... Setting up po-debconf (1.0.21) ... Setting up python3-nibabel (3.0.1-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-2) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-2) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (1.8.5-7ubuntu3) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Setting up python3-numpydoc (0.7.0-2) ... Setting up sbuild-build-depends-dcmstack-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-11ubuntu2 gcc-9_9.3.0-11ubuntu2 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 linux-libc-dev_5.4.0-26.30 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu6 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-x86-64-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-11ubuntu2 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 docutils-common_0.16+dfsg-2 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-11ubuntu2 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200425-1ubuntu2 gcc-9_9.3.0-11ubuntu2 gcc-9-base_9.3.0-11ubuntu2 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 help2man_1.47.15 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapparmor1_2.13.3-7ubuntu5 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-11ubuntu2 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200425-1ubuntu2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblas3_3.9.0-2 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.33-1 libcc1-0_10-20200425-1ubuntu2 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libcryptsetup12_2:2.2.2-3ubuntu2 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu9 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-11ubuntu2 libgcc-s1_10-20200425-1ubuntu2 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200425-1ubuntu2 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200425-1ubuntu2 libgpg-error0_1.37-1 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10-20200425-1ubuntu2 libjs-jquery_3.3.1~dfsg-3 libjs-sphinxdoc_1.8.5-7ubuntu3 libjs-underscore_1.9.1~dfsg-1 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblapack3_3.9.0-2 liblbfgsb0_3.0+dfsg.3-8 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200425-1ubuntu2 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-1ubuntu2 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8-minimal_3.8.2-1ubuntu1 libpython3.8-stdlib_3.8.2-1ubuntu1 libquadmath0_10-20200425-1ubuntu2 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu1 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-5 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200425-1ubuntu2 libsub-override-perl_0.09-2 libsystemd0_245.4-4ubuntu3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10-20200425-1ubuntu2 libubsan1_10-20200425-1ubuntu2 libuchardet0_0.0.6-3build1 libudev1_245.4-4ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-26.30 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.3 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu2 python-babel-localedata_2.6.0+dfsg.1-1ubuntu2 python3_3.8.2-0ubuntu2 python3-alabaster_0.7.8-1.1 python3-all_3.8.2-0ubuntu2 python3-babel_2.6.0+dfsg.1-1ubuntu2 python3-certifi_2019.11.28-2 python3-chardet_3.0.4-7 python3-decorator_4.4.2-0ubuntu1 python3-dicom_1.4.1-1 python3-distutils_3.8.2-1ubuntu1 python3-docutils_0.16+dfsg-2 python3-idna_2.8-2 python3-imagesize_1.2.0-2 python3-jinja2_2.11.1-1 python3-lib2to3_3.8.2-1ubuntu1 python3-markupsafe_1.1.1-1 python3-minimal_3.8.2-0ubuntu2 python3-mock_3.0.5-2 python3-nibabel_3.0.1-1 python3-nose_1.3.7-5 python3-numpy_1:1.17.4-5ubuntu3 python3-numpydoc_0.7.0-2 python3-packaging_20.3-1.2 python3-pbr_5.4.5-0ubuntu1 python3-pkg-resources_46.1.3-1 python3-pydicom_1.4.1-1 python3-pygments_2.3.1+dfsg-1ubuntu2 python3-pyparsing_2.4.6-2 python3-requests_2.22.0-2ubuntu1 python3-roman_2.0.0-4 python3-scipy_1.3.3-3build1 python3-setuptools_46.1.3-1 python3-six_1.14.0-3 python3-sphinx_1.8.5-7ubuntu3 python3-tz_2019.3-2 python3-urllib3_1.25.8-2 python3.8_3.8.2-1ubuntu1 python3.8-minimal_3.8.2-1ubuntu1 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dcmstack-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sgml-base_1.30 sphinx-common_1.8.5-7ubuntu3 systemd_245.4-4ubuntu3 systemd-sysv_245.4-4ubuntu3 systemd-timesyncd_245.4-4ubuntu3 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.34-0.1ubuntu9 xml-core_0.18+nmu1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Mar 5 21:35:34 2020 UTC gpgv: using RSA key C5B905F0E8D9FD9668FF366FA2DE235062DA33FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dcmstack_0.8-1.dsc dpkg-source: info: extracting dcmstack in dcmstack-0.8 dpkg-source: info: unpacking dcmstack_0.8.orig.tar.gz dpkg-source: info: unpacking dcmstack_0.8-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19222298 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19222298 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19222298 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dcmstack dpkg-buildpackage: info: source version 0.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ dh_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use) rm -f -- debian/python3-dcmstack.substvars debian/files rm -fr -- debian/python3-dcmstack/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -rf build .pybuild src/dcmstack.egg-info find . -name '*.pyc' -delete debian/rules build dh build --with python3,sphinxdoc --buildsystem=pybuild dh: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_update_autotools_config -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_configure: warning: Compatibility levels before 10 are deprecated (level 9 in use) pybuild --configure --test-nose -i python{version} -p 3.8 I: pybuild base:217: python3.8 setup.py config running config dh_auto_build -O--buildsystem=pybuild dh_auto_build: warning: Compatibility levels before 10 are deprecated (level 9 in use) pybuild --build --test-nose -i python{version} -p 3.8 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/nitool_cli.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/dcmstack.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/__init__.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/dcmmeta.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/utils.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/dcmstack_cli.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/info.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack copying src/dcmstack/extract.py -> /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test dh_auto_test: warning: Compatibility levels before 10 are deprecated (level 9 in use) pybuild --test --test-nose -i python{version} -p 3.8 I: pybuild base:217: cd /<>/.pybuild/cpython3_3.8_dcmstack/build; python3.8 -m nose -v test test.test_cli.TestDcmstackCli.test_basic ... /usr/lib/python3/dist-packages/nibabel/nifti1.py:1588: UserWarning: Multiple slice orders satisfy: sequential decreasing, alternating decreasing, alternating increasing 2. Choosing the first one warnings.warn( ok test.test_cli.TestDcmstackCli.test_embed ... ok test.test_cli.TestNitoolCli.test_basic ... ok test.test_dcmmeta.TestChangeClass.test_change_global_const ... ok test.test_dcmmeta.TestChangeClass.test_change_none ... ok test.test_dcmmeta.TestChangeClass.test_change_time_samples ... ok test.test_dcmmeta.TestChangeClass.test_change_vector_samples ... ok test.test_dcmmeta.TestChangeClass.test_time_slices ... ok test.test_dcmmeta.TestChangeClass.test_vector_slices ... ok test.test_dcmmeta.TestCheckValid.test_const ... ok test.test_dcmmeta.TestCheckValid.test_empty ... ok test.test_dcmmeta.TestCheckValid.test_global_slices ... ok test.test_dcmmeta.TestCheckValid.test_invalid_affine ... ok test.test_dcmmeta.TestCheckValid.test_invalid_shape ... ok test.test_dcmmeta.TestCheckValid.test_invalid_slice_dim ... ok test.test_dcmmeta.TestCheckValid.test_multiple_classes ... ok test.test_dcmmeta.TestCheckValid.test_time_samples ... ok test.test_dcmmeta.TestCheckValid.test_time_slices ... ok test.test_dcmmeta.TestCheckValid.test_vector_samples ... ok test.test_dcmmeta.TestCheckValid.test_vector_slices ... ok test.test_dcmmeta.TestFiltering.test_clear_slices ... ok test.test_dcmmeta.TestFiltering.test_filter_all ... ok test.test_dcmmeta.TestFiltering.test_filter_some ... ok test.test_dcmmeta.TestGetKeysClassesValues.test_get_class_dict ... ok test.test_dcmmeta.TestGetKeysClassesValues.test_get_classification ... ok test.test_dcmmeta.TestGetKeysClassesValues.test_get_keys ... ok test.test_dcmmeta.TestGetKeysClassesValues.test_get_vals_and_class ... ok test.test_dcmmeta.TestGetKeysClassesValues.test_get_values ... ok test.test_dcmmeta.TestGetMeta.test_get_const ... ok test.test_dcmmeta.TestGetMeta.test_get_global_slices ... ok test.test_dcmmeta.TestGetMeta.test_get_item ... ok test.test_dcmmeta.TestGetMeta.test_get_time_slices ... ok test.test_dcmmeta.TestGetMeta.test_get_vector_samples ... ok test.test_dcmmeta.TestGetMeta.test_get_vector_slices ... ok test.test_dcmmeta.TestGetMeta.test_invalid_index ... ERROR test.test_dcmmeta.TestGetSubset.test_slice_subset ... ok test.test_dcmmeta.TestGetSubset.test_slice_subset_simplify ... ok test.test_dcmmeta.TestGetSubset.test_time_sample_subset ... ok test.test_dcmmeta.TestGetSubset.test_time_sample_subset_simplify ... ok test.test_dcmmeta.TestGetSubset.test_vector_sample_subset ... ok test.test_dcmmeta.TestGetSubset.test_vector_sample_subset_simplify ... ok test.test_dcmmeta.TestMetaValid.test_slice_dim_changed ... ok test.test_dcmmeta.TestMetaValid.test_slice_dir_changed ... ok test.test_dcmmeta.TestMetaValid.test_time_samples_changed ... ok test.test_dcmmeta.TestMetaValid.test_vector_samples_changed ... ok test.test_dcmmeta.TestSimplify.test_simplify_global_slices ... ok test.test_dcmmeta.TestSimplify.test_simplify_time_samples ... ok test.test_dcmmeta.TestSimplify.test_simplify_time_slices ... ok test.test_dcmmeta.TestSimplify.test_simplify_vector_samples ... ok test.test_dcmmeta.TestSimplify.test_simplify_vector_slices ... ok test.test_dcmmeta.TestSplit.test_split_slice ... /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/dcmmeta.py:1465: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. split_data = data[slices].copy() ok test.test_dcmmeta.TestSplit.test_split_time ... ok test.test_dcmmeta.TestSplit.test_split_vector ... ok test.test_dcmmeta.test_is_constant ... ok test.test_dcmmeta.test_is_repeating ... ok test.test_dcmmeta.test_get_valid_classes ... ok test.test_dcmmeta.test_get_mulitplicity_4d ... ok test.test_dcmmeta.test_get_mulitplicity_4d_vec ... ok test.test_dcmmeta.test_get_mulitplicity_5d ... ok test.test_dcmmeta.test_dcmmeta_affine ... ok test.test_dcmmeta.test_dcmmeta_slice_dim ... ok test.test_dcmmeta.test_dcmmeta_shape ... ok test.test_dcmmeta.test_dcmmeta_version ... ok test.test_dcmmeta.test_dcmmeta_slice_norm ... ok test.test_dcmmeta.test_dcmmeta_n_slices ... ok test.test_dcmmeta.test_simp_sngl_slc_5d ... ok test.test_dcmmeta.test_from_sequence_2d_to_3d ... ok test.test_dcmmeta.test_from_sequence_3d_to_4d ... ok test.test_dcmmeta.test_from_sequence_4d_time_to_5d ... ok test.test_dcmmeta.test_from_sequence_no_slc ... ok test.test_dcmmeta.test_nifti_wrapper_init ... ok test.test_dcmmeta.test_split_keep_spatial ... ok test.test_dcmmeta.test_from_dicom ... ok test.test_dcmmeta.test_from_2d_slice_to_3d ... /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/dcmmeta.py:1724: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use `arr[tuple(seq)]` instead of `arr[seq]`. In the future this will be interpreted as an array index, `arr[np.array(seq)]`, which will result either in an error or a different result. result_data[data_slices] = input_nii.get_data().squeeze() ok test.test_dcmmeta.test_from_3d_time_to_4d ... ok test.test_dcmmeta.test_from_3d_vector_to_4d ... ok test.test_dcmmeta.test_merge_inconsistent_hdr ... ok test.test_dcmmeta.test_merge_with_slc_and_without ... ok test.test_dcmstack.TestDicomOrdering.test_abs ... ok test.test_dcmstack.TestDicomOrdering.test_abs_as_str ... ok test.test_dcmstack.TestDicomOrdering.test_abs_missing ... ok test.test_dcmstack.TestDicomOrdering.test_missing_key ... ok test.test_dcmstack.TestDicomOrdering.test_non_abs ... ok test.test_dcmstack.TestGetAffine.test_single_slice ... ok test.test_dcmstack.TestGetAffine.test_three_dim ... ok test.test_dcmstack.TestGetData.test_allow_dummy ... ok test.test_dcmstack.TestGetData.test_five_dim ... ok test.test_dcmstack.TestGetData.test_four_dim ... ok test.test_dcmstack.TestGetData.test_single_slice ... ok test.test_dcmstack.TestGetData.test_three_dim ... ok test.test_dcmstack.TestGetShape.test_allow_dummy ... ok test.test_dcmstack.TestGetShape.test_five_dim ... ok test.test_dcmstack.TestGetShape.test_four_dim ... ok test.test_dcmstack.TestGetShape.test_single_slice ... ok test.test_dcmstack.TestGetShape.test_three_dim ... ok test.test_dcmstack.TestGuessDim.test_single_guess ... ok test.test_dcmstack.TestGuessDim.test_wrong_guess_first ... ok test.test_dcmstack.TestIncongruentImage.test_close_orientation ... ok test.test_dcmstack.TestIncongruentImage.test_close_pix_space ... ok test.test_dcmstack.TestIncongruentImage.test_columns ... ok test.test_dcmstack.TestIncongruentImage.test_orientation ... ok test.test_dcmstack.TestIncongruentImage.test_pix_space ... ok test.test_dcmstack.TestIncongruentImage.test_rows ... ok test.test_dcmstack.TestInvalidStack.test_empty ... ok test.test_dcmstack.TestInvalidStack.test_missing_slice ... ok test.test_dcmstack.TestInvalidStack.test_only_dummy ... ok test.test_dcmstack.TestInvalidStack.test_vector_var_over_vol ... ok test.test_dcmstack.TestInvalidStack.test_wrong_number_of_files ... ok test.test_dcmstack.TestParseAndGroup.test_default ... ok test.test_dcmstack.TestParseAndStack.test_default ... ok test.test_dcmstack.TestReorderVoxels.test_aniso_reorder ... ok test.test_dcmstack.TestReorderVoxels.test_invalid_affine ... ok test.test_dcmstack.TestReorderVoxels.test_invalid_vox_array ... ok test.test_dcmstack.TestReorderVoxels.test_invalid_vox_order ... ok test.test_dcmstack.TestReorderVoxels.test_no_op ... ok test.test_dcmstack.TestReorderVoxels.test_reorder ... ok test.test_dcmstack.TestToNifti.test_allow_dummies ... ok test.test_dcmstack.TestToNifti.test_single_slice ... ok test.test_dcmstack.TestToNifti.test_single_vol ... ok test.test_dcmstack.TestToNifti.test_slice_dim_reorient ... ok test.test_dcmstack.TestToNifti.test_two_time_vol ... ok test.test_dcmstack.TestToNifti.test_two_vector_vol ... ok test.test_dcmstack.test_key_regex_filter ... ok test.test_dcmstack.test_dcm_time_to_sec ... ok test.test_dcmstack.test_image_collision ... ok test.test_dcmstack.test_fsl_hack ... ok test.test_dcmstack.test_pix_overflow ... ok test.test_extract.TestCsa.test_csa_image_trans ... ok test.test_extract.TestCsa.test_csa_series_trans ... ok test.test_extract.TestCsa.test_parse_phx_line ... ok test.test_extract.TestCsa.test_simplify ... ok test.test_extract.TestMetaExtractor.test_dup_trans ... ok test.test_extract.TestMetaExtractor.test_get_elem_key ... ok test.test_extract.TestMetaExtractor.test_get_elem_value ... ok test.test_extract.TestMetaExtractor.test_non_reloc_private ... ok test.test_extract.TestMetaExtractor.test_reloc_private ... ok ====================================================================== ERROR: test.test_dcmmeta.TestGetMeta.test_invalid_index ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<>/.pybuild/cpython3_3.8_dcmstack/build/test/test_dcmmeta.py", line 991, in test_invalid_index assert_raises(IndexError, File "/usr/lib/python3.8/unittest/case.py", line 816, in assertRaises return context.handle('assertRaises', args, kwargs) File "/usr/lib/python3.8/unittest/case.py", line 202, in handle callable_obj(*args, **kwargs) TypeError: 'NoneType' object is not callable ---------------------------------------------------------------------- Ran 136 tests in 3.913s FAILED (errors=1) E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd /<>/.pybuild/cpython3_3.8_dcmstack/build; python3.8 -m nose -v test dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 returned exit code 13 make[1]: [debian/rules:46: override_dh_auto_test] Error 25 (ignored) make[1]: Leaving directory '/<>' fakeroot debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-dcmstack.substvars rm -fr -- debian/.debhelper/generated/python3-dcmstack/ debian/python3-dcmstack/ debian/tmp/ dh_auto_install -O--buildsystem=pybuild dh_auto_install: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -d debian/python3-dcmstack pybuild --install --test-nose -i python{version} -p 3.8 --dest-dir /<>/debian/python3-dcmstack I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-dcmstack running install running build running build_py running install_lib creating /<>/debian/python3-dcmstack/usr creating /<>/debian/python3-dcmstack/usr/lib creating /<>/debian/python3-dcmstack/usr/lib/python3.8 creating /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages creating /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/nitool_cli.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/dcmstack.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__init__.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/dcmmeta.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/utils.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/dcmstack_cli.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack creating /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/utils.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/dcmstack_cli.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/extract.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/nitool_cli.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/dcmstack.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/info.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/__pycache__/dcmmeta.cpython-38.pyc -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__pycache__ copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/info.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack copying /<>/.pybuild/cpython3_3.8_dcmstack/build/dcmstack/extract.py -> /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/nitool_cli.py to nitool_cli.cpython-38.pyc byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/dcmstack.py to dcmstack.cpython-38.pyc byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/dcmmeta.py to dcmmeta.cpython-38.pyc byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/utils.py to utils.cpython-38.pyc byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/dcmstack_cli.py to dcmstack_cli.cpython-38.pyc byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/info.py to info.cpython-38.pyc byte-compiling /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack/extract.py to extract.cpython-38.pyc running install_egg_info running egg_info creating src/dcmstack.egg-info writing src/dcmstack.egg-info/PKG-INFO writing dependency_links to src/dcmstack.egg-info/dependency_links.txt writing entry points to src/dcmstack.egg-info/entry_points.txt writing requirements to src/dcmstack.egg-info/requires.txt writing top-level names to src/dcmstack.egg-info/top_level.txt writing manifest file 'src/dcmstack.egg-info/SOURCES.txt' reading manifest file 'src/dcmstack.egg-info/SOURCES.txt' writing manifest file 'src/dcmstack.egg-info/SOURCES.txt' Copying src/dcmstack.egg-info to /<>/debian/python3-dcmstack/usr/lib/python3.8/dist-packages/dcmstack-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing dcmstack script to /<>/debian/python3-dcmstack/usr/bin Installing nitool script to /<>/debian/python3-dcmstack/usr/bin I: pybuild pybuild:310: mkdir -p build/man ; PYTHONPATH=/<>/.pybuild/cpython3_3.8_dcmstack/build help2man --no-discard-stderr --no-info -o build/man/dcmstack.1 --name "DICOM to NIfTI converter" debian/python3-dcmstack/usr/bin/dcmstack ; PYTHONPATH=/<>/.pybuild/cpython3_3.8_dcmstack/build help2man --no-discard-stderr --no-info -o build/man/nitool.1 --name "meta data manipulation tool for dcmstack-enhanced NIfTI images" debian/python3-dcmstack/usr/bin/nitool debian/rules override_dh_installdocs make[1]: Entering directory '/<>' PYTHONPATH=. http_proxy='127.0.0.1:9' python3 -m sphinx -N -bhtml doc/ build/html Running Sphinx v1.8.5 making output directory... building [mo]: targets for 0 po files that are out of date building [html]: targets for 7 source files that are out of date updating environment: 7 added, 0 changed, 0 removed reading sources... [ 14%] CLI_Tutorial reading sources... [ 28%] DcmMeta_Extension reading sources... [ 42%] Introduction reading sources... [ 57%] Python_Tutorial reading sources... [ 71%] dcmstack reading sources... [ 85%] index reading sources... [100%] modules /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomOrdering:38: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomOrdering.get_ordinate' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:52: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.affine' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:52: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.data' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:52: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.shape' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:61: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.add_dcm' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:61: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.clear' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:61: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.get_affine' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:61: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.get_data' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:61: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.get_shape' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:61: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.to_nifti' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:61: WARNING: toctree references unknown document 'dcmstack.dcmstack.DicomStack.to_nifti_wrapper' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom_wrapper' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.from_filename' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.from_sequence' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.get_meta' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.meta_valid' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.remove_extension' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.replace_extension' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.split' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:41: WARNING: toctree references unknown document 'dcmstack.dcmmeta.NiftiWrapper.to_filename' /<>/src/dcmstack/extract.py:docstring of dcmstack.extract.MetaExtractor:46: WARNING: toctree references unknown document 'dcmstack.extract.MetaExtractor.__call__' /<>/src/dcmstack/extract.py:docstring of dcmstack.extract.Translator:21: WARNING: toctree references unknown document 'dcmstack.extract.Translator.count' /<>/src/dcmstack/extract.py:docstring of dcmstack.extract.Translator:21: WARNING: toctree references unknown document 'dcmstack.extract.Translator.index' looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 14%] CLI_Tutorial writing output... [ 28%] DcmMeta_Extension writing output... [ 42%] Introduction writing output... [ 57%] Python_Tutorial writing output... [ 71%] dcmstack writing output... [ 85%] index writing output... [100%] modules /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomOrdering.get_ordinate:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomOrdering.get_ordinate' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:58::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.affine' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:58::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.data' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:58::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.shape' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack.add_dcm:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.add_dcm' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack.add_dcm:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.clear' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack.add_dcm:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_affine' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack.add_dcm:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_data' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack.add_dcm:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_shape' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack.add_dcm:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.to_nifti' /<>/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack.add_dcm:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.to_nifti_wrapper' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom_wrapper' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_filename' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_sequence' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.get_meta' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.meta_valid' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.remove_extension' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.replace_extension' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.split' /<>/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper.from_dicom:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.to_filename' /<>/src/dcmstack/extract.py:docstring of dcmstack.extract.MetaExtractor:49::: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.MetaExtractor.__call__' /<>/src/dcmstack/extract.py:docstring of dcmstack.extract.Translator.name:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.Translator.count' /<>/src/dcmstack/extract.py:docstring of dcmstack.extract.Translator.name:1::: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.Translator.index' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomOrdering.get_ordinate' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.affine' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.data' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.shape' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.add_dcm' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.clear' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_affine' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_data' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_shape' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.to_nifti' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.to_nifti_wrapper' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom_wrapper' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_filename' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_sequence' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.get_meta' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.meta_valid' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.remove_extension' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.replace_extension' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.split' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.to_filename' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.MetaExtractor.__call__' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.Translator.count' /<>/doc/index.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.Translator.index' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomOrdering.get_ordinate' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.affine' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.data' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.shape' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.add_dcm' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.clear' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_affine' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_data' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.get_shape' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.to_nifti' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmstack.DicomStack.to_nifti_wrapper' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_dicom_wrapper' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_filename' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.from_sequence' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.get_meta' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.meta_valid' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.remove_extension' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.replace_extension' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.split' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.dcmmeta.NiftiWrapper.to_filename' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.MetaExtractor.__call__' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.Translator.count' /<>/doc/modules.rst:: WARNING: toctree contains reference to nonexisting document 'dcmstack.extract.Translator.index' generating indices... genindex py-modindex writing additional pages... search copying static files... done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 96 warnings. The HTML pages are in build/html. dh_installdocs dh_installdocs: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -d debian/python3-dcmstack/usr/share/doc/python3-dcmstack install -d debian/.debhelper/generated/python3-dcmstack cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/python3-dcmstack/usr/share/doc/python3-dcmstack chown -R 0:0 debian/python3-dcmstack/usr/share/doc chmod -R u\+rw,go=rX debian/python3-dcmstack/usr/share/doc install -p -m0644 debian/TODO debian/python3-dcmstack/usr/share/doc/python3-dcmstack/TODO.Debian install -p -m0644 debian/copyright debian/python3-dcmstack/usr/share/doc/python3-dcmstack/copyright make[1]: Leaving directory '/<>' dh_sphinxdoc -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/underscore.js ln -sf ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/jquery.js ln -sf ../../../../javascript/sphinxdoc/1.0/sidebar.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sidebar.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/doctools.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/searchtools.js rm -rf debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/.doctrees rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/.buildinfo (grep -a -s -v sphinxdoc:Depends debian/python3-dcmstack.substvars; echo "sphinxdoc:Depends=libjs-sphinxdoc (>= 1.0)") > debian/python3-dcmstack.substvars.new mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars (grep -a -s -v sphinxdoc:Built-Using debian/python3-dcmstack.substvars; echo "sphinxdoc:Built-Using=sphinx (= 1.8.5-7ubuntu3)") > debian/python3-dcmstack.substvars.new mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/python3-dcmstack/usr/share/doc/python3-dcmstack/changelog.Debian dh_installman -O--buildsystem=pybuild dh_installman: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -d debian/python3-dcmstack/usr/share/man/man1/ install -p -m0644 ./build/man/dcmstack.1 debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 install -p -m0644 ./build/man/nitool.1 debian/python3-dcmstack/usr/share/man/man1/nitool.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-dcmstack/usr/share/man/man1/nitool.1 mv debian/python3-dcmstack/usr/share/man/man1/nitool.1.dh-new debian/python3-dcmstack/usr/share/man/man1/nitool.1 chmod 0644 -- debian/python3-dcmstack/usr/share/man/man1/nitool.1 mv debian/python3-dcmstack/usr/share/man/man1/dcmstack.1.dh-new debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 chmod 0644 -- debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20200315 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.8 (default=3.8) D: dh_python3 debhelper:152: source=dcmstack, binary packages=['python3-dcmstack'] D: dh_python3 dh_python3:183: processing package python3-dcmstack... D: dh_python3 fs:49: moving files from debian/python3-dcmstack/usr/lib/python3.8/dist-packages to debian/python3-dcmstack/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-dcmstack details = {'requires.txt': {'debian/python3-dcmstack/usr/lib/python3/dist-packages/dcmstack-0.8.0.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-dcmstack D: dh_python3 pydist:137: trying to find dependency for nibabel>=2.1.0 (python=None) D: dh_python3 pydist:137: trying to find dependency for pydicom>=0.9.7 (python=None) D: dh_python3 depends:275: D={'python3:any', 'python3-pydicom', 'python3-nibabel (>= 2.0~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild dh_installinit: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/doctools.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/jquery.js ln -s ../../../../javascript/sphinxdoc/1.0/jquery.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/jquery.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sidebar.js ln -s ../../../../javascript/sphinxdoc/1.0/sidebar.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sidebar.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/underscore.js ln -s ../../../../javascript/sphinxdoc/1.0/underscore.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/underscore.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/searchtools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1583443759 as canonical time Normalizing debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/minus.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use) cd debian/python3-dcmstack chmod a-x usr/share/doc/python3-dcmstack/changelog.Debian usr/share/man/man1/dcmstack.1 usr/share/man/man1/nitool.1 gzip -9nf usr/share/doc/python3-dcmstack/changelog.Debian usr/share/man/man1/dcmstack.1 usr/share/man/man1/nitool.1 cd '/<>' dh_fixperms -O--buildsystem=pybuild find debian/python3-dcmstack -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-dcmstack ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-dcmstack/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-dcmstack/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-dcmstack/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-dcmstack/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-dcmstack -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-dcmstack/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-dcmstack/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_missing: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installdeb -O--buildsystem=pybuild dh_installdeb: warning: Compatibility levels before 10 are deprecated (level 9 in use) install -d debian/python3-dcmstack/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-dcmstack/DEBIAN/postinst cat debian/python3-dcmstack.postinst.debhelper >> debian/python3-dcmstack/DEBIAN/postinst chmod 0755 -- debian/python3-dcmstack/DEBIAN/postinst chown 0:0 -- debian/python3-dcmstack/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-dcmstack/DEBIAN/prerm cat debian/python3-dcmstack.prerm.debhelper >> debian/python3-dcmstack/DEBIAN/prerm chmod 0755 -- debian/python3-dcmstack/DEBIAN/prerm chown 0:0 -- debian/python3-dcmstack/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-dcmstack.substvars echo misc:Pre-Depends= >> debian/python3-dcmstack.substvars dpkg-gencontrol -ppython3-dcmstack -ldebian/changelog -Tdebian/python3-dcmstack.substvars -Pdebian/python3-dcmstack -UMulti-Arch dpkg-gencontrol: warning: Provides field of package python3-dcmstack: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: package python3-dcmstack: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/python3-dcmstack/DEBIAN/control chown 0:0 -- debian/python3-dcmstack/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/python3-dcmstack >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-dcmstack/DEBIAN/md5sums chown 0:0 -- debian/python3-dcmstack/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --build debian/python3-dcmstack .. INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-dcmstack (in debian/python3-dcmstack); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-dcmstack/DEBIAN/control, package python3-dcmstack, directory debian/python3-dcmstack pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-dcmstack ... ... pkgstripfiles: PNG optimization (0/0) for package python3-dcmstack took 1 s dpkg-deb: building package 'python3-dcmstack' in '../python3-dcmstack_0.8-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../dcmstack_0.8-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200427-2237 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ dcmstack_0.8-1_amd64.changes: ----------------------------- Format: 1.8 Date: Thu, 05 Mar 2020 16:29:19 -0500 Source: dcmstack Binary: python3-dcmstack Architecture: all Version: 0.8-1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Yaroslav Halchenko Description: python3-dcmstack - DICOM to NIfTI conversion - python3 package Closes: 946992 Changes: dcmstack (0.8-1) unstable; urgency=medium . * Fresh upstream release - should resolve incompatibility with fresh nibabel * debian/control - Announce that it conflicts with python-dcmstack because they both provide /usr/bin scripts; Closes: #946992 * debian/gbp.conf - Added to facilitate usability of our non-standard VCS setup Checksums-Sha1: 5b8602b72ccfc75fc3cd026646ea1661ec2ea93a 6998 dcmstack_0.8-1_amd64.buildinfo 910af05d09785d498a8444b60d348e66e8a4b385 75004 python3-dcmstack_0.8-1_all.deb Checksums-Sha256: c5211a7395a1c688f93f77978522aa1647369c3ca259eadd4446092dae208eaf 6998 dcmstack_0.8-1_amd64.buildinfo eed24bca173a481c806ab90eb25ca2e679a129ace1a421aebe4deccdc231e30b 75004 python3-dcmstack_0.8-1_all.deb Files: 7fe7bac605e611dc526f102f1f34ff2b 6998 science optional dcmstack_0.8-1_amd64.buildinfo b7f5c2457ddac0f6276931931eae8369 75004 science optional python3-dcmstack_0.8-1_all.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-dcmstack_0.8-1_all.deb ------------------------------ new debian package, version 2.0. size 75004 bytes: control archive=2436 bytes. 791 bytes, 18 lines control 4199 bytes, 48 lines md5sums 257 bytes, 12 lines * postinst #!/bin/sh 406 bytes, 12 lines * prerm #!/bin/sh Package: python3-dcmstack Source: dcmstack Version: 0.8-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: NeuroDebian Team Installed-Size: 512 Depends: python3-dicom (>= 0.9.7~), python3-nibabel (>= 2.0~), python3-numpy, python3-pydicom, python3:any, libjs-sphinxdoc (>= 1.0) Conflicts: python-dcmstack Section: science Priority: optional Homepage: https://github.com/moloney/dcmstack Description: DICOM to NIfTI conversion - python3 package DICOM to NIfTI conversion with the added ability to extract and summarize meta data from the source DICOMs. The meta data can be injected into a NIfTI header extension or written out as a JSON formatted text file. . This package provides the Python3 package. drwxr-xr-x root/root 0 2020-03-05 21:29 ./ drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/ drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/bin/ -rwxr-xr-x root/root 387 2020-03-05 21:29 ./usr/bin/dcmstack -rwxr-xr-x root/root 383 2020-03-05 21:29 ./usr/bin/nitool drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/lib/ drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/lib/python3/dist-packages/dcmstack-0.8.0.egg-info/ -rw-r--r-- root/root 716 2020-03-05 21:29 ./usr/lib/python3/dist-packages/dcmstack-0.8.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2020-03-05 21:29 ./usr/lib/python3/dist-packages/dcmstack-0.8.0.egg-info/dependency_links.txt -rw-r--r-- root/root 91 2020-03-05 21:29 ./usr/lib/python3/dist-packages/dcmstack-0.8.0.egg-info/entry_points.txt -rw-r--r-- root/root 36 2020-03-05 21:29 ./usr/lib/python3/dist-packages/dcmstack-0.8.0.egg-info/requires.txt -rw-r--r-- root/root 9 2020-03-05 21:29 ./usr/lib/python3/dist-packages/dcmstack-0.8.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/lib/python3/dist-packages/dcmstack/ -rw-r--r-- root/root 288 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/__init__.py -rw-r--r-- root/root 70562 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/dcmmeta.py -rw-r--r-- root/root 45466 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/dcmstack.py -rw-r--r-- root/root 15558 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/dcmstack_cli.py -rw-r--r-- root/root 18012 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/extract.py -rw-r--r-- root/root 1879 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/info.py -rw-r--r-- root/root 9904 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/nitool_cli.py -rw-r--r-- root/root 393 2020-02-18 22:20 ./usr/lib/python3/dist-packages/dcmstack/utils.py drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/share/ drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/ -rw-r--r-- root/root 45 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/TODO.Debian -rw-r--r-- root/root 773 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/changelog.Debian.gz -rw-r--r-- root/root 1429 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/copyright drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/ -rw-r--r-- root/root 16538 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/CLI_Tutorial.html -rw-r--r-- root/root 46541 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/DcmMeta_Extension.html -rw-r--r-- root/root 11695 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/Introduction.html -rw-r--r-- root/root 25974 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/Python_Tutorial.html drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_sources/ -rw-r--r-- root/root 7895 2020-02-18 22:20 ./usr/share/doc/python3-dcmstack/html/_sources/CLI_Tutorial.rst.txt -rw-r--r-- root/root 17531 2020-02-18 22:20 ./usr/share/doc/python3-dcmstack/html/_sources/DcmMeta_Extension.rst.txt -rw-r--r-- root/root 3280 2020-02-18 22:20 ./usr/share/doc/python3-dcmstack/html/_sources/Introduction.rst.txt -rw-r--r-- root/root 6999 2020-02-18 22:20 ./usr/share/doc/python3-dcmstack/html/_sources/Python_Tutorial.rst.txt -rw-r--r-- root/root 507 2020-02-18 22:20 ./usr/share/doc/python3-dcmstack/html/_sources/dcmstack.rst.txt -rw-r--r-- root/root 514 2020-02-18 22:20 ./usr/share/doc/python3-dcmstack/html/_sources/index.rst.txt -rw-r--r-- root/root 79 2020-02-18 22:20 ./usr/share/doc/python3-dcmstack/html/_sources/modules.rst.txt drwxr-xr-x root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/ -rw-r--r-- root/root 10912 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/basic.css -rw-r--r-- root/root 4146 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/classic.css -rw-r--r-- root/root 28 2019-03-09 14:07 ./usr/share/doc/python3-dcmstack/html/_static/default.css lrwxrwxrwx root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/doctools.js -> ../../../../javascript/sphinxdoc/1.0/doctools.js -rw-r--r-- root/root 307 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/documentation_options.js -rw-r--r-- root/root 286 2019-03-09 14:07 ./usr/share/doc/python3-dcmstack/html/_static/file.png lrwxrwxrwx root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/jquery.js -> ../../../../javascript/sphinxdoc/1.0/jquery.js -rw-r--r-- root/root 10847 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/language_data.js -rw-r--r-- root/root 90 2019-03-09 14:07 ./usr/share/doc/python3-dcmstack/html/_static/minus.png -rw-r--r-- root/root 90 2019-03-09 14:07 ./usr/share/doc/python3-dcmstack/html/_static/plus.png -rw-r--r-- root/root 4395 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/pygments.css lrwxrwxrwx root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/searchtools.js -> ../../../../javascript/sphinxdoc/1.0/searchtools.js lrwxrwxrwx root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/sidebar.js -> ../../../../javascript/sphinxdoc/1.0/sidebar.js lrwxrwxrwx root/root 0 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/_static/underscore.js -> ../../../../javascript/sphinxdoc/1.0/underscore.js -rw-r--r-- root/root 79144 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/dcmstack.html -rw-r--r-- root/root 16167 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/genindex.html -rw-r--r-- root/root 7531 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/index.html -rw-r--r-- root/root 5549 2020-03-05 21:29 ./usr/share/doc/python3-dcmstack/html/modules.html 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 5384 Build-Time: 18 Distribution: groovy-proposed Host Architecture: amd64 Install-Time: 44 Job: dcmstack_0.8-1.dsc Machine Architecture: amd64 Package: dcmstack Package-Time: 63 Source-Version: 0.8-1 Space: 5384 Status: successful Version: 0.8-1 -------------------------------------------------------------------------------- Finished at 20200427-2237 Build needed 00:01:03, 5384k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19222298 Scanning for processes to kill in build PACKAGEBUILD-19222298