debian-med 3.7 source package in Ubuntu

Changelog

debian-med (3.7) unstable; urgency=medium

  * Re-render metapackages according the package pool in bullseye

  * start of automatic changelog entry * 
  
  * Changes in metapackage dependencies
   -med-bio
    added:
      Recommends:  bio-vcf, uncalled, covpipe, fastani, bioawk, bamclipper
      Suggests:  r-bioc-structuralvariantannotation
   -med-bio-dev
    added:
      Recommends:  libbio-db-ncbihelper-perl, libbio-variation-perl,
                   python3-scanpy, libbio-db-biofetch-perl, libbio-db-embl-perl,
                   python3-wdlparse, pangolearn, libpdb-redo-dev
      Suggests:  r-bioc-structuralvariantannotation
   -med-covid-19
    added:
      Recommends:  uncalled, covpipe, fastani, python3-scanpy, nthash,
                   bamclipper
   -med-epi
    added:
      Suggests:  python3-epimodels
   -med-imaging
    added:
      Recommends:  python3-nipype, bart-cuda
    removed:
      Suggests:  python-nipype
   -med-imaging-dev
    added:
      Recommends:  python3-nipype, python3-brian, python3-vigra
    removed:
      Suggests:  python-vigra, python-nipype

 -- Andreas Tille <email address hidden>  Mon, 03 May 2021 21:28:56 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Builds

Jammy: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
debian-med_3.7.dsc 2.9 KiB 6161a5dbd5cf95173675fb2876ab05d320679af86302337a998f473d4247c0a7
debian-med_3.7.tar.xz 120.7 KiB ecbadd49f5c40fc89a8dadfe0ea2a3dcd4cd1af126aec0af5d71c5852b7db246

Available diffs

No changes file available.

Binary packages built by this source

med-all: Default selection of tasks for Debian Med

 This package is part of the Debian Med Pure Blend and installs all
 tasks for a default installation of this blend.

med-bio: Debian Med bioinformatics packages

 This metapackage will install Debian packages for use in molecular biology,
 structural biology and other biological sciences.

med-bio-dev: Debian Med packages for development of bioinformatics applications

 This metapackage will install Debian packages which might be helpful
 for development of applications for biological research.

med-cloud: Debian Med bioinformatics applications usable in cloud computing

 This metapackage will install Debian packages related to molecular biology,
 structural biology and bioinformatics for use in life sciences, that do not
 depend on graphical toolkits and therefore can fit on system images for use
 in cloud computing clusters, where space can be limited.

med-config: Debian Med general config package

 This package provides the basic infrastructure of all metapackages assembled
 by the Debian Med team.
 .
 This metapackage provides common features shared between the different
 metapackages of the project. Moreover it introduces a method to handle a
 'med' system users group using debconf.
 .
 The Debian Med Project include metapackages for different tasks, which are:
  * applications for microbiological research and support for development of
    biological applications
  * cloud computing in microbiological research
  * drug databases
  * dental surgery practice
  * epidemiology and medical statistics
  * image processing and support for imaging application development
  * pharmacological research
  * radiation oncology, diagnostic imaging and related fields
  * medical practice
  * psychological research and practice
  * rehabilitation
  * typesetting and publishing
  * miscellaneous tools
 .
 Each task is represented by a metapackage. Metapackages do not contain
 executable programs, but rather dependencies from other packages. This way
 you will conveniently get all free medical software which is available for
 Debian by simply installing the relevant metapackage

med-data: Debian Med drug databases

 This metapackage will install free drug databases and related
 applications. The database can be accessed by any EMR using
 the application.

med-dental: Debian Med packages related to dental practice

 This metapackage contains dependencies for a collection of software
 which might be helpful for dentists to manage their practice.

med-epi: Debian Med epidemiology related packages

 This metapackage will install tools that are useful in epidemiological
 research. Several packages making use of the GNU R data language for
 statistical investigation. It might be a good idea to read the paper
 "A short introduction to R for Epidemiology" at
 http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf

med-his: Debian Med suggestions for Hospital Information Systems

 This metapackage contains dependencies for software and that could
 be useful ro run a Hospital Information System. While there is
 continuous work going on to package a ready to install system currently
 only preconditions are finished but hopefully helpful in hospitals
 anyway.

med-imaging: Debian Med image processing and visualization packages

 This metapackage will install Debian packages which might be useful in
 medical image processing and visualization.
 .
 On one hand, it installs several packages supporting various image file
 formats and image management, like DICOM (Digital Imaging and
 Communications in Medicine) which is the de-facto standard for medical
 image management, and NIFTI. On the other hand, it provides a variety of
 software packages that can be used for visualization and for image processing
 - either from a graphical user interface, the command line, or implemented in
 workflows.

med-imaging-dev: Debian Med image processing and visualization packages development

 This metapackage will install Debian packages which might be useful
 for developing applications for medical image processing and
 visualization.

med-laboratory: Debian Med suggestions for medical laboratories

 This metapackage contains dependencies for software and that could
 be useful ro run a medical laboratory.

med-oncology: Debian Med packages for oncology

 This metapackage will install tools that are useful for radiation
 oncology.

med-pharmacy: Debian Med packages for pharmaceutical research

 This metapackage contains dependencies for a
 collection of software and documentation which is useful for
 pharmaceutical research.

med-physics: Debian Med packages for medical physicists

 This metapackage contains dependencies for a
 collection of software and documentation which is useful for
 medical physicists in radiation oncology, diagnostics imaging
 and related fields.

med-practice: Debian Med packages for practice management

 This metapackage contains dependencies for a collection of software
 which might be helpful for practitioners to manage their practice.

med-psychology: Debian Med packages for psychology

 This metapackage contains dependencies for a collection of software
 which might be helpful for psychological research.

med-research: Debian Med packages for medical research

 This metapackage will install tools that are useful for
 medical research.

med-statistics: Debian Med statistics

 This metapackage will install packages which are helpful to do statistics
 with a special focus on tasks in medical care.

med-tasks: Debian Med tasks for tasksel

 This package provides Debian Med tasks in tasksel.
 .
 These tasks are described in detail at
 https://blends.debian.org/med/tasks/

med-tools: Debian Med several tools

 This metapackage will install tools for several purposes in health care.
 Currently it contains some simple programs for Personal Health.

med-typesetting: Debian Med support for typesetting and publishing

 This metapackage will install Debian packages that might be helpful
 for typesetting and publishing in medical care and structural
 biology.