https://launchpad.net/ubuntu/+source/delly/1.1.3-1/+build/24269235 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-050 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_218~581~ubuntu20.04.1 python3-lpbuildd_218~581~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 11 Aug 17:32:17 ntpdate[1811]: adjust time server 10.211.37.1 offset 0.000054 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24269235 --image-type chroot /home/buildd/filecache-default/46a86ed06ad4eec780192fe4231116bc064b7a44 Creating target for build PACKAGEBUILD-24269235 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24269235 Starting target for build PACKAGEBUILD-24269235 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24269235 'deb http://ftpmaster.internal/ubuntu kinetic main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-security main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-updates main universe' 'deb http://ftpmaster.internal/ubuntu kinetic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24269235 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24269235 Updating target for build PACKAGEBUILD-24269235 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main arm64 Packages [1380 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe arm64 Packages [13.7 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5784 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 Packages [161 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main Translation-en [48.9 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/universe arm64 Packages [551 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/universe Translation-en [215 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted arm64 Packages [43.0 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/restricted Translation-en [16.0 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse arm64 Packages [18.9 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/multiverse Translation-en [11.8 kB] Fetched 23.0 MB in 10s (2407 kB/s) Reading package lists... W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (main/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Translations (universe/i18n/Translation-en) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-11 libstdc++-11-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-12 g++-12 gcc-12 libasan8 libfdisk1 libgcc-12-dev libgprofng0 libstdc++-12-dev libtsan2 sgml-base util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-aarch64-linux-gnu binutils-common bsdutils cpp cpp-11 dash debianutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-11 gcc gcc-11 gcc-11-base gcc-12-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpcre3 libperl5.34 libpng16-16 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base perl-modules-5.34 pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils zlib1g 120 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 300 MB of archives. After this operation, 702 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcrypt-dev arm64 1:4.4.28-2 [120 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcrypt1 arm64 1:4.4.28-2 [84.9 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main arm64 base-files arm64 12.2ubuntu2 [73.3 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main arm64 bsdutils arm64 1:2.38-4ubuntu1 [83.9 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main arm64 debianutils arm64 5.7-0.3 [103 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main arm64 libzstd1 arm64 1.5.2+dfsg-1 [249 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgpg-error0 arm64 1.45-2 [68.6 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgcrypt20 arm64 1.10.1-2ubuntu1 [467 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libatomic1 arm64 12.1.0-8ubuntu1 [10.7 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libubsan1 arm64 12.1.0-8ubuntu1 [956 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 liblsan0 arm64 12.1.0-8ubuntu1 [1027 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libitm1 arm64 12.1.0-8ubuntu1 [27.8 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libhwasan0 arm64 12.1.0-8ubuntu1 [1109 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libgomp1 arm64 12.1.0-8ubuntu1 [122 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 gcc-12-base arm64 12.1.0-8ubuntu1 [19.5 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libgcc-s1 arm64 12.1.0-8ubuntu1 [39.5 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libcc1-0 arm64 12.1.0-8ubuntu1 [44.1 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libstdc++6 arm64 12.1.0-8ubuntu1 [647 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblzma5 arm64 5.2.5-2.1 [97.6 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main arm64 libblkid1 arm64 2.38-4ubuntu1 [103 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main arm64 libuuid1 arm64 2.38-4ubuntu1 [23.2 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main arm64 libfdisk1 arm64 2.38-4ubuntu1 [140 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main arm64 systemd-sysv arm64 251.2-2ubuntu2 [11.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main arm64 libapparmor1 arm64 3.0.4-3ubuntu1 [37.9 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjson-c5 arm64 0.16-1 [33.2 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main arm64 libssl3 arm64 3.0.4-1ubuntu1 [1763 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcryptsetup12 arm64 2:2.5.0-1ubuntu1 [216 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main arm64 libip4tc2 arm64 1.8.7-1ubuntu6 [19.6 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpcre2-8-0 arm64 10.40-1 [210 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main arm64 libselinux1 arm64 3.4-1 [77.2 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmount1 arm64 2.38-4ubuntu1 [120 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpam0g arm64 1.4.0-13ubuntu1 [60.1 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main arm64 libseccomp2 arm64 2.5.4-1ubuntu1 [46.5 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main arm64 mount arm64 2.38-4ubuntu1 [113 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsemanage-common all 3.4-1 [9828 B] Get:36 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsepol2 arm64 3.4-2 [285 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsemanage2 arm64 3.4-1 [89.7 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpam-modules-bin arm64 1.4.0-13ubuntu1 [38.6 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpam-modules arm64 1.4.0-13ubuntu1 [275 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main arm64 passwd arm64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main arm64 adduser all 3.121ubuntu1 [150 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main arm64 systemd arm64 251.2-2ubuntu2 [4550 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsystemd0 arm64 251.2-2ubuntu2 [320 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main arm64 libudev1 arm64 251.2-2ubuntu2 [80.0 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 zlib1g arm64 1:1.2.11.dfsg-2ubuntu10 [56.5 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main arm64 libapt-pkg6.0 arm64 2.5.2 [859 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main arm64 dpkg arm64 1.21.9ubuntu1 [1328 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main arm64 dash arm64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.4 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main arm64 login arm64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main arm64 ncurses-bin arm64 6.3+20220423-2 [183 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main arm64 libperl5.34 arm64 5.34.0-5ubuntu1 [4613 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main arm64 perl arm64 5.34.0-5ubuntu1 [231 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main arm64 perl-base arm64 5.34.0-5ubuntu1 [1689 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main arm64 perl-modules-5.34 all 5.34.0-5ubuntu1 [2952 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.10 [710 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsmartcols1 arm64 2.38-4ubuntu1 [49.4 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main arm64 util-linux-extra arm64 2.38-4ubuntu1 [81.4 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main arm64 util-linux arm64 2.38-4ubuntu1 [1069 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main arm64 init-system-helpers all 1.64 [38.7 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main arm64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main arm64 sgml-base all 1.30 [12.5 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main arm64 libidn2-0 arm64 2.3.3-1 [63.2 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main arm64 libp11-kit0 arm64 0.24.1-1 [232 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgnutls30 arm64 3.7.7-2ubuntu1 [931 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main arm64 gpgv arm64 2.2.27-3ubuntu3 [132 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main arm64 apt arm64 2.5.2 [1343 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main arm64 logsave arm64 1.46.5-2ubuntu2 [9768 B] Get:68 http://ftpmaster.internal/ubuntu kinetic/main arm64 libext2fs2 arm64 1.46.5-2ubuntu2 [208 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main arm64 e2fsprogs arm64 1.46.5-2ubuntu2 [580 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main arm64 init arm64 1.64 [5536 B] Get:71 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcap-ng0 arm64 0.8.3-1 [15.0 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpam-runtime all 1.4.0-13ubuntu1 [40.2 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpcre3 arm64 2:8.39-14 [231 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main arm64 libncurses6 arm64 6.3+20220423-2 [106 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main arm64 libncursesw6 arm64 6.3+20220423-2 [140 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtinfo6 arm64 6.3+20220423-2 [96.5 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcom-err2 arm64 1.46.5-2ubuntu2 [8868 B] Get:78 http://ftpmaster.internal/ubuntu kinetic/main arm64 libss2 arm64 1.46.5-2ubuntu2 [11.9 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main arm64 mawk arm64 1.3.4.20200120-3.1 [106 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgssapi-krb5-2 arm64 1.20-1 [139 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main arm64 libkrb5-3 arm64 1.20-1 [345 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main arm64 libkrb5support0 arm64 1.20-1 [31.2 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main arm64 libk5crypto3 arm64 1.20-1 [85.0 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main arm64 libkeyutils1 arm64 1.6.1-3ubuntu1 [9912 B] Get:85 http://ftpmaster.internal/ubuntu kinetic/main arm64 readline-common all 8.1.2-1.2 [53.6 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main arm64 libreadline8 arm64 8.1.2-1.2 [153 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsqlite3-0 arm64 3.39.2-1 [658 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtirpc-common all 1.3.2-2.1 [7602 B] Get:89 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtirpc-dev arm64 1.3.2-2.1 [199 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtirpc3 arm64 1.3.2-2.1 [81.4 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main arm64 openssl arm64 3.0.4-1ubuntu1 [1156 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpng16-16 arm64 1.6.37-5 [185 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main arm64 xz-utils arm64 5.2.5-2.1 [83.5 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main arm64 libctf0 arm64 2.38.90.20220713-2ubuntu1 [104 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main arm64 libctf-nobfd0 arm64 2.38.90.20220713-2ubuntu1 [108 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgprofng0 arm64 2.38.90.20220713-2ubuntu1 [918 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main arm64 libbinutils arm64 2.38.90.20220713-2ubuntu1 [816 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/main arm64 binutils arm64 2.38.90.20220713-2ubuntu1 [3258 B] Get:99 http://ftpmaster.internal/ubuntu kinetic/main arm64 binutils-common arm64 2.38.90.20220713-2ubuntu1 [225 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/main arm64 binutils-aarch64-linux-gnu arm64 2.38.90.20220713-2ubuntu1 [3605 kB] Get:101 http://ftpmaster.internal/ubuntu kinetic/main arm64 libisl23 arm64 0.25-1 [697 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 cpp-12 arm64 12.1.0-8ubuntu1 [61.3 MB] Get:103 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libasan8 arm64 12.1.0-8ubuntu1 [2383 kB] Get:104 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libtsan2 arm64 12.1.0-8ubuntu1 [2514 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libgcc-12-dev arm64 12.1.0-8ubuntu1 [1157 kB] Get:106 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 gcc-12 arm64 12.1.0-8ubuntu1 [69.5 MB] Get:107 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 libstdc++-12-dev arm64 12.1.0-8ubuntu1 [2153 kB] Get:108 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 g++-12 arm64 12.1.0-8ubuntu1 [66.3 MB] Get:109 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 g++ arm64 4:12.1.0-3ubuntu1 [1394 B] Get:110 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 gcc arm64 4:12.1.0-3ubuntu1 [5128 B] Get:111 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 cpp arm64 4:12.1.0-3ubuntu1 [27.4 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main arm64 g++-11 arm64 11.3.0-5ubuntu1 [11.1 MB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main arm64 libstdc++-11-dev arm64 11.3.0-5ubuntu1 [2065 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main arm64 libasan6 arm64 11.3.0-5ubuntu1 [2224 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main arm64 gcc-11 arm64 11.3.0-5ubuntu1 [19.3 MB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgcc-11-dev arm64 11.3.0-5ubuntu1 [1130 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtsan0 arm64 11.3.0-5ubuntu1 [2240 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main arm64 cpp-11 arm64 11.3.0-5ubuntu1 [9639 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main arm64 gcc-11-base arm64 11.3.0-5ubuntu1 [20.4 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main arm64 dpkg-dev all 1.21.9ubuntu1 [1070 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdpkg-perl all 1.21.9ubuntu1 [237 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/main arm64 lto-disabled-list all 32 [12.2 kB] Get:123 http://ftpmaster.internal/ubuntu kinetic/main arm64 libfakeroot arm64 1.29-1ubuntu1 [30.8 kB] Get:124 http://ftpmaster.internal/ubuntu kinetic/main arm64 fakeroot arm64 1.29-1ubuntu1 [60.1 kB] Get:125 http://ftpmaster.internal/ubuntu kinetic/main arm64 libassuan0 arm64 2.5.5-4 [35.3 kB] Get:126 http://ftpmaster.internal/ubuntu kinetic/main arm64 pinentry-curses arm64 1.2.0-2ubuntu1 [33.7 kB] Get:127 http://ftpmaster.internal/ubuntu kinetic/main arm64 gpg arm64 2.2.27-3ubuntu3 [501 kB] Get:128 http://ftpmaster.internal/ubuntu kinetic/main arm64 gpgconf arm64 2.2.27-3ubuntu3 [90.6 kB] Get:129 http://ftpmaster.internal/ubuntu kinetic/main arm64 gpg-agent arm64 2.2.27-3ubuntu3 [200 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 linux-libc-dev arm64 5.19.0-15.15 [1270 kB] Get:131 http://ftpmaster.internal/ubuntu kinetic/main arm64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 300 MB in 22s (13.7 MB/s) (Reading database ... 13432 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24269235 arm64 kinetic-proposed -c chroot:build-PACKAGEBUILD-24269235 --arch=arm64 --dist=kinetic-proposed --nolog delly_1.1.3-1.dsc Initiating build PACKAGEBUILD-24269235 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-050.buildd +==============================================================================+ | delly 1.1.3-1 (arm64) Thu, 11 Aug 2022 17:33:57 +0000 | +==============================================================================+ Package: delly Version: 1.1.3-1 Source Version: 1.1.3-1 Distribution: kinetic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24269235/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/delly-ZxGoAT/resolver-ESMPW6' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- delly_1.1.3-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/delly-ZxGoAT/delly-1.1.3' with '<>' I: NOTICE: Log filtering will replace 'build/delly-ZxGoAT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [438 B] Get:5 copy:/<>/apt_archive ./ Packages [515 B] Fetched 1910 B in 0s (51.6 kB/s) Reading package lists... Reading package lists... W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:4 and /etc/apt/sources.list.d/proposed.list:1 Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: g++-11 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu71 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config icu-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu71 libldap-2.5-0 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. 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libboost-system-dev arm64 1.74.0.3ubuntu7 [3390 B] Get:59 http://ftpmaster.internal/ubuntu kinetic/main arm64 libbrotli1 arm64 1.0.9-2build6 [314 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main arm64 libbz2-dev arm64 1.0.8-5build1 [34.5 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-6ubuntu1 [21.1 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsasl2-2 arm64 2.1.28+dfsg-6ubuntu1 [57.6 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main arm64 libldap-2.5-0 arm64 2.5.12+dfsg-2ubuntu1 [177 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build4 [59.2 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main arm64 libssh-4 arm64 0.9.6-2build1 [184 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcurl3-gnutls arm64 7.84.0-2ubuntu1 [280 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcurl4-gnutls-dev arm64 7.84.0-2ubuntu1 [387 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdeflate0 arm64 1.12-1 [72.0 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdeflate-dev arm64 1.12-1 [58.1 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libhtscodecs2 arm64 1.2.2-1 [60.5 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libhts3 arm64 1.13+ds-2build2 [376 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblzma-dev arm64 5.2.5-2.1 [158 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic-proposed/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2ubuntu10 [161 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/universe arm64 libhts-dev arm64 1.13+ds-2build2 [5511 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 52.1 MB in 4s (13.9 MB/s) Selecting previously unselected package libelf1:arm64. 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Setting up libelf1:arm64 (0.187-1) ... Setting up libicu-dev:arm64 (71.1-3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1) ... Setting up libboost-filesystem-dev:arm64 (1.74.0.3ubuntu7) ... Setting up chrpath (0.16-2) ... Setting up libbz2-dev:arm64 (1.0.8-5build1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:arm64 (0.187-1) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up libboost-system-dev:arm64 (1.74.0.3ubuntu7) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libldap-2.5-0:arm64 (2.5.12+dfsg-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up libboost-serialization1.74-dev:arm64 (1.74.0-16.1ubuntu1) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up libboost-regex1.74-dev:arm64 (1.74.0-16.1ubuntu1) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:arm64 (7.84.0-2ubuntu1) ... Setting up libcurl4-gnutls-dev:arm64 (7.84.0-2ubuntu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libboost-iostreams1.74-dev:arm64 (1.74.0-16.1ubuntu1) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.74-dev:arm64 (1.74.0-16.1ubuntu1) ... Setting up libboost-date-time-dev:arm64 (1.74.0.3ubuntu7) ... Setting up libhts3:arm64 (1.13+ds-2build2) ... Setting up libhts-dev:arm64 (1.13+ds-2build2) ... Setting up debhelper (13.8ubuntu1) ... Setting up libboost-iostreams-dev:arm64 (1.74.0.3ubuntu7) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-124-generic #140-Ubuntu SMP Thu Aug 4 02:27:01 UTC 2022 arm64 (aarch64) Toolchain package versions: binutils_2.38.90.20220713-2ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-11_11.3.0-5ubuntu1 g++-12_12.1.0-8ubuntu1 gcc-11_11.3.0-5ubuntu1 gcc-12_12.1.0-8ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-5ubuntu1 libstdc++-12-dev_12.1.0-8ubuntu1 libstdc++6_12.1.0-8ubuntu1 linux-libc-dev_5.19.0-15.15 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: delly Binary: delly Architecture: any Version: 1.1.3-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/dellytools/delly Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/delly Vcs-Git: https://salsa.debian.org/med-team/delly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper Package-List: delly deb science optional arch=any Checksums-Sha1: 3a2f99dfb09da14c8290cafdd8ebf2178e83c147 3728308 delly_1.1.3.orig.tar.xz faef796c44b49f0e5d07cc0014d2b2b4a2cf0b16 5176 delly_1.1.3-1.debian.tar.xz Checksums-Sha256: fdf8c717ebb4b8eeae64f6958e77d3c02bcee4ea7f6cdc3d77a86b12a961b0e6 3728308 delly_1.1.3.orig.tar.xz 4f9d76e23c51f23c4b28469f199f78b5956ba91786fc54035256ca8336cdfd71 5176 delly_1.1.3-1.debian.tar.xz Files: aa00cfca6109463f6ec55eba061c7a77 3728308 delly_1.1.3.orig.tar.xz 8d6b849e860b9cf31d30aa9504d21105 5176 delly_1.1.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmL0//URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEQ+BAAiZbe8j6MUDqMPa+vrjdAs6F1Vzq0q4Ff vfSuLFxBNOW4BIZGe7z/G8SKvojaTyJ5KZCO1uHd3YdG5G5Zd0NnYFWFtzPCTasB LlKTDD+R0XBkukTLZolR7rLDslV+43P8kYXe8pw671LCPZKvOB/KPdPxEqesMY3j EMJi039d/ycoSR72LbrHEhrSdTIy+kSAfRqxrSEgGuiLCkwbWoUSqBIE2hFDanae VmfECyHgaLx6LCan0hedSQgwNk+iotZmPXJzp/BDfO3PmtI7ucOcrA9Jpby2xBwX Zd+H4RV8Xpx97D0abeAaVmxalsYoVkKqufu/G5kTsRsHSo6dTfnbN40GGmjtUVvm Y9sAkFqUOT2hrQ+QxDs2OHm1j5CywdbysNRLpX9/vWTuPr3SZGCvbxveGPQtHqUg 1cZob+N4ivHw4vXy/GripAxOdclFL4Hq9RtHVRB+vqHaOf1pan4D0I4nU76gOZ8C oU/gxwb/w7IXcJPrxwCWmvUlrs49EAsIxM00ZgvagJHvkJyfCUnmGckvlJlR9jDL nNruZ1eL0wNwvPN21oPaED5QAxyyCUuEaKVGUL5H2WvHLbg86qZ5BYORfJrCDknY bnP0mXq2O7c0iE6vEiIitzeMQPpCIxrrrlkomYv+EXaXTXxSMQOhG9hJrbFvbTEJ aDANZriQm2E= =vEAa -----END PGP SIGNATURE----- gpgv: Signature made Thu Aug 11 13:11:17 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./delly_1.1.3-1.dsc dpkg-source: info: extracting delly in /<> dpkg-source: info: unpacking delly_1.1.3.orig.tar.xz dpkg-source: info: unpacking delly_1.1.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24269235 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24269235 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24269235 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j4 distclean make[2]: Entering directory '/<>' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/<>' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j4 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/<>' g++ -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from src/util.h:13, from src/delly.h:32, from src/delly.cpp:17: src/tags.h:67:32: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 67 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from src/delly.cpp:3: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:59:33: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 59 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:20: src/merge.h:65:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 65 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:22: src/scan.h:33:39: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/scan.h: In instantiation of ‘void torali::scan(const TConfig&, const LibraryInfo&, std::vector >&) [with TConfig = CountDNAConfig]’: src/coral.h:716:11: required from here src/scan.h:98:30: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 98 | if ((it->lower() >= 0) && (it->upper() < hdr->target_len[refIndex])) { | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/12/bits/c++allocator.h:33, from /usr/include/c++/12/bits/allocator.h:46, from /usr/include/c++/12/string:41: In member function ‘std::__new_allocator::construct(char*)void’, inlined from ‘boost::allocator_construct, char>(std::allocator&, char*)std::enable_if, char>::value, void>::type’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘boost::alloc_construct_n, char>(std::allocator&, char*, unsigned long)void’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘boost::multi_array >::allocate_space()’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘boost::multi_array >::multi_array(std::allocator const&) [clone .constprop.0]’ at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/12/bits/new_allocator.h:175:11: warning: ‘memset’ offset 0 is out of the bounds [0, 0] [-Warray-bounds] 175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::__new_allocator::construct(bool*)void’, inlined from ‘boost::allocator_construct, bool>(std::allocator&, bool*)std::enable_if, bool>::value, void>::type’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘boost::alloc_construct_n, bool>(std::allocator&, bool*, unsigned long)void’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘boost::multi_array >::allocate_space()’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘boost::multi_array >::multi_array(std::allocator const&)’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘torali::consensus > >(torali::TeguaConfig const&, boost::multi_array > const&, std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&)void’ at src/msa.h:166:11: /usr/include/c++/12/bits/new_allocator.h:175:11: warning: ‘memset’ offset 0 is out of the bounds [0, 0] [-Warray-bounds] 175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::__new_allocator::construct(bool*)void’, inlined from ‘boost::allocator_construct, bool>(std::allocator&, bool*)std::enable_if, bool>::value, void>::type’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘boost::alloc_construct_n, bool>(std::allocator&, bool*, unsigned long)void’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘boost::multi_array >::allocate_space()’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘boost::multi_array >::multi_array(std::allocator const&)’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘torali::consensus > >(torali::Config const&, boost::multi_array > const&, std::__cxx11::basic_string, std::allocator >&, std::__cxx11::basic_string, std::allocator >&)void’ at src/msa.h:166:11: /usr/include/c++/12/bits/new_allocator.h:175:11: warning: ‘memset’ offset 0 is out of the bounds [0, 0] [-Warray-bounds] 175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function ‘std::vector >::resize(unsigned long, torali::ReadCount const&)’, inlined from ‘torali::annotateCoverage >, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > > >(torali::Config&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&)void’ at src/coverage.h:265:30: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70: /usr/include/c++/12/bits/vector.tcc: In function ‘torali::annotateCoverage >, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > > >(torali::Config&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&)void’: /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned long, torali::ReadCount const&)’ declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: ‘’ declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function ‘std::vector >::resize(unsigned long, torali::ReadCount const&)’, inlined from ‘torali::runTegua(torali::TeguaConfig&)int’ at src/tegua.h:178:26: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In function ‘torali::runTegua(torali::TeguaConfig&)int’: /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned long, torali::ReadCount const&)’ declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/tegua.h:178:39: note: ‘’ declared here 178 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function ‘std::vector >::resize(unsigned long, torali::ReadCount const&)’, inlined from ‘torali::runAsm(torali::AsmConfig&)int’ at src/asmode.h:338:26: /usr/include/c++/12/bits/stl_vector.h:1032:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In function ‘torali::runAsm(torali::AsmConfig&)int’: /usr/include/c++/12/bits/vector.tcc:523:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned long, torali::ReadCount const&)’ declared here 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:23: src/asmode.h:338:39: note: ‘’ declared here 338 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function ‘construct’, inlined from ‘allocator_construct’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘alloc_construct_n’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘__ct_base .constprop’ at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/12/bits/new_allocator.h:175:11: warning: ‘__builtin_memset’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ In member function ‘allocate’, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:545:33, inlined from ‘__ct_base .constprop’ at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/12/bits/new_allocator.h:137:55: note: destination object of size 0 allocated by ‘operator new’ 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In member function ‘construct’, inlined from ‘allocator_construct’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘alloc_construct_n’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘__ct ’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘_generateProbes’ at src/genotype.h:219:11, inlined from ‘genotypeLR’ at src/genotype.h:421:20, inlined from ‘runTegua’ at src/tegua.h:182:14: /usr/include/c++/12/bits/new_allocator.h:175:11: warning: ‘__builtin_memset’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ In member function ‘allocate’, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:545:33, inlined from ‘__ct ’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘_generateProbes’ at src/genotype.h:219:11, inlined from ‘genotypeLR’ at src/genotype.h:421:20, inlined from ‘runTegua’ at src/tegua.h:182:14: /usr/include/c++/12/bits/new_allocator.h:137:55: note: destination object of size 0 allocated by ‘operator new’ 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ In member function ‘construct’, inlined from ‘allocator_construct’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘alloc_construct_n’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘__ct ’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘_generateProbes’ at src/genotype.h:219:11, inlined from ‘genotypeLR’ at src/genotype.h:421:20: /usr/include/c++/12/bits/new_allocator.h:175:11: warning: ‘__builtin_memset’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 175 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ In member function ‘allocate’, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:545:33, inlined from ‘__ct ’ at /usr/include/boost/multi_array.hpp:156:19, inlined from ‘_generateProbes’ at src/genotype.h:219:11, inlined from ‘genotypeLR’ at src/genotype.h:421:20: /usr/include/c++/12/bits/new_allocator.h:137:55: note: destination object of size 0 allocated by ‘operator new’ 137 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ make[2]: Leaving directory '/<>' chrpath -d src/delly make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' # avoiding redundant compile of delly make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a a2482dd8d5c527f2e1d4c820c0310487c11ff06b dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing delly (in debian/delly); do_strip: , oemstrip: pkgstriptranslations: processing delly-dbgsym (in debian/.debhelper/delly/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/delly/DEBIAN/control, package delly, directory debian/delly pkgstripfiles: Truncating usr/share/doc/delly/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package delly ... pkgstripfiles: No PNG files. dpkg-deb: building package 'delly' in '../delly_1.1.3-1_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/delly/dbgsym-root/DEBIAN/control, package delly-dbgsym, directory debian/.debhelper/delly/dbgsym-root dpkg-deb: building package 'delly-dbgsym' in 'debian/.debhelper/scratch-space/build-delly/delly-dbgsym_1.1.3-1_arm64.deb'. Renaming delly-dbgsym_1.1.3-1_arm64.deb to delly-dbgsym_1.1.3-1_arm64.ddeb dpkg-genbuildinfo --build=any -O../delly_1.1.3-1_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../delly_1.1.3-1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-08-11T17:40:03Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ delly_1.1.3-1_arm64.changes: ---------------------------- Format: 1.8 Date: Thu, 11 Aug 2022 16:03:37 +0530 Source: delly Binary: delly Built-For-Profiles: noudeb Architecture: arm64 Version: 1.1.3-1 Distribution: kinetic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Mohammed Bilal Description: delly - Structural variant discovery by read analysis Changes: delly (1.1.3-1) unstable; urgency=medium . * Team upload. * New upstream version 1.1.3 * routine-update: Standards-Version: 4.6.1 * Add autopkgtests * d/rules : remove src/dpe from build target * Fix blhc * Add patch to use shared htslib and fix reprotest Checksums-Sha1: 817b5f53d27d76543239f2f35559a2041dc89d33 4493612 delly-dbgsym_1.1.3-1_arm64.ddeb deb6d6a12ecd850368174a2d65bbdf1813fb3e2f 7856 delly_1.1.3-1_arm64.buildinfo 46a797d66d9e8c3b58f56288fee7947aca49a970 329984 delly_1.1.3-1_arm64.deb Checksums-Sha256: ccaea7e063cb4bcf459dfaeb3ab1d26f7f15d9f8edf6cd7ede0e1eaf334ca18d 4493612 delly-dbgsym_1.1.3-1_arm64.ddeb 1665b8fbda7a725ec73dc94975c63be2828e7e6bae6c9903326dbd84d8249a26 7856 delly_1.1.3-1_arm64.buildinfo 9cee473bd8db057cd5f22d309bc2b8a0d6ab0d76e10f784979a39563df455d10 329984 delly_1.1.3-1_arm64.deb Files: fba0343b6f2e34b1a2ec311bbbf450d5 4493612 debug optional delly-dbgsym_1.1.3-1_arm64.ddeb 0f18e966862707160564276a13d070fe 7856 science optional delly_1.1.3-1_arm64.buildinfo ce76f9347c46779b95bbffb696a9bc18 329984 science optional delly_1.1.3-1_arm64.deb /<>/delly_1.1.3-1_arm64.changes.new could not be renamed to /<>/delly_1.1.3-1_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: delly Binary: delly delly-dbgsym Architecture: arm64 Version: 1.1.3-1 Checksums-Md5: fba0343b6f2e34b1a2ec311bbbf450d5 4493612 delly-dbgsym_1.1.3-1_arm64.ddeb ce76f9347c46779b95bbffb696a9bc18 329984 delly_1.1.3-1_arm64.deb Checksums-Sha1: 817b5f53d27d76543239f2f35559a2041dc89d33 4493612 delly-dbgsym_1.1.3-1_arm64.ddeb 46a797d66d9e8c3b58f56288fee7947aca49a970 329984 delly_1.1.3-1_arm64.deb Checksums-Sha256: ccaea7e063cb4bcf459dfaeb3ab1d26f7f15d9f8edf6cd7ede0e1eaf334ca18d 4493612 delly-dbgsym_1.1.3-1_arm64.ddeb 9cee473bd8db057cd5f22d309bc2b8a0d6ab0d76e10f784979a39563df455d10 329984 delly_1.1.3-1_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Thu, 11 Aug 2022 17:40:02 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.90.20220713-2ubuntu1), binutils-aarch64-linux-gnu (= 2.38.90.20220713-2ubuntu1), binutils-common (= 2.38.90.20220713-2ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), chrpath (= 0.16-2), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.1.0-3ubuntu1), cpp-11 (= 11.3.0-5ubuntu1), cpp-12 (= 12.1.0-8ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.8ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:12.1.0-3ubuntu1), g++-12 (= 12.1.0-8ubuntu1), gcc (= 4:12.1.0-3ubuntu1), gcc-11 (= 11.3.0-5ubuntu1), gcc-11-base (= 11.3.0-5ubuntu1), gcc-12 (= 12.1.0-8ubuntu1), gcc-12-base (= 12.1.0-8ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-5ubuntu1), libasan8 (= 12.1.0-8ubuntu1), libatomic1 (= 12.1.0-8ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 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1.74.0-16.1ubuntu1), libboost-system1.74.0 (= 1.74.0-16.1ubuntu1), libboost1.74-dev (= 1.74.0-16.1ubuntu1), libbrotli1 (= 1.0.9-2build6), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-8ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libctf-nobfd0 (= 2.38.90.20220713-2ubuntu1), libctf0 (= 2.38.90.20220713-2ubuntu1), libcurl3-gnutls (= 7.84.0-2ubuntu1), libcurl4-gnutls-dev (= 7.84.0-2ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.8ubuntu1), libdeflate-dev (= 1.12-1), libdeflate0 (= 1.12-1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5ubuntu1), libgcc-12-dev (= 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1.3.2-2.1), libtirpc3 (= 1.3.2-2.1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5ubuntu1), libtsan2 (= 12.1.0-8ubuntu1), libubsan1 (= 12.1.0-8ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.2-2ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-15.15), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 32), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu10), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu10) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1660214017" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ delly_1.1.3-1_arm64.deb ----------------------- new Debian package, version 2.0. size 329984 bytes: control archive=868 bytes. 1020 bytes, 17 lines control 312 bytes, 5 lines md5sums Package: delly Version: 1.1.3-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 851 Depends: libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libboost-program-options1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libhts3 (>= 1.10), libstdc++6 (>= 11) Section: science Priority: optional Homepage: https://github.com/dellytools/delly Description: Structural variant discovery by read analysis Delly performs Structural variant discovery by integrated paired-end and split-read analysis. It discovers, genotypes and visualizes deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. drwxr-xr-x root/root 0 2022-08-11 10:33 ./ drwxr-xr-x root/root 0 2022-08-11 10:33 ./usr/ drwxr-xr-x root/root 0 2022-08-11 10:33 ./usr/bin/ -rwxr-xr-x root/root 854144 2022-08-11 10:33 ./usr/bin/delly drwxr-xr-x root/root 0 2022-08-11 10:33 ./usr/share/ drwxr-xr-x root/root 0 2022-08-11 10:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-08-11 10:33 ./usr/share/doc/delly/ -rw-r--r-- root/root 1184 2022-08-11 10:33 ./usr/share/doc/delly/changelog.Debian.gz -rw-r--r-- root/root 2645 2022-08-11 10:33 ./usr/share/doc/delly/copyright drwxr-xr-x root/root 0 2022-08-11 10:33 ./usr/share/man/ drwxr-xr-x root/root 0 2022-08-11 10:33 ./usr/share/man/man1/ -rw-r--r-- root/root 291 2022-08-11 10:33 ./usr/share/man/man1/delly.1.gz -rw-r--r-- root/root 336 2022-08-11 10:33 ./usr/share/man/man1/dpe.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 30776 Build-Time: 332 Distribution: kinetic-proposed Host Architecture: arm64 Install-Time: 32 Job: delly_1.1.3-1.dsc Machine Architecture: arm64 Package: delly Package-Time: 366 Source-Version: 1.1.3-1 Space: 30776 Status: successful Version: 1.1.3-1 -------------------------------------------------------------------------------- Finished at 2022-08-11T17:40:03Z Build needed 00:06:06, 30776k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24269235 Scanning for processes to kill in build PACKAGEBUILD-24269235