https://launchpad.net/ubuntu/+source/delly/1.1.8-1/+build/26914574 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-023 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:18 UTC 2023 ppc64le Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 26 Oct 17:13:36 ntpdate[1970]: adjust time server 10.211.37.1 offset -0.004671 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-26914574 --image-type chroot /home/buildd/filecache-default/d42c54d6e204d222772cc047f01d282d9c30a0e5 Creating target for build PACKAGEBUILD-26914574 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-26914574 Starting target for build PACKAGEBUILD-26914574 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-26914574 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26914574 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-26914574 Updating target for build PACKAGEBUILD-26914574 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1349 kB] Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [14.4 MB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [71.5 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [30.4 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [168 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [76.1 kB] Fetched 16.6 MB in 37s (447 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash-completion cpp-13 g++-13 gcc-13 gcc-13-base libasan8 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libgcc-13-dev libgcc-s1 libgomp1 libitm1 liblsan0 libquadmath0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtsan2 libubsan1 libudev1 libxxhash0 libzstd1 openssl systemd systemd-dev systemd-sysv 32 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After this operation, 6144 B disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc6-dev ppc64el 2.38-3ubuntu1 [2083 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc-dev-bin ppc64el 2.38-3ubuntu1 [21.0 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libubsan1 ppc64el 13.2.0-6ubuntu1 [1134 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-6ubuntu1 [44.3 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-s1 ppc64el 13.2.0-6ubuntu1 [38.5 kB] Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgomp1 ppc64el 13.2.0-6ubuntu1 [155 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libitm1 ppc64el 13.2.0-6ubuntu1 [32.6 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libatomic1 ppc64el 13.2.0-6ubuntu1 [10.6 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libasan8 ppc64el 13.2.0-6ubuntu1 [2837 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblsan0 ppc64el 13.2.0-6ubuntu1 [1233 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libquadmath0 ppc64el 13.2.0-6ubuntu1 [156 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cpp-13 ppc64el 13.2.0-6ubuntu1 [9736 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcc1-0 ppc64el 13.2.0-6ubuntu1 [48.7 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++-13-dev ppc64el 13.2.0-6ubuntu1 [2475 kB] Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el g++-13 ppc64el 13.2.0-6ubuntu1 [11.2 MB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13 ppc64el 13.2.0-6ubuntu1 [19.5 MB] Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-13-dev ppc64el 13.2.0-6ubuntu1 [1578 kB] Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtsan2 ppc64el 13.2.0-6ubuntu1 [2657 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++6 ppc64el 13.2.0-6ubuntu1 [872 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libzstd1 ppc64el 1.5.5+dfsg2-2 [390 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc6 ppc64el 2.38-3ubuntu1 [3245 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libc-bin ppc64el 2.38-3ubuntu1 [745 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 253.5-1ubuntu7 [11.5 kB] Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3 ppc64el 3.0.10-1ubuntu2.1 [2149 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 253.5-1ubuntu7 [3271 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 253.5-1ubuntu7 [2086 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 253.5-1ubuntu7 [490 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 253.5-1ubuntu7 [183 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxxhash0 ppc64el 0.8.2-2 [30.4 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.10-1ubuntu2.1 [1208 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bash-completion all 1:2.11-8 [180 kB] Preconfiguring packages ... Fetched 69.9 MB in 3min 41s (316 kB/s) (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.38-3ubuntu1_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../libc-dev-bin_2.38-3ubuntu1_ppc64el.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../libubsan1_13.2.0-6ubuntu1_ppc64el.deb ... Unpacking libubsan1:ppc64el (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../gcc-13-base_13.2.0-6ubuntu1_ppc64el.deb ... Unpacking gcc-13-base:ppc64el (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Setting up gcc-13-base:ppc64el (13.2.0-6ubuntu1) ... (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../libgcc-s1_13.2.0-6ubuntu1_ppc64el.deb ... Unpacking libgcc-s1:ppc64el (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:ppc64el (13.2.0-6ubuntu1) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26914574 ppc64el noble-proposed -c chroot:build-PACKAGEBUILD-26914574 --arch=ppc64el --dist=noble-proposed --nolog delly_1.1.8-1.dsc Initiating build PACKAGEBUILD-26914574 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:18 UTC 2023 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-023.buildd +==============================================================================+ | delly 1.1.8-1 (ppc64el) Thu, 26 Oct 2023 17:18:06 +0000 | +==============================================================================+ Package: delly Version: 1.1.8-1 Source Version: 1.1.8-1 Distribution: noble-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26914574/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/delly-FCcTeU/resolver-5QClKL' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- delly_1.1.8-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/delly-FCcTeU/delly-1.1.8' with '<>' I: NOTICE: Log filtering will replace 'build/delly-FCcTeU' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [438 B] Get:5 copy:/<>/apt_archive ./ Packages [521 B] Fetched 1916 B in 0s (161 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu72 libldap2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config icu-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev chrpath debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-date-time-dev libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-program-options-dev libboost-program-options1.74-dev libboost-program-options1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system-dev libboost-system1.74-dev libboost-system1.74.0 libboost1.74-dev libbrotli1 libbz2-dev libcurl3-gnutls libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu72 libldap2 liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 56.5 MB of archives. After this operation, 334 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [738 B] Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libelf1 ppc64el 0.189-4 [66.3 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu72 ppc64el 72.1-3ubuntu3 [11.2 MB] Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3 [822 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic-mgc ppc64el 1:5.44-3 [293 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libmagic1 ppc64el 1:5.44-3 [104 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el file ppc64el 1:5.44-3 [22.4 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext-base ppc64el 0.21-13 [42.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el groff-base ppc64el 1.23.0-2 [1105 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libnghttp2-14 ppc64el 1.55.1-1 [87.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libpsl5 ppc64el 0.21.2-1 [60.6 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el man-db ppc64el 2.11.2-3 [1260 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el m4 ppc64el 1.4.19-3 [275 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el autoconf all 2.71-3 [339 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el autopoint all 0.21-13 [422 kB] Get:20 http://ftpmaster.internal/ubuntu noble/universe ppc64el chrpath ppc64el 0.16-2 [13.3 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebhelper-perl all 13.11.7ubuntu1 [85.8 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libtool all 2.4.7-7 [166 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libdw1 ppc64el 0.189-4 [292 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el dwz ppc64el 0.15-1 [139 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext ppc64el 0.21-13 [970 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el debhelper all 13.11.7ubuntu1 [940 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 72.1-3ubuntu3 [243 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [9584 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-date-time1.74.0 ppc64el 1.74.0+ds1-23ubuntu1 [222 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-serialization1.74.0 ppc64el 1.74.0+ds1-23ubuntu1 [331 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-serialization1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [385 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-date-time1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [226 kB] Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-date-time-dev ppc64el 1.74.0.3ubuntu7 [3248 B] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-filesystem1.74.0 ppc64el 1.74.0+ds1-23ubuntu1 [270 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-system1.74.0 ppc64el 1.74.0+ds1-23ubuntu1 [223 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-system1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [218 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-filesystem1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [292 kB] Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-filesystem-dev ppc64el 1.74.0.3ubuntu7 [3282 B] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.74.0 ppc64el 1.74.0+ds1-23ubuntu1 [529 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 72.1-3ubuntu3 [12.4 MB] Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [606 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-iostreams1.74.0 ppc64el 1.74.0+ds1-23ubuntu1 [245 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-iostreams1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [250 kB] Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-iostreams-dev ppc64el 1.74.0.3ubuntu7 [3238 B] Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-program-options1.74.0 ppc64el 1.74.0+ds1-23ubuntu1 [313 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-program-options1.74-dev ppc64el 1.74.0+ds1-23ubuntu1 [382 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-program-options-dev ppc64el 1.74.0.3ubuntu7 [3266 B] Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-system-dev ppc64el 1.74.0.3ubuntu7 [3390 B] Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libbrotli1 ppc64el 1.0.9-2build8 [370 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5build1 [49.3 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-3 [22.9 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-3 [65.5 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libldap2 ppc64el 2.6.6+dfsg-1~exp1ubuntu1 [228 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build4 [65.5 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libssh-4 ppc64el 0.10.5-3ubuntu1 [238 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl3-gnutls ppc64el 8.2.1-1ubuntu3.1 [395 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4-gnutls-dev ppc64el 8.2.1-1ubuntu3.1 [502 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.18-1 [58.4 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate-dev ppc64el 1.18-1 [65.8 kB] Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.5.1-1 [108 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.17+ds-1 [543 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.1-0.2 [202 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.2.13.dfsg-1ubuntu5 [901 kB] Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts-dev ppc64el 1.17+ds-1 [6146 kB] Preconfiguring packages ... Fetched 56.5 MB in 3min 2s (310 kB/s) Selecting previously unselected package libelf1:ppc64el. (Reading database ... 13550 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.189-4_ppc64el.deb ... Unpacking libelf1:ppc64el (0.189-4) ... Selecting previously unselected package libicu72:ppc64el. Preparing to unpack .../01-libicu72_72.1-3ubuntu3_ppc64el.deb ... Unpacking libicu72:ppc64el (72.1-3ubuntu3) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../04-libmagic1_1%3a5.44-3_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.44-3) ... Selecting previously unselected package file. 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Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:ppc64el (1.5.1-1) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libboost-system1.74.0:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libpsl5:ppc64el (0.21.2-1) ... Setting up libboost1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libicu72:ppc64el (72.1-3ubuntu3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-iostreams1.74.0:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libboost-program-options1.74.0:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libdebhelper-perl (13.11.7ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.9-2build8) ... Setting up libnghttp2-14:ppc64el (1.55.1-1) ... Setting up libmagic1:ppc64el (1:5.44-3) ... Setting up libdeflate0:ppc64el (1.18-1) ... Setting up gettext-base (0.21-13) ... Setting up m4 (1.4.19-3) ... Setting up libboost-filesystem1.74.0:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up file (1:5.44-3) ... Setting up libboost-program-options1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libboost-program-options-dev:ppc64el (1.74.0.3ubuntu7) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libboost-system1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libboost-regex1.74.0:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up autopoint (0.21-13) ... Setting up icu-devtools (72.1-3ubuntu3) ... Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-3) ... Setting up libssh-4:ppc64el (0.10.5-3ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:ppc64el (5.4.1-0.2) ... Setting up libboost-serialization1.74.0:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up zlib1g-dev:ppc64el (1:1.2.13.dfsg-1ubuntu5) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libboost-filesystem1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libboost-date-time1.74.0:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libdeflate-dev:ppc64el (1.18-1) ... Setting up libelf1:ppc64el (0.189-4) ... Setting up libicu-dev:ppc64el (72.1-3ubuntu3) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.3) ... Setting up libldap2:ppc64el (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up libboost-filesystem-dev:ppc64el (1.74.0.3ubuntu7) ... Setting up chrpath (0.16-2) ... Setting up libbz2-dev:ppc64el (1.0.8-5build1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:ppc64el (0.189-4) ... Setting up gettext (0.21-13) ... Setting up libtool (2.4.7-7) ... Setting up libboost-system-dev:ppc64el (1.74.0.3ubuntu7) ... Setting up libcurl3-gnutls:ppc64el (8.2.1-1ubuntu3.1) ... Setting up libcurl4-gnutls-dev:ppc64el (8.2.1-1ubuntu3.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-serialization1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libboost-regex1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up groff-base (1.23.0-2) ... Setting up debugedit (1:5.0-5) ... Setting up libhts3:ppc64el (1.17+ds-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:ppc64el (1.17+ds-1) ... Setting up man-db (2.11.2-3) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libboost-iostreams1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libboost-date-time1.74-dev:ppc64el (1.74.0+ds1-23ubuntu1) ... Setting up libboost-date-time-dev:ppc64el (1.74.0.3ubuntu7) ... Setting up debhelper (13.11.7ubuntu1) ... Setting up libboost-iostreams-dev:ppc64el (1.74.0.3ubuntu7) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:18 UTC 2023 ppc64el (ppc64le) Toolchain package versions: binutils_2.41-5ubuntu1 dpkg-dev_1.22.0ubuntu1 g++-13_13.2.0-6ubuntu1 gcc-13_13.2.0-6ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-6ubuntu1 libstdc++6_13.2.0-6ubuntu1 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.3 apt-utils_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13ubuntu3 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41-5ubuntu1 binutils-common_2.41-5ubuntu1 binutils-powerpc64le-linux-gnu_2.41-5ubuntu1 bsdextrautils_2.39.1-4ubuntu2 bsdutils_1:2.39.1-4ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 chrpath_0.16-2 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-13_13.2.0-6ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.7ubuntu1 debianutils_5.8-1 debugedit_1:5.0-5 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.22.0ubuntu1 dpkg-dev_1.22.0ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 file_1:5.44-3 findutils_4.9.0-5 g++_4:13.2.0-1ubuntu1 g++-13_13.2.0-6ubuntu1 gcc_4:13.2.0-1ubuntu1 gcc-13_13.2.0-6ubuntu1 gcc-13-base_13.2.0-6ubuntu1 gettext_0.21-13 gettext-base_0.21-13 gpg_2.2.40-1.1ubuntu1 gpg-agent_2.2.40-1.1ubuntu1 gpgconf_2.2.40-1.1ubuntu1 gpgv_2.2.40-1.1ubuntu1 grep_3.11-2 groff-base_1.23.0-2 gzip_1.12-1ubuntu1 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libboost-program-options1.74.0_1.74.0+ds1-23ubuntu1 libboost-regex1.74-dev_1.74.0+ds1-23ubuntu1 libboost-regex1.74.0_1.74.0+ds1-23ubuntu1 libboost-serialization1.74-dev_1.74.0+ds1-23ubuntu1 libboost-serialization1.74.0_1.74.0+ds1-23ubuntu1 libboost-system-dev_1.74.0.3ubuntu7 libboost-system1.74-dev_1.74.0+ds1-23ubuntu1 libboost-system1.74.0_1.74.0+ds1-23ubuntu1 libboost1.74-dev_1.74.0+ds1-23ubuntu1 libbrotli1_1.0.9-2build8 libbz2-1.0_1.0.8-5build1 libbz2-dev_1.0.8-5build1 libc-bin_2.38-3ubuntu1 libc-dev-bin_2.38-3ubuntu1 libc6_2.38-3ubuntu1 libc6-dev_2.38-3ubuntu1 libcap-ng0_0.8.3-1build2 libcap2_1:2.66-4ubuntu1 libcc1-0_13.2.0-6ubuntu1 libcom-err2_1.47.0-2ubuntu1 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-4ubuntu3 libctf-nobfd0_2.41-5ubuntu1 libctf0_2.41-5ubuntu1 libcurl3-gnutls_8.2.1-1ubuntu3.1 libcurl4-gnutls-dev_8.2.1-1ubuntu3.1 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270ubuntu1 libdebhelper-perl_13.11.7ubuntu1 libdeflate-dev_1.18-1 libdeflate0_1.18-1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdpkg-perl_1.22.0ubuntu1 libdw1_0.189-4 libelf1_0.189-4 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.1-1 libfdisk1_2.39.1-4ubuntu2 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-6ubuntu1 libgcc-s1_13.2.0-6ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu1 libgomp1_13.2.0-6ubuntu1 libgpg-error-l10n_1.47-2 libgpg-error0_1.47-2 libgpm2_1.20.7-10build1 libgssapi-krb5-2_1.20.1-3ubuntu1 libhogweed6_3.9.1-2 libhts-dev_1.17+ds-1 libhts3_1.17+ds-1 libhtscodecs2_1.5.1-1 libicu-dev_72.1-3ubuntu3 libicu72_72.1-3ubuntu3 libidn2-0_2.3.4-1 libip4tc2_1.8.9-2ubuntu2 libisl23_0.26-3 libitm1_13.2.0-6ubuntu1 libjansson4_2.14-2 libjson-c5_0.17-1 libk5crypto3_1.20.1-3ubuntu1 libkeyutils1_1.6.3-2 libkmod2_30+20230519-1ubuntu3 libkrb5-3_1.20.1-3ubuntu1 libkrb5support0_1.20.1-3ubuntu1 libldap2_2.6.6+dfsg-1~exp1ubuntu1 liblocale-gettext-perl_1.07-6 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------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: delly Binary: delly Architecture: any Version: 1.1.8-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/dellytools/delly Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/delly Vcs-Git: https://salsa.debian.org/med-team/delly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper Package-List: delly deb science optional arch=any Checksums-Sha1: cf08c2c461916e0c2ed3e0e156a133ed141ac4db 3743720 delly_1.1.8.orig.tar.xz 85b866350db703acd3f9193450034d51a1fb790d 5244 delly_1.1.8-1.debian.tar.xz Checksums-Sha256: 011e6a2a1e2bfcddd3e909ab38974b4220b69f308ef6049420e12112fe967bd3 3743720 delly_1.1.8.orig.tar.xz b3feab4ff9e3654487aafb8836a29703a40ac172d1bf2b343464a3738139e48f 5244 delly_1.1.8-1.debian.tar.xz Files: d803b6a94d7f64c179b7feda0f25679c 3743720 delly_1.1.8.orig.tar.xz d4a36fee1946cb9cca003d1109ccbf5c 5244 delly_1.1.8-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJDBAEBCgAtFiEELWW8HrlmWm6X+XMKs/WUUoUhnh8FAmUoCJkPHHJtYkBkZWJp YW4ub3JnAAoJELP1lFKFIZ4fL4kP/0AvXn4QPD0jbfn8GtfGqCPaQ2SxUcZe0JCM DNuzWfZ+kfadXNSpr+BMwZijLmNpgPsY+RpXrt5etweGmaoii/TBlfBgVQc6Uq2t uOj0lDriTLu3Jnm6iCzWNhFpj6DWvBn6ZYiIiUOANrBAZtNqQLsWjrxVvmLhFMFp sYk+Xj9T5OX/RcuQXfbXhjgT8HPGl21CwVzl84sX850HAizYKDqwKd669m2pLduf OHf+0w2JmyvkzmeZM0i75MOVSm9hUeO7nvzY6dmxsAosv/d8FDbzOi+ZI2YQqG5e 5By1kFWRLbSmSLUJ5oDbxFHfOxdfeePVOZRU/aqV+aN6X6MMajnkoK/W2n/NPzRi FeYAofznwdSMwtDpmTVQPLzs9u4bsO9xHKvmR1DIfIqtogBeA1XGhJJe+Rb8hS6x zu72dPgP0F//NDrO4SIlrBUg3Z5pMG1ANrZ+oHCHnMVLGV+iy6cewkbYcgcq9E1k uaXz+3GPqZIn9dbdURtXwSQBzm+ONDLZWpMbljZ5aILkOWMjqilVJtZ/s/29n5jW 2aswV7n0HXmmX2Z/w4tZ/HDffJFtr3DnwDGn4QEtrBpGPdn98bmB8qmVLJGWK/3/ MuTbw3rsOrtx7+zV6nHB7BEQ0G0YYl5wwEH2nYLCee8Wg3bFB5CLrPenNwSvGwjr IGXh7ei3 =h6bi -----END PGP SIGNATURE----- gpgv: Signature made Thu Oct 12 14:54:17 2023 UTC gpgv: using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "rmb@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./delly_1.1.8-1.dsc: no acceptable signature found dpkg-source: info: extracting delly in /<> dpkg-source: info: unpacking delly_1.1.8.orig.tar.xz dpkg-source: info: unpacking delly_1.1.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26914574 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26914574 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26914574 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j4 distclean make[2]: Entering directory '/<>' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/<>' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j4 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/<>' g++ -g -O3 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/delly-1.1.8-1 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from src/util.h:15, from src/delly.h:32, from src/delly.cpp:18: src/tags.h:76:32: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from src/delly.cpp:3: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:61:33: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 61 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:68:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 68 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:33, from src/delly.cpp:26: src/gfa.h:43:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 43 | struct SortLinks : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:34: src/gaf.h:41:40: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 41 | struct SortAlignRecord : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:27: src/markdup.h:62:37: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 62 | struct SortSVEvents : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:28: src/compvcf.h:65:41: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 65 | struct SortCompSVRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/powerpc64le-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43: In member function ‘std::__new_allocator::construct(char*)void’, inlined from ‘boost::allocator_construct, char>(std::allocator&, char*)std::enable_if, char>::value, void>::type’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘boost::alloc_construct_n, char>(std::allocator&, char*, unsigned long)void’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘boost::multi_array >::allocate_space()’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘boost::multi_array >::multi_array(std::allocator const&) [clone .constprop.0]’ at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: ‘memset’ offset 0 is out of the bounds [0, 0] [-Warray-bounds=] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function ‘std::vector >::resize(unsigned long, torali::ReadCount const&)’, inlined from ‘torali::runAsm(torali::AsmConfig&)int’ at src/asmode.h:399:26: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In function ‘torali::runAsm(torali::AsmConfig&)int’: /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned long, torali::ReadCount const&)’ declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:399:39: note: ‘’ declared here 399 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function ‘std::vector >::resize(unsigned long, torali::ReadCount const&)’, inlined from ‘torali::annotateCoverage >, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > > >(torali::Config&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&)void’ at src/coverage.h:265:30: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In function ‘torali::annotateCoverage >, std::vector >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > >, std::vector >, std::allocator > > > >(torali::Config&, std::vector >&, std::vector >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&, std::vector >, std::allocator > > >&)void’: /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned long, torali::ReadCount const&)’ declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: ‘’ declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function ‘std::vector >::resize(unsigned long, torali::ReadCount const&)’, inlined from ‘torali::runTegua(torali::TeguaConfig&)int’ at src/tegua.h:166:26: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In function ‘torali::runTegua(torali::TeguaConfig&)int’: /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned long, torali::ReadCount const&)’ declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:166:39: note: ‘’ declared here 166 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function ‘std::vector >::resize(unsigned long, torali::ReadCount const&)’, inlined from ‘torali::runGraph(torali::GraphConfig&)int’ at src/pangenome.h:772:26: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In function ‘torali::runGraph(torali::GraphConfig&)int’: /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type ‘const struct value_type &’ to ‘std::vector >::_M_fill_insert(__gnu_cxx::__normal_iterator > >, unsigned long, torali::ReadCount const&)’ declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/pangenome.h:772:39: note: ‘’ declared here 772 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function ‘construct’, inlined from ‘allocator_construct’ at /usr/include/boost/core/allocator_access.hpp:432:16, inlined from ‘alloc_construct_n’ at /usr/include/boost/core/alloc_construct.hpp:122:35, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:548:29, inlined from ‘__ct_base .isra’ at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/13/bits/new_allocator.h:187:11: warning: ‘__builtin_memset’ writing 1 or more bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^ In member function ‘allocate’, inlined from ‘allocate_space’ at /usr/include/boost/multi_array.hpp:545:33, inlined from ‘__ct_base .isra’ at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/13/bits/new_allocator.h:147:55: note: destination object of size 0 allocated by ‘operator new’ 147 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ make[2]: Leaving directory '/<>' chrpath -d src/delly make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' # avoiding redundant compile of delly make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a ad587a0ccaefbc77bc78fd8e1221b29252e55bda dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing delly (in debian/delly); do_strip: , oemstrip: pkgstriptranslations: processing delly-dbgsym (in debian/.debhelper/delly/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/delly/DEBIAN/control, package delly, directory debian/delly pkgstripfiles: processing control file: debian/.debhelper/delly/dbgsym-root/DEBIAN/control, package delly-dbgsym, directory debian/.debhelper/delly/dbgsym-root dpkg-deb: building package 'delly-dbgsym' in 'debian/.debhelper/scratch-space/build-delly/delly-dbgsym_1.1.8-1_ppc64el.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package delly ... pkgstripfiles: No PNG files. dpkg-deb: building package 'delly' in '../delly_1.1.8-1_ppc64el.deb'. Renaming delly-dbgsym_1.1.8-1_ppc64el.deb to delly-dbgsym_1.1.8-1_ppc64el.ddeb dpkg-genbuildinfo --build=any -O../delly_1.1.8-1_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../delly_1.1.8-1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-10-26T17:22:54Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ delly_1.1.8-1_ppc64el.changes: ------------------------------ Format: 1.8 Date: Thu, 12 Oct 2023 14:40:44 +0000 Source: delly Binary: delly Built-For-Profiles: noudeb Architecture: ppc64el Version: 1.1.8-1 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Mohammed Bilal Description: delly - Structural variant discovery by read analysis Changes: delly (1.1.8-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 53736971a6e6946ac144b4db6d1874212c11f88f 4909504 delly-dbgsym_1.1.8-1_ppc64el.ddeb 4c6e41a516d31e3661f8011970ec0589c8592ed6 7423 delly_1.1.8-1_ppc64el.buildinfo 1b1d1e0961428a6f812a73909f94ef11c57ec6ba 437190 delly_1.1.8-1_ppc64el.deb Checksums-Sha256: 13072b0d99c088a08555b84c1c349aeb7850d0fc13d99153c59bc021d9082dab 4909504 delly-dbgsym_1.1.8-1_ppc64el.ddeb fd8e9ad363f996324ce17c35064cc174a6b9fcc560d4beae14d0595380894b2c 7423 delly_1.1.8-1_ppc64el.buildinfo 712315d6a8327e50204deb19ffca8796d7fe3977d8150ad19ab0bcc34b26f989 437190 delly_1.1.8-1_ppc64el.deb Files: 28f58e95fff9241680a1db2c0884a6b6 4909504 debug optional delly-dbgsym_1.1.8-1_ppc64el.ddeb 410bd6149264035f255d1a314545ffd1 7423 science optional delly_1.1.8-1_ppc64el.buildinfo f233a5da49928399c019f649d1005956 437190 science optional delly_1.1.8-1_ppc64el.deb /<>/delly_1.1.8-1_ppc64el.changes.new could not be renamed to /<>/delly_1.1.8-1_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: delly Binary: delly delly-dbgsym Architecture: ppc64el Version: 1.1.8-1 Checksums-Md5: 28f58e95fff9241680a1db2c0884a6b6 4909504 delly-dbgsym_1.1.8-1_ppc64el.ddeb f233a5da49928399c019f649d1005956 437190 delly_1.1.8-1_ppc64el.deb Checksums-Sha1: 53736971a6e6946ac144b4db6d1874212c11f88f 4909504 delly-dbgsym_1.1.8-1_ppc64el.ddeb 1b1d1e0961428a6f812a73909f94ef11c57ec6ba 437190 delly_1.1.8-1_ppc64el.deb Checksums-Sha256: 13072b0d99c088a08555b84c1c349aeb7850d0fc13d99153c59bc021d9082dab 4909504 delly-dbgsym_1.1.8-1_ppc64el.ddeb 712315d6a8327e50204deb19ffca8796d7fe3977d8150ad19ab0bcc34b26f989 437190 delly_1.1.8-1_ppc64el.deb Build-Origin: Ubuntu Build-Architecture: ppc64el Build-Date: Thu, 26 Oct 2023 17:22:54 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13), autotools-dev (= 20220109.1), base-files (= 13ubuntu3), base-passwd (= 3.6.1), bash (= 5.2.15-2ubuntu1), binutils (= 2.41-5ubuntu1), binutils-common (= 2.41-5ubuntu1), binutils-powerpc64le-linux-gnu (= 2.41-5ubuntu1), bsdextrautils (= 2.39.1-4ubuntu2), bsdutils (= 1:2.39.1-4ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), chrpath (= 0.16-2), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-13 (= 13.2.0-6ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.7ubuntu1), debianutils (= 5.8-1), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.22.0ubuntu1), dpkg-dev (= 1.22.0ubuntu1), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-6ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-13 (= 13.2.0-6ubuntu1), gcc-13-base (= 13.2.0-6ubuntu1), gettext (= 0.21-13), gettext-base (= 0.21-13), grep (= 3.11-2), groff-base (= 1.23.0-2), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 72.1-3ubuntu3), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-6ubuntu1), libatomic1 (= 13.2.0-6ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libbinutils (= 2.41-5ubuntu1), libblkid1 (= 2.39.1-4ubuntu2), libboost-date-time-dev (= 1.74.0.3ubuntu7), libboost-date-time1.74-dev (= 1.74.0+ds1-23ubuntu1), libboost-date-time1.74.0 (= 1.74.0+ds1-23ubuntu1), libboost-filesystem-dev (= 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2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-6ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-5ubuntu1), libctf0 (= 2.41-5ubuntu1), libcurl3-gnutls (= 8.2.1-1ubuntu3.1), libcurl4-gnutls-dev (= 8.2.1-1ubuntu3.1), libdb5.3 (= 5.3.28+dfsg2-2), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.7ubuntu1), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.0ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-6ubuntu1), libgcc-s1 (= 13.2.0-6ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu1), libgomp1 (= 13.2.0-6ubuntu1), libgpg-error0 (= 1.47-2), libgssapi-krb5-2 (= 1.20.1-3ubuntu1), libhogweed6 (= 3.9.1-2), libhts-dev (= 1.17+ds-1), libhts3 (= 1.17+ds-1), libhtscodecs2 (= 1.5.1-1), libicu-dev (= 72.1-3ubuntu3), libicu72 (= 72.1-3ubuntu3), libidn2-0 (= 2.3.4-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-6ubuntu1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-3ubuntu1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3ubuntu1), libkrb5support0 (= 1.20.1-3ubuntu1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblsan0 (= 13.2.0-6ubuntu1), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.1-0.2), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.1.0-1), libmount1 (= 2.39.1-4ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.55.1-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.25.0-4ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-4), libperl5.36 (= 5.36.0-9ubuntu1), libpipeline1 (= 1.5.7-1), libpsl5 (= 0.21.2-1), libquadmath0 (= 13.2.0-6ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-3), libsasl2-modules-db (= 2.1.28+dfsg1-3), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-5ubuntu1), libsmartcols1 (= 2.39.1-4ubuntu2), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu2.1), libstdc++-13-dev (= 13.2.0-6ubuntu1), libstdc++6 (= 13.2.0-6ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu7), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20230625-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-6ubuntu1), libubsan1 (= 13.2.0-6ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring2 (= 1.0-2), libuuid1 (= 2.39.1-4ubuntu2), libxml2 (= 2.9.14+dfsg-1.3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.0-9.9), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 43), m4 (= 1.4.19-3), make (= 4.3-4.1build1), man-db (= 2.11.2-3), mawk (= 1.3.4.20230730-1), ncurses-base (= 6.4+20230625-2), ncurses-bin (= 6.4+20230625-2), patch (= 2.7.6-7build2), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), util-linux (= 2.39.1-4ubuntu2), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1ubuntu5), zlib1g-dev (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1697121644" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ delly_1.1.8-1_ppc64el.deb ------------------------- new Debian package, version 2.0. size 437190 bytes: control archive=880 bytes. 1037 bytes, 17 lines control 312 bytes, 5 lines md5sums Package: delly Version: 1.1.8-1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1235 Depends: libboost-filesystem1.74.0 (>= 1.74.0+ds1), libboost-iostreams1.74.0 (>= 1.74.0+ds1), libboost-program-options1.74.0 (>= 1.74.0+ds1), libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgomp1 (>= 4.9), libhts3 (>= 1.17), libstdc++6 (>= 13.1) Section: science Priority: optional Homepage: https://github.com/dellytools/delly Description: Structural variant discovery by read analysis Delly performs Structural variant discovery by integrated paired-end and split-read analysis. It discovers, genotypes and visualizes deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. drwxr-xr-x root/root 0 2023-10-12 14:40 ./ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/bin/ -rwxr-xr-x root/root 1247464 2023-10-12 14:40 ./usr/bin/delly drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/doc/delly/ -rw-r--r-- root/root 1120 2023-10-12 14:40 ./usr/share/doc/delly/changelog.Debian.gz -rw-r--r-- root/root 2645 2023-10-12 14:39 ./usr/share/doc/delly/copyright drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/man/ drwxr-xr-x root/root 0 2023-10-12 14:40 ./usr/share/man/man1/ -rw-r--r-- root/root 291 2023-10-12 14:40 ./usr/share/man/man1/delly.1.gz -rw-r--r-- root/root 336 2023-10-12 14:40 ./usr/share/man/man1/dpe.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 33800 Build-Time: 95 Distribution: noble-proposed Host Architecture: ppc64el Install-Time: 191 Job: delly_1.1.8-1.dsc Machine Architecture: ppc64el Package: delly Package-Time: 288 Source-Version: 1.1.8-1 Space: 33800 Status: successful Version: 1.1.8-1 -------------------------------------------------------------------------------- Finished at 2023-10-26T17:22:54Z Build needed 00:04:48, 33800k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=ppc64el PACKAGEBUILD-26914574 Scanning for processes to kill in build PACKAGEBUILD-26914574