https://launchpad.net/ubuntu/+source/diamond-aligner/0.9.22+dfsg-1/+build/14923087 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-051 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 22 May 23:12:03 ntpdate[1812]: adjust time server 10.211.37.1 offset 0.003939 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14923087 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-14923087 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14923087 Starting target for build PACKAGEBUILD-14923087 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14923087 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14923087 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14923087 Updating target for build PACKAGEBUILD-14923087 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1003 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8588 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4983 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [90.6 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [49.0 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [760 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [351 kB] Fetched 16.8 MB in 5s (3246 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 libmount1 libmpx2 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libquadmath0 libreadline7 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv tar tzdata util-linux 85 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 53.7 MB of archives. After this operation, 1510 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-2ubuntu2 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 debianutils i386 4.8.6 [86.1 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 bsdutils i386 1:2.32-0.1ubuntu1 [62.7 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 tar i386 1.30+dfsg-2 [265 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.2-1 [185 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.2-1 [428 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-2ubuntu2 [166 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-modules-5.26 all 5.26.2-5 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libperl5.26 i386 5.26.2-5 [3173 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl i386 5.26.2-5 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-base i386 5.26.2-5 [1495 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuuid1 i386 2.32-0.1ubuntu1 [20.6 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libblkid1 i386 2.32-0.1ubuntu1 [143 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libfdisk1 i386 2.32-0.1ubuntu1 [186 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-2ubuntu2 [141 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmount1 i386 2.32-0.1ubuntu1 [152 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsmartcols1 i386 2.32-0.1ubuntu1 [94.0 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 fdisk i386 2.32-0.1ubuntu1 [118 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 util-linux i386 2.32-0.1ubuntu1 [943 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libquadmath0 i386 8.1.0-3ubuntu2 [208 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libitm1 i386 8.1.0-3ubuntu2 [30.8 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-8-base i386 8.1.0-3ubuntu2 [18.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc1 i386 1:8.1.0-3ubuntu2 [48.1 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmpx2 i386 8.1.0-3ubuntu2 [12.9 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcc1-0 i386 8.1.0-3ubuntu2 [41.9 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libatomic1 i386 8.1.0-3ubuntu2 [9632 B] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgomp1 i386 8.1.0-3ubuntu2 [80.8 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++6 i386 8.1.0-3ubuntu2 [430 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libudev1 i386 237-3ubuntu11 [57.4 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha0ubuntu1 [872 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 adduser all 3.117ubuntu1 [163 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha0ubuntu1 [1195 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit-common all 1:2.8.3-1ubuntu1 [4052 B] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit1 i386 1:2.8.3-1ubuntu1 [40.1 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.31-1 [60.9 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 mount i386 2.32-0.1ubuntu1 [110 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-2ubuntu2 [108 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps6 i386 2:3.3.12-3ubuntu2 [32.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.12-3ubuntu2 [224 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd i386 237-3ubuntu11 [2947 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsystemd0 i386 237-3ubuntu11 [221 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd-sysv i386 237-3ubuntu11 [11.6 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.2-1 [9520 B] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libsepol1 i386 2.7-2 [274 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.2-1 [11.6 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-2ubuntu2 [101 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-2ubuntu2 [128 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-2ubuntu2 [79.7 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.10-2 [179 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 libtasn1-6 i386 4.13-3 [38.8 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-0 i386 0~20161029-2 [25.0 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.23.1-1 [536 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.30-20ubuntu2 [193 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.30-20ubuntu2 [3396 B] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.30-20ubuntu2 [2028 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.30-20ubuntu2 [543 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libasan4 i386 7.3.0-19ubuntu2 [361 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libubsan0 i386 7.3.0-19ubuntu2 [141 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcilkrts5 i386 7.3.0-19ubuntu2 [47.3 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++-7 i386 7.3.0-19ubuntu2 [7817 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7 i386 7.3.0-19ubuntu2 [7692 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++-7-dev i386 7.3.0-19ubuntu2 [1505 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc-7-dev i386 7.3.0-19ubuntu2 [2395 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp-7 i386 7.3.0-19ubuntu2 [6964 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7-base i386 7.3.0-19ubuntu2 [18.9 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:7.3.0-3ubuntu3 [27.6 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:7.3.0-3ubuntu3 [5268 B] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:7.3.0-3ubuntu3 [1596 B] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.2-1 [2700 B] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.2-1 [2696 B] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.15.0-22.24 [1002 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 pinentry-curses i386 1.1.0-1build1 [37.7 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main i386 pkgbinarymangler all 139 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 53.7 MB in 6s (9584 kB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_i386.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_i386.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_i386.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_i386.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.2-1_i386.deb ... Unpacking libext2fs2:i386 (1.44.2-1) over (1.44.1-1) ... Setting up libext2fs2:i386 (1.44.2-1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.2-1_i386.deb ... Unpacking e2fsprogs (1.44.2-1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.2-1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_i386.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../perl_5.26.2-5_i386.deb ... Unpacking perl (5.26.2-5) over (5.26.1-6) ... Preparing to unpack .../perl-modules-5.26_5.26.2-5_all.deb ... Unpacking perl-modules-5.26 (5.26.2-5) over (5.26.1-6) ... Preparing to unpack .../libperl5.26_5.26.2-5_i386.deb ... Unpacking libperl5.26:i386 (5.26.2-5) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.2-5_i386.deb ... Unpacking perl-base (5.26.2-5) over (5.26.1-6) ... Setting up perl-base (5.26.2-5) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libuuid1_2.32-0.1ubuntu1_i386.deb ... Unpacking libuuid1:i386 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:i386 (2.32-0.1ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libblkid1_2.32-0.1ubuntu1_i386.deb ... Unpacking libblkid1:i386 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:i386 (2.32-0.1ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.32-0.1ubuntu1_i386.deb ... Unpacking libfdisk1:i386 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:i386 (2.32-0.1ubuntu1) ... Selecting previously unselected package libncursesw6:i386. (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libncursesw6:i386 (6.1+20180210-2ubuntu2) ... Setting up libncursesw6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libmount1_2.32-0.1ubuntu1_i386.deb ... Unpacking libmount1:i386 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:i386 (2.32-0.1ubuntu1) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.32-0.1ubuntu1_i386.deb ... Unpacking libsmartcols1:i386 (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:i386 (2.32-0.1ubuntu1) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../fdisk_2.32-0.1ubuntu1_i386.deb ... Unpacking fdisk (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.32-0.1ubuntu1) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../util-linux_2.32-0.1ubuntu1_i386.deb ... Unpacking util-linux (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Setting up util-linux (2.32-0.1ubuntu1) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.45_i386.deb ... Unpacking base-passwd (3.5.45) over (3.5.44) ... Setting up base-passwd (3.5.45) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.1+20180210-2ubuntu2_all.deb ... Unpacking ncurses-base (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-base (6.1+20180210-2ubuntu2) ... (Reading database ... 12650 files and directories currently installed.) Preparing to unpack .../libquadmath0_8.1.0-3ubuntu2_i386.deb ... Unpacking libquadmath0:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libitm1_8.1.0-3ubuntu2_i386.deb ... Unpacking libitm1:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../gcc-8-base_8.1.0-3ubuntu2_i386.deb ... Unpacking gcc-8-base:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:i386 (8.1.0-3ubuntu2) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.1.0-3ubuntu2_i386.deb ... Unpacking libgcc1:i386 (1:8.1.0-3ubuntu2) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:i386 (1:8.1.0-3ubuntu2) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libmpx2_8.1.0-3ubuntu2_i386.deb ... Unpacking libmpx2:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libcc1-0_8.1.0-3ubuntu2_i386.deb ... Unpacking libcc1-0:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libatomic1_8.1.0-3ubuntu2_i386.deb ... Unpacking libatomic1:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libgomp1_8.1.0-3ubuntu2_i386.deb ... Unpacking libgomp1:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libstdc++6_8.1.0-3ubuntu2_i386.deb ... Unpacking libstdc++6:i386 (8.1.0-3ubuntu2) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:i386 (8.1.0-3ubuntu2) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libudev1_237-3ubuntu11_i386.deb ... Unpacking libudev1:i386 (237-3ubuntu11) over (237-3ubuntu10) ... Setting up libudev1:i386 (237-3ubuntu11) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.7.0~alpha0ubuntu1_i386.deb ... Unpacking libapt-pkg5.0:i386 (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up libapt-pkg5.0:i386 (1.7.0~alpha0ubuntu1) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../adduser_3.117ubuntu1_all.deb ... Unpacking adduser (3.117ubuntu1) over (3.116ubuntu1) ... Setting up adduser (3.117ubuntu1) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../apt_1.7.0~alpha0ubuntu1_i386.deb ... Unpacking apt (1.7.0~alpha0ubuntu1) over (1.6.1) ... Setting up apt (1.7.0~alpha0ubuntu1) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.8.3-1ubuntu1_all.deb ... Unpacking libaudit-common (1:2.8.3-1ubuntu1) over (1:2.8.2-1ubuntu1) ... Setting up libaudit-common (1:2.8.3-1ubuntu1) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-1_i386.deb ... Unpacking libcap-ng0:i386 (0.7.9-1) over (0.7.7-3.1) ... Setting up libcap-ng0:i386 (0.7.9-1) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.8.3-1ubuntu1_i386.deb ... Unpacking libaudit1:i386 (1:2.8.3-1ubuntu1) over (1:2.8.2-1ubuntu1) ... Setting up libaudit1:i386 (1:2.8.3-1ubuntu1) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.31-1_i386.deb ... Unpacking libgpg-error0:i386 (1.31-1) over (1.27-6) ... Setting up libgpg-error0:i386 (1.31-1) ... (Reading database ... 12649 files and directories currently installed.) Preparing to unpack .../0-mount_2.32-0.1ubuntu1_i386.deb ... Unpacking mount (2.32-0.1ubuntu1) over (2.31.1-0.4ubuntu3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../1-libncurses6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libncurses6:i386 (6.1+20180210-2ubuntu2) ... Preparing to unpack .../2-libprocps6_2%3a3.3.12-3ubuntu2_i386.deb ... Unpacking libprocps6:i386 (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Preparing to unpack .../3-procps_2%3a3.3.12-3ubuntu2_i386.deb ... Unpacking procps (2:3.3.12-3ubuntu2) over (2:3.3.12-3ubuntu1) ... Preparing to unpack .../4-systemd_237-3ubuntu11_i386.deb ... Unpacking systemd (237-3ubuntu11) over (237-3ubuntu10) ... Preparing to unpack .../5-libsystemd0_237-3ubuntu11_i386.deb ... Unpacking libsystemd0:i386 (237-3ubuntu11) over (237-3ubuntu10) ... Setting up libsystemd0:i386 (237-3ubuntu11) ... Setting up mount (2.32-0.1ubuntu1) ... Setting up libncurses6:i386 (6.1+20180210-2ubuntu2) ... Setting up libprocps6:i386 (2:3.3.12-3ubuntu2) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up systemd (237-3ubuntu11) ... (Reading database ... 12658 files and directories currently installed.) Preparing to unpack .../systemd-sysv_237-3ubuntu11_i386.deb ... Unpacking systemd-sysv (237-3ubuntu11) over (237-3ubuntu10) ... Preparing to unpack .../libcom-err2_1.44.2-1_i386.deb ... Unpacking libcom-err2:i386 (1.44.2-1) over (1.44.1-1) ... Setting up libcom-err2:i386 (1.44.2-1) ... (Reading database ... 12658 files and directories currently installed.) Preparing to unpack .../libsepol1_2.7-2_i386.deb ... Unpacking libsepol1:i386 (2.7-2) over (2.7-1) ... Setting up libsepol1:i386 (2.7-2) ... (Reading database ... 12658 files and directories currently installed.) Preparing to unpack .../libss2_1.44.2-1_i386.deb ... Unpacking libss2:i386 (1.44.2-1) over (1.44.1-1) ... Setting up libss2:i386 (1.44.2-1) ... (Reading database ... 12658 files and directories currently installed.) Preparing to unpack .../libncurses5_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libncurses5:i386 (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libncursesw5_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libncursesw5:i386 (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libtinfo5:i386 (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up libtinfo5:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.2+dfsg-3_i386.deb ... Unpacking libgmp10:i386 (2:6.1.2+dfsg-3) over (2:6.1.2+dfsg-2) ... Setting up libgmp10:i386 (2:6.1.2+dfsg-3) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.10-2_i386.deb ... Unpacking libp11-kit0:i386 (0.23.10-2) over (0.23.9-2) ... Setting up libp11-kit0:i386 (0.23.10-2) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.13-3_i386.deb ... Unpacking libtasn1-6:i386 (4.13-3) over (4.13-2) ... Setting up libtasn1-6:i386 (4.13-3) ... (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../00-libargon2-0_0~20161029-2_i386.deb ... Unpacking libargon2-0:i386 (0~20161029-2) over (0~20161029-1.1) ... Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) over (7.0-3) ... Preparing to unpack .../02-libreadline7_7.0-5_i386.deb ... Unpacking libreadline7:i386 (7.0-5) over (7.0-3) ... Preparing to unpack .../03-libslang2_2.3.2-1ubuntu1_i386.deb ... Unpacking libslang2:i386 (2.3.2-1ubuntu1) over (2.3.1a-3ubuntu1) ... Preparing to unpack .../04-libsqlite3-0_3.23.1-1_i386.deb ... Unpacking libsqlite3-0:i386 (3.23.1-1) over (3.22.0-1) ... Preparing to unpack .../05-tzdata_2018e-1_all.deb ... Unpacking tzdata (2018e-1) over (2018d-1) ... Preparing to unpack .../06-binutils-common_2.30-20ubuntu2_i386.deb ... Unpacking binutils-common:i386 (2.30-20ubuntu2) over (2.30-15ubuntu1) ... Preparing to unpack .../07-binutils_2.30-20ubuntu2_i386.deb ... Unpacking binutils (2.30-20ubuntu2) over (2.30-15ubuntu1) ... Preparing to unpack .../08-binutils-i686-linux-gnu_2.30-20ubuntu2_i386.deb ... Unpacking binutils-i686-linux-gnu (2.30-20ubuntu2) over (2.30-15ubuntu1) ... Preparing to unpack .../09-libbinutils_2.30-20ubuntu2_i386.deb ... Unpacking libbinutils:i386 (2.30-20ubuntu2) over (2.30-15ubuntu1) ... Preparing to unpack .../10-libasan4_7.3.0-19ubuntu2_i386.deb ... Unpacking libasan4:i386 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../11-libubsan0_7.3.0-19ubuntu2_i386.deb ... Unpacking libubsan0:i386 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../12-libcilkrts5_7.3.0-19ubuntu2_i386.deb ... Unpacking libcilkrts5:i386 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../13-g++-7_7.3.0-19ubuntu2_i386.deb ... Unpacking g++-7 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../14-gcc-7_7.3.0-19ubuntu2_i386.deb ... Unpacking gcc-7 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../15-libstdc++-7-dev_7.3.0-19ubuntu2_i386.deb ... Unpacking libstdc++-7-dev:i386 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../16-libgcc-7-dev_7.3.0-19ubuntu2_i386.deb ... Unpacking libgcc-7-dev:i386 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../17-cpp-7_7.3.0-19ubuntu2_i386.deb ... Unpacking cpp-7 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../18-gcc-7-base_7.3.0-19ubuntu2_i386.deb ... Unpacking gcc-7-base:i386 (7.3.0-19ubuntu2) over (7.3.0-16ubuntu3) ... Preparing to unpack .../19-cpp_4%3a7.3.0-3ubuntu3_i386.deb ... Unpacking cpp (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../20-gcc_4%3a7.3.0-3ubuntu3_i386.deb ... Unpacking gcc (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../21-g++_4%3a7.3.0-3ubuntu3_i386.deb ... Unpacking g++ (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../22-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../23-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../24-build-essential_12.5ubuntu2_i386.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../25-e2fslibs_1.44.2-1_i386.deb ... Unpacking e2fslibs:i386 (1.44.2-1) over (1.44.1-1) ... Preparing to unpack .../26-libcomerr2_1.44.2-1_i386.deb ... Unpacking libcomerr2:i386 (1.44.2-1) over (1.44.1-1) ... Preparing to unpack .../27-libusb-0.1-4_2%3a0.1.12-32_i386.deb ... Unpacking libusb-0.1-4:i386 (2:0.1.12-32) over (2:0.1.12-31) ... Preparing to unpack .../28-linux-libc-dev_4.15.0-22.24_i386.deb ... Unpacking linux-libc-dev:i386 (4.15.0-22.24) over (4.15.0-20.21) ... Preparing to unpack .../29-pinentry-curses_1.1.0-1build1_i386.deb ... Unpacking pinentry-curses (1.1.0-1build1) over (1.1.0-1) ... Preparing to unpack .../30-pkgbinarymangler_139_all.deb ... Unpacking pkgbinarymangler (139) over (138) ... Setting up libquadmath0:i386 (8.1.0-3ubuntu2) ... Setting up libncurses5:i386 (6.1+20180210-2ubuntu2) ... Setting up libgomp1:i386 (8.1.0-3ubuntu2) ... Setting up libatomic1:i386 (8.1.0-3ubuntu2) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:i386 (8.1.0-3ubuntu2) ... Setting up pkgbinarymangler (139) ... Setting up e2fslibs:i386 (1.44.2-1) ... Setting up libncursesw5:i386 (6.1+20180210-2ubuntu2) ... Setting up libreadline7:i386 (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue May 22 23:12:53 UTC 2018. Universal Time is now: Tue May 22 23:12:53 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (237-3ubuntu11) ... Setting up linux-libc-dev:i386 (4.15.0-22.24) ... Setting up perl-modules-5.26 (5.26.2-5) ... Setting up libargon2-0:i386 (0~20161029-2) ... Setting up gcc-7-base:i386 (7.3.0-19ubuntu2) ... Setting up binutils-common:i386 (2.30-20ubuntu2) ... Setting up libmpx2:i386 (8.1.0-3ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:i386 (5.26.2-5) ... Setting up libsqlite3-0:i386 (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:i386 (1.44.2-1) ... Setting up libslang2:i386 (2.3.2-1ubuntu1) ... Setting up libusb-0.1-4:i386 (2:0.1.12-32) ... Setting up libitm1:i386 (8.1.0-3ubuntu2) ... Setting up libasan4:i386 (7.3.0-19ubuntu2) ... Setting up libbinutils:i386 (2.30-20ubuntu2) ... Setting up libcilkrts5:i386 (7.3.0-19ubuntu2) ... Setting up libubsan0:i386 (7.3.0-19ubuntu2) ... Setting up libgcc-7-dev:i386 (7.3.0-19ubuntu2) ... Setting up cpp-7 (7.3.0-19ubuntu2) ... Setting up libstdc++-7-dev:i386 (7.3.0-19ubuntu2) ... Setting up perl (5.26.2-5) ... Setting up binutils-i686-linux-gnu (2.30-20ubuntu2) ... Setting up binutils (2.30-20ubuntu2) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-19ubuntu2) ... Setting up g++-7 (7.3.0-19ubuntu2) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14923087 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-14923087 --arch=i386 --dist=cosmic-proposed --nolog diamond-aligner_0.9.22+dfsg-1.dsc Initiating build PACKAGEBUILD-14923087 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-051.buildd +==============================================================================+ | diamond-aligner 0.9.22+dfsg-1 (i386) 22 May 2018 23:12 | +==============================================================================+ Package: diamond-aligner Version: 0.9.22+dfsg-1 Source Version: 0.9.22+dfsg-1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/diamond-aligner-1ReJwO/diamond-aligner-0.9.22+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-1ReJwO' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14923087/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- diamond-aligner_0.9.22+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-HXo5OP/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-HXo5OP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-HXo5OP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-HXo5OP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-HXo5OP/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-HXo5OP/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (149 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-HXo5OP/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-diamond-aligner-dummy' in '/<>/resolver-C_DAlF/apt_archive/sbuild-build-depends-diamond-aligner-dummy.deb'. Ign:1 copy:/<>/resolver-C_DAlF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-C_DAlF/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-C_DAlF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-C_DAlF/apt_archive ./ Sources [230 B] Get:5 copy:/<>/resolver-C_DAlF/apt_archive ./ Packages [547 B] Fetched 2896 B in 0s (254 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install diamond-aligner build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libcroco3 libcurl4 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libcroco3 libcurl4 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-diamond-aligner-dummy zlib1g-dev 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 24.8 MB of archives. After this operation, 98.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-C_DAlF/apt_archive ./ sbuild-build-depends-diamond-aligner-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.9.0-1 [48.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.33-2 [193 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.33-2 [76.6 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.33-2 [22.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libexpat1 i386 2.2.5-3 [78.1 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libxml2 i386 2.9.4+dfsg1-6.1ubuntu1 [697 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-6build1 [51.3 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5support0 i386 1.16-2build1 [32.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libk5crypto3 i386 1.16-2build1 [90.0 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libkeyutils1 i386 1.5.9-9.2ubuntu3 [8940 B] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-3 i386 1.16-2build1 [303 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi-krb5-2 i386 1.16-2build1 [132 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 libpsl5 i386 0.20.1-1 [49.8 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cmake-data all 3.11.2-1 [1367 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 liblzo2-2 i386 2.10-0.1 [52.8 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive13 i386 3.2.2-3.1 [328 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 libroken18-heimdal i386 7.5.0+dfsg-1 [44.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-1 [183 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-1 [32.1 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-1 [92.6 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libwind0-heimdal i386 7.5.0+dfsg-1 [48.3 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-1 [118 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-26-heimdal i386 7.5.0+dfsg-1 [232 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimntlm0-heimdal i386 7.5.0+dfsg-1 [16.4 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi3-heimdal i386 7.5.0+dfsg-1 [106 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-modules-db i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [15.6 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-2 i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [52.8 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-2.4-2 i386 2.4.46+dfsg-5ubuntu1 [167 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libnghttp2-14 i386 1.30.0-1ubuntu1 [83.0 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [58.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcurl4 i386 7.58.0-2ubuntu4 [238 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 libjsoncpp1 i386 1.7.4-3 [82.7 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 librhash0 i386 1.3.6-2 [90.7 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libuv1 i386 1.18.0-3 [70.0 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cmake i386 3.11.2-1 [3465 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libtool all 2.4.6-2.1 [195 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 19 [16.1 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.041-1 [5188 B] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.2.1ubuntu1 [906 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.8 MB in 1s (44.1 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.0-1_i386.deb ... Unpacking libbsd0:i386 (0.9.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_i386.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-2_i386.deb ... Unpacking libmagic-mgc (1:5.33-2) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../06-libmagic1_1%3a5.33-2_i386.deb ... Unpacking libmagic1:i386 (1:5.33-2) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.33-2_i386.deb ... Unpacking file (1:5.33-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../08-libexpat1_2.2.5-3_i386.deb ... Unpacking libexpat1:i386 (2.2.5-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../09-libglib2.0-0_2.56.1-2ubuntu1_i386.deb ... Unpacking libglib2.0-0:i386 (2.56.1-2ubuntu1) ... Selecting previously unselected package libicu60:i386. Preparing to unpack .../10-libicu60_60.2-6ubuntu1_i386.deb ... Unpacking libicu60:i386 (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../11-libxml2_2.9.4+dfsg1-6.1ubuntu1_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.19.8.1-6build1_i386.deb ... Unpacking gettext-base (0.19.8.1-6build1) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../13-libkrb5support0_1.16-2build1_i386.deb ... Unpacking libkrb5support0:i386 (1.16-2build1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../14-libk5crypto3_1.16-2build1_i386.deb ... Unpacking libk5crypto3:i386 (1.16-2build1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../15-libkeyutils1_1.5.9-9.2ubuntu3_i386.deb ... Unpacking libkeyutils1:i386 (1.5.9-9.2ubuntu3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../16-libkrb5-3_1.16-2build1_i386.deb ... Unpacking libkrb5-3:i386 (1.16-2build1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../17-libgssapi-krb5-2_1.16-2build1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.16-2build1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../18-libpsl5_0.20.1-1_i386.deb ... Unpacking libpsl5:i386 (0.20.1-1) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../19-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../20-m4_1.4.18-1_i386.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../21-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../22-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../23-automake_1%3a1.15.1-3ubuntu2_all.deb ... Unpacking automake (1:1.15.1-3ubuntu2) ... Selecting previously unselected package autopoint. Preparing to unpack .../24-autopoint_0.19.8.1-6build1_all.deb ... Unpacking autopoint (0.19.8.1-6build1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../25-cmake-data_3.11.2-1_all.deb ... Unpacking cmake-data (3.11.2-1) ... Selecting previously unselected package liblzo2-2:i386. Preparing to unpack .../26-liblzo2-2_2.10-0.1_i386.deb ... Unpacking liblzo2-2:i386 (2.10-0.1) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../27-libarchive13_3.2.2-3.1_i386.deb ... Unpacking libarchive13:i386 (3.2.2-3.1) ... Selecting previously unselected package libroken18-heimdal:i386. Preparing to unpack .../28-libroken18-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libroken18-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libasn1-8-heimdal:i386. Preparing to unpack .../29-libasn1-8-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libasn1-8-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libheimbase1-heimdal:i386. Preparing to unpack .../30-libheimbase1-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libheimbase1-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libhcrypto4-heimdal:i386. Preparing to unpack .../31-libhcrypto4-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libhcrypto4-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libwind0-heimdal:i386. Preparing to unpack .../32-libwind0-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libwind0-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libhx509-5-heimdal:i386. Preparing to unpack .../33-libhx509-5-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libhx509-5-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libkrb5-26-heimdal:i386. Preparing to unpack .../34-libkrb5-26-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libkrb5-26-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libheimntlm0-heimdal:i386. Preparing to unpack .../35-libheimntlm0-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libheimntlm0-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libgssapi3-heimdal:i386. Preparing to unpack .../36-libgssapi3-heimdal_7.5.0+dfsg-1_i386.deb ... Unpacking libgssapi3-heimdal:i386 (7.5.0+dfsg-1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../37-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../38-libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Selecting previously unselected package libldap-common. Preparing to unpack .../39-libldap-common_2.4.46+dfsg-5ubuntu1_all.deb ... Unpacking libldap-common (2.4.46+dfsg-5ubuntu1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../40-libldap-2.4-2_2.4.46+dfsg-5ubuntu1_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.46+dfsg-5ubuntu1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../41-libnghttp2-14_1.30.0-1ubuntu1_i386.deb ... Unpacking libnghttp2-14:i386 (1.30.0-1ubuntu1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../43-libcurl4_7.58.0-2ubuntu4_i386.deb ... Unpacking libcurl4:i386 (7.58.0-2ubuntu4) ... Selecting previously unselected package libjsoncpp1:i386. Preparing to unpack .../44-libjsoncpp1_1.7.4-3_i386.deb ... Unpacking libjsoncpp1:i386 (1.7.4-3) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../45-librhash0_1.3.6-2_i386.deb ... Unpacking librhash0:i386 (1.3.6-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../46-libuv1_1.18.0-3_i386.deb ... Unpacking libuv1:i386 (1.18.0-3) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_3.11.2-1_i386.deb ... Unpacking cmake (3.11.2-1) ... Selecting previously unselected package libtool. Preparing to unpack .../48-libtool_2.4.6-2.1_all.deb ... Unpacking libtool (2.4.6-2.1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../49-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../50-libarchive-zip-perl_1.60-1_all.deb ... Unpacking libarchive-zip-perl (1.60-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../51-libfile-stripnondeterminism-perl_0.041-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.041-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../52-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../53-dh-strip-nondeterminism_0.041-1_all.deb ... Unpacking dh-strip-nondeterminism (0.041-1) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../54-libcroco3_0.6.12-2_i386.deb ... Unpacking libcroco3:i386 (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../55-gettext_0.19.8.1-6build1_i386.deb ... Unpacking gettext (0.19.8.1-6build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../56-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../57-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../58-debhelper_11.2.1ubuntu1_all.deb ... Unpacking debhelper (11.2.1ubuntu1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../59-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package sbuild-build-depends-diamond-aligner-dummy. Preparing to unpack .../60-sbuild-build-depends-diamond-aligner-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-diamond-aligner-dummy (0.invalid.0) ... Setting up libexpat1:i386 (2.2.5-3) ... Setting up libicu60:i386 (60.2-6ubuntu1) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up libnghttp2-14:i386 (1.30.0-1ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu1) ... Setting up libuv1:i386 (1.18.0-3) ... Setting up libpsl5:i386 (0.20.1-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:i386 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up cmake-data (3.11.2-1) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up libroken18-heimdal:i386 (7.5.0+dfsg-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.9.0-1) ... Setting up libkrb5support0:i386 (1.16-2build1) ... Setting up libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:i386 (1:5.33-2) ... Setting up librhash0:i386 (1.3.6-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:i386 (7.5.0+dfsg-1) ... Setting up libkeyutils1:i386 (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6build1) ... Setting up liblzo2-2:i386 (2.10-0.1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libk5crypto3:i386 (1.16-2build1) ... Setting up libwind0-heimdal:i386 (7.5.0+dfsg-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libarchive13:i386 (3.2.2-3.1) ... Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-1) ... Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:i386 (1.16-2build1) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-1) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-1) ... Setting up libtool (2.4.6-2.1) ... Setting up po-debconf (1.0.20) ... Setting up libgssapi-krb5-2:i386 (1.16-2build1) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-1) ... Setting up libldap-2.4-2:i386 (2.4.46+dfsg-5ubuntu1) ... Setting up libcurl4:i386 (7.58.0-2ubuntu4) ... Setting up cmake (3.11.2-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up sbuild-build-depends-diamond-aligner-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-124-generic amd64 (i686) Toolchain package versions: binutils_2.30-20ubuntu2 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-19ubuntu2 gcc-7_7.3.0-19ubuntu2 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-19ubuntu2 libstdc++6_8.1.0-3ubuntu2 linux-libc-dev_4.15.0-22.24 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-20ubuntu2 binutils-common_2.30-20ubuntu2 binutils-i686-linux-gnu_2.30-20ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 cmake_3.11.2-1 cmake-data_3.11.2-1 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-19ubuntu2 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.2-1 e2fsprogs_1.44.2-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-19ubuntu2 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-19ubuntu2 gcc-7-base_7.3.0-19ubuntu2 gcc-8-base_8.1.0-3ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libargon2-0_0~20161029-2 libasan4_7.3.0-19ubuntu2 libasn1-8-heimdal_7.5.0+dfsg-1 libassuan0_2.5.1-2 libatomic1_8.1.0-3ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu1 libaudit1_1:2.8.3-1ubuntu1 libbinutils_2.30-20ubuntu2 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.0-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3ubuntu2 libcilkrts5_7.3.0-19ubuntu2 libcom-err2_1.44.2-1 libcomerr2_1.44.2-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libcurl4_7.58.0-2ubuntu4 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libexpat1_2.2.5-3 libext2fs2_1.44.2-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-19ubuntu2 libgcc1_1:8.1.0-3ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-3ubuntu2 libgpg-error0_1.31-1 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-3ubuntu2 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libldap-2.4-2_2.4.46+dfsg-5ubuntu1 libldap-common_2.4.46+dfsg-5ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-3ubuntu2 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnghttp2-14_1.30.0-1ubuntu1 libnpth0_1.5-3 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.2-5 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsl5_0.20.1-1 libquadmath0_8.1.0-3ubuntu2 libreadline7_7.0-5 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-2 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.23.1-1 libss2_1.44.2-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-19ubuntu2 libstdc++6_8.1.0-3ubuntu2 libsystemd0_237-3ubuntu11 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-19ubuntu2 libudev1_237-3ubuntu11 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libuv1_1.18.0-3 libwind0-heimdal_7.5.0+dfsg-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-22.24 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-5 perl-base_5.26.2-5 perl-modules-5.26_5.26.2-5 pinentry-curses_1.1.0-1build1 pkgbinarymangler_139 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-diamond-aligner-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu11 systemd-sysv_237-3ubuntu11 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue May 22 14:21:38 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./diamond-aligner_0.9.22+dfsg-1.dsc dpkg-source: info: extracting diamond-aligner in diamond-aligner-0.9.22+dfsg dpkg-source: info: unpacking diamond-aligner_0.9.22+dfsg.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_0.9.22+dfsg-1.debian.tar.xz dpkg-source: info: applying avoid_unwanted_optimisation.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14923087 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14923087 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14923087 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 0.9.22+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build diamond-aligner-0.9.22+dfsg dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-i686-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_MARCHNATIVE -- Performing Test COMPILER_SUPPORTS_MARCHNATIVE - Success -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu dh_auto_build -a cd obj-i686-linux-gnu && make -j4 -Oline "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -H/<>/diamond-aligner-0.9.22+dfsg -B/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/Makefile2 all make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' cd /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake --color= Scanning dependencies of target diamond make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 1%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 2%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 3%] Building CXX object CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 4%] Building CXX object CMakeFiles/diamond.dir/src/util/tinythread.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/tinythread.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/tinythread.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 5%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/blast_filter.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 7%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/blast_seg.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/score_matrix.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 8%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum45.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 9%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 10%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum50.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 11%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum62.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum80.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 13%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 14%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum90.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 15%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam30.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 16%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam70.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 17%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam250.c make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 19%] Building CXX object CMakeFiles/diamond.dir/src/data/reference.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/queries.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/queries.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 20%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 21%] Building CXX object CMakeFiles/diamond.dir/src/output/daa_record.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/seed_histogram.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 22%] Building CXX object CMakeFiles/diamond.dir/src/search/search.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/config.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 23%] Building CXX object CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/daa_record.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/daa_record.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 25%] Building CXX object CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/reference.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/reference.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 26%] Building CXX object CMakeFiles/diamond.dir/src/util/util.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/search.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/search.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 27%] Building CXX object CMakeFiles/diamond.dir/src/util/Timer.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/Timer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/Timer.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 28%] Building CXX object CMakeFiles/diamond.dir/src/basic/basic.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/seq_file_format.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 29%] Building CXX object CMakeFiles/diamond.dir/src/basic/hssp.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/util.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/util.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 30%] Building CXX object CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/command_line_parser.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 32%] Building CXX object CMakeFiles/diamond.dir/src/run/tools.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/ungapped_align.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 33%] Building CXX object CMakeFiles/diamond.dir/src/dp/greedy_align.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/hssp.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/hssp.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 34%] Building CXX object CMakeFiles/diamond.dir/src/search/stage2.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/basic.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/basic.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 35%] Building CXX object CMakeFiles/diamond.dir/src/output/output_format.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/stage2.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/stage2.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 36%] Building CXX object CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/run/tools.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/run/tools.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 38%] Building CXX object CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/output_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/output_format.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 39%] Building CXX object CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/greedy_align.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/greedy_align.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 40%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/frequent_seeds.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 41%] Building CXX object CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/padded_banded_sw.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 42%] Building CXX object CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/blast_tab_format.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 44%] Building CXX object CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/join_blocks.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 45%] Building CXX object CMakeFiles/diamond.dir/src/extra/roc.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/align/query_mapper.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 46%] Building CXX object CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/needleman_wunsch.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 47%] Building CXX object CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/blast_pairwise_format.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 48%] Building CXX object CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/comp_based_stats.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 50%] Building CXX object CMakeFiles/diamond.dir/src/search/collision.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/extra/model_sim.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 51%] Building CXX object CMakeFiles/diamond.dir/src/output/sam_format.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/collision.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/collision.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 52%] Building CXX object CMakeFiles/diamond.dir/src/align/align.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/extra/roc.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/extra/roc.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 53%] Building CXX object CMakeFiles/diamond.dir/src/search/setup.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/sam_format.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 54%] Building CXX object CMakeFiles/diamond.dir/src/extra/opt.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/align.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/align/align.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 55%] Building CXX object CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/setup.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/setup.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 57%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/extra/opt.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/extra/opt.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/diag_scores.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 59%] Building CXX object CMakeFiles/diamond.dir/src/basic/masking.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 60%] Building CXX object CMakeFiles/diamond.dir/src/dp/swipe/swipe.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o -c /<>/diamond-aligner-0.9.22+dfsg/src/lib/tantan/tantan.cc make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 61%] Building CXX object CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/masking.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/masking.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 63%] Building CXX object CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/taxonomy.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 64%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_set.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/banded_sw.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 65%] Building CXX object CMakeFiles/diamond.dir/src/util/simd.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/swipe/swipe.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/swipe/swipe.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 66%] Building CXX object CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/simd.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/simd.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 67%] Building CXX object CMakeFiles/diamond.dir/src/output/view.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/sorted_list.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 69%] Building CXX object CMakeFiles/diamond.dir/src/output/output_sink.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/taxon_format.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 70%] Building CXX object CMakeFiles/diamond.dir/src/output/target_culling.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/seed_set.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 71%] Building CXX object CMakeFiles/diamond.dir/src/align/greedy_pipeline.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/output_sink.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/output_sink.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 72%] Building CXX object CMakeFiles/diamond.dir/src/align/swipe_pipeline.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/view.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/view.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 73%] Building CXX object CMakeFiles/diamond.dir/src/dp/swipe/banded_3frame_swipe.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/target_culling.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/target_culling.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 75%] Building CXX object CMakeFiles/diamond.dir/src/dp/swipe/banded_swipe.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/swipe_pipeline.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/align/swipe_pipeline.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 76%] Building CXX object CMakeFiles/diamond.dir/src/align/banded_swipe_pipeline.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/swipe/banded_swipe.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/swipe/banded_swipe.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 77%] Building CXX object CMakeFiles/diamond.dir/src/data/ref_dictionary.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/greedy_pipeline.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/align/greedy_pipeline.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 78%] Building CXX object CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/compressed_stream.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 79%] Building CXX object CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/ref_dictionary.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/ref_dictionary.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 80%] Building CXX object CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/swipe/banded_3frame_swipe.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 82%] Building CXX object CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/deserializer.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 83%] Building CXX object CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/file_sink.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 84%] Building CXX object CMakeFiles/diamond.dir/src/util/io/input_stream_buffer.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/file_source.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 85%] Building CXX object CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/input_file.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 86%] Building CXX object CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/banded_swipe_pipeline.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/align/banded_swipe_pipeline.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 88%] Building CXX object CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/input_stream_buffer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/input_stream_buffer.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 89%] Building CXX object CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/serializer.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 90%] Building CXX object CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/output_stream_buffer.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 91%] Building CXX object CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/output_file.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 92%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/temp_file.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 94%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/algo/MurmurHash3.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 95%] Building CXX object CMakeFiles/diamond.dir/src/search/stage0.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/text_input_file.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 96%] Building CXX object CMakeFiles/diamond.dir/src/util/memory/memory_pool.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/memory/memory_pool.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/memory/memory_pool.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 97%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_array.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/taxonomy_nodes.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 98%] Building CXX object CMakeFiles/diamond.dir/src/output/paf_format.cpp.o make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/taxon_list.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/stage0.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/stage0.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/paf_format.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_array.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/seed_array.cpp make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [100%] Linking CXX executable diamond make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_link_script CMakeFiles/diamond.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -march=native -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/diamond.dir/src/run/main.cpp.o CMakeFiles/diamond.dir/src/basic/config.cpp.o CMakeFiles/diamond.dir/src/util/tinythread.cpp.o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o CMakeFiles/diamond.dir/src/data/queries.cpp.o CMakeFiles/diamond.dir/src/data/reference.cpp.o CMakeFiles/diamond.dir/src/data/seed_histogram.cpp.o CMakeFiles/diamond.dir/src/output/daa_record.cpp.o CMakeFiles/diamond.dir/src/search/search.cpp.o CMakeFiles/diamond.dir/src/util/command_line_parser.cpp.o CMakeFiles/diamond.dir/src/util/seq_file_format.cpp.o CMakeFiles/diamond.dir/src/util/util.cpp.o CMakeFiles/diamond.dir/src/util/Timer.cpp.o CMakeFiles/diamond.dir/src/basic/basic.cpp.o CMakeFiles/diamond.dir/src/basic/hssp.cpp.o CMakeFiles/diamond.dir/src/dp/ungapped_align.cpp.o CMakeFiles/diamond.dir/src/run/tools.cpp.o CMakeFiles/diamond.dir/src/dp/greedy_align.cpp.o CMakeFiles/diamond.dir/src/search/stage2.cpp.o CMakeFiles/diamond.dir/src/output/output_format.cpp.o CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o CMakeFiles/diamond.dir/src/extra/roc.cpp.o CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o CMakeFiles/diamond.dir/src/search/collision.cpp.o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o CMakeFiles/diamond.dir/src/align/align.cpp.o CMakeFiles/diamond.dir/src/search/setup.cpp.o CMakeFiles/diamond.dir/src/extra/opt.cpp.o CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o CMakeFiles/diamond.dir/src/basic/masking.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/swipe.cpp.o CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o CMakeFiles/diamond.dir/src/util/simd.cpp.o CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o CMakeFiles/diamond.dir/src/output/view.cpp.o CMakeFiles/diamond.dir/src/output/output_sink.cpp.o CMakeFiles/diamond.dir/src/output/target_culling.cpp.o CMakeFiles/diamond.dir/src/align/greedy_pipeline.cpp.o CMakeFiles/diamond.dir/src/align/swipe_pipeline.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/banded_swipe.cpp.o CMakeFiles/diamond.dir/src/align/banded_swipe_pipeline.cpp.o CMakeFiles/diamond.dir/src/data/ref_dictionary.cpp.o CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o CMakeFiles/diamond.dir/src/util/io/input_stream_buffer.cpp.o CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o CMakeFiles/diamond.dir/src/search/stage0.cpp.o CMakeFiles/diamond.dir/src/util/memory/memory_pool.cpp.o CMakeFiles/diamond.dir/src/data/seed_array.cpp.o CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -o diamond -lz -lpthread make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[2]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-i686-linux-gnu && make -j4 -Oline install DESTDIR=/<>/diamond-aligner-0.9.22\+dfsg/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -H/<>/diamond-aligner-0.9.22+dfsg -B/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/Makefile2 all make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' cd /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Nothing to be done for 'CMakeFiles/diamond.dir/build'. make[2]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/Makefile2 preinstall make[2]: Nothing to be done for 'preinstall'. make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' Install the project... make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/diamond-aligner-0.9.22+dfsg/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_install # due to a file name conflict diamond is moved out of the way mkdir -p debian/diamond-aligner/usr/lib/debian-med/bin/ mv debian/diamond-aligner/usr/bin/diamond debian/diamond-aligner/usr/lib/debian-med/bin/ make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_installman # due to a file name conflict diamond.1 is moved out of the way mkdir -p debian/diamond-aligner/usr/lib/debian-med/share/man/man1/ mv debian/diamond-aligner/usr/share/man/man1/diamond.1 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/ gzip -9 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/diamond.1 make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_fixperms # strangely the manpage becomes executable ... hmmm chmod -x debian/diamond-aligner/usr/lib/debian-med/share/man/man1/* make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 139 INFO: pkgstriptranslations version 139 pkgstriptranslations: processing diamond-aligner (in debian/diamond-aligner); do_strip: , oemstrip: pkgstriptranslations: processing diamond-aligner-dbgsym (in debian/.debhelper/diamond-aligner/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/diamond-aligner/DEBIAN/control, package diamond-aligner, directory debian/diamond-aligner pkgstripfiles: Running PNG optimization (using 4 cpus) for package diamond-aligner ... pkgstripfiles: No PNG files. dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_0.9.22+dfsg-1_i386.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/diamond-aligner/dbgsym-root/DEBIAN/control, package diamond-aligner-dbgsym, directory debian/.debhelper/diamond-aligner/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package diamond-aligner-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'diamond-aligner-dbgsym' in 'debian/.debhelper/scratch-space/build-diamond-aligner/diamond-aligner-dbgsym_0.9.22+dfsg-1_i386.deb'. Renaming diamond-aligner-dbgsym_0.9.22+dfsg-1_i386.deb to diamond-aligner-dbgsym_0.9.22+dfsg-1_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../diamond-aligner_0.9.22+dfsg-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build diamond-aligner-0.9.22+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180522-2315 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ diamond-aligner_0.9.22+dfsg-1_i386.changes: ------------------------------------------- Format: 1.8 Date: Tue, 22 May 2018 15:54:27 +0200 Source: diamond-aligner Binary: diamond-aligner Architecture: i386 Version: 0.9.22+dfsg-1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: diamond-aligner - accelerated BLAST compatible local sequence aligner Changes: diamond-aligner (0.9.22+dfsg-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: e639612ef6fd9cdf5935672c27427483089b47ab 6588824 diamond-aligner-dbgsym_0.9.22+dfsg-1_i386.ddeb f024a8014d9a72104359f2a04f32ddd30e220524 6488 diamond-aligner_0.9.22+dfsg-1_i386.buildinfo cb49c1ad011fe76ad69515ce1b72d78a2efc4404 571920 diamond-aligner_0.9.22+dfsg-1_i386.deb Checksums-Sha256: 419867822bc19da662ae9de105a63adf5ef9cdd61e985e4b07ba15fcff3f438d 6588824 diamond-aligner-dbgsym_0.9.22+dfsg-1_i386.ddeb e9e0cc504990529cae84fb12b7595c51ce9c530f51c61a44c02b93ad7dc2ad68 6488 diamond-aligner_0.9.22+dfsg-1_i386.buildinfo 5aa3f2d1d5c2922ca259aa14b687ee4f39fa914cd0557cbdaa6ae20a1ccd1951 571920 diamond-aligner_0.9.22+dfsg-1_i386.deb Files: b9b0f5e62291b047e67eed8d7ad4611f 6588824 debug optional diamond-aligner-dbgsym_0.9.22+dfsg-1_i386.ddeb 2cfe9d68f1e71c5d91d08eec6ca77e62 6488 science optional diamond-aligner_0.9.22+dfsg-1_i386.buildinfo 865f2ae684c6e2590f611fa86a3b342b 571920 science optional diamond-aligner_0.9.22+dfsg-1_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ diamond-aligner_0.9.22+dfsg-1_i386.deb -------------------------------------- new debian package, version 2.0. size 571920 bytes: control archive=988 bytes. 861 bytes, 17 lines control 457 bytes, 6 lines md5sums Package: diamond-aligner Version: 0.9.22+dfsg-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1558 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.2), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: https://github.com/bbuchfink/diamond Description: accelerated BLAST compatible local sequence aligner DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. drwxr-xr-x root/root 0 2018-05-22 13:54 ./ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/bin/ lrwxrwxrwx root/root 0 2018-05-22 13:54 ./usr/bin/diamond-aligner -> ../lib/debian-med/bin/diamond drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 1565528 2018-05-22 13:54 ./usr/lib/debian-med/bin/diamond drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/lib/debian-med/share/man/man1/ -rw-r--r-- root/root 2421 2018-05-22 13:54 ./usr/lib/debian-med/share/man/man1/diamond.1.gz drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/share/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/share/doc/diamond-aligner/ -rw-r--r-- root/root 996 2018-05-22 13:54 ./usr/share/doc/diamond-aligner/README.Debian -rw-r--r-- root/root 3825 2018-05-11 15:19 ./usr/share/doc/diamond-aligner/README.rst -rw-r--r-- root/root 540 2018-05-22 13:54 ./usr/share/doc/diamond-aligner/changelog.Debian.gz -rw-r--r-- root/root 2378 2018-05-22 13:54 ./usr/share/doc/diamond-aligner/copyright drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-22 13:54 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2018-05-22 13:54 ./usr/share/man/man1/diamond-aligner.1.gz -> ../../../lib/debian-med/share/man/man1/diamond.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 74724 Build-Time: 121 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 17 Job: diamond-aligner_0.9.22+dfsg-1.dsc Machine Architecture: amd64 Package: diamond-aligner Package-Time: 139 Source-Version: 0.9.22+dfsg-1 Space: 74724 Status: successful Version: 0.9.22+dfsg-1 -------------------------------------------------------------------------------- Finished at 20180522-2315 Build needed 00:02:19, 74724k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14923087 Scanning for processes to kill in build PACKAGEBUILD-14923087 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14923087 Stopping target for build PACKAGEBUILD-14923087 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14923087 Removing build PACKAGEBUILD-14923087