https://launchpad.net/ubuntu/+source/diamond-aligner/0.9.22+dfsg-2/+build/15291666 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-018 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Aug 23:35:28 ntpdate[1866]: adjust time server 10.211.37.1 offset 0.000777 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15291666 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-15291666 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15291666 Starting target for build PACKAGEBUILD-15291666 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15291666 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15291666 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15291666 Updating target for build PACKAGEBUILD-15291666 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1013 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8737 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5059 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [68.4 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [38.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [202 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [128 kB] Fetched 16.2 MB in 6s (2585 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential bzip2 cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libidn11 libidn2-0 libisl19 libitm1 libkmod2 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libunistring2 libusb-0.1-4 libuuid1 linux-libc-dev make mount multiarch-support ncurses-base ncurses-bin openssl patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 122 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 95.6 MB of archives. After this operation, 116 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libc6-dev i386 2.27-5ubuntu1 [2254 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libc-dev-bin i386 2.27-5ubuntu1 [71.8 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.17.0-8.9 [1015 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 libquadmath0 i386 8.2.0-4ubuntu1 [208 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libitm1 i386 8.2.0-4ubuntu1 [30.8 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8-base i386 8.2.0-4ubuntu1 [18.3 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc1 i386 1:8.2.0-4ubuntu1 [48.1 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpx2 i386 8.2.0-4ubuntu1 [13.0 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 libcc1-0 i386 8.2.0-4ubuntu1 [41.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libatomic1 i386 8.2.0-4ubuntu1 [9624 B] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libgomp1 i386 8.2.0-4ubuntu1 [80.7 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++6 i386 8.2.0-4ubuntu1 [430 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libc6 i386 2.27-5ubuntu1 [2551 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu6 [60.5 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-4ubuntu1 [84.6 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 debianutils i386 4.8.6 [86.1 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdutils i386 1:2.32-0.1ubuntu1 [62.7 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 tar i386 1.30+dfsg-2 [265 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 dpkg i386 1.19.0.5ubuntu4 [1156 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.3-1 [186 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.3-1 [433 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 findutils i386 4.6.0+git+20180808-2 [307 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-4ubuntu1 [166 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-modules-5.26 all 5.26.2-7 [2764 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libperl5.26 i386 5.26.2-7 [3177 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl i386 5.26.2-7 [202 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-base i386 5.26.2-7 [1493 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 bzip2 i386 1.0.6-9 [34.4 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libbz2-1.0 i386 1.0.6-9 [32.9 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libdb5.3 i386 5.3.28+dfsg1-0.1 [737 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 sed i386 4.5-1 [187 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libuuid1 i386 2.32-0.1ubuntu1 [20.6 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libblkid1 i386 2.32-0.1ubuntu1 [143 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libfdisk1 i386 2.32-0.1ubuntu1 [186 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-4ubuntu1 [141 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libpcre3 i386 2:8.39-11 [229 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libselinux1 i386 2.8-1build1 [73.2 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libmount1 i386 2.32-0.1ubuntu1 [152 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libsmartcols1 i386 2.32-0.1ubuntu1 [94.0 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 fdisk i386 2.32-0.1ubuntu1 [118 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 util-linux i386 2.32-0.1ubuntu1 [943 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 init-system-helpers all 1.53 [38.2 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libc-bin i386 2.27-5ubuntu1 [586 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 liblz4-1 i386 1.8.2-1ubuntu1 [69.2 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libudev1 i386 239-7ubuntu3 [60.5 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha3 [889 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 debconf all 1.5.69 [121 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 adduser all 3.117ubuntu1 [163 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.32-1 [60.9 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcrypt20 i386 1.8.3-1ubuntu1 [401 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgv i386 2.2.8-1ubuntu1 [217 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.13-2 [185 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 libunistring2 i386 0.9.10-1ubuntu1 [380 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 libidn2-0 i386 2.0.4-2.2 [49.0 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 libtasn1-6 i386 4.13-3 [38.8 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libgnutls30 i386 3.5.19-1ubuntu1 [657 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libseccomp2 i386 2.3.3-3ubuntu1 [35.6 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha3 [1202 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libapparmor1 i386 2.12-4ubuntu7 [32.0 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit1 i386 1:2.8.3-1ubuntu2 [40.1 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-1 i386 0~20171227-0.1 [25.2 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 libcryptsetup12 i386 2:2.0.3-6ubuntu1 [156 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 libkmod2 i386 25-1ubuntu1 [48.3 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 mount i386 2.32-0.1ubuntu1 [110 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-4ubuntu1 [108 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps7 i386 2:3.3.15-2ubuntu1 [33.6 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.15-2ubuntu1 [230 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd i386 239-7ubuntu3 [3069 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsystemd0 i386 239-7ubuntu3 [231 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 init i386 1.53 [6356 B] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd-sysv i386 239-7ubuntu3 [14.1 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.3-1 [9492 B] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 libsepol1 i386 2.8-1 [276 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage-common all 2.8-1build1 [7000 B] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage1 i386 2.8-1build1 [94.3 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.3-1 [11.6 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/universe i386 libncurses5 i386 6.1+20180210-4ubuntu1 [101 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-4ubuntu1 [128 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-4ubuntu1 [79.7 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main i386 libidn11 i386 1.33-2.2ubuntu1 [46.6 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main i386 libsqlite3-0 i386 3.24.0-1 [541 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.1 i386 1.1.0g-2ubuntu5 [1123 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main i386 openssl i386 1.1.0g-2ubuntu5 [542 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 libpng16-16 i386 1.6.34-2 [184 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 multiarch-support i386 2.27-5ubuntu1 [6916 B] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.31.1-3ubuntu2 [194 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.31.1-3ubuntu2 [3396 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.31.1-3ubuntu2 [1986 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.31.1-3ubuntu2 [518 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main i386 libisl19 i386 0.20-2 [649 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-8 i386 8.2.0-4ubuntu1 [7537 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:8.2.0-1ubuntu1 [27.6 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan5 i386 8.2.0-4ubuntu1 [375 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan1 i386 8.2.0-4ubuntu1 [138 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-8-dev i386 8.2.0-4ubuntu1 [2299 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-8 i386 8.2.0-4ubuntu1 [8321 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:8.2.0-1ubuntu1 [5268 B] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-8-dev i386 8.2.0-4ubuntu1 [1580 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 g++-8 i386 8.2.0-4ubuntu1 [8439 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:8.2.0-1ubuntu1 [1616 B] Get:111 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 make i386 4.2.1-1.2 [169 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 dpkg-dev all 1.19.0.5ubuntu4 [607 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libdpkg-perl all 1.19.0.5ubuntu4 [211 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 patch i386 2.7.6-3 [118 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:116 http://ftpmaster.internal/ubuntu cosmic/main i386 libasan4 i386 7.3.0-28ubuntu1 [361 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 libubsan0 i386 7.3.0-28ubuntu1 [141 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/main i386 libcilkrts5 i386 7.3.0-28ubuntu1 [47.4 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/universe i386 g++-7 i386 7.3.0-28ubuntu1 [7818 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7 i386 7.3.0-28ubuntu1 [7701 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/main i386 libstdc++-7-dev i386 7.3.0-28ubuntu1 [1507 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcc-7-dev i386 7.3.0-28ubuntu1 [2400 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp-7 i386 7.3.0-28ubuntu1 [6967 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc-7-base i386 7.3.0-28ubuntu1 [19.0 kB] Get:125 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.3-1 [2704 B] Get:126 http://ftpmaster.internal/ubuntu cosmic/main i386 pinentry-curses i386 1.1.0-1build2 [37.8 kB] Get:127 http://ftpmaster.internal/ubuntu cosmic/main i386 libnpth0 i386 1.6-1 [8032 B] Get:128 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg i386 2.2.8-1ubuntu1 [511 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgconf i386 2.2.8-1ubuntu1 [130 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg-agent i386 2.2.8-1ubuntu1 [247 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic/universe i386 libargon2-0 i386 0~20171227-0.1 [4532 B] Get:132 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.3-1 [2700 B] Get:133 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main i386 pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.6 MB in 7s (13.1 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.27-5ubuntu1_i386.deb ... Unpacking libc6-dev:i386 (2.27-5ubuntu1) over (2.27-3ubuntu1) ... Preparing to unpack .../1-libc-dev-bin_2.27-5ubuntu1_i386.deb ... Unpacking libc-dev-bin (2.27-5ubuntu1) over (2.27-3ubuntu1) ... Preparing to unpack .../2-linux-libc-dev_4.17.0-8.9_i386.deb ... Unpacking linux-libc-dev:i386 (4.17.0-8.9) over (4.15.0-20.21) ... Preparing to unpack .../3-libquadmath0_8.2.0-4ubuntu1_i386.deb ... Unpacking libquadmath0:i386 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../4-libitm1_8.2.0-4ubuntu1_i386.deb ... Unpacking libitm1:i386 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../5-gcc-8-base_8.2.0-4ubuntu1_i386.deb ... Unpacking gcc-8-base:i386 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:i386 (8.2.0-4ubuntu1) ... (Reading database ... 12644 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-4ubuntu1_i386.deb ... 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Unpacking libargon2-0 (0~20171227-0.1) over (0~20161029-1.1) ... Preparing to unpack .../46-libcomerr2_1.44.3-1_i386.deb ... Unpacking libcomerr2:i386 (1.44.3-1) over (1.44.1-1) ... Preparing to unpack .../47-libusb-0.1-4_2%3a0.1.12-32_i386.deb ... Unpacking libusb-0.1-4:i386 (2:0.1.12-32) over (2:0.1.12-31) ... Preparing to unpack .../48-pkgbinarymangler_141_all.deb ... Unpacking pkgbinarymangler (141) over (138) ... Setting up libquadmath0:i386 (8.2.0-4ubuntu1) ... Setting up libnpth0:i386 (1.6-1) ... Setting up libncurses5:i386 (6.1+20180210-4ubuntu1) ... Setting up libgomp1:i386 (8.2.0-4ubuntu1) ... Setting up libatomic1:i386 (8.2.0-4ubuntu1) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:i386 (8.2.0-4ubuntu1) ... Setting up make (4.2.1-1.2) ... Setting up pkgbinarymangler (141) ... Setting up e2fslibs:i386 (1.44.3-1) ... Setting up libpng16-16:i386 (1.6.34-2) ... Setting up libncursesw5:i386 (6.1+20180210-4ubuntu1) ... Setting up libreadline7:i386 (7.0-5) ... Setting up multiarch-support (2.27-5ubuntu1) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Aug 21 23:36:55 UTC 2018. Universal Time is now: Tue Aug 21 23:36:55 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (239-7ubuntu3) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:i386 (4.17.0-8.9) ... Setting up perl-modules-5.26 (5.26.2-7) ... Setting up bzip2 (1.0.6-9) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:i386 (7.3.0-28ubuntu1) ... Setting up binutils-common:i386 (2.31.1-3ubuntu2) ... Setting up libmpx2:i386 (8.2.0-4ubuntu1) ... Setting up patch (2.7.6-3) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... Setting up libperl5.26:i386 (5.26.2-7) ... Setting up libssl1.1:i386 (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:i386 (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libc-dev-bin (2.27-5ubuntu1) ... Setting up libcomerr2:i386 (1.44.3-1) ... Setting up libc6-dev:i386 (2.27-5ubuntu1) ... Setting up libslang2:i386 (2.3.2-1ubuntu1) ... Setting up libasan5:i386 (8.2.0-4ubuntu1) ... Setting up libusb-0.1-4:i386 (2:0.1.12-32) ... Setting up libitm1:i386 (8.2.0-4ubuntu1) ... Setting up libidn11:i386 (1.33-2.2ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libubsan1:i386 (8.2.0-4ubuntu1) ... Setting up libisl19:i386 (0.20-2) ... Setting up cpp-8 (8.2.0-4ubuntu1) ... Setting up cpp (4:8.2.0-1ubuntu1) ... Setting up libasan4:i386 (7.3.0-28ubuntu1) ... Setting up libbinutils:i386 (2.31.1-3ubuntu2) ... Setting up libcilkrts5:i386 (7.3.0-28ubuntu1) ... Setting up init (1.53) ... Setting up libubsan0:i386 (7.3.0-28ubuntu1) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:i386 (7.3.0-28ubuntu1) ... Setting up cpp-7 (7.3.0-28ubuntu1) ... Setting up libstdc++-7-dev:i386 (7.3.0-28ubuntu1) ... Setting up perl (5.26.2-7) ... Setting up binutils-i686-linux-gnu (2.31.1-3ubuntu2) ... Setting up libgcc-8-dev:i386 (8.2.0-4ubuntu1) ... Setting up binutils (2.31.1-3ubuntu2) ... Setting up libstdc++-8-dev:i386 (8.2.0-4ubuntu1) ... Setting up gcc-7 (7.3.0-28ubuntu1) ... Setting up g++-7 (7.3.0-28ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu4) ... Setting up gcc-8 (8.2.0-4ubuntu1) ... Setting up g++-8 (8.2.0-4ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu4) ... Setting up gcc (4:8.2.0-1ubuntu1) ... Setting up g++ (4:8.2.0-1ubuntu1) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15291666 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-15291666 --arch=i386 --dist=cosmic-proposed --nolog diamond-aligner_0.9.22+dfsg-2.dsc Initiating build PACKAGEBUILD-15291666 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-018.buildd +==============================================================================+ | diamond-aligner 0.9.22+dfsg-2 (i386) 21 Aug 2018 23:36 | +==============================================================================+ Package: diamond-aligner Version: 0.9.22+dfsg-2 Source Version: 0.9.22+dfsg-2 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/diamond-aligner-Ye4xQg/diamond-aligner-0.9.22+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/diamond-aligner-Ye4xQg' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15291666/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- diamond-aligner_0.9.22+dfsg-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-C1Pb_M/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-C1Pb_M/apt_archive ./ InRelease Get:2 copy:/<>/resolver-C1Pb_M/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-C1Pb_M/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-C1Pb_M/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-C1Pb_M/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-C1Pb_M/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 49710d 6h 28min 15s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13721 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev Filtered Build-Depends: debhelper (>= 11~), cmake, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-diamond-aligner-dummy' in '/<>/resolver-Hpuko5/apt_archive/sbuild-build-depends-diamond-aligner-dummy.deb'. Ign:1 copy:/<>/resolver-Hpuko5/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Hpuko5/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Hpuko5/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Hpuko5/apt_archive ./ Sources [230 B] Get:5 copy:/<>/resolver-Hpuko5/apt_archive ./ Packages [546 B] Fetched 2895 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install diamond-aligner build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libcroco3 libcurl4 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libcroco3 libcurl4 libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxml2 m4 man-db po-debconf sbuild-build-depends-diamond-aligner-dummy zlib1g-dev 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 25.1 MB of archives. After this operation, 100 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Hpuko5/apt_archive ./ sbuild-build-depends-diamond-aligner-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.4-2 [1039 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.34-2 [197 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.34-2 [78.8 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.34-2 [22.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libelf1 i386 0.170-0.5 [50.7 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libexpat1 i386 2.2.6-1 [84.8 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libglib2.0-0 i386 2.57.2-2 [1239 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libxml2 i386 2.9.4+dfsg1-7build1 [699 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-7 [51.4 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5support0 i386 1.16-2ubuntu1 [32.5 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libk5crypto3 i386 1.16-2ubuntu1 [89.9 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libkeyutils1 i386 1.5.9-9.3 [9896 B] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-3 i386 1.16-2ubuntu1 [303 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi-krb5-2 i386 1.16-2ubuntu1 [132 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libpsl5 i386 0.20.2-1 [49.9 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-7 [412 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake-data all 3.12.1-1 [1419 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 liblzo2-2 i386 2.10-0.1 [52.8 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive13 i386 3.2.2-4.2 [325 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libroken18-heimdal i386 7.5.0+dfsg-2 [44.8 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-2 [183 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-2 [32.2 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-2 [92.6 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libwind0-heimdal i386 7.5.0+dfsg-2 [48.4 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-2 [118 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-26-heimdal i386 7.5.0+dfsg-2 [231 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimntlm0-heimdal i386 7.5.0+dfsg-2 [16.3 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi3-heimdal i386 7.5.0+dfsg-2 [106 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-modules-db i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [15.6 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-2 i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [52.8 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-2.4-2 i386 2.4.46+dfsg-5ubuntu1 [167 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libnghttp2-14 i386 1.32.0-1 [83.0 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [58.3 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcurl4 i386 7.61.0-1 [240 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libjsoncpp1 i386 1.7.4-3 [82.7 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 librhash0 i386 1.3.6-2 [90.7 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuv1 i386 1.22.0-3 [73.5 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake i386 3.12.1-1 [3654 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libtool all 2.4.6-2.1build1 [196 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 19 [16.1 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libarchive-zip-perl all 1.62-1 [84.7 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 dwz i386 0.12-2 [80.4 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-7 [905 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.3.2ubuntu1 [883 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.1 MB in 1s (23.3 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 13721 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.4-2_i386.deb ... Unpacking man-db (2.8.4-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.34-2_i386.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:i386. 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Setting up libnghttp2-14:i386 (1.32.0-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu1) ... Setting up libuv1:i386 (1.22.0-3) ... Setting up libpsl5:i386 (0.20.2-1) ... Setting up libelf1:i386 (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:i386 (2.57.2-2) ... No schema files found: doing nothing. Setting up libsasl2-modules-db:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:i386 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up gettext-base (0.19.8.1-7) ... Setting up cmake-data (3.12.1-1) ... Setting up libpipeline1:i386 (1.5.0-1) ... Setting up libroken18-heimdal:i386 (7.5.0+dfsg-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.9.1-1) ... Setting up libkrb5support0:i386 (1.16-2ubuntu1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:i386 (1:5.34-2) ... Setting up librhash0:i386 (1.3.6-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libkeyutils1:i386 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-7) ... Setting up liblzo2-2:i386 (2.10-0.1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up libk5crypto3:i386 (1.16-2ubuntu1) ... Setting up libwind0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-7) ... Setting up libarchive13:i386 (3.2.2-4.2) ... Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:i386 (1.16-2ubuntu1) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libtool (2.4.6-2.1build1) ... Setting up po-debconf (1.0.20) ... Setting up libgssapi-krb5-2:i386 (1.16-2ubuntu1) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libldap-2.4-2:i386 (2.4.46+dfsg-5ubuntu1) ... Setting up libcurl4:i386 (7.61.0-1) ... Setting up cmake (3.12.1-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up sbuild-build-depends-diamond-aligner-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (i686) Toolchain package versions: binutils_2.31.1-3ubuntu2 dpkg-dev_1.19.0.5ubuntu4 g++-7_7.3.0-28ubuntu1 g++-8_8.2.0-4ubuntu1 gcc-7_7.3.0-28ubuntu1 gcc-8_8.2.0-4ubuntu1 libc6-dev_2.27-5ubuntu1 libstdc++-7-dev_7.3.0-28ubuntu1 libstdc++-8-dev_8.2.0-4ubuntu1 libstdc++6_8.2.0-4ubuntu1 linux-libc-dev_4.17.0-8.9 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha3 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1ubuntu6 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31.1-3ubuntu2 binutils-common_2.31.1-3ubuntu2 binutils-i686-linux-gnu_2.31.1-3ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 cmake_3.12.1-1 cmake-data_3.12.1-1 coreutils_8.28-1ubuntu1 cpp_4:8.2.0-1ubuntu1 cpp-7_7.3.0-28ubuntu1 cpp-8_8.2.0-4ubuntu1 dash_0.5.8-2.10 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu4 dpkg-dev_1.19.0.5ubuntu4 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.34-2 findutils_4.6.0+git+20180808-2 g++_4:8.2.0-1ubuntu1 g++-7_7.3.0-28ubuntu1 g++-8_8.2.0-4ubuntu1 gcc_4:8.2.0-1ubuntu1 gcc-7_7.3.0-28ubuntu1 gcc-7-base_7.3.0-28ubuntu1 gcc-8_8.2.0-4ubuntu1 gcc-8-base_8.2.0-4ubuntu1 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.53 init-system-helpers_1.53 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 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libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-28ubuntu1 libgcc-8-dev_8.2.0-4ubuntu1 libgcc1_1:8.2.0-4ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.57.2-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1ubuntu1 libgomp1_8.2.0-4ubuntu1 libgpg-error0_1.32-1 libgssapi-krb5-2_1.16-2ubuntu1 libgssapi3-heimdal_7.5.0+dfsg-2 libhcrypto4-heimdal_7.5.0+dfsg-2 libheimbase1-heimdal_7.5.0+dfsg-2 libheimntlm0-heimdal_7.5.0+dfsg-2 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-2 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.4-2.2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-4ubuntu1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2ubuntu1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-2 libkrb5-3_1.16-2ubuntu1 libkrb5support0_1.16-2ubuntu1 libldap-2.4-2_2.4.46+dfsg-5ubuntu1 libldap-common_2.4.46+dfsg-5ubuntu1 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libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-28ubuntu1 libstdc++-8-dev_8.2.0-4ubuntu1 libstdc++6_8.2.0-4ubuntu1 libsystemd0_239-7ubuntu3 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libubsan0_7.3.0-28ubuntu1 libubsan1_8.2.0-4ubuntu1 libudev1_239-7ubuntu3 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libuv1_1.22.0-3 libwind0-heimdal_7.5.0+dfsg-2 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-8.9 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.2 man-db_2.8.4-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-5ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1build2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-diamond-aligner-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7ubuntu3 systemd-sysv_239-7ubuntu3 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Aug 19 04:44:36 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./diamond-aligner_0.9.22+dfsg-2.dsc dpkg-source: info: extracting diamond-aligner in diamond-aligner-0.9.22+dfsg dpkg-source: info: unpacking diamond-aligner_0.9.22+dfsg.orig.tar.xz dpkg-source: info: unpacking diamond-aligner_0.9.22+dfsg-2.debian.tar.xz dpkg-source: info: applying avoid_unwanted_optimisation.patch dpkg-source: info: applying no_march_native.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15291666 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15291666 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15291666 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 0.9.22+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build diamond-aligner-0.9.22+dfsg dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-i686-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu dh_auto_build -a cd obj-i686-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -H/<>/diamond-aligner-0.9.22+dfsg -B/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' cd /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake --color= Scanning dependencies of target diamond make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [ 1%] Building CXX object CMakeFiles/diamond.dir/src/basic/config.cpp.o [ 2%] Building CXX object CMakeFiles/diamond.dir/src/run/main.cpp.o [ 3%] Building CXX object CMakeFiles/diamond.dir/src/util/tinythread.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/run/main.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/run/main.cpp /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/config.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/config.cpp [ 4%] Building CXX object CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/tinythread.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/tinythread.cpp /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/score_matrix.cpp [ 5%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/blast_filter.cpp [ 7%] Building CXX object CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/blast_seg.cpp [ 8%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum45.c [ 9%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum50.c [ 10%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum62.c [ 11%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum80.c [ 13%] Building C object CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_blosum90.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_blosum90.c [ 14%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam30.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam30.c [ 15%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam70.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam70.c [ 16%] Building C object CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o /usr/bin/cc -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/blast/sm_pam250.c.o -c /<>/diamond-aligner-0.9.22+dfsg/src/blast/sm_pam250.c [ 17%] Building CXX object CMakeFiles/diamond.dir/src/data/queries.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 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CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/blast_tab_format.cpp [ 41%] Building CXX object CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/padded_banded_sw.cpp [ 42%] Building CXX object CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes 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-Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/collision.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/collision.cpp [ 51%] Building CXX object CMakeFiles/diamond.dir/src/output/sam_format.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/sam_format.cpp [ 52%] Building CXX object CMakeFiles/diamond.dir/src/align/align.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/align.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/align/align.cpp In file included from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:27, from /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21: /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h: In instantiation of ‘Partitioned_histogram::Partitioned_histogram(const Sequence_set&, bool, const _filter*) [with _filter = Seed_set]’: /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:139:71: required from here /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h:96:10: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct Array’; use assignment or value-initialization instead [-Wclass-memaccess] memset(data_[s].data(), 0, (p_.size() - 1)*sizeof(unsigned)*Const::seedp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/exceptions.h:24, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/stream_entity.h:24, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/serializer.h:26, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:25, from /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21: /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/../util.h:218:8: note: ‘struct Array’ declared here struct Array ^~~~~ In file included from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:27, from /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21: /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h: In instantiation of ‘Partitioned_histogram::Partitioned_histogram(const Sequence_set&, bool, const _filter*) [with _filter = Hashed_seed_set]’: /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:141:77: required from here /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h:96:10: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct Array’; use assignment or value-initialization instead [-Wclass-memaccess] memset(data_[s].data(), 0, (p_.size() - 1)*sizeof(unsigned)*Const::seedp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/exceptions.h:24, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/stream_entity.h:24, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/serializer.h:26, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:25, from /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21: /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/../util.h:218:8: note: ‘struct Array’ declared here struct Array ^~~~~ In file included from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:27, from /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21: /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h: In instantiation of ‘Partitioned_histogram::Partitioned_histogram(const Sequence_set&, bool, const _filter*) [with _filter = No_filter]’: /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:143:70: required from here /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../data/seed_histogram.h:96:10: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct Array’; use assignment or value-initialization instead [-Wclass-memaccess] memset(data_[s].data(), 0, (p_.size() - 1)*sizeof(unsigned)*Const::seedp); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/exceptions.h:24, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/stream_entity.h:24, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/serializer.h:26, from /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/reference.h:25, from /<>/diamond-aligner-0.9.22+dfsg/src/run/double_indexed.cpp:21: /<>/diamond-aligner-0.9.22+dfsg/src/run/../data/../util/io/../util.h:218:8: note: ‘struct Array’ declared here struct Array ^~~~~ [ 53%] Building CXX object CMakeFiles/diamond.dir/src/search/setup.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/setup.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/setup.cpp [ 54%] Building CXX object CMakeFiles/diamond.dir/src/extra/opt.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/extra/opt.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/extra/opt.cpp [ 55%] Building CXX object CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/diag_scores.cpp [ 57%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/taxonomy.cpp [ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o -c /<>/diamond-aligner-0.9.22+dfsg/src/lib/tantan/tantan.cc [ 59%] Building CXX object CMakeFiles/diamond.dir/src/basic/masking.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/basic/masking.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/basic/masking.cpp [ 60%] Building CXX object CMakeFiles/diamond.dir/src/dp/swipe/swipe.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/swipe/swipe.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/swipe/swipe.cpp [ 61%] Building CXX object CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/banded_sw.cpp [ 63%] Building CXX object CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/sorted_list.cpp [ 64%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_set.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/seed_set.cpp [ 65%] Building CXX object CMakeFiles/diamond.dir/src/util/simd.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/simd.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/simd.cpp [ 66%] Building CXX object CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/taxon_format.cpp [ 67%] Building CXX object CMakeFiles/diamond.dir/src/output/view.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/view.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/view.cpp [ 69%] Building CXX object CMakeFiles/diamond.dir/src/output/output_sink.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/output_sink.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/output_sink.cpp [ 70%] Building CXX object CMakeFiles/diamond.dir/src/output/target_culling.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/target_culling.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/target_culling.cpp [ 71%] Building CXX object 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/<>/diamond-aligner-0.9.22+dfsg/src/align/swipe_pipeline.cpp [ 73%] Building CXX object CMakeFiles/diamond.dir/src/dp/swipe/banded_3frame_swipe.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/swipe/banded_3frame_swipe.cpp [ 75%] Building CXX object CMakeFiles/diamond.dir/src/dp/swipe/banded_swipe.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/dp/swipe/banded_swipe.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/dp/swipe/banded_swipe.cpp [ 76%] Building CXX object CMakeFiles/diamond.dir/src/align/banded_swipe_pipeline.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/align/banded_swipe_pipeline.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/align/banded_swipe_pipeline.cpp [ 77%] Building CXX object CMakeFiles/diamond.dir/src/data/ref_dictionary.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/input_stream_buffer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/input_stream_buffer.cpp [ 85%] Building CXX object CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/output_file.cpp [ 86%] Building CXX object CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/output_stream_buffer.cpp [ 88%] Building CXX object CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/serializer.cpp [ 89%] Building CXX object CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/temp_file.cpp [ 90%] Building CXX object CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/io/text_input_file.cpp [ 91%] Building CXX object CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/taxon_list.cpp [ 92%] Building CXX object CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/taxonomy_nodes.cpp [ 94%] Building CXX object CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/algo/MurmurHash3.cpp [ 95%] Building CXX object CMakeFiles/diamond.dir/src/search/stage0.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/search/stage0.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/search/stage0.cpp [ 96%] Building CXX object CMakeFiles/diamond.dir/src/util/memory/memory_pool.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/util/memory/memory_pool.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/util/memory/memory_pool.cpp [ 97%] Building CXX object CMakeFiles/diamond.dir/src/data/seed_array.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/data/seed_array.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/data/seed_array.cpp In file included from /<>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/hash_join.h:26, from /<>/diamond-aligner-0.9.22+dfsg/src/search/stage0.cpp:20: /<>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/../data_structures/hash_table.h: In instantiation of ‘HashTable<_K, _V, _HashFunction>::HashTable(size_t, const _HashFunction&) [with _K = unsigned int; _V = RelPtr; _HashFunction = ExtractBits; size_t = unsigned int]’: /<>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/hash_join.h:52:8: required from ‘void hash_table_join(const Relation<_t>&, const Relation<_t>&, unsigned int, JoinResult<_t>&) [with _t = SeedArray::Entry]’ /<>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/hash_join.h:175:19: required from ‘void hash_join(const Relation<_t>&, const Relation<_t>&, JoinResult<_t>&, MemoryPool&, unsigned int, unsigned int) [with _t = SeedArray::Entry]’ /<>/diamond-aligner-0.9.22+dfsg/src/search/stage0.cpp:39:6: required from here /<>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/../data_structures/hash_table.h:42:9: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘struct HashTable::Entry’; use assignment or value-initialization instead [-Wclass-memaccess] memset(table, 0, size_ * sizeof(Entry)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/diamond-aligner-0.9.22+dfsg/src/search/../util/algo/../data_structures/hash_table.h:28:9: note: ‘struct HashTable::Entry’ declared here struct Entry : public _V ^~~~~ [ 98%] Building CXX object CMakeFiles/diamond.dir/src/output/paf_format.cpp.o /usr/bin/c++ -I/<>/diamond-aligner-0.9.22+dfsg/src -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -o CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -c /<>/diamond-aligner-0.9.22+dfsg/src/output/paf_format.cpp [100%] Linking CXX executable diamond /usr/bin/cmake -E cmake_link_script CMakeFiles/diamond.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/diamond-aligner-0.9.22+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-uninitialized -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unused-variable -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/diamond.dir/src/run/main.cpp.o CMakeFiles/diamond.dir/src/basic/config.cpp.o CMakeFiles/diamond.dir/src/util/tinythread.cpp.o CMakeFiles/diamond.dir/src/basic/score_matrix.cpp.o CMakeFiles/diamond.dir/src/blast/blast_filter.cpp.o CMakeFiles/diamond.dir/src/blast/blast_seg.cpp.o CMakeFiles/diamond.dir/src/blast/sm_blosum45.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum50.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum62.c.o CMakeFiles/diamond.dir/src/blast/sm_blosum80.c.o 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CMakeFiles/diamond.dir/src/output/join_blocks.cpp.o CMakeFiles/diamond.dir/src/data/frequent_seeds.cpp.o CMakeFiles/diamond.dir/src/align/query_mapper.cpp.o CMakeFiles/diamond.dir/src/output/blast_tab_format.cpp.o CMakeFiles/diamond.dir/src/dp/padded_banded_sw.cpp.o CMakeFiles/diamond.dir/src/dp/needleman_wunsch.cpp.o CMakeFiles/diamond.dir/src/output/blast_pairwise_format.cpp.o CMakeFiles/diamond.dir/src/extra/roc.cpp.o CMakeFiles/diamond.dir/src/dp/comp_based_stats.cpp.o CMakeFiles/diamond.dir/src/extra/model_sim.cpp.o CMakeFiles/diamond.dir/src/run/double_indexed.cpp.o CMakeFiles/diamond.dir/src/search/collision.cpp.o CMakeFiles/diamond.dir/src/output/sam_format.cpp.o CMakeFiles/diamond.dir/src/align/align.cpp.o CMakeFiles/diamond.dir/src/search/setup.cpp.o CMakeFiles/diamond.dir/src/extra/opt.cpp.o CMakeFiles/diamond.dir/src/dp/diag_scores.cpp.o CMakeFiles/diamond.dir/src/data/taxonomy.cpp.o CMakeFiles/diamond.dir/src/lib/tantan/tantan.cc.o CMakeFiles/diamond.dir/src/basic/masking.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/swipe.cpp.o CMakeFiles/diamond.dir/src/dp/banded_sw.cpp.o CMakeFiles/diamond.dir/src/data/sorted_list.cpp.o CMakeFiles/diamond.dir/src/data/seed_set.cpp.o CMakeFiles/diamond.dir/src/util/simd.cpp.o CMakeFiles/diamond.dir/src/output/taxon_format.cpp.o CMakeFiles/diamond.dir/src/output/view.cpp.o CMakeFiles/diamond.dir/src/output/output_sink.cpp.o CMakeFiles/diamond.dir/src/output/target_culling.cpp.o CMakeFiles/diamond.dir/src/align/greedy_pipeline.cpp.o CMakeFiles/diamond.dir/src/align/swipe_pipeline.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/diamond.dir/src/dp/swipe/banded_swipe.cpp.o CMakeFiles/diamond.dir/src/align/banded_swipe_pipeline.cpp.o CMakeFiles/diamond.dir/src/data/ref_dictionary.cpp.o CMakeFiles/diamond.dir/src/util/io/compressed_stream.cpp.o CMakeFiles/diamond.dir/src/util/io/deserializer.cpp.o CMakeFiles/diamond.dir/src/util/io/file_sink.cpp.o CMakeFiles/diamond.dir/src/util/io/file_source.cpp.o CMakeFiles/diamond.dir/src/util/io/input_file.cpp.o CMakeFiles/diamond.dir/src/util/io/input_stream_buffer.cpp.o CMakeFiles/diamond.dir/src/util/io/output_file.cpp.o CMakeFiles/diamond.dir/src/util/io/output_stream_buffer.cpp.o CMakeFiles/diamond.dir/src/util/io/serializer.cpp.o CMakeFiles/diamond.dir/src/util/io/temp_file.cpp.o CMakeFiles/diamond.dir/src/util/io/text_input_file.cpp.o CMakeFiles/diamond.dir/src/data/taxon_list.cpp.o CMakeFiles/diamond.dir/src/data/taxonomy_nodes.cpp.o CMakeFiles/diamond.dir/src/util/algo/MurmurHash3.cpp.o CMakeFiles/diamond.dir/src/search/stage0.cpp.o CMakeFiles/diamond.dir/src/util/memory/memory_pool.cpp.o CMakeFiles/diamond.dir/src/data/seed_array.cpp.o CMakeFiles/diamond.dir/src/output/paf_format.cpp.o -o diamond -lz -lpthread make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-i686-linux-gnu && make -j4 install DESTDIR=/<>/diamond-aligner-0.9.22\+dfsg/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -H/<>/diamond-aligner-0.9.22+dfsg -B/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/depend make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' cd /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles/diamond.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/diamond.dir/build.make CMakeFiles/diamond.dir/build make[3]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/diamond.dir/build'. make[3]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' [100%] Built target diamond make[2]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/diamond-aligner-0.9.22+dfsg/debian/diamond-aligner/usr/bin/diamond make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_install # due to a file name conflict diamond is moved out of the way mkdir -p debian/diamond-aligner/usr/lib/debian-med/bin/ mv debian/diamond-aligner/usr/bin/diamond debian/diamond-aligner/usr/lib/debian-med/bin/ make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_installman # due to a file name conflict diamond.1 is moved out of the way mkdir -p debian/diamond-aligner/usr/lib/debian-med/share/man/man1/ mv debian/diamond-aligner/usr/share/man/man1/diamond.1 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/ gzip -9 debian/diamond-aligner/usr/lib/debian-med/share/man/man1/diamond.1 make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/<>/diamond-aligner-0.9.22+dfsg' dh_fixperms # strangely the manpage becomes executable ... hmmm chmod -x debian/diamond-aligner/usr/lib/debian-med/share/man/man1/* make[1]: Leaving directory '/<>/diamond-aligner-0.9.22+dfsg' dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing diamond-aligner-dbgsym (in debian/.debhelper/diamond-aligner/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing diamond-aligner (in debian/diamond-aligner); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/diamond-aligner/dbgsym-root/DEBIAN/control, package diamond-aligner-dbgsym, directory debian/.debhelper/diamond-aligner/dbgsym-root dpkg-deb: building package 'diamond-aligner-dbgsym' in 'debian/.debhelper/scratch-space/build-diamond-aligner/diamond-aligner-dbgsym_0.9.22+dfsg-2_i386.deb'. pkgstripfiles: processing control file: debian/diamond-aligner/DEBIAN/control, package diamond-aligner, directory debian/diamond-aligner pkgstripfiles: Running PNG optimization (using 4 cpus) for package diamond-aligner ... pkgstripfiles: No PNG files. dpkg-deb: building package 'diamond-aligner' in '../diamond-aligner_0.9.22+dfsg-2_i386.deb'. Renaming diamond-aligner-dbgsym_0.9.22+dfsg-2_i386.deb to diamond-aligner-dbgsym_0.9.22+dfsg-2_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../diamond-aligner_0.9.22+dfsg-2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build diamond-aligner-0.9.22+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180821-2340 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ diamond-aligner_0.9.22+dfsg-2_i386.changes: ------------------------------------------- Format: 1.8 Date: Sun, 19 Aug 2018 06:41:39 +0200 Source: diamond-aligner Binary: diamond-aligner Architecture: i386 Version: 0.9.22+dfsg-2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: diamond-aligner - accelerated BLAST compatible local sequence aligner Closes: 906615 Changes: diamond-aligner (0.9.22+dfsg-2) unstable; urgency=medium . * Do not use march=native flag Closes: #906615 * Standards-Version: 4.2.0 Checksums-Sha1: 61bcdcbd94578a4d0b78692f27c894c04a2b2ff5 8392072 diamond-aligner-dbgsym_0.9.22+dfsg-2_i386.ddeb 6c7890e4155b4aa90445103e965e5ad0ed0d13ef 6584 diamond-aligner_0.9.22+dfsg-2_i386.buildinfo 805306d872ac8ea55ef269f5e8a22faf8cb1e8ca 550412 diamond-aligner_0.9.22+dfsg-2_i386.deb Checksums-Sha256: 6ecd1783c38df31990d2c75728a580e8d6380a1380d7a65bfb3e8a84faeef0f7 8392072 diamond-aligner-dbgsym_0.9.22+dfsg-2_i386.ddeb d9591e43892e6968faf2cb778c20c8f002cb99985a13dde40101aaa6878e441c 6584 diamond-aligner_0.9.22+dfsg-2_i386.buildinfo 3907c15d644c4a005273d65642209b075a8317ba5f56923786a495349f98365a 550412 diamond-aligner_0.9.22+dfsg-2_i386.deb Files: 22fcddf7e71c40e93fd7742067d8a0d2 8392072 debug optional diamond-aligner-dbgsym_0.9.22+dfsg-2_i386.ddeb 81406628da1836e5bf0f9e2c0cf3798c 6584 science optional diamond-aligner_0.9.22+dfsg-2_i386.buildinfo f7c40bad2158490dfb1b972f60e5593a 550412 science optional diamond-aligner_0.9.22+dfsg-2_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ diamond-aligner_0.9.22+dfsg-2_i386.deb -------------------------------------- new debian package, version 2.0. size 550412 bytes: control archive=984 bytes. 861 bytes, 17 lines control 457 bytes, 6 lines md5sums Package: diamond-aligner Version: 0.9.22+dfsg-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1502 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.2), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Recommends: med-config (>= 2.1) Section: science Priority: optional Homepage: https://github.com/bbuchfink/diamond Description: accelerated BLAST compatible local sequence aligner DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer sequences including contigs and assemblies, providing a speedup of BLAST ranging up to x20,000. drwxr-xr-x root/root 0 2018-08-19 04:41 ./ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/bin/ lrwxrwxrwx root/root 0 2018-08-19 04:41 ./usr/bin/diamond-aligner -> ../lib/debian-med/bin/diamond drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/bin/ -rwxr-xr-x root/root 1508184 2018-08-19 04:41 ./usr/lib/debian-med/bin/diamond drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/share/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/share/man/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/lib/debian-med/share/man/man1/ -rw-r--r-- root/root 2421 2018-08-19 04:41 ./usr/lib/debian-med/share/man/man1/diamond.1.gz drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/ -rw-r--r-- root/root 996 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/README.Debian -rw-r--r-- root/root 3825 2018-05-11 15:19 ./usr/share/doc/diamond-aligner/README.rst -rw-r--r-- root/root 582 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/changelog.Debian.gz -rw-r--r-- root/root 2378 2018-08-19 04:41 ./usr/share/doc/diamond-aligner/copyright drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/man/ drwxr-xr-x root/root 0 2018-08-19 04:41 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2018-08-19 04:41 ./usr/share/man/man1/diamond-aligner.1.gz -> ../../../lib/debian-med/share/man/man1/diamond.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 95840 Build-Time: 185 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 24 Job: diamond-aligner_0.9.22+dfsg-2.dsc Machine Architecture: amd64 Package: diamond-aligner Package-Time: 212 Source-Version: 0.9.22+dfsg-2 Space: 95840 Status: successful Version: 0.9.22+dfsg-2 -------------------------------------------------------------------------------- Finished at 20180821-2340 Build needed 00:03:32, 95840k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15291666 Scanning for processes to kill in build PACKAGEBUILD-15291666