RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux phianna 3.2.0-58-generic #88-Ubuntu SMP Tue Dec 3 17:37:58 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_125 python-lpbuildd_125 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.5. Syncing the system clock with the buildd NTP service... 24 Oct 12:31:21 ntpdate[34284]: adjust time server 10.211.37.1 offset 0.000029 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6487700', '/home/buildd/filecache-default/b60dc20d42da79776ca3a105691616b773d63fd5'] Unpacking chroot for build PACKAGEBUILD-6487700 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6487700'] Mounting chroot for build PACKAGEBUILD-6487700 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6487700', 'deb http://ftpmaster.internal/ubuntu vivid main universe', 'deb http://ftpmaster.internal/ubuntu vivid-security main universe', 'deb http://ftpmaster.internal/ubuntu vivid-updates main universe', 'deb http://ftpmaster.internal/ubuntu vivid-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6487700 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6487700', 'i386'] Updating debian chroot for build PACKAGEBUILD-6487700 Ign http://archive-team.internal vivid InRelease Ign http://archive-team.internal vivid Release.gpg Ign http://ftpmaster.internal vivid InRelease Get:1 http://archive-team.internal vivid Release [721 B] Ign http://ftpmaster.internal vivid-security InRelease Ign http://ftpmaster.internal vivid-updates InRelease Ign http://ftpmaster.internal vivid-proposed InRelease Get:2 http://ftpmaster.internal vivid Release.gpg [933 B] Get:3 http://ftpmaster.internal vivid-security Release.gpg [933 B] Get:4 http://ftpmaster.internal vivid-updates Release.gpg [933 B] Get:5 http://archive-team.internal vivid/main i386 Packages Get:6 http://ftpmaster.internal vivid-proposed Release.gpg [933 B] Get:7 http://ftpmaster.internal vivid Release [112 kB] Ign http://archive-team.internal vivid/main Translation-en Get:8 http://ftpmaster.internal vivid-security Release [59.7 kB] Get:9 http://ftpmaster.internal vivid-updates Release [59.7 kB] Get:10 http://ftpmaster.internal vivid-proposed Release [59.7 kB] Get:11 http://ftpmaster.internal vivid/main i386 Packages [1325 kB] Get:12 http://ftpmaster.internal vivid/universe i386 Packages [6186 kB] Get:13 http://ftpmaster.internal vivid/main Translation-en [769 kB] Get:14 http://ftpmaster.internal vivid/universe Translation-en [4267 kB] Get:15 http://ftpmaster.internal vivid-security/main i386 Packages [14 B] Get:16 http://ftpmaster.internal vivid-security/universe i386 Packages [14 B] Get:17 http://ftpmaster.internal vivid-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal vivid-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal vivid-updates/main i386 Packages [14 B] Get:20 http://ftpmaster.internal vivid-updates/universe i386 Packages [14 B] Get:21 http://ftpmaster.internal vivid-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal vivid-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal vivid-proposed/main i386 Packages [48.0 kB] Get:24 http://ftpmaster.internal vivid-proposed/universe i386 Packages [104 kB] Get:25 http://ftpmaster.internal vivid-proposed/main Translation-en [27.8 kB] Get:26 http://ftpmaster.internal vivid-proposed/universe Translation-en [103 kB] Fetched 13.1 MB in 6s (2140 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: base-files binutils ca-certificates cpp-4.9 g++-4.9 gcc-4.9 gcc-4.9-base grep libacl1 libasan1 libatomic1 libcilkrts5 libdb5.3 libgcc-4.9-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libitm1 libk5crypto3 libkrb5-3 libkrb5support0 libquadmath0 libsasl2-2 libsasl2-modules-db libstdc++-4.9-dev libstdc++6 libubsan0 tzdata 29 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 37.4 MB of archives. After this operation, 162 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main base-files i386 7.2ubuntu8 [68.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main grep i386 2.20-4 [149 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libubsan0 i386 4.9.1-19ubuntu1 [90.6 kB] Get:4 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9-base i386 4.9.1-19ubuntu1 [15.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++6 i386 4.9.1-19ubuntu1 [292 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgomp1 i386 4.9.1-19ubuntu1 [41.4 kB] Get:7 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libitm1 i386 4.9.1-19ubuntu1 [32.1 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libatomic1 i386 4.9.1-19ubuntu1 [10.0 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libasan1 i386 4.9.1-19ubuntu1 [197 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libcilkrts5 i386 4.9.1-19ubuntu1 [44.9 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libquadmath0 i386 4.9.1-19ubuntu1 [196 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc-4.9-dev i386 4.9.1-19ubuntu1 [2071 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cpp-4.9 i386 4.9.1-19ubuntu1 [5175 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid-proposed/main binutils i386 2.24.90.20141023-1ubuntu1 [2356 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid-proposed/main gcc-4.9 i386 4.9.1-19ubuntu1 [5798 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid-proposed/main g++-4.9 i386 4.9.1-19ubuntu1 [17.7 MB] Get:17 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libstdc++-4.9-dev i386 4.9.1-19ubuntu1 [1134 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgcc1 i386 1:4.9.1-19ubuntu1 [48.4 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgmp10 i386 2:6.0.0+dfsg-6 [243 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libacl1 i386 2.2.52-2 [17.6 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libdb5.3 i386 5.3.28-6 [729 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgssapi-krb5-2 i386 1.12.1+dfsg-11 [128 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libkrb5-3 i386 1.12.1+dfsg-11 [293 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libkrb5support0 i386 1.12.1+dfsg-11 [32.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libk5crypto3 i386 1.12.1+dfsg-11 [83.2 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsasl2-modules-db i386 2.1.26.dfsg1-12 [15.3 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libsasl2-2 i386 2.1.26.dfsg1-12 [52.1 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main tzdata all 2014i-1 [182 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid-proposed/main ca-certificates all 20141019 [192 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.4 MB in 1s (18.8 MB/s) (Reading database ... 11468 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu8_i386.deb ... Unpacking base-files (7.2ubuntu8) over (7.2ubuntu7) ... Setting up base-files (7.2ubuntu8) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 11468 files and directories currently installed.) Preparing to unpack .../archives/grep_2.20-4_i386.deb ... Unpacking grep (2.20-4) over (2.20-3) ... Setting up grep (2.20-4) ... (Reading database ... 11468 files and directories currently installed.) Preparing to unpack .../libubsan0_4.9.1-19ubuntu1_i386.deb ... Unpacking libubsan0:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../gcc-4.9-base_4.9.1-19ubuntu1_i386.deb ... Unpacking gcc-4.9-base:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up gcc-4.9-base:i386 (4.9.1-19ubuntu1) ... (Reading database ... 11468 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-19ubuntu1_i386.deb ... Unpacking libstdc++6:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Setting up libstdc++6:i386 (4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11468 files and directories currently installed.) Preparing to unpack .../libgomp1_4.9.1-19ubuntu1_i386.deb ... Unpacking libgomp1:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libitm1_4.9.1-19ubuntu1_i386.deb ... Unpacking libitm1:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libatomic1_4.9.1-19ubuntu1_i386.deb ... Unpacking libatomic1:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libasan1_4.9.1-19ubuntu1_i386.deb ... Unpacking libasan1:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libcilkrts5_4.9.1-19ubuntu1_i386.deb ... Unpacking libcilkrts5:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libquadmath0_4.9.1-19ubuntu1_i386.deb ... Unpacking libquadmath0:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc-4.9-dev_4.9.1-19ubuntu1_i386.deb ... Unpacking libgcc-4.9-dev:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../cpp-4.9_4.9.1-19ubuntu1_i386.deb ... Unpacking cpp-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../binutils_2.24.90.20141023-1ubuntu1_i386.deb ... Unpacking binutils (2.24.90.20141023-1ubuntu1) over (2.24.90.20141014-0ubuntu3) ... Preparing to unpack .../gcc-4.9_4.9.1-19ubuntu1_i386.deb ... Unpacking gcc-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../g++-4.9_4.9.1-19ubuntu1_i386.deb ... Unpacking g++-4.9 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libstdc++-4.9-dev_4.9.1-19ubuntu1_i386.deb ... Unpacking libstdc++-4.9-dev:i386 (4.9.1-19ubuntu1) over (4.9.1-16ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.1-19ubuntu1_i386.deb ... Unpacking libgcc1:i386 (1:4.9.1-19ubuntu1) over (1:4.9.1-16ubuntu6) ... Setting up libgcc1:i386 (1:4.9.1-19ubuntu1) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11472 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.0.0+dfsg-6_i386.deb ... Unpacking libgmp10:i386 (2:6.0.0+dfsg-6) over (2:6.0.0+dfsg-4build1) ... Preparing to unpack .../libacl1_2.2.52-2_i386.deb ... Unpacking libacl1:i386 (2.2.52-2) over (2.2.52-1.1) ... Setting up libacl1:i386 (2.2.52-2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11472 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28-6_i386.deb ... Unpacking libdb5.3:i386 (5.3.28-6) over (5.3.28-5) ... Setting up libdb5.3:i386 (5.3.28-6) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... (Reading database ... 11472 files and directories currently installed.) Preparing to unpack .../libgssapi-krb5-2_1.12.1+dfsg-11_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5-3_1.12.1+dfsg-11_i386.deb ... Unpacking libkrb5-3:i386 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libkrb5support0_1.12.1+dfsg-11_i386.deb ... Unpacking libkrb5support0:i386 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libk5crypto3_1.12.1+dfsg-11_i386.deb ... Unpacking libk5crypto3:i386 (1.12.1+dfsg-11) over (1.12.1+dfsg-10) ... Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-12_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-12_i386.deb ... Unpacking libsasl2-2:i386 (2.1.26.dfsg1-12) over (2.1.26.dfsg1-11) ... Preparing to unpack .../tzdata_2014i-1_all.deb ... Unpacking tzdata (2014i-1) over (2014h-2) ... Setting up tzdata (2014i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 24 12:32:24 UTC 2014. Universal Time is now: Fri Oct 24 12:32:24 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11475 files and directories currently installed.) Preparing to unpack .../ca-certificates_20141019_all.deb ... Unpacking ca-certificates (20141019) over (20140325) ... Setting up libubsan0:i386 (4.9.1-19ubuntu1) ... Setting up libgomp1:i386 (4.9.1-19ubuntu1) ... Setting up libitm1:i386 (4.9.1-19ubuntu1) ... Setting up libatomic1:i386 (4.9.1-19ubuntu1) ... Setting up libasan1:i386 (4.9.1-19ubuntu1) ... Setting up libcilkrts5:i386 (4.9.1-19ubuntu1) ... Setting up libquadmath0:i386 (4.9.1-19ubuntu1) ... Setting up libgcc-4.9-dev:i386 (4.9.1-19ubuntu1) ... Setting up libgmp10:i386 (2:6.0.0+dfsg-6) ... Setting up cpp-4.9 (4.9.1-19ubuntu1) ... Setting up binutils (2.24.90.20141023-1ubuntu1) ... Setting up gcc-4.9 (4.9.1-19ubuntu1) ... Setting up libstdc++-4.9-dev:i386 (4.9.1-19ubuntu1) ... Setting up g++-4.9 (4.9.1-19ubuntu1) ... Setting up libkrb5support0:i386 (1.12.1+dfsg-11) ... Setting up libk5crypto3:i386 (1.12.1+dfsg-11) ... Setting up libkrb5-3:i386 (1.12.1+dfsg-11) ... Setting up libgssapi-krb5-2:i386 (1.12.1+dfsg-11) ... Setting up libsasl2-modules-db:i386 (2.1.26.dfsg1-12) ... Setting up libsasl2-2:i386 (2.1.26.dfsg1-12) ... Setting up ca-certificates (20141019) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for ca-certificates (20141019) ... Updating certificates in /etc/ssl/certs... 10 added, 5 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6487700', 'i386', 'vivid-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=vivid-proposed', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'dipy_0.7.1-2.dsc'] Initiating build PACKAGEBUILD-6487700 with 12 jobs across 12 processor cores. Kernel reported to sbuild: 3.2.0-58-generic #88-Ubuntu SMP Tue Dec 3 17:37:58 UTC 2013 i686 Automatic build of dipy_0.7.1-2 on phianna by sbuild/i386 1.170.5 Build started at 20141024-1232 ****************************************************************************** dipy_0.7.1-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.50~), python-all-dev, python-support, python-numpy, python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-nose, python-nibabel Checking for already installed source dependencies... debhelper: missing python-all-dev: missing python-support: missing python-numpy: missing python-scipy: missing cython: missing python-matplotlib: missing python-sphinx: missing python-nose: missing python-nibabel: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper python-all-dev python-support python-numpy python-scipy cython python-matplotlib python-sphinx python-nose python-nibabel Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils dh-apparmor docutils-common file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian libasprintf0c2 libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-dateutil python-decorator python-dev python-docutils python-jinja2 python-markupsafe python-matplotlib-data python-minimal python-pkg-resources python-pygments python-pyparsing python-roman python-tz python2.7 python2.7-dev python2.7-minimal sgml-base shared-mime-info sphinx-common ucf x11-common xml-core Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff cups-common librsvg2-common gvfs libjasper-runtime javascript-common libjs-jquery-ui-docs tcl8.6 tk8.6 less www-browser libmail-box-perl python-doc python-tk texlive-latex-recommended texlive-latex-base texlive-lang-french fonts-linuxlibertine ttf-linux-libertine python-jinja2-doc dvipng gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairo python-configobj python-excelerator python-gobject python-gtk2 python-matplotlib-doc python-qt4 python-sip python-tornado python-traits python-wxgtk2.8 texlive-extra-utils texlive-latex-extra ttf-staypuft python-nibabel-doc python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-distribute python-distribute-doc ttf-bitstream-vera jsmath libjs-mathjax texlive-fonts-recommended python2.7-doc binfmt-support sgml-base-doc Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data xdg-user-dirs hicolor-icon-theme libgtk2.0-bin libmail-sendmail-perl python-pil libpaper-utils docutils-doc python-glade2 python-imaging python-dicom python-fuse python-chardet sphinx-doc The following NEW packages will be installed: bsdmainutils cython debhelper dh-apparmor docutils-common file fontconfig fontconfig-config fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian libasprintf0c2 libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcairo2 libcroco3 libcups2 libdatrie1 libexpat1 libexpat1-dev libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran3 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 libxss1 man-db mime-support po-debconf python python-all python-all-dev python-dateutil python-decorator python-dev python-docutils python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-pkg-resources python-pygments python-pyparsing python-roman python-scipy python-sphinx python-support python-tz python2.7 python2.7-dev python2.7-minimal sgml-base shared-mime-info sphinx-common ucf x11-common xml-core 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 74.4 MB of archives. After this operation, 211 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1 i386 2.1.0-6ubuntu1 [74.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ vivid/main libmagic1 i386 1:5.19-1ubuntu1.1 [206 kB] Get:3 http://ftpmaster.internal/ubuntu/ vivid/main libasprintf0c2 i386 0.19.2-2ubuntu1 [6332 B] Get:4 http://ftpmaster.internal/ubuntu/ vivid/main libglib2.0-0 i386 2.42.0-2 [1150 kB] Get:5 http://ftpmaster.internal/ubuntu/ vivid/main libpipeline1 i386 1.3.1-1 [25.4 kB] Get:6 http://ftpmaster.internal/ubuntu/ vivid/main libxau6 i386 1:1.0.8-1 [8352 B] Get:7 http://ftpmaster.internal/ubuntu/ vivid/main libxdmcp6 i386 1:1.1.1-1build1 [11.1 kB] Get:8 http://ftpmaster.internal/ubuntu/ vivid/main libxcb1 i386 1.10-2ubuntu1 [40.6 kB] Get:9 http://ftpmaster.internal/ubuntu/ vivid/main libx11-data all 2:1.6.2-2ubuntu2 [112 kB] Get:10 http://ftpmaster.internal/ubuntu/ vivid/main libx11-6 i386 2:1.6.2-2ubuntu2 [589 kB] Get:11 http://ftpmaster.internal/ubuntu/ vivid/main libxext6 i386 2:1.3.2-1 [33.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ vivid/main libxml2 i386 2.9.1+dfsg1-4ubuntu1 [613 kB] Get:13 http://ftpmaster.internal/ubuntu/ vivid/main groff-base i386 1.22.2-8 [1174 kB] Get:14 http://ftpmaster.internal/ubuntu/ vivid/main bsdmainutils i386 9.0.5ubuntu1 [197 kB] Get:15 http://ftpmaster.internal/ubuntu/ vivid/main man-db i386 2.7.0.2-2 [871 kB] Get:16 http://ftpmaster.internal/ubuntu/ vivid/main sgml-base all 1.26+nmu4ubuntu1 [12.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ vivid/main libatk1.0-data all 2.12.0-1ubuntu2 [15.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ vivid/main libatk1.0-0 i386 2.12.0-1ubuntu2 [56.9 kB] Get:19 http://ftpmaster.internal/ubuntu/ vivid/main libavahi-common-data i386 0.6.31-4ubuntu3 [21.1 kB] Get:20 http://ftpmaster.internal/ubuntu/ vivid/main libavahi-common3 i386 0.6.31-4ubuntu3 [23.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ vivid/main libavahi-client3 i386 0.6.31-4ubuntu3 [27.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ vivid/main fonts-dejavu-core all 2.34-1ubuntu1 [1024 kB] Get:23 http://ftpmaster.internal/ubuntu/ vivid/main ucf all 3.0030 [55.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig-config all 2.11.1-0ubuntu3 [48.7 kB] Get:25 http://ftpmaster.internal/ubuntu/ vivid/main libfreetype6 i386 2.5.2-2ubuntu1 [329 kB] Get:26 http://ftpmaster.internal/ubuntu/ vivid/main libfontconfig1 i386 2.11.1-0ubuntu3 [125 kB] Get:27 http://ftpmaster.internal/ubuntu/ vivid/main libpixman-1-0 i386 0.32.4-1ubuntu1 [219 kB] Get:28 http://ftpmaster.internal/ubuntu/ vivid/main libxcb-render0 i386 1.10-2ubuntu1 [11.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ vivid/main libxcb-shm0 i386 1.10-2ubuntu1 [5622 B] Get:30 http://ftpmaster.internal/ubuntu/ vivid/main libxrender1 i386 1:0.9.8-1 [20.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ vivid/main libcairo2 i386 1.13.0~20140204-0ubuntu1 [550 kB] Get:32 http://ftpmaster.internal/ubuntu/ vivid/main libcroco3 i386 0.6.8-3 [89.2 kB] Get:33 http://ftpmaster.internal/ubuntu/ vivid/main libcups2 i386 1.7.5-3ubuntu2 [195 kB] Get:34 http://ftpmaster.internal/ubuntu/ vivid/main libdatrie1 i386 0.2.8-1 [17.3 kB] Get:35 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg-turbo8 i386 1.3.0-0ubuntu2 [107 kB] Get:36 http://ftpmaster.internal/ubuntu/ vivid/main libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:37 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libjasper1 i386 1.900.1-debian1-2.1 [135 kB] Get:38 http://ftpmaster.internal/ubuntu/ vivid/main libjbig0 i386 2.1-3ubuntu1 [27.1 kB] Get:39 http://ftpmaster.internal/ubuntu/ vivid/main libtiff5 i386 4.0.3-10build1 [154 kB] Get:40 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgdk-pixbuf2.0-common all 2.31.1-2 [9032 B] Get:41 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgdk-pixbuf2.0-0 i386 2.31.1-2 [170 kB] Get:42 http://ftpmaster.internal/ubuntu/ vivid-proposed/main libgfortran3 i386 4.9.1-19ubuntu1 [241 kB] Get:43 http://ftpmaster.internal/ubuntu/ vivid/main libgraphite2-3 i386 1.2.4-3ubuntu1 [57.5 kB] Get:44 http://ftpmaster.internal/ubuntu/ vivid/main libgtk2.0-common all 2.24.25-0ubuntu1 [121 kB] Get:45 http://ftpmaster.internal/ubuntu/ vivid/main libthai-data all 0.1.20-3 [130 kB] Get:46 http://ftpmaster.internal/ubuntu/ vivid/main libthai0 i386 0.1.20-3 [17.1 kB] Get:47 http://ftpmaster.internal/ubuntu/ vivid/main fontconfig i386 2.11.1-0ubuntu3 [175 kB] Get:48 http://ftpmaster.internal/ubuntu/ vivid/main libpango-1.0-0 i386 1.36.6-1 [158 kB] Get:49 http://ftpmaster.internal/ubuntu/ vivid/main libharfbuzz0b i386 0.9.35-1 [138 kB] Get:50 http://ftpmaster.internal/ubuntu/ vivid/main libpangoft2-1.0-0 i386 1.36.6-1 [36.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ vivid/main libpangocairo-1.0-0 i386 1.36.6-1 [22.3 kB] Get:52 http://ftpmaster.internal/ubuntu/ vivid/main libxcomposite1 i386 1:0.4.4-1 [7594 B] Get:53 http://ftpmaster.internal/ubuntu/ vivid/main libxfixes3 i386 1:5.0.1-2 [11.4 kB] Get:54 http://ftpmaster.internal/ubuntu/ vivid/main libxcursor1 i386 1:1.1.14-1 [22.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ vivid/main libxdamage1 i386 1:1.1.4-2 [6812 B] Get:56 http://ftpmaster.internal/ubuntu/ vivid/main libxi6 i386 2:1.7.4-1 [29.9 kB] Get:57 http://ftpmaster.internal/ubuntu/ vivid/main libxinerama1 i386 2:1.1.3-1 [7900 B] Get:58 http://ftpmaster.internal/ubuntu/ vivid/main libxrandr2 i386 2:1.4.2-1 [16.1 kB] Get:59 http://ftpmaster.internal/ubuntu/ vivid/main shared-mime-info i386 1.2-0ubuntu3 [414 kB] Get:60 http://ftpmaster.internal/ubuntu/ vivid/main libgtk2.0-0 i386 2.24.25-0ubuntu1 [1897 kB] Get:61 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-minimal i386 2.7.8-10ubuntu1 [332 kB] Get:62 http://ftpmaster.internal/ubuntu/ vivid/main mime-support all 3.55ubuntu1 [31.1 kB] Get:63 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-stdlib i386 2.7.8-10ubuntu1 [1853 kB] Get:64 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7 i386 2.7.8-10ubuntu1 [1101 kB] Get:65 http://ftpmaster.internal/ubuntu/ vivid/main libexpat1-dev i386 2.1.0-6ubuntu1 [115 kB] Get:66 http://ftpmaster.internal/ubuntu/ vivid/main libpython2.7-dev i386 2.7.8-10ubuntu1 [32.0 MB] Get:67 http://ftpmaster.internal/ubuntu/ vivid/main libtcl8.6 i386 8.6.1-6ubuntu1 [895 kB] Get:68 http://ftpmaster.internal/ubuntu/ vivid/main libxft2 i386 2.3.2-1 [35.5 kB] Get:69 http://ftpmaster.internal/ubuntu/ vivid/main x11-common all 1:7.7+7ubuntu2 [62.5 kB] Get:70 http://ftpmaster.internal/ubuntu/ vivid/main libxss1 i386 1:1.2.2-1 [8566 B] Get:71 http://ftpmaster.internal/ubuntu/ vivid/main libtk8.6 i386 8.6.1-3ubuntu2 [670 kB] Get:72 http://ftpmaster.internal/ubuntu/ vivid/main libunistring0 i386 0.9.3-5ubuntu3 [272 kB] Get:73 http://ftpmaster.internal/ubuntu/ vivid/main python2.7-minimal i386 2.7.8-10ubuntu1 [1352 kB] Get:74 http://ftpmaster.internal/ubuntu/ vivid/main file i386 1:5.19-1ubuntu1.1 [19.9 kB] Get:75 http://ftpmaster.internal/ubuntu/ vivid/main gettext-base i386 0.19.2-2ubuntu1 [48.8 kB] Get:76 http://ftpmaster.internal/ubuntu/ vivid/main xml-core all 0.13+nmu2 [23.3 kB] Get:77 http://ftpmaster.internal/ubuntu/ vivid/main python2.7 i386 2.7.8-10ubuntu1 [205 kB] Get:78 http://ftpmaster.internal/ubuntu/ vivid/main python-minimal i386 2.7.8-1 [28.2 kB] Get:79 http://ftpmaster.internal/ubuntu/ vivid/main libpython-stdlib i386 2.7.8-1 [7720 B] Get:80 http://ftpmaster.internal/ubuntu/ vivid/main python i386 2.7.8-1 [138 kB] Get:81 http://ftpmaster.internal/ubuntu/ vivid-proposed/main cython i386 0.21.1-1 [1492 kB] Get:82 http://ftpmaster.internal/ubuntu/ vivid/main gettext i386 0.19.2-2ubuntu1 [854 kB] Get:83 http://ftpmaster.internal/ubuntu/ vivid/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:84 http://ftpmaster.internal/ubuntu/ vivid/main po-debconf all 1.0.16+nmu3 [207 kB] Get:85 http://ftpmaster.internal/ubuntu/ vivid/main dh-apparmor all 2.8.98-0ubuntu2 [11.0 kB] Get:86 http://ftpmaster.internal/ubuntu/ vivid/main debhelper all 9.20141003ubuntu1 [726 kB] Get:87 http://ftpmaster.internal/ubuntu/ vivid/main docutils-common all 0.12+dfsg-1 [141 kB] Get:88 http://ftpmaster.internal/ubuntu/ vivid/universe fonts-lyx all 2.0.6-1build2 [151 kB] Get:89 http://ftpmaster.internal/ubuntu/ vivid/main libblas3 i386 1.2.20110419-7ubuntu1 [139 kB] Get:90 http://ftpmaster.internal/ubuntu/ vivid/main libjs-jquery all 1.7.2+dfsg-3ubuntu2 [69.0 kB] Get:91 http://ftpmaster.internal/ubuntu/ vivid/universe libjs-jquery-ui all 1.10.1+dfsg-1 [458 kB] Get:92 http://ftpmaster.internal/ubuntu/ vivid/main libjs-underscore all 1.4.4-2ubuntu1 [45.6 kB] Get:93 http://ftpmaster.internal/ubuntu/ vivid/main libjs-sphinxdoc all 1.2.2+dfsg-1ubuntu2 [41.4 kB] Get:94 http://ftpmaster.internal/ubuntu/ vivid-proposed/main liblapack3 i386 3.5.0-4 [1624 kB] Get:95 http://ftpmaster.internal/ubuntu/ vivid/main libpython-dev i386 2.7.8-1 [7804 B] Get:96 http://ftpmaster.internal/ubuntu/ vivid/main libpython-all-dev i386 2.7.8-1 [1052 B] Get:97 http://ftpmaster.internal/ubuntu/ vivid/main python-all i386 2.7.8-1 [1032 B] Get:98 http://ftpmaster.internal/ubuntu/ vivid/main python2.7-dev i386 2.7.8-10ubuntu1 [276 kB] Get:99 http://ftpmaster.internal/ubuntu/ vivid/main python-dev i386 2.7.8-1 [1214 B] Get:100 http://ftpmaster.internal/ubuntu/ vivid/main python-all-dev i386 2.7.8-1 [1060 B] Get:101 http://ftpmaster.internal/ubuntu/ vivid/main python-dateutil all 1.5+dfsg-1ubuntu1 [48.9 kB] Get:102 http://ftpmaster.internal/ubuntu/ vivid/main python-decorator all 3.4.0-2build1 [19.2 kB] Get:103 http://ftpmaster.internal/ubuntu/ vivid/main python-roman all 2.0.0-1 [7758 B] Get:104 http://ftpmaster.internal/ubuntu/ vivid/main python-docutils all 0.12+dfsg-1 [348 kB] Get:105 http://ftpmaster.internal/ubuntu/ vivid/main python-markupsafe i386 0.23-1 [15.7 kB] Get:106 http://ftpmaster.internal/ubuntu/ vivid/main python-jinja2 all 2.7.3-1 [161 kB] Get:107 http://ftpmaster.internal/ubuntu/ vivid/universe python-matplotlib-data all 1.3.1-2ubuntu1 [2393 kB] Get:108 http://ftpmaster.internal/ubuntu/ vivid/main python-pyparsing all 2.0.3+dfsg1-1 [35.3 kB] Get:109 http://ftpmaster.internal/ubuntu/ vivid/main python-tz all 2012c-1build1 [32.0 kB] Get:110 http://ftpmaster.internal/ubuntu/ vivid/main python-numpy i386 1:1.8.2-1ubuntu1 [1648 kB] Get:111 http://ftpmaster.internal/ubuntu/ vivid/universe python-support all 1.0.15 [26.7 kB] Get:112 http://ftpmaster.internal/ubuntu/ vivid/universe python-matplotlib i386 1.3.1-2ubuntu1 [1391 kB] Get:113 http://ftpmaster.internal/ubuntu/ vivid/main python-pkg-resources all 5.5.1-1 [61.8 kB] Get:114 http://ftpmaster.internal/ubuntu/ vivid/main python-nose all 1.3.4-1 [119 kB] Get:115 http://ftpmaster.internal/ubuntu/ vivid/main python-pygments all 1.6+dfsg-1ubuntu1 [519 kB] Get:116 http://ftpmaster.internal/ubuntu/ vivid/main sphinx-common all 1.2.2+dfsg-1ubuntu2 [392 kB] Get:117 http://ftpmaster.internal/ubuntu/ vivid/main python-sphinx all 1.2.2+dfsg-1ubuntu2 [271 kB] Get:118 http://ftpmaster.internal/ubuntu/ vivid/universe python-scipy i386 0.14.0-2ubuntu1 [7655 kB] Get:119 http://ftpmaster.internal/ubuntu/ vivid/universe python-nibabel all 1.3.0-2 [1720 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 74.4 MB in 8s (9232 kB/s) Selecting previously unselected package libexpat1:i386. (Reading database ... 11480 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6ubuntu1_i386.deb ... Unpacking libexpat1:i386 (2.1.0-6ubuntu1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../libmagic1_1%3a5.19-1ubuntu1.1_i386.deb ... Unpacking libmagic1:i386 (1:5.19-1ubuntu1.1) ... Selecting previously unselected package libasprintf0c2:i386. Preparing to unpack .../libasprintf0c2_0.19.2-2ubuntu1_i386.deb ... Unpacking libasprintf0c2:i386 (0.19.2-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../libglib2.0-0_2.42.0-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.42.0-2) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../libpipeline1_1.3.1-1_i386.deb ... Unpacking libpipeline1:i386 (1.3.1-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../libxau6_1%3a1.0.8-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1build1_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.1-1build1) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../libxcb1_1.10-2ubuntu1_i386.deb ... Unpacking libxcb1:i386 (1.10-2ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-2ubuntu2_all.deb ... Unpacking libx11-data (2:1.6.2-2ubuntu2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../libx11-6_2%3a1.6.2-2ubuntu2_i386.deb ... Unpacking libx11-6:i386 (2:1.6.2-2ubuntu2) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../libxext6_2%3a1.3.2-1_i386.deb ... Unpacking libxext6:i386 (2:1.3.2-1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../libxml2_2.9.1+dfsg1-4ubuntu1_i386.deb ... Unpacking libxml2:i386 (2.9.1+dfsg1-4ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-8_i386.deb ... Unpacking groff-base (1.22.2-8) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_i386.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.0.2-2_i386.deb ... Unpacking man-db (2.7.0.2-2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../sgml-base_1.26+nmu4ubuntu1_all.deb ... Unpacking sgml-base (1.26+nmu4ubuntu1) ... Selecting previously unselected package libatk1.0-data. Preparing to unpack .../libatk1.0-data_2.12.0-1ubuntu2_all.deb ... Unpacking libatk1.0-data (2.12.0-1ubuntu2) ... Selecting previously unselected package libatk1.0-0:i386. Preparing to unpack .../libatk1.0-0_2.12.0-1ubuntu2_i386.deb ... Unpacking libatk1.0-0:i386 (2.12.0-1ubuntu2) ... Selecting previously unselected package libavahi-common-data:i386. Preparing to unpack .../libavahi-common-data_0.6.31-4ubuntu3_i386.deb ... Unpacking libavahi-common-data:i386 (0.6.31-4ubuntu3) ... Selecting previously unselected package libavahi-common3:i386. Preparing to unpack .../libavahi-common3_0.6.31-4ubuntu3_i386.deb ... Unpacking libavahi-common3:i386 (0.6.31-4ubuntu3) ... Selecting previously unselected package libavahi-client3:i386. Preparing to unpack .../libavahi-client3_0.6.31-4ubuntu3_i386.deb ... Unpacking libavahi-client3:i386 (0.6.31-4ubuntu3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.34-1ubuntu1_all.deb ... Unpacking fonts-dejavu-core (2.34-1ubuntu1) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.1-0ubuntu3_all.deb ... Unpacking fontconfig-config (2.11.1-0ubuntu3) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../libfreetype6_2.5.2-2ubuntu1_i386.deb ... Unpacking libfreetype6:i386 (2.5.2-2ubuntu1) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../libfontconfig1_2.11.1-0ubuntu3_i386.deb ... Unpacking libfontconfig1:i386 (2.11.1-0ubuntu3) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../libpixman-1-0_0.32.4-1ubuntu1_i386.deb ... Unpacking libpixman-1-0:i386 (0.32.4-1ubuntu1) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../libxcb-render0_1.10-2ubuntu1_i386.deb ... Unpacking libxcb-render0:i386 (1.10-2ubuntu1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../libxcb-shm0_1.10-2ubuntu1_i386.deb ... Unpacking libxcb-shm0:i386 (1.10-2ubuntu1) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../libxrender1_1%3a0.9.8-1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.8-1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../libcairo2_1.13.0~20140204-0ubuntu1_i386.deb ... Unpacking libcairo2:i386 (1.13.0~20140204-0ubuntu1) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../libcroco3_0.6.8-3_i386.deb ... Unpacking libcroco3:i386 (0.6.8-3) ... Selecting previously unselected package libcups2:i386. Preparing to unpack .../libcups2_1.7.5-3ubuntu2_i386.deb ... Unpacking libcups2:i386 (1.7.5-3ubuntu2) ... Selecting previously unselected package libdatrie1:i386. Preparing to unpack .../libdatrie1_0.2.8-1_i386.deb ... Unpacking libdatrie1:i386 (0.2.8-1) ... Selecting previously unselected package libjpeg-turbo8:i386. Preparing to unpack .../libjpeg-turbo8_1.3.0-0ubuntu2_i386.deb ... Unpacking libjpeg-turbo8:i386 (1.3.0-0ubuntu2) ... Selecting previously unselected package libjpeg8:i386. Preparing to unpack .../libjpeg8_8c-2ubuntu8_i386.deb ... Unpacking libjpeg8:i386 (8c-2ubuntu8) ... Selecting previously unselected package libjasper1:i386. Preparing to unpack .../libjasper1_1.900.1-debian1-2.1_i386.deb ... Unpacking libjasper1:i386 (1.900.1-debian1-2.1) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../libjbig0_2.1-3ubuntu1_i386.deb ... Unpacking libjbig0:i386 (2.1-3ubuntu1) ... Selecting previously unselected package libtiff5:i386. Preparing to unpack .../libtiff5_4.0.3-10build1_i386.deb ... Unpacking libtiff5:i386 (4.0.3-10build1) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../libgdk-pixbuf2.0-common_2.31.1-2_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.31.1-2) ... Selecting previously unselected package libgdk-pixbuf2.0-0:i386. Preparing to unpack .../libgdk-pixbuf2.0-0_2.31.1-2_i386.deb ... Unpacking libgdk-pixbuf2.0-0:i386 (2.31.1-2) ... Selecting previously unselected package libgfortran3:i386. Preparing to unpack .../libgfortran3_4.9.1-19ubuntu1_i386.deb ... Unpacking libgfortran3:i386 (4.9.1-19ubuntu1) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../libgraphite2-3_1.2.4-3ubuntu1_i386.deb ... Unpacking libgraphite2-3:i386 (1.2.4-3ubuntu1) ... Selecting previously unselected package libgtk2.0-common. Preparing to unpack .../libgtk2.0-common_2.24.25-0ubuntu1_all.deb ... Unpacking libgtk2.0-common (2.24.25-0ubuntu1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../libthai-data_0.1.20-3_all.deb ... Unpacking libthai-data (0.1.20-3) ... Selecting previously unselected package libthai0:i386. Preparing to unpack .../libthai0_0.1.20-3_i386.deb ... Unpacking libthai0:i386 (0.1.20-3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../fontconfig_2.11.1-0ubuntu3_i386.deb ... Unpacking fontconfig (2.11.1-0ubuntu3) ... Selecting previously unselected package libpango-1.0-0:i386. Preparing to unpack .../libpango-1.0-0_1.36.6-1_i386.deb ... Unpacking libpango-1.0-0:i386 (1.36.6-1) ... Selecting previously unselected package libharfbuzz0b:i386. Preparing to unpack .../libharfbuzz0b_0.9.35-1_i386.deb ... Unpacking libharfbuzz0b:i386 (0.9.35-1) ... Selecting previously unselected package libpangoft2-1.0-0:i386. Preparing to unpack .../libpangoft2-1.0-0_1.36.6-1_i386.deb ... Unpacking libpangoft2-1.0-0:i386 (1.36.6-1) ... Selecting previously unselected package libpangocairo-1.0-0:i386. Preparing to unpack .../libpangocairo-1.0-0_1.36.6-1_i386.deb ... Unpacking libpangocairo-1.0-0:i386 (1.36.6-1) ... Selecting previously unselected package libxcomposite1:i386. Preparing to unpack .../libxcomposite1_1%3a0.4.4-1_i386.deb ... Unpacking libxcomposite1:i386 (1:0.4.4-1) ... Selecting previously unselected package libxfixes3:i386. 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Unpacking python-matplotlib (1.3.1-2ubuntu1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../python-pkg-resources_5.5.1-1_all.deb ... Unpacking python-pkg-resources (5.5.1-1) ... Selecting previously unselected package python-nose. Preparing to unpack .../python-nose_1.3.4-1_all.deb ... Unpacking python-nose (1.3.4-1) ... Selecting previously unselected package python-pygments. Preparing to unpack .../python-pygments_1.6+dfsg-1ubuntu1_all.deb ... Unpacking python-pygments (1.6+dfsg-1ubuntu1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../sphinx-common_1.2.2+dfsg-1ubuntu2_all.deb ... Unpacking sphinx-common (1.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package python-sphinx. Preparing to unpack .../python-sphinx_1.2.2+dfsg-1ubuntu2_all.deb ... Unpacking python-sphinx (1.2.2+dfsg-1ubuntu2) ... Selecting previously unselected package python-scipy. 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Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up sgml-base (1.26+nmu4ubuntu1) ... Setting up libatk1.0-data (2.12.0-1ubuntu2) ... Setting up libatk1.0-0:i386 (2.12.0-1ubuntu2) ... Setting up libavahi-common-data:i386 (0.6.31-4ubuntu3) ... Setting up libavahi-common3:i386 (0.6.31-4ubuntu3) ... Setting up libavahi-client3:i386 (0.6.31-4ubuntu3) ... Setting up fonts-dejavu-core (2.34-1ubuntu1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu3) ... Setting up libfreetype6:i386 (2.5.2-2ubuntu1) ... Setting up libfontconfig1:i386 (2.11.1-0ubuntu3) ... Setting up libpixman-1-0:i386 (0.32.4-1ubuntu1) ... Setting up libxcb-render0:i386 (1.10-2ubuntu1) ... Setting up libxcb-shm0:i386 (1.10-2ubuntu1) ... Setting up libxrender1:i386 (1:0.9.8-1) ... Setting up libcairo2:i386 (1.13.0~20140204-0ubuntu1) ... Setting up libcroco3:i386 (0.6.8-3) ... Setting up libcups2:i386 (1.7.5-3ubuntu2) ... Setting up libdatrie1:i386 (0.2.8-1) ... Setting up libjpeg-turbo8:i386 (1.3.0-0ubuntu2) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjasper1:i386 (1.900.1-debian1-2.1) ... Setting up libjbig0:i386 (2.1-3ubuntu1) ... Setting up libtiff5:i386 (4.0.3-10build1) ... Setting up libgdk-pixbuf2.0-common (2.31.1-2) ... Setting up libgdk-pixbuf2.0-0:i386 (2.31.1-2) ... Setting up libgfortran3:i386 (4.9.1-19ubuntu1) ... Setting up libgraphite2-3:i386 (1.2.4-3ubuntu1) ... Setting up libgtk2.0-common (2.24.25-0ubuntu1) ... Setting up libthai-data (0.1.20-3) ... Setting up libthai0:i386 (0.1.20-3) ... Setting up fontconfig (2.11.1-0ubuntu3) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:i386 (1.36.6-1) ... Setting up libharfbuzz0b:i386 (0.9.35-1) ... Setting up libpangoft2-1.0-0:i386 (1.36.6-1) ... Setting up libpangocairo-1.0-0:i386 (1.36.6-1) ... Setting up libxcomposite1:i386 (1:0.4.4-1) ... Setting up libxfixes3:i386 (1:5.0.1-2) ... Setting up libxcursor1:i386 (1:1.1.14-1) ... Setting up libxdamage1:i386 (1:1.1.4-2) ... Setting up libxi6:i386 (2:1.7.4-1) ... Setting up libxinerama1:i386 (2:1.1.3-1) ... Setting up libxrandr2:i386 (2:1.4.2-1) ... Setting up shared-mime-info (1.2-0ubuntu3) ... Setting up libgtk2.0-0:i386 (2.24.25-0ubuntu1) ... Setting up libpython2.7-minimal:i386 (2.7.8-10ubuntu1) ... Setting up mime-support (3.55ubuntu1) ... Setting up libpython2.7-stdlib:i386 (2.7.8-10ubuntu1) ... Setting up libpython2.7:i386 (2.7.8-10ubuntu1) ... Setting up libexpat1-dev:i386 (2.1.0-6ubuntu1) ... Setting up libpython2.7-dev:i386 (2.7.8-10ubuntu1) ... Setting up libtcl8.6:i386 (8.6.1-6ubuntu1) ... Setting up libxft2:i386 (2.3.2-1) ... Setting up x11-common (1:7.7+7ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: policy-rc.d denied execution of start. Setting up libxss1:i386 (1:1.2.2-1) ... Setting up libtk8.6:i386 (8.6.1-3ubuntu2) ... Setting up libunistring0:i386 (0.9.3-5ubuntu3) ... Setting up python2.7-minimal (2.7.8-10ubuntu1) ... Linking and byte-compiling packages for runtime python2.7... Setting up file (1:5.19-1ubuntu1.1) ... Setting up gettext-base (0.19.2-2ubuntu1) ... Setting up xml-core (0.13+nmu2) ... Setting up python2.7 (2.7.8-10ubuntu1) ... Setting up python-minimal (2.7.8-1) ... Setting up libpython-stdlib:i386 (2.7.8-1) ... Setting up python (2.7.8-1) ... Setting up cython (0.21.1-1) ... Setting up gettext (0.19.2-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.98-0ubuntu2) ... Setting up debhelper (9.20141003ubuntu1) ... Setting up fonts-lyx (2.0.6-1build2) ... Setting up libblas3 (1.2.20110419-7ubuntu1) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libjs-jquery (1.7.2+dfsg-3ubuntu2) ... Setting up libjs-jquery-ui (1.10.1+dfsg-1) ... Setting up libjs-underscore (1.4.4-2ubuntu1) ... Setting up libjs-sphinxdoc (1.2.2+dfsg-1ubuntu2) ... Setting up liblapack3 (3.5.0-4) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libpython-dev:i386 (2.7.8-1) ... Setting up libpython-all-dev:i386 (2.7.8-1) ... Setting up python-all (2.7.8-1) ... Setting up python2.7-dev (2.7.8-10ubuntu1) ... Setting up python-dev (2.7.8-1) ... Setting up python-all-dev (2.7.8-1) ... Setting up python-dateutil (1.5+dfsg-1ubuntu1) ... Setting up python-decorator (3.4.0-2build1) ... Setting up python-roman (2.0.0-1) ... Setting up python-markupsafe (0.23-1) ... Setting up python-jinja2 (2.7.3-1) ... Setting up python-matplotlib-data (1.3.1-2ubuntu1) ... Setting up python-pyparsing (2.0.3+dfsg1-1) ... Setting up python-tz (2012c-1build1) ... Setting up python-numpy (1:1.8.2-1ubuntu1) ... Setting up python-support (1.0.15) ... Setting up python-matplotlib (1.3.1-2ubuntu1) ... Setting up python-pkg-resources (5.5.1-1) ... Setting up python-nose (1.3.4-1) ... Setting up python-pygments (1.6+dfsg-1ubuntu1) ... Setting up sphinx-common (1.2.2+dfsg-1ubuntu2) ... Setting up python-scipy (0.14.0-2ubuntu1) ... Setting up python-nibabel (1.3.0-2) ... Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up docutils-common (0.12+dfsg-1) ... Processing triggers for sgml-base (1.26+nmu4ubuntu1) ... Setting up python-docutils (0.12+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.2.2+dfsg-1ubuntu2) ... Processing triggers for libc-bin (2.19-10ubuntu2) ... Processing triggers for python-support (1.0.15) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-10ubuntu2 make_4.0-8 dpkg-dev_1.17.13ubuntu1 gcc-4.9_4.9.1-19ubuntu1 g++-4.9_4.9.1-19ubuntu1 binutils_2.24.90.20141023-1ubuntu1 libstdc++-4.9-dev_4.9.1-19ubuntu1 libstdc++6_4.9.1-19ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Wed Aug 13 20:20:45 2014 UTC using DSA key ID 75C024C8 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./dipy_0.7.1-2.dsc dpkg-source: info: extracting dipy in dipy-0.7.1 dpkg-source: info: unpacking dipy_0.7.1.orig.tar.gz dpkg-source: info: unpacking dipy_0.7.1.orig-doc-examples.tar.gz dpkg-source: info: unpacking dipy_0.7.1-2.debian.tar.xz dpkg-source: info: applying up_AE_test_fixup_i386 dpkg-source: info: applying deb_allow_older_cython dpkg-source: info: applying deb_no_sources_for_docs dpkg-buildpackage: source package dipy dpkg-buildpackage: source version 0.7.1-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build dipy-0.7.1 dpkg-buildpackage: host architecture i386 dpkg-source: info: using options from dipy-0.7.1/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ /usr/bin/fakeroot debian/rules clean dh --buildsystem=python_distutils clean dh_testdir -O--buildsystem=python_distutils dh_auto_clean -O--buildsystem=python_distutils running clean 'build/lib.linux-i686-2.7' does not exist -- can't clean it 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it debian/rules override_dh_clean make[1]: Entering directory '/build/buildd/dipy-0.7.1' : # I: Custom cleaning rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/build/buildd/dipy-0.7.1/doc' cd examples_built && rm -rf *.py *.rst *.png fig rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory Makefile:37: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory '/build/buildd/dipy-0.7.1/doc' dh_clean make[1]: Leaving directory '/build/buildd/dipy-0.7.1' debian/rules build-arch dh --buildsystem=python_distutils build-arch dh_testdir -a -O--buildsystem=python_distutils dh_auto_configure -a -O--buildsystem=python_distutils debian/rules override_dh_auto_build make[1]: Entering directory '/build/buildd/dipy-0.7.1' echo "D: HERE" D: HERE echo "2" | grep -q '^3' && PY=3 || PY= ; \ CYTHONVER=$(dpkg -l cython$PY 2>/dev/null | awk '/^ii/{print $3;}' || echo 0); \ dpkg --compare-versions "$CYTHONVER" lt "0.17.3" && { \ echo "I: Using pre-Cython-ed files for Python 2"; \ cd debian/cythonized-files$PY/ ; \ find . -name *.c | while read f; do cp $f ../../$f; done; \ cp pyx-stamps ../../; } || : I: Using pre-Cython-ed files for Python 2 dh_auto_build running build running build_py creating build creating build/lib.linux-i686-2.7 creating build/lib.linux-i686-2.7/dipy copying dipy/__init__.py -> build/lib.linux-i686-2.7/dipy copying dipy/pkg_info.py -> build/lib.linux-i686-2.7/dipy copying dipy/info.py -> build/lib.linux-i686-2.7/dipy creating build/lib.linux-i686-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.linux-i686-2.7/dipy/tests creating build/lib.linux-i686-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.linux-i686-2.7/dipy/align copying dipy/align/aniso2iso.py -> build/lib.linux-i686-2.7/dipy/align creating build/lib.linux-i686-2.7/dipy/core copying dipy/core/rng.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/profile.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/graph.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.linux-i686-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.linux-i686-2.7/dipy/core creating build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/test_fetcher.py -> build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.linux-i686-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.linux-i686-2.7/dipy/core/tests creating build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/markov.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/gui_tools.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/interfaces.py -> build/lib.linux-i686-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.linux-i686-2.7/dipy/tracking creating build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_markov.py -> build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.linux-i686-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.linux-i686-2.7/dipy/tracking/tests creating build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/eit.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.linux-i686-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.linux-i686-2.7/dipy/reconst creating build/lib.linux-i686-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.linux-i686-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.linux-i686-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.linux-i686-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.linux-i686-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.linux-i686-2.7/dipy/reconst/benchmarks creating build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_eit.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peaks.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.linux-i686-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.linux-i686-2.7/dipy/reconst/tests creating build/lib.linux-i686-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.linux-i686-2.7/dipy/io copying dipy/io/utils.py -> build/lib.linux-i686-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.linux-i686-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.linux-i686-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.linux-i686-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.linux-i686-2.7/dipy/io creating build/lib.linux-i686-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.linux-i686-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.linux-i686-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.linux-i686-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.linux-i686-2.7/dipy/io/tests creating build/lib.linux-i686-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.linux-i686-2.7/dipy/viz copying dipy/viz/fvtk.py -> build/lib.linux-i686-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.linux-i686-2.7/dipy/viz copying dipy/viz/colormap.py -> build/lib.linux-i686-2.7/dipy/viz creating build/lib.linux-i686-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk.py -> build/lib.linux-i686-2.7/dipy/viz/tests creating build/lib.linux-i686-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.linux-i686-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.linux-i686-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.linux-i686-2.7/dipy/testing creating build/lib.linux-i686-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.linux-i686-2.7/dipy/testing/tests creating build/lib.linux-i686-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.linux-i686-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.linux-i686-2.7/dipy/boots creating build/lib.linux-i686-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.linux-i686-2.7/dipy/data creating build/lib.linux-i686-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.linux-i686-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.linux-i686-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.linux-i686-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.linux-i686-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.linux-i686-2.7/dipy/utils creating build/lib.linux-i686-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.linux-i686-2.7/dipy/utils/tests creating build/lib.linux-i686-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.linux-i686-2.7/dipy/fixes copying dipy/fixes/argparse.py -> build/lib.linux-i686-2.7/dipy/fixes creating build/lib.linux-i686-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.linux-i686-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.linux-i686-2.7/dipy/external creating build/lib.linux-i686-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/external/tests creating build/lib.linux-i686-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.linux-i686-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.linux-i686-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.linux-i686-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.linux-i686-2.7/dipy/segment creating build/lib.linux-i686-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.linux-i686-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.linux-i686-2.7/dipy/segment/tests creating build/lib.linux-i686-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.linux-i686-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.linux-i686-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.linux-i686-2.7/dipy/sims creating build/lib.linux-i686-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.linux-i686-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.linux-i686-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.linux-i686-2.7/dipy/sims/tests copying dipy/data/C1.pkl.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/func_discrete.nii.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_101D.bval -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/func_coef.nii.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/gtab_3shell.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/evenly_distributed_sphere_724.npz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_101D.bvec -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_25.bvec -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/gtab_taiwan_dsi.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_101D.nii.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/C3.pkl.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/eg_3voxels.pkl -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/ScannerVectors_GQI101.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_25.nii.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_64D.nii -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/S0_10slices.nii.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/fib0.pkl.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_25.bval -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/dsi515_b_table.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/55dir_grad.bval -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/fib1.pkl.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/evenly_distributed_sphere_642.npz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/aniso_vox.nii.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/sphere_grad.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/55dir_grad.bvec -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/dsi4169_b_table.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/fib2.pkl.gz -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_64D.bvals.npy -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/tracks300.trk -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/gtab_isbi2013_2shell.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/grad_514.txt -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/small_64D.gradients.npy -> build/lib.linux-i686-2.7/dipy/data copying dipy/data/evenly_distributed_sphere_362.npz -> build/lib.linux-i686-2.7/dipy/data running build_ext building 'dipy.reconst.recspeed' extension creating build/temp.linux-i686-2.7 creating build/temp.linux-i686-2.7/dipy creating build/temp.linux-i686-2.7/dipy/reconst i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -I/usr/include/python2.7 -c dipy/reconst/recspeed.c -o build/temp.linux-i686-2.7/dipy/reconst/recspeed.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/recspeed.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0, from dipy/reconst/recspeed.c:315: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: '_import_umath' defined but not used [-Wunused-function] _import_umath(void) ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-i686-2.7/dipy/reconst/recspeed.o -o build/lib.linux-i686-2.7/dipy/reconst/recspeed.so building 'dipy.reconst.vec_val_sum' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -I/usr/include/python2.7 -c dipy/reconst/vec_val_sum.c -o build/temp.linux-i686-2.7/dipy/reconst/vec_val_sum.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/vec_val_sum.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ dipy/reconst/vec_val_sum.c: In function '__pyx_pf_4dipy_7reconst_11vec_val_sum_vec_val_vect': dipy/reconst/vec_val_sum.c:1930:7: warning: variable '__pyx_t_15' set but not used [-Wunused-but-set-variable] int __pyx_t_15; ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/vec_val_sum.c:314: dipy/reconst/vec_val_sum.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: '_import_array' defined but not used [-Wunused-function] _import_array(void) ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0, from dipy/reconst/vec_val_sum.c:315: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: '_import_umath' defined but not used [-Wunused-function] _import_umath(void) ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-i686-2.7/dipy/reconst/vec_val_sum.o -o build/lib.linux-i686-2.7/dipy/reconst/vec_val_sum.so building 'dipy.reconst.quick_squash' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -I/usr/include/python2.7 -c dipy/reconst/quick_squash.c -o build/temp.linux-i686-2.7/dipy/reconst/quick_squash.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/quick_squash.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ dipy/reconst/quick_squash.c: In function '__pyx_pf_4dipy_7reconst_12quick_squash_quick_squash': dipy/reconst/quick_squash.c:2452:15: warning: assignment from incompatible pointer type *__pyx_t_18 = __pyx_v_dtype; ^ dipy/reconst/quick_squash.c:2733:19: warning: assignment from incompatible pointer type *__pyx_t_18 = __pyx_v_dtype; ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/quick_squash.c:314: dipy/reconst/quick_squash.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: '_import_array' defined but not used [-Wunused-function] _import_array(void) ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0, from dipy/reconst/quick_squash.c:315: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: '_import_umath' defined but not used [-Wunused-function] _import_umath(void) ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-i686-2.7/dipy/reconst/quick_squash.o -o build/lib.linux-i686-2.7/dipy/reconst/quick_squash.so building 'dipy.tracking.distances' extension creating build/temp.linux-i686-2.7/dipy/tracking i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -I/usr/include/python2.7 -c dipy/tracking/distances.c -o build/temp.linux-i686-2.7/dipy/tracking/distances.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/distances.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/distances.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: '_import_array' defined but not used [-Wunused-function] _import_array(void) ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0, from dipy/tracking/distances.c:315: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: '_import_umath' defined but not used [-Wunused-function] _import_umath(void) ^ dipy/tracking/distances.c: In function '__pyx_f_4dipy_8tracking_9distances_czhang': dipy/tracking/distances.c:7689:3: warning: '__pyx_v_dist_val' may be used uninitialized in this function [-Wmaybe-uninitialized] return __pyx_r; ^ dipy/tracking/distances.c: In function '__pyx_pf_4dipy_8tracking_9distances_14cut_plane.isra.35': dipy/tracking/distances.c:2664:59: warning: '*((void *)&__pyx_v_normal+8)' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ^ dipy/tracking/distances.c:3812:9: note: '*((void *)&__pyx_v_normal+8)' was declared here float __pyx_v_normal[3]; ^ dipy/tracking/distances.c:2664:59: warning: '*((void *)&__pyx_v_normal+4)' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ^ dipy/tracking/distances.c:3812:9: note: '*((void *)&__pyx_v_normal+4)' was declared here float __pyx_v_normal[3]; ^ dipy/tracking/distances.c:2664:59: warning: '__pyx_v_normal' may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ^ dipy/tracking/distances.c:3812:9: note: '__pyx_v_normal' was declared here float __pyx_v_normal[3]; ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-i686-2.7/dipy/tracking/distances.o -o build/lib.linux-i686-2.7/dipy/tracking/distances.so building 'dipy.tracking.vox2track' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -I/usr/include/python2.7 -c dipy/tracking/vox2track.c -o build/temp.linux-i686-2.7/dipy/tracking/vox2track.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/vox2track.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/vox2track.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: '_import_array' defined but not used [-Wunused-function] _import_array(void) ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0, from dipy/tracking/vox2track.c:315: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: '_import_umath' defined but not used [-Wunused-function] _import_umath(void) ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-i686-2.7/dipy/tracking/vox2track.o -o build/lib.linux-i686-2.7/dipy/tracking/vox2track.so building 'dipy.tracking.propspeed' extension i686-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -Isrc -I/usr/include/python2.7 -c dipy/tracking/propspeed.c -o build/temp.linux-i686-2.7/dipy/tracking/propspeed.o In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1761:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/propspeed.c:314: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:327:0, from dipy/tracking/propspeed.c:315: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: '_import_umath' defined but not used [-Wunused-function] _import_umath(void) ^ dipy/tracking/propspeed.c: In function '__pyx_pw_4dipy_8tracking_9propspeed_5eudx_both_directions': dipy/tracking/propspeed.c:3481:10: warning: '__pyx_v_ftmp' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!__pyx_t_1) { ^ dipy/tracking/propspeed.c:3142:10: note: '__pyx_v_ftmp' was declared here double __pyx_v_ftmp; ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-i686-2.7/dipy/tracking/propspeed.o -o build/lib.linux-i686-2.7/dipy/tracking/propspeed.so running build_scripts creating build/scripts-2.7 copying and adjusting bin/dipy_peak_extraction -> build/scripts-2.7 copying and adjusting bin/dipy_fit_tensor -> build/scripts-2.7 copying and adjusting bin/dipy_sh_estimate -> build/scripts-2.7 copying and adjusting bin/dipy_quickbundles -> build/scripts-2.7 changing mode of build/scripts-2.7/dipy_peak_extraction from 664 to 775 changing mode of build/scripts-2.7/dipy_fit_tensor from 664 to 775 changing mode of build/scripts-2.7/dipy_sh_estimate from 664 to 775 changing mode of build/scripts-2.7/dipy_quickbundles from 664 to 775 echo "backend : Agg" >| build/matplotlibrc make[1]: Leaving directory '/build/buildd/dipy-0.7.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/buildd/dipy-0.7.1' : # Do not test just after build, lets install and then test make[1]: Leaving directory '/build/buildd/dipy-0.7.1' /usr/bin/fakeroot debian/rules binary-arch dh --buildsystem=python_distutils binary-arch dh_testroot -a -O--buildsystem=python_distutils dh_prep -a -O--buildsystem=python_distutils debian/rules override_dh_auto_install make[1]: Entering directory '/build/buildd/dipy-0.7.1' dh_auto_install running install running build running build_py running build_ext running build_scripts running install_lib creating /build/buildd/dipy-0.7.1/debian/tmp creating /build/buildd/dipy-0.7.1/debian/tmp/usr creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7 creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-i686-2.7/dipy/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-i686-2.7/dipy/COMMIT_INFO.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-i686-2.7/dipy/boots/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-i686-2.7/dipy/boots/resampling.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/markov.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/_utils.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/utils.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/distances.so -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/eudx.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/vox2track.so -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/gui_tools.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/metrics.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/interfaces.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/test_propagation.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/test_distances.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/test_track_volumes.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/test_metrics.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/test_markov.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/test_learning.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/tests/test_utils.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-i686-2.7/dipy/tracking/learning.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-i686-2.7/dipy/tracking/propspeed.so -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-i686-2.7/dipy/align/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-i686-2.7/dipy/align/aniso2iso.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-i686-2.7/dipy/sims/phantom.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-i686-2.7/dipy/sims/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-i686-2.7/dipy/sims/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-i686-2.7/dipy/sims/tests/test_phantom.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-i686-2.7/dipy/sims/tests/test_voxel.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-i686-2.7/dipy/sims/voxel.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-i686-2.7/dipy/io/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-i686-2.7/dipy/io/utils.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-i686-2.7/dipy/io/gradients.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-i686-2.7/dipy/io/bvectxt.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-i686-2.7/dipy/io/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-i686-2.7/dipy/io/tests/test_bvectxt.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-i686-2.7/dipy/io/tests/test_io.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-i686-2.7/dipy/io/tests/test_dpy.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-i686-2.7/dipy/io/tests/test_io_gradients.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-i686-2.7/dipy/io/dpy.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-i686-2.7/dipy/io/pickles.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-i686-2.7/dipy/pkg_info.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-i686-2.7/dipy/viz/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-i686-2.7/dipy/viz/fvtk.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-i686-2.7/dipy/viz/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-i686-2.7/dipy/viz/tests/test_fvtk.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-i686-2.7/dipy/viz/projections.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-i686-2.7/dipy/viz/colormap.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-i686-2.7/dipy/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-i686-2.7/dipy/tests/test_scripts.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/rng.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/geometry.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/sphere_stats.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/gradients.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/profile.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/graph.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/sphere.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/test_subdivide_octahedron.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/test_fetcher.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/test_ndindex.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/test_sphere.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/test_gradients.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/test_geometry.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/tests/test_graph.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-i686-2.7/dipy/core/onetime.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/ndindex.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/core/subdivide_octahedron.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-i686-2.7/dipy/info.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-i686-2.7/dipy/fixes/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-i686-2.7/dipy/fixes/argparse.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-i686-2.7/dipy/utils/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-i686-2.7/dipy/utils/six.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-i686-2.7/dipy/utils/optpkg.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-i686-2.7/dipy/utils/tripwire.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-i686-2.7/dipy/utils/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-i686-2.7/dipy/utils/tests/test_arrfuncs.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-i686-2.7/dipy/utils/arrfuncs.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-i686-2.7/dipy/external/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-i686-2.7/dipy/external/fsl.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-i686-2.7/dipy/external/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/base.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/shm.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/cache.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/multi_voxel.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/dsi.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/shore.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/vec_val_sum.so -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/gqi.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/interpolate.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/eit.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/dti.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-i686-2.7/dipy/reconst/benchmarks/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-i686-2.7/dipy/reconst/benchmarks/bench_vec_val_sum.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-i686-2.7/dipy/reconst/benchmarks/bench_peaks.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-i686-2.7/dipy/reconst/benchmarks/bench_bounding_box.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-i686-2.7/dipy/reconst/benchmarks/bench_squash.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-i686-2.7/dipy/reconst/peaks.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_cache.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_gqi.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_shm.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_shore_metrics.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_eit.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_vec_val_vect.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_peaks.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_interpolate.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_dsi.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_dti.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_odf.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_reco_utils.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_peak_finding.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_csdeconv.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_multi_voxel.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_dsi_metrics.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_dsi_deconv.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/tests/test_shore_odf.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-i686-2.7/dipy/reconst/recspeed.so -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/csdeconv.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/odf.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-i686-2.7/dipy/reconst/quick_squash.so -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/C1.pkl.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/func_discrete.nii.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/fetcher.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_101D.bval -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/func_coef.nii.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/gtab_3shell.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/evenly_distributed_sphere_724.npz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_101D.bvec -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_25.bvec -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/gtab_taiwan_dsi.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_101D.nii.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/C3.pkl.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/eg_3voxels.pkl -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/ScannerVectors_GQI101.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_25.nii.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_64D.nii -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/S0_10slices.nii.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/fib0.pkl.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_25.bval -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/dsi515_b_table.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/55dir_grad.bval -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/fib1.pkl.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/evenly_distributed_sphere_642.npz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/aniso_vox.nii.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/sphere_grad.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/55dir_grad.bvec -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/dsi4169_b_table.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/fib2.pkl.gz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_64D.bvals.npy -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/tracks300.trk -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/gtab_isbi2013_2shell.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/grad_514.txt -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/small_64D.gradients.npy -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-i686-2.7/dipy/data/evenly_distributed_sphere_362.npz -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-i686-2.7/dipy/segment/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-i686-2.7/dipy/segment/quickbundles.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-i686-2.7/dipy/segment/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-i686-2.7/dipy/segment/tests/test_qb.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-i686-2.7/dipy/segment/tests/test_mask.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-i686-2.7/dipy/segment/mask.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-i686-2.7/dipy/segment/threshold.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-i686-2.7/dipy/testing/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-i686-2.7/dipy/testing/spherepoints.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-i686-2.7/dipy/testing/tests/__init__.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-i686-2.7/dipy/testing/tests/test_decorators.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-i686-2.7/dipy/testing/decorators.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing running install_scripts creating /build/buildd/dipy-0.7.1/debian/tmp/usr/bin copying build/scripts-2.7/dipy_sh_estimate -> /build/buildd/dipy-0.7.1/debian/tmp/usr/bin copying build/scripts-2.7/dipy_peak_extraction -> /build/buildd/dipy-0.7.1/debian/tmp/usr/bin copying build/scripts-2.7/dipy_fit_tensor -> /build/buildd/dipy-0.7.1/debian/tmp/usr/bin copying build/scripts-2.7/dipy_quickbundles -> /build/buildd/dipy-0.7.1/debian/tmp/usr/bin changing mode of /build/buildd/dipy-0.7.1/debian/tmp/usr/bin/dipy_sh_estimate to 775 changing mode of /build/buildd/dipy-0.7.1/debian/tmp/usr/bin/dipy_peak_extraction to 775 changing mode of /build/buildd/dipy-0.7.1/debian/tmp/usr/bin/dipy_fit_tensor to 775 changing mode of /build/buildd/dipy-0.7.1/debian/tmp/usr/bin/dipy_quickbundles to 775 running install_data creating /build/buildd/dipy-0.7.1/debian/tmp/usr/share creating /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc creating /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy creating /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_length.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/brain_extraction_dwi.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa_parallel.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_quick_start.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_formats.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/restore_dti.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_quickbundles.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/probabilistic_tracking_odfs.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_gqi.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_odf.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd_parallel.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_multi_tensor.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/snr_in_cc.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore_metrics.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/gradients_spheres.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi_metrics.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_tools.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/quick_start.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsid.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_tensor.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reslice_datasets.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dti.py -> /build/buildd/dipy-0.7.1/debian/tmp/usr/share/doc/dipy/examples running install_egg_info Writing /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy-0.7.1.egg-info : # Prune duplicate LICENSE file find debian/ -name LICENSE -delete : # Only now lets build docs : # Copy pregenerated examples cp -rp doc-examples/doc/examples_built/* doc/examples_built/ export PYTHONPATH=$(/bin/ls -d /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/*-packages) \ MPLCONFIGDIR=/build/buildd/dipy-0.7.1/build HOME=/build/buildd/dipy-0.7.1/build; \ cd doc; /usr/bin/make html-after-examples make[2]: Entering directory '/build/buildd/dipy-0.7.1/doc' # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees . _build/html Making output directory... Running Sphinx v1.2.2 Initializing GitHub plugin loading pickled environment... not yet created loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : building [html]: targets for 109 source files that are out of date updating environment: 109 added, 0 changed, 0 removed reading sources... [ 0%] cite reading sources... [ 1%] dependencies reading sources... [ 2%] devel/commit_codes reading sources... [ 3%] devel/gitwash/configure_git reading sources... [ 4%] devel/gitwash/development_workflow reading sources... [ 5%] devel/gitwash/dot2_dot3 reading sources... [ 6%] devel/gitwash/following_latest reading sources... [ 7%] devel/gitwash/forking_hell reading sources... [ 8%] devel/gitwash/git_development reading sources... [ 9%] devel/gitwash/git_install reading sources... [ 10%] devel/gitwash/git_intro reading sources... [ 11%] devel/gitwash/git_resources reading sources... 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[100%] theory/spherical /build/buildd/dipy-0.7.1/doc/devel/make_release.rst:78: ERROR: Unknown target name: "nipy buildbot". /build/buildd/dipy-0.7.1/doc/devel/make_release.rst:80: ERROR: Unknown target name: "travis-ci". /build/buildd/dipy-0.7.1/doc/devel/make_release.rst:163: ERROR: Unknown target name: "pypi". /build/buildd/dipy-0.7.1/doc/devel/python3.rst:43: ERROR: Unknown interpreted text role "module". /build/buildd/dipy-0.7.1/doc/examples_built/gradients_spheres.rst:52: WARNING: Inline literal start-string without end-string. /build/buildd/dipy-0.7.1/doc/examples_built/reconst_shore_metrics.rst:131: WARNING: duplicate citation Descoteaux2011, other instance in /build/buildd/dipy-0.7.1/doc/examples_built/reconst_dsi_metrics.rst /build/buildd/dipy-0.7.1/doc/examples_built/reconst_shore_metrics.rst:135: WARNING: duplicate citation Wu2007, other instance in /build/buildd/dipy-0.7.1/doc/examples_built/reconst_dsi_metrics.rst /build/buildd/dipy-0.7.1/doc/examples_built/reconst_shore_metrics.rst:138: WARNING: duplicate citation Wu2008, other instance in /build/buildd/dipy-0.7.1/doc/examples_built/reconst_dsi_metrics.rst /build/buildd/dipy-0.7.1/doc/examples_built/simulate_multi_tensor.rst:89: WARNING: Literal block expected; none found. /build/buildd/dipy-0.7.1/doc/examples_built/snr_in_cc.rst:120: WARNING: Literal block expected; none found. /build/buildd/dipy-0.7.1/doc/examples_built/snr_in_cc.rst:180: WARNING: Literal block expected; none found. /build/buildd/dipy-0.7.1/doc/examples_built/snr_in_cc.rst:193: WARNING: Literal block expected; none found. /build/buildd/dipy-0.7.1/doc/examples_built/tracking_eudx_odf.rst:115: WARNING: duplicate citation Garyfallidis12, other instance in /build/buildd/dipy-0.7.1/doc/examples_built/segment_quickbundles.rst /build/buildd/dipy-0.7.1/doc/examples_built/tracking_eudx_tensor.rst:160: WARNING: duplicate citation Garyfallidis12, other instance in /build/buildd/dipy-0.7.1/doc/examples_built/tracking_eudx_odf.rst /build/buildd/dipy-0.7.1/doc/examples_built/tracking_quick_start.rst:191: WARNING: duplicate citation Garyfallidis12, other instance in /build/buildd/dipy-0.7.1/doc/examples_built/tracking_eudx_tensor.rst /build/buildd/dipy-0.7.1/doc/gimbal_lock.rst:27: WARNING: image file not readable: images/spitfire_0.png /build/buildd/dipy-0.7.1/doc/gimbal_lock.rst:32: WARNING: image file not readable: images/spitfire_x.png /build/buildd/dipy-0.7.1/doc/gimbal_lock.rst:37: WARNING: image file not readable: images/spitfire_y.png /build/buildd/dipy-0.7.1/doc/gimbal_lock.rst:42: WARNING: image file not readable: images/spitfire_hoped.png /build/buildd/dipy-0.7.1/doc/reference/dipy.core.gradients.rst:32: WARNING: toctree references unknown document u'reference/dipy.core.gradients.GradientTable.bvals' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.gradients.rst:32: WARNING: toctree references unknown document u'reference/dipy.core.gradients.GradientTable.bvecs' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.gradients.rst:32: WARNING: toctree references unknown document u'reference/dipy.core.gradients.GradientTable.b0s_mask' /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/gradients.py:docstring of dipy.core.gradients.GradientTable:30: WARNING: Explicit markup ends without a blank line; unexpected unindent. /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/gradients.py:docstring of dipy.core.gradients.GradientTable:34: ERROR: Malformed table. Column span alignment problem in table line 5. ============ ============= ========== gradients (N,3) ndarray diffusion gradients b0_threshold float Gradients with b-value less than or equal to `b0_threshold` are considered to not have diffusion weighting. ============ ============= ========== /build/buildd/dipy-0.7.1/doc/reference/dipy.core.gradients.rst:48: WARNING: toctree references unknown document u'reference/dipy.core.gradients.GradientTable.b0s_mask' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.gradients.rst:48: WARNING: toctree references unknown document u'reference/dipy.core.gradients.GradientTable.bvals' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.gradients.rst:48: WARNING: toctree references unknown document u'reference/dipy.core.gradients.GradientTable.bvecs' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.add_edge' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.add_node' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.all_paths' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.children' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.del_node' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.del_node_and_edges' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.down' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.down_short' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.parents' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.shortest_path' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.up' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.graph.rst:18: WARNING: toctree references unknown document u'reference/dipy.core.graph.Graph.up_short' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.profile.rst:57: WARNING: toctree references unknown document u'reference/dipy.core.profile.Profiler.print_stats' [u'LEcuyer()', u':module: dipy.core.rng', u'', u'', u'', u'Generate uniformly distributed random numbers using the 32-bit', u'generator from figure 3 of:', u" L'Ecuyer, P. Efficient and portable combined random number", u' generators, C.A.C.M., vol. 31, 742-749 & 774-?, June 1988.', u'', u'The cycle length is claimed to be 2.30584E+18']:5: ERROR: Unexpected indentation. /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:48: WARNING: toctree references unknown document u'reference/dipy.core.sphere.Sphere.edges' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:48: WARNING: toctree references unknown document u'reference/dipy.core.sphere.Sphere.faces' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:48: WARNING: toctree references unknown document u'reference/dipy.core.sphere.Sphere.subdivide' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:48: WARNING: toctree references unknown document u'reference/dipy.core.sphere.Sphere.vertices' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:141: WARNING: toctree references unknown document u'reference/dipy.core.sphere.HemiSphere.edges' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:141: WARNING: toctree references unknown document u'reference/dipy.core.sphere.HemiSphere.faces' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:141: WARNING: toctree references unknown document u'reference/dipy.core.sphere.HemiSphere.from_sphere' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:141: WARNING: toctree references unknown document u'reference/dipy.core.sphere.HemiSphere.mirror' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:141: WARNING: toctree references unknown document u'reference/dipy.core.sphere.HemiSphere.subdivide' /build/buildd/dipy-0.7.1/doc/reference/dipy.core.sphere.rst:141: WARNING: toctree references unknown document u'reference/dipy.core.sphere.HemiSphere.vertices' [u"random_uniform_on_sphere(n=1, coords='xyz')", u':module: dipy.core.sphere_stats', u'', u'', u'', u'Random unit vectors from a uniform distribution on the sphere. ', u'', u'', u':Parameters:', u'', u' **n** : int', u'', u' Number of random vectors', u'', u" **coords** : {'xyz', 'radians', 'degrees'}", u'', u" 'xyz' for cartesian form", u" 'radians' for spherical form in rads", u" 'degrees' for spherical form in degrees", u'', u':Returns:', u'', u" **X** : array, shape (n,3) if coords='xyz' or shape (n,2) otherwise", u'', u' Uniformly distributed vectors on the unit sphere.', u'', u'.. rubric:: Notes', u'', u'', u'The uniform distribution on the sphere, parameterized by spherical', u'coordinates :math:`(\\theta, \\phi)`, should verify :math:`\\phi\\sim U[0,2\\pi]`, while ', u':math:`z=\\cos(\\theta)\\sim U[-1,1]`.', u'', u'.. rubric:: References', u'', u'.. [R3] http://mathworld.wolfram.com/SpherePointPicking.html.', u'', u'.. only:: latex', u'', u' [R3]_', u'', u'.. rubric:: Examples', u'', u'', u'>>> from dipy.core.sphere_stats import random_uniform_on_sphere', u">>> X = random_uniform_on_sphere(4, 'radians')", u'>>> X.shape', u'(4, 2)', u">>> X = random_uniform_on_sphere(4, 'xyz')", u'>>> X.shape', u'(4, 3)']:31: WARNING: duplicate citation R3, other instance in /build/buildd/dipy-0.7.1/doc/reference/dipy.boots.resampling.rst /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.dti.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.dti.TensorModel.fit' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.maskedview.rst:4: WARNING: autodoc: failed to import module u'dipy.reconst.maskedview'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 335, in import_object __import__(self.modname) ImportError: No module named maskedview /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.modelarray.rst:4: WARNING: autodoc: failed to import module u'dipy.reconst.modelarray'; the following exception was raised: Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/sphinx/ext/autodoc.py", line 335, in import_object __import__(self.modname) ImportError: No module named modelarray /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.__call__' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.all' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.any' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.argmax' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.argmin' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.argpartition' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.argsort' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.astype' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.byteswap' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.choose' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.clip' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.compress' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.conj' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.conjugate' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.copy' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.cumprod' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.cumsum' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.diagonal' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.dot' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.dump' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.dumps' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.fill' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.flatten' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.getfield' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.item' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.itemset' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.max' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.mean' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.min' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.newbyteorder' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.nonzero' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.partition' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.prod' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.ptp' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.put' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.ravel' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.repeat' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.reshape' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.resize' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.round' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.searchsorted' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.setfield' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.setflags' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.sort' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.squeeze' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.std' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document u'reference/dipy.reconst.multi_voxel.CallableArray.sum' /build/buildd/dipy-0.7.1/doc/reference/dipy.reconst.multi_voxel.rst:18: WARNING: toctree references unknown document 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[ 76%] /build/buildd/dipy-0.7.1/doc/examples_built/brain_extraction_dwi.py copying downloadable files... [ 80%] /build/buildd/dipy-0.7.1/doc/examples_built/tracking_quick_start.py copying downloadable files... [ 84%] /build/buildd/dipy-0.7.1/doc/examples_built/tracking_eudx_tensor.py copying downloadable files... [ 88%] /build/buildd/dipy-0.7.1/doc/examples_built/reconst_dsi.py copying downloadable files... [ 92%] /build/buildd/dipy-0.7.1/doc/examples_built/snr_in_cc.py copying downloadable files... [ 96%] /build/buildd/dipy-0.7.1/doc/examples_built/restore_dti.py copying downloadable files... [100%] /build/buildd/dipy-0.7.1/doc/examples_built/segment_quickbundles.py copying static files... done copying extra files... done dumping search index... done dumping object inventory... done build succeeded, 622 warnings. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/buildd/dipy-0.7.1/doc' rm doc/_build/html/_static/jquery.js rm -r doc/_build/html/_sources rm: cannot remove 'doc/_build/html/_sources': No such file or directory debian/rules:68: recipe for target 'override_dh_auto_install' failed make[1]: [override_dh_auto_install] Error 1 (ignored) : # objects inventory is of no use for the package rm doc/_build/html/objects.inv : # Run tests later on : # cd build to prevent use of local/not-built source tree cd build; \ for PYTHON in python2.7; do \ echo "I: Running Dipy unittests using $PYTHON"; \ PATH=/build/buildd/dipy-0.7.1/debian/tmp/usr/bin:$PATH \ PYTHONPATH=$(/bin/ls -d /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/$PYTHON/*-packages) \ MPLCONFIGDIR=/tmp/ \ $PYTHON /usr/bin/nosetests -sv --exclude test_peaksFromModelParallel dipy; \ done I: Running Dipy unittests using python2.7 dipy.core.tests.test_fetcher.test_fetch_data ... ok dipy.core.tests.test_geometry.test_vector_norm ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.22464680e-16, 7.07106781e-01, ... ok dipy.core.tests.test_geometry.test_sphere_cart(array([ 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.27363267e-15, 7.35391052e+00, ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(0.5), array(0.4999999999999999), array(0.7071067811865476)), array([ 0.5 , 0.5 , 0.70710678])) ... ok dipy.core.tests.test_geometry.test_invert_transform(array([ 0. , 0.03141593, 0.06283185, 0.09424778, 0.12566371, ... ok dipy.core.tests.test_geometry.test_invert_transform(array([-3.14159265, -3.0787608 , -3.01592895, -2.95309709, -2.89026524, ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[1, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0. , 0. , 0. ], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_cart_distance(1.4142135623730951, 1.4142135623730951) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.0, 2) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.8284271247461903, 2.8284271247461903) ... ok dipy.core.tests.test_geometry.test_cart_distance(array([ 2.82842712, 4. ]), [2.8284271247461903, 4]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 2]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 1], 2.0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0, 0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.70710678118654746, 0.70710678118654746) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-0.99999999999999978, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(array([-1., 1.]), [-1, 1]) ... ok dipy.core.tests.test_geometry.test_vector_cosine(False,) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.2421804645420996, 0.24218046454209957) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_polar(array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.]), array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.])) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_cart(array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ]), array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ])) ... ok dipy.core.tests.test_geometry.test_circumradius(0.70710678118654757, 0.70710678118654757) ... ok dipy.core.tests.test_gradients.test_btable_prepare ... ok dipy.core.tests.test_gradients.test_GradientTable ... ok dipy.core.tests.test_gradients.test_gradient_table_from_bvals_bvecs ... ok dipy.core.tests.test_gradients.test_b0s ... ok dipy.core.tests.test_gradients.test_gtable_from_files ... ok dipy.core.tests.test_graph.test_graph ... ok dipy.core.tests.test_ndindex.test_ndindex ... ok dipy.core.tests.test_ndindex.test_ndindex_0d ... ok dipy.core.tests.test_sphere.test_sphere_construct_args ... ok dipy.core.tests.test_sphere.test_sphere_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_not_unit ... ok dipy.core.tests.test_sphere.test_bad_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_construct ... ok dipy.core.tests.test_sphere.test_unique_edges ... ok dipy.core.tests.test_sphere.test_unique_sets ... ok dipy.core.tests.test_sphere.test_faces_from_sphere_vertices ... ok dipy.core.tests.test_sphere.test_sphere_attrs ... ok dipy.core.tests.test_sphere.test_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_subdivide ... ok dipy.core.tests.test_sphere.test_hemisphere_subdivide ... ok dipy.core.tests.test_sphere.test_hemisphere_constructor ... ok dipy.core.tests.test_sphere.test_mirror ... ok dipy.core.tests.test_sphere.test_hemisphere_faces ... ok dipy.core.tests.test_sphere.test_get_force ... ok dipy.core.tests.test_sphere.test_disperse_charges ... ok dipy.core.tests.test_sphere.test_interp_rbf ... ok dipy.core.tests.test_subdivide_octahedron.test_create_unit_sphere ... ok dipy.io.tests.test_bvectxt.test_orientation_from_to_string ... ok dipy.io.tests.test_bvectxt.test_reorient_vectors ... ok dipy.io.tests.test_dpy.test_dpy ... SKIP: Skipping test: test_dpy: Pytables does not appear to be installed dipy.io.tests.test_io.test_imports ... ok dipy.io.tests.test_io_gradients.test_read_bvals_bvecs ... ok dipy.reconst.tests.test_cache.test_basic_cache ... ok dipy.reconst.tests.test_csdeconv.test_csdeconv ... ok dipy.reconst.tests.test_csdeconv.test_odfdeconv ... ok dipy.reconst.tests.test_csdeconv.test_odf_sh_to_sharp ... ok dipy.reconst.tests.test_csdeconv.test_forward_sdeconv_mat ... ok dipy.reconst.tests.test_csdeconv.test_r2_term_odf_sharp ... ok dipy.reconst.tests.test_dsi.test_dsi ... ok dipy.reconst.tests.test_dsi.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi_metrics.test_dsi_metrics ... ok Test that the computation of tensor determinant and norm is correct ... ok dipy.reconst.tests.test_dti.test_TensorModel ... ok dipy.reconst.tests.test_dti.test_indexing_on_TensorFit ... ok dipy.reconst.tests.test_dti.test_fa_of_zero ... ok dipy.reconst.tests.test_dti.test_diffusivities ... ok dipy.reconst.tests.test_dti.test_color_fa ... ok Tests the WLS and LS fitting functions to see if they returns the correct ... ok dipy.reconst.tests.test_dti.test_masked_array_with_Tensor ... ok dipy.reconst.tests.test_dti.test_fit_method_error ... ok dipy.reconst.tests.test_dti.test_lower_triangular ... ok dipy.reconst.tests.test_dti.test_from_lower_triangular ... ok dipy.reconst.tests.test_dti.test_all_constant ... ok dipy.reconst.tests.test_dti.test_mask ... ok dipy.reconst.tests.test_dti.test_nnls_jacobian_fucn ... ok Test the implementation of NLLS and RESTORE ... ok Test the implementation of the RESTORE algorithm ... ok Test the implementation of the calculation of apparent diffusion coefficient ... ok Test model prediction API ... /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:55: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:65: RuntimeWarning: invalid value encountered in true_divide ret, rcount, out=ret, casting='unsafe', subok=False) ok Failure: UnderConstruction () ... SKIP dipy.reconst.tests.test_gqi.test_gqi ... ok dipy.reconst.tests.test_gqi.test_mvoxel_gqi ... ok dipy.reconst.tests.test_interpolate.test_NearestNeighborInterpolator ... ok dipy.reconst.tests.test_interpolate.test_TriLinearInterpolator ... ok dipy.reconst.tests.test_multi_voxel.test_squash ... ok dipy.reconst.tests.test_multi_voxel.test_CallableArray ... ok dipy.reconst.tests.test_multi_voxel.test_multi_voxel_fit ... ok dipy.reconst.tests.test_odf.test_OdfFit ... ok dipy.reconst.tests.test_odf.test_minmax_normalize ... ok dipy.reconst.tests.test_peak_finding.test_local_maxima ... ok dipy.reconst.tests.test_peak_finding.test_remove_similar_peaks ... ok dipy.reconst.tests.test_peak_finding.test_search_descending ... ok dipy.reconst.tests.test_peaks.test_peak_directions_nl ... ok dipy.reconst.tests.test_peaks.test_OdfFit ... ok dipy.reconst.tests.test_peaks.test_peak_directions ... ok dipy.reconst.tests.test_peaks.test_peak_directions_thorough ... ok dipy.reconst.tests.test_peaks.test_difference_with_minmax ... ok dipy.reconst.tests.test_peaks.test_degenerative_cases ... ok dipy.reconst.tests.test_peaks.test_peaksFromModel ... ok dipy.reconst.tests.test_peaks.test_peaks_shm_coeff ... ok dipy.reconst.tests.test_peaks.test_reshape_peaks_for_visualization ... ok dipy.reconst.tests.test_reco_utils.test_adj_countarrs ... ok dipy.reconst.tests.test_reco_utils.test_argmax_from_countarrs ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestQballModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestQballModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.test_sph_harm_ind_list ... ok dipy.reconst.tests.test_shm.test_real_sph_harm ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_mrtrix ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_basis ... ok dipy.reconst.tests.test_shm.test_smooth_pinv ... ok dipy.reconst.tests.test_shm.test_normalize_data ... ok dipy.reconst.tests.test_shm.test_SphHarmFit ... ok dipy.reconst.tests.test_shm.test_hat_and_lcr ... ok dipy.reconst.tests.test_shm.test_bootstrap_array ... ok dipy.reconst.tests.test_shm.test_ResidualBootstrapWrapper ... ok dipy.reconst.tests.test_shm.test_sf_to_sh ... ok dipy.reconst.tests.test_shore_metrics.test_shore_metrics ... /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:128: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_shore_odf.test_shore_odf ... ok dipy.reconst.tests.test_shore_odf.test_multivox_shore ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect_dumber ... ok dipy.segment.tests.test_mask.test_mask ... ok dipy.segment.tests.test_mask.test_bounding_box ... ok dipy.segment.tests.test_mask.test_median_otsu ... ok dipy.segment.tests.test_qb.test_qbundles ... ok dipy.sims.tests.test_phantom.test_phantom ... ok dipy.sims.tests.test_phantom.test_add_noise ... ok dipy.sims.tests.test_voxel.test_sticks_and_ball ... ok dipy.sims.tests.test_voxel.test_single_tensor ... ok dipy.sims.tests.test_voxel.test_multi_tensor ... ok dipy.sims.tests.test_voxel.test_snr ... ok dipy.tracking.tests.test_distances.test_LSCv2 ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mam ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mdf ... ok dipy.tracking.tests.test_distances.test_mam_distances ... ok dipy.tracking.tests.test_distances.test_approx_ei_traj ... ok dipy.tracking.tests.test_distances.test_approx_mdl_traj ... ok dipy.tracking.tests.test_distances.test_point_track_sq_distance ... ok dipy.tracking.tests.test_distances.test_track_roi_intersection_check ... ok dipy.tracking.tests.test_distances.test_minimum_distance ... ok dipy.tracking.tests.test_distances.test_most_similar_mam ... ok dipy.tracking.tests.test_distances.test_cut_plane ... ok dipy.tracking.tests.test_learning.test_det_corr_tracks ... ok dipy.tracking.tests.test_markov.test_BoundaryStepper ... ok dipy.tracking.tests.test_markov.test_FixedSizeStepper ... ok dipy.tracking.tests.test_markov.test_markov_streamline ... ok dipy.tracking.tests.test_markov.test_MarkovIntegrator ... ok dipy.tracking.tests.test_markov.test_closest_peak ... ok dipy.tracking.tests.test_markov.test_ClosestDirectionTracker ... ok dipy.tracking.tests.test_markov.test_ProbabilisticOdfWeightedTracker ... ok dipy.tracking.tests.test_metrics.test_downsample ... ok dipy.tracking.tests.test_metrics.test_splines ... ok dipy.tracking.tests.test_metrics.test_segment_intersection ... ok dipy.tracking.tests.test_metrics.test_normalized_3vec ... ok dipy.tracking.tests.test_metrics.test_inner_3vecs ... ok dipy.tracking.tests.test_metrics.test_add_sub_3vecs ... ok dipy.tracking.tests.test_propagation.test_trilinear_interp_cubic_voxels ... ok Cause we love testin.. ;-) ... ok Test passing a bad seed to eudx ... ok dipy.tracking.tests.test_track_volumes.test_track_volumes ... ok dipy.tracking.tests.test_utils.test_density_map ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix ... ok dipy.tracking.tests.test_utils.test_ndbincount ... ok dipy.tracking.tests.test_utils.test_reduce_labels ... ok dipy.tracking.tests.test_utils.test_move_streamlines ... ok dipy.tracking.tests.test_utils.test_target ... ok dipy.tracking.tests.test_utils.test_voxel_ornt ... ok dipy.tracking.tests.test_utils.test_streamline_mapping ... ok dipy.tracking.tests.test_utils.test_rmi ... ok dipy.tracking.tests.test_utils.test_affine_for_trackvis ... ok dipy.tracking.tests.test_utils.test_length ... ok dipy.tracking.tests.test_utils.test_seeds_from_mask ... ok dipy.utils.tests.test_arrfuncs.test_as_native ... ok dipy.viz.tests.test_fvtk.test_fvtk_functions ... SKIP: Skipping test: test_fvtk_functions: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_ellipsoid ... SKIP: Skipping test: test_fvtk_ellipsoid: Test skipped due to test condition dipy.testing.tests.test_decorators.test_skipper ... ok dipy.tests.test_scripts.test_dipy_peak_extraction ... ok dipy.tests.test_scripts.test_dipy_fit_tensor ... ok dipy.tests.test_scripts.test_dipy_sh_estimate ... ok dipy.tests.test_scripts.test_dipy_fit_tensor_again ... ok dipy.tests.test_scripts.test_qb_commandline ... ok ---------------------------------------------------------------------- Ran 211 tests in 79.023s OK (SKIP=4) Downloading "testfile.txt" to /tmp/tmped5S6H Files successfully downloaded to /tmp/tmped5S6H Downloading "testfile.txt" to /tmp/tmped5S6H Files successfully downloaded to /tmp/tmped5S6H Downloading "testfile.txt" to /tmp/tmped5S6H B-values shape (7,) min 0.000000 max 1500.000000 B-vectors shape (7, 3) min 0.000000 max 1.000000 Nodes {'a': 5, 'c': 10, 'b': 6, 'd': 11} Successors {'a': {'b': True}, 'c': {'d': True}, 'b': {'c': True, 'd': True}, 'd': {}} Predecessors {'a': {}, 'c': {'b': True}, 'b': {'a': True}, 'd': {'c': True, 'b': True}} Paths above d [['d', 'c', 'b', 'a'], ['d', 'b', 'a']] Paths below a [['a', 'b', 'c', 'd'], ['a', 'b', 'd']] Shortest path above d ['d', 'b', 'a'] Shortest path below a ['a', 'b', 'd'] Deleting node b Nodes {'a': 5, 'c': 10, 'd': 11} Successors {'a': {'c': True, 'd': True}, 'c': {'d': True}, 'd': {}} Predecessors {'a': {}, 'c': {'a': True}, 'd': {'a': True, 'c': True}} 3 (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int32)) (array([[ 5.25406812e-02, -9.98618785e-01, 6.12323400e-17]]), array([ 0.02]), array([0])) (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int32)) 0.000243186950684 11 0.00499105453491 11 0.447916030884 165 lenT3 300 lenC 4 [[ 2.00658822] [ 2.05195689]] [[ 2.0065883 ] [ 2.05195697]] -------------- [[ 0. 0. 0.] [ 1. 0. 0.] [ 2. 0. 0.]] [[ 0. 0. 0.] [ 1. 0. 0.] [ 3. 0. 0.]] -------------- [[ 0. 1. 1.] [ 1. 0. 1.] [ 2. 3. -2.]] [[0 0 0] [1 1 1] [2 2 2]] [[1 0 0] [2 0 0] [3 0 0]] [[ 0 0 -1] [ 0 0 -2] [ 0 0 -3]] [[0 1] [1 0]] [[0 1] [1 0]] (6, 10, 10, 102) make[1]: Leaving directory '/build/buildd/dipy-0.7.1' dh_installdocs -a -O--buildsystem=python_distutils dh_installchangelogs -a -O--buildsystem=python_distutils debian/rules override_dh_pysupport make[1]: Entering directory '/build/buildd/dipy-0.7.1' : # I: Move libraries into the -lib and -lib-dbg packages find debian/python-dipy/ -iname *.so -delete || : # remove .so from indep pkg if present find: `debian/python-dipy/': No such file or directory find /build/buildd/dipy-0.7.1/debian/tmp/ -iname *.so | \ while read so; do \ d=$(dirname $so); \ if [ ${so%_d.so} = ${so} ]; then suf=""; else suf="-dbg"; fi; \ d=$(echo $d | sed -e "s,/build/buildd/dipy-0.7.1/debian/tmp/,debian/python-dipy-lib$suf/,g"); \ mkdir -p $d; echo "Moving $so under $d"; mv $so $d; \ done Moving /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/distances.so under debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking Moving /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/vox2track.so under debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking Moving /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/propspeed.so under debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking Moving /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/vec_val_sum.so under debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/reconst Moving /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/recspeed.so under debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/reconst Moving /build/buildd/dipy-0.7.1/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/quick_squash.so under debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/reconst dh_pysupport dh_pysupport: This program is deprecated, you should use dh_python2 instead. Migration guide: http://deb.li/dhs2p make[1]: Leaving directory '/build/buildd/dipy-0.7.1' dh_perl -a -O--buildsystem=python_distutils dh_link -a -O--buildsystem=python_distutils debian/rules override_dh_compress make[1]: Entering directory '/build/buildd/dipy-0.7.1' dh_compress -X.py -X.html -X.css -X.jpg -X.txt -X.js -X.json -X.rtc -X.par -X.bin -Xobjects.inv make[1]: Leaving directory '/build/buildd/dipy-0.7.1' dh_fixperms -a -O--buildsystem=python_distutils dh_strip -a -O--buildsystem=python_distutils dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: python-dipy-lib dh_strip debug symbol extraction: packages to act on: python-dipy-lib dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package python-dipy-lib: unused substitution variable ${python:Provides} dpkg-gencontrol: warning: package python-dipy-lib: unused substitution variable ${python:Depends} /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: warning: '/build/buildd/dipy-0.7.1/debian/python-dipy-lib-dbgsym/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `python-dipy-lib-dbgsym' in `../python-dipy-lib-dbgsym_0.7.1-2_i386.ddeb'. dh_makeshlibs -a -O--buildsystem=python_distutils dh_shlibdeps -a -O--buildsystem=python_distutils dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-dipy-lib/usr/lib/pyshared/python2.7/dipy/reconst/quick_squash.so debian/python-dipy-lib/usr/lib/pyshared/python2.7/dipy/tracking/vox2track.so debian/python-dipy-lib/usr/lib/pyshared/python2.7/dipy/reconst/recspeed.so debian/python-dipy-lib/usr/lib/pyshared/python2.7/dipy/reconst/vec_val_sum.so debian/python-dipy-lib/usr/lib/pyshared/python2.7/dipy/tracking/distances.so debian/python-dipy-lib/usr/lib/pyshared/python2.7/dipy/tracking/propspeed.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -a -O--buildsystem=python_distutils dh_gencontrol -a -O--buildsystem=python_distutils dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--buildsystem=python_distutils dh_builddeb -a -O--buildsystem=python_distutils INFO: pkgstriptranslations version 121 pkgstriptranslations: processing python-dipy-lib (in debian/python-dipy-lib); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-dipy-lib/DEBIAN/control, package python-dipy-lib, directory debian/python-dipy-lib pkgstripfiles: PNG optimization for package python-dipy-lib took 0 s dpkg-deb: warning: 'debian/python-dipy-lib/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: 'debian/python-dipy-lib/DEBIAN/control' contains user-defined field 'Python-Version' dpkg-deb: warning: ignoring 2 warnings about the control file(s) dpkg-deb: building package `python-dipy-lib' in `../python-dipy-lib_0.7.1-2_i386.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../dipy_0.7.1-2_i386.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build dipy-0.7.1 dpkg-source: info: using options from dipy-0.7.1/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20141024-1238 Publishing debug debs. chroot-autobuild/build/buildd/python-dipy-lib_0.7.1-2_i386.deb: new debian package, version 2.0. size 237226 bytes: control archive= 1142 bytes. 663 bytes, 18 lines control 769 bytes, 9 lines md5sums 192 bytes, 7 lines * postinst #!/bin/sh 195 bytes, 7 lines * prerm #!/bin/sh Package: python-dipy-lib Source: dipy Version: 0.7.1-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: NeuroDebian Team Installed-Size: 1091 Depends: python (<< 2.8), python (>= 2.7), python-support (>= 0.90.0), libc6 (>= 2.4) Provides: python2.7-dipy-lib Section: python Priority: optional Homepage: http://nipy.org/dipy Description: toolbox for analysis of MR diffusion imaging data -- extensions Dipy is a toolbox for the analysis of diffusion magnetic resonance imaging data. . This package provides architecture-dependent builds of the extensions. Python-Version: 2.7 chroot-autobuild/build/buildd/python-dipy-lib_0.7.1-2_i386.deb: drwxr-xr-x root/root 0 2014-10-24 12:38 ./ drwxr-xr-x root/root 0 2014-10-24 12:37 ./usr/ drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/lib/ drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/lib/pyshared/ drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/ drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/ drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/tracking/ -rw-r--r-- root/root 357348 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/tracking/distances.so -rw-r--r-- root/root 91844 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/tracking/vox2track.so -rw-r--r-- root/root 72676 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/tracking/propspeed.so drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/reconst/ -rw-r--r-- root/root 154084 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/reconst/vec_val_sum.so -rw-r--r-- root/root 221248 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/reconst/recspeed.so -rw-r--r-- root/root 162596 2014-10-24 12:38 ./usr/lib/pyshared/python2.7/dipy/reconst/quick_squash.so drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/share/ drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/share/python-support/ -rw-r--r-- root/root 347 2014-10-24 12:38 ./usr/share/python-support/python-dipy-lib.public drwxr-xr-x root/root 0 2014-10-24 12:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-10-24 12:38 ./usr/share/doc/python-dipy-lib/ -rw-r--r-- root/root 1157 2014-08-13 14:18 ./usr/share/doc/python-dipy-lib/changelog.Debian.gz -rw-r--r-- root/root 2044 2014-08-13 14:18 ./usr/share/doc/python-dipy-lib/copyright dipy_0.7.1-2_i386.changes: Format: 1.8 Date: Wed, 13 Aug 2014 10:18:32 -0400 Source: dipy Binary: python-dipy python-dipy-lib python-dipy-doc Architecture: i386 Version: 0.7.1-2 Distribution: vivid-proposed Urgency: medium Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Yaroslav Halchenko Description: python-dipy - toolbox for analysis of MR diffusion imaging data python-dipy-doc - toolbox for analysis of MR diffusion imaging data -- documentatio python-dipy-lib - toolbox for analysis of MR diffusion imaging data -- extensions Changes: dipy (0.7.1-2) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Fix DEP5 format specification * debian/control: - Set Vcs fields to anonscm.debian.org - Priority: optional * debian/blends, debian/upstream/metadata: Move publication data where they belong to . [ Yaroslav Halchenko ] * Exclude peaksFromModelParallel from testing for now due to obscure permission issue Checksums-Sha1: 1878dbc0bb5083903a320c89a20492b45ee70de8 237226 python-dipy-lib_0.7.1-2_i386.deb Checksums-Sha256: 58ea6ba337f5405ca1e7daaf05bf7f2896468c3ae575d81577510e3534f8bf5f 237226 python-dipy-lib_0.7.1-2_i386.deb Files: 43904ba0123ed7a9833e7dffce1490a5 237226 python optional python-dipy-lib_0.7.1-2_i386.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20141024-1238 Build needed 00:02:24, 112748k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6487700'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6487700/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6487700'] Unmounting chroot for build PACKAGEBUILD-6487700... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6487700'] Removing build PACKAGEBUILD-6487700