https://launchpad.net/ubuntu/+source/discosnp/1:2.6.2-2/+build/25601326 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-063 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_230~623~ubuntu20.04.1 python3-lpbuildd_230~623~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 18 Feb 05:13:15 ntpdate[504148]: adjust time server 10.211.37.1 offset -0.001015 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25601326 --image-type chroot /home/buildd/filecache-default/859743d4aa431be74cb50b11ddbd51d0d1ab094f Creating target for build PACKAGEBUILD-25601326 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25601326 Starting target for build PACKAGEBUILD-25601326 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25601326 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25601326 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25601326 Updating target for build PACKAGEBUILD-25601326 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 Packages [1312 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe riscv64 Packages [13.8 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5922 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 Packages [285 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [114 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 Packages [1096 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [482 kB] Fetched 24.1 MB in 47s (513 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-13-base libproc2-0 The following packages will be upgraded: adduser advancecomp apt bash binutils binutils-common binutils-riscv64-linux-gnu coreutils cpp cpp-12 dash debconf diffutils dpkg dpkg-dev e2fsprogs fakeroot g++ g++-12 gcc gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv grep hostname libacl1 libapt-pkg6.0 libasan8 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-12-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libkmod2 liblzma5 libmpfr6 libncurses6 libncursesw6 libp11-kit0 libpcre2-8-0 libperl5.36 libreadline8 libselinux1 libsemanage-common libsemanage2 libsqlite3-0 libss2 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libzstd1 linux-libc-dev logsave lsb-base lto-disabled-list ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.36 pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata xz-utils zlib1g 100 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 87.8 MB of archives. After this operation, 8030 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar/main riscv64 bash riscv64 5.2.15-2ubuntu1 [672 kB] Get:2 http://ftpmaster.internal/ubuntu lunar/main riscv64 coreutils riscv64 9.1-1ubuntu2 [1309 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc-bin riscv64 2.37-0ubuntu1 [550 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main riscv64 libcrypt-dev riscv64 1:4.4.33-2 [234 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc6-dev riscv64 2.37-0ubuntu1 [3134 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc-dev-bin riscv64 2.37-0ubuntu1 [18.8 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main riscv64 libcrypt1 riscv64 1:4.4.33-2 [93.4 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 linux-libc-dev riscv64 6.1.0-14.14 [1408 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc-13-base riscv64 13-20230215-1ubuntu2 [18.7 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgcc-s1 riscv64 13-20230215-1ubuntu2 [57.0 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libc6 riscv64 2.37-0ubuntu1 [2593 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblzma5 riscv64 5.4.1-0.2 [115 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main riscv64 libgcrypt20 riscv64 1.10.1-3ubuntu1 [503 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libstdc++6 riscv64 13-20230215-1ubuntu2 [782 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main riscv64 libacl1 riscv64 2.3.1-3 [15.7 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libaudit-common all 1:3.0.9-1 [5142 B] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libaudit1 riscv64 1:3.0.9-1 [44.0 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcap2 riscv64 1:2.66-3ubuntu2 [25.3 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main riscv64 libperl5.36 riscv64 5.36.0-7 [4197 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main riscv64 perl riscv64 5.36.0-7 [235 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main riscv64 perl-base riscv64 5.36.0-7 [1649 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main riscv64 perl-modules-5.36 all 5.36.0-7 [2984 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main riscv64 libdb5.3 riscv64 5.3.28+dfsg2-1 [691 kB] Get:24 http://ftpmaster.internal/ubuntu lunar/main riscv64 zlib1g riscv64 1:1.2.13.dfsg-1ubuntu4 [54.0 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main riscv64 debconf all 1.5.82 [125 kB] Get:26 http://ftpmaster.internal/ubuntu lunar/main riscv64 libssl3 riscv64 3.0.7-1ubuntu1 [1438 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libzstd1 riscv64 1.5.4+dfsg2-3 [308 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libkmod2 riscv64 30+20221128-1ubuntu1 [43.5 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpcre2-8-0 riscv64 10.42-1 [142 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libselinux1 riscv64 3.4-1build3 [71.3 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 systemd-sysv riscv64 252.5-2ubuntu1 [11.5 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 systemd riscv64 252.5-2ubuntu1 [2815 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsystemd-shared riscv64 252.5-2ubuntu1 [1568 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libatomic1 riscv64 13-20230215-1ubuntu2 [9426 B] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcryptsetup12 riscv64 2:2.6.1-1ubuntu1 [196 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main riscv64 libp11-kit0 riscv64 0.24.1-2ubuntu1 [196 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsystemd0 riscv64 252.5-2ubuntu1 [298 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libudev1 riscv64 252.5-2ubuntu1 [81.3 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libapt-pkg6.0 riscv64 2.5.6 [919 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 dpkg riscv64 1.21.20ubuntu2 [1352 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 dash riscv64 0.5.12-2ubuntu1 [81.8 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 diffutils riscv64 1:3.8-4 [167 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main riscv64 grep riscv64 3.8-5 [155 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main riscv64 hostname riscv64 3.23+nmu1ubuntu1 [10.5 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main riscv64 ncurses-bin riscv64 6.4-2 [177 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main riscv64 sed riscv64 4.9-1 [191 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main riscv64 ncurses-base all 6.4-2 [21.3 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main riscv64 sysvinit-utils riscv64 3.05-7ubuntu2 [27.3 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 lsb-base all 11.6 [4606 B] Get:50 http://ftpmaster.internal/ubuntu lunar/main riscv64 adduser all 3.129ubuntu1 [59.0 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpgv riscv64 2.2.40-1ubuntu2 [202 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgnutls30 riscv64 3.7.8-5ubuntu1 [897 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 apt riscv64 2.5.6 [1339 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 logsave riscv64 1.47.0-1ubuntu1 [13.7 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libext2fs2 riscv64 1.47.0-1ubuntu1 [197 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 e2fsprogs riscv64 1.47.0-1ubuntu1 [555 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main riscv64 libattr1 riscv64 1:2.5.1-4 [11.4 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsemanage-common all 3.4-1build3 [9808 B] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsemanage2 riscv64 3.4-1build3 [83.5 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main riscv64 libncurses6 riscv64 6.4-2 [93.3 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main riscv64 libncursesw6 riscv64 6.4-2 [126 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main riscv64 libtinfo6 riscv64 6.4-2 [90.6 kB] Get:63 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmpfr6 riscv64 4.2.0-1 [260 kB] Get:64 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 g++-12 riscv64 12.2.0-14ubuntu2 [9555 kB] Get:65 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc-12 riscv64 12.2.0-14ubuntu2 [16.3 MB] Get:66 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 cpp-12 riscv64 12.2.0-14ubuntu2 [8285 kB] Get:67 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcc1-0 riscv64 13-20230215-1ubuntu2 [45.7 kB] Get:68 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf0 riscv64 2.40-2ubuntu2 [87.2 kB] Get:69 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf-nobfd0 riscv64 2.40-2ubuntu2 [89.1 kB] Get:70 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.40-2ubuntu2 [819 kB] Get:71 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libbinutils riscv64 2.40-2ubuntu2 [459 kB] Get:72 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils riscv64 2.40-2ubuntu2 [2984 B] Get:73 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-common riscv64 2.40-2ubuntu2 [218 kB] Get:74 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgomp1 riscv64 13-20230215-1ubuntu2 [140 kB] Get:75 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libasan8 riscv64 13-20230215-1ubuntu2 [2647 kB] Get:76 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libstdc++-12-dev riscv64 12.2.0-14ubuntu2 [4961 kB] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgcc-12-dev riscv64 12.2.0-14ubuntu2 [2613 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc-12-base riscv64 12.2.0-14ubuntu2 [19.6 kB] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcom-err2 riscv64 1.47.0-1ubuntu1 [13.5 kB] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libss2 riscv64 1.47.0-1ubuntu1 [15.2 kB] Get:81 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libproc2-0 riscv64 2:4.0.2-3ubuntu1 [45.2 kB] Get:82 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 procps riscv64 2:4.0.2-3ubuntu1 [548 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/main riscv64 sensible-utils all 0.0.17+nmu1 [19.3 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main riscv64 readline-common all 8.2-1.3 [55.7 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main riscv64 libreadline8 riscv64 8.2-1.3 [131 kB] Get:86 http://ftpmaster.internal/ubuntu lunar/main riscv64 libsqlite3-0 riscv64 3.40.1-1 [583 kB] Get:87 http://ftpmaster.internal/ubuntu lunar/main riscv64 openssl riscv64 3.0.7-1ubuntu1 [1141 kB] Get:88 http://ftpmaster.internal/ubuntu lunar/main riscv64 tzdata all 2022g-2ubuntu1 [397 kB] Get:89 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 xz-utils riscv64 5.4.1-0.2 [266 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main riscv64 advancecomp riscv64 2.5-1 [216 kB] Get:91 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 g++ riscv64 4:12.2.0-3ubuntu1 [1108 B] Get:92 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc riscv64 4:12.2.0-3ubuntu1 [5178 B] Get:93 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 cpp riscv64 4:12.2.0-3ubuntu1 [27.8 kB] Get:94 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 dpkg-dev all 1.21.20ubuntu2 [1117 kB] Get:95 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libdpkg-perl all 1.21.20ubuntu2 [247 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/main riscv64 lto-disabled-list all 38 [12.3 kB] Get:97 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libfakeroot riscv64 1.31-1ubuntu1 [26.6 kB] Get:98 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 fakeroot riscv64 1.31-1ubuntu1 [68.0 kB] Get:99 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpg riscv64 2.2.40-1ubuntu2 [491 kB] Get:100 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpgconf riscv64 2.2.40-1ubuntu2 [119 kB] Get:101 http://ftpmaster.internal/ubuntu lunar/main riscv64 gpg-agent riscv64 2.2.40-1ubuntu2 [239 kB] Get:102 http://ftpmaster.internal/ubuntu lunar/main riscv64 pkgbinarymangler all 151 [16.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.8 MB in 21s (4158 kB/s) (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../bash_5.2.15-2ubuntu1_riscv64.deb ... Unpacking bash (5.2.15-2ubuntu1) over (5.2-1ubuntu2) ... Setting up bash (5.2.15-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu2_riscv64.deb ... Unpacking coreutils (9.1-1ubuntu2) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu2) ... (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../libc-bin_2.37-0ubuntu1_riscv64.deb ... Unpacking libc-bin (2.37-0ubuntu1) over (2.36-0ubuntu4) ... Setting up libc-bin (2.37-0ubuntu1) ... (Reading database ... 13011 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.33-2_riscv64.deb ... Unpacking libcrypt-dev:riscv64 (1:4.4.33-2) over (1:4.4.33-1) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25601326 riscv64 lunar-proposed -c chroot:build-PACKAGEBUILD-25601326 --arch=riscv64 --dist=lunar-proposed --nolog discosnp_2.6.2-2.dsc Initiating build PACKAGEBUILD-25601326 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-063.buildd +==============================================================================+ | discosnp 1:2.6.2-2 (riscv64) Sat, 18 Feb 2023 05:23:16 +0000 | +==============================================================================+ Package: discosnp Version: 1:2.6.2-2 Source Version: 1:2.6.2-2 Distribution: lunar-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25601326/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/discosnp-zHqKV3/resolver-7FSOzX' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- discosnp_2.6.2-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/discosnp-zHqKV3/discosnp-2.6.2' with '<>' I: NOTICE: Log filtering will replace 'build/discosnp-zHqKV3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3, cmake, libgatbcore-dev, libboost-dev, libhdf5-dev, zlib1g-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3, cmake, libgatbcore-dev, libboost-dev, libhdf5-dev, zlib1g-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [410 B] Get:5 copy:/<>/apt_archive ./ Packages [494 B] Fetched 1861 B in 1s (2707 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libboost-dev libboost1.74-dev libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgatbcore-dev libgatbcore3 libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu72 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtool libuchardet0 libuv1 libxml2 m4 man-db media-types po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make flit python3-build python3-tomli python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config libhdf5-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libboost-dev libboost1.74-dev libbrotli1 libcurl4 libcurl4-openssl-dev libdebhelper-perl libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libgatbcore-dev libgatbcore3 libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu72 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp25 libldap2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtool libuchardet0 libuv1 libxml2 m4 man-db media-types po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3.11 python3.11-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. 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[4734 B] Get:69 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libhdf5-103-1 riscv64 1.10.8+repack1-1ubuntu1 [1242 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libhdf5-cpp-103-1 riscv64 1.10.8+repack1-1ubuntu1 [121 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libhdf5-fortran-102 riscv64 1.10.8+repack1-1ubuntu1 [73.3 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libhdf5-hl-100 riscv64 1.10.8+repack1-1ubuntu1 [49.8 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libhdf5-hl-fortran-100 riscv64 1.10.8+repack1-1ubuntu1 [26.7 kB] Get:74 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libhdf5-hl-cpp-100 riscv64 1.10.8+repack1-1ubuntu1 [10.6 kB] Get:75 http://ftpmaster.internal/ubuntu lunar/main riscv64 zlib1g-dev riscv64 1:1.2.13.dfsg-1ubuntu4 [957 kB] Get:76 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libjpeg-turbo8 riscv64 2.1.5-2ubuntu1 [119 kB] Get:77 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libjpeg-turbo8-dev riscv64 2.1.5-2ubuntu1 [434 kB] Get:78 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libjpeg8 riscv64 8c-2ubuntu11 [2150 B] Get:79 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu11 [1486 B] Get:80 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libjpeg-dev riscv64 8c-2ubuntu11 [1484 B] Get:81 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libaec-dev riscv64 1.0.6-1 [44.2 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main riscv64 libssl-dev riscv64 3.0.7-1ubuntu1 [4411 kB] Get:83 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libhdf5-dev riscv64 1.10.8+repack1-1ubuntu1 [6172 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.1 MB in 21s (4001 kB/s) Selecting previously unselected package libpython3.11-minimal:riscv64. (Reading database ... 15147 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-4_riscv64.deb ... Unpacking libpython3.11-minimal:riscv64 (3.11.2-4) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.5.0-1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-4_riscv64.deb ... Unpacking python3.11-minimal (3.11.2-4) ... Setting up libpython3.11-minimal:riscv64 (3.11.2-4) ... Setting up libexpat1:riscv64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-4) ... Selecting previously unselected package python3-minimal. (Reading database ... 15461 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.11.2-1_riscv64.deb ... Unpacking python3-minimal (3.11.2-1) ... Selecting previously unselected package media-types. 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Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:riscv64 (7.87.0-2ubuntu2) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu11) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu11) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcurl4-openssl-dev:riscv64 (7.87.0-2ubuntu2) ... Setting up libhdf5-103-1:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-cpp-103-1:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up cmake (3.25.1-1) ... Setting up libhdf5-hl-100:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up debhelper (13.11.4ubuntu3) ... Setting up libhdf5-hl-cpp-100:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-fortran-102:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-hl-fortran-100:riscv64 (1.10.8+repack1-1ubuntu1) ... Setting up libhdf5-dev (1.10.8+repack1-1ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (252.5-2ubuntu1) ... Processing triggers for libc-bin (2.37-0ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any-amd64 arm64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.40-2ubuntu2 dpkg-dev_1.21.20ubuntu2 g++-12_12.2.0-14ubuntu2 gcc-12_12.2.0-14ubuntu2 libc6-dev_2.37-0ubuntu1 libstdc++-12-dev_12.2.0-14ubuntu2 libstdc++6_13-20230215-1ubuntu2 linux-libc-dev_6.1.0-14.14 Package versions: adduser_3.129ubuntu1 advancecomp_2.5-1 apt_2.5.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2.15-2ubuntu1 binutils_2.40-2ubuntu2 binutils-common_2.40-2ubuntu2 binutils-riscv64-linux-gnu_2.40-2ubuntu2 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1ubuntu2 cpp_4:12.2.0-3ubuntu1 cpp-12_12.2.0-14ubuntu2 dash_0.5.12-2ubuntu1 debconf_1.5.82 debhelper_13.11.4ubuntu3 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20230130 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.20ubuntu2 dpkg-dev_1.21.20ubuntu2 dwz_0.15-1 e2fsprogs_1.47.0-1ubuntu1 fakeroot_1.31-1ubuntu1 file_1:5.44-3 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-3ubuntu1 g++-12_12.2.0-14ubuntu2 gcc_4:12.2.0-3ubuntu1 gcc-12_12.2.0-14ubuntu2 gcc-12-base_12.2.0-14ubuntu2 gcc-13-base_13-20230215-1ubuntu2 gettext_0.21-11 gettext-base_0.21-11 gpg_2.2.40-1ubuntu2 gpg-agent_2.2.40-1ubuntu2 gpgconf_2.2.40-1ubuntu2 gpgv_2.2.40-1ubuntu2 grep_3.8-5 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hdf5-helpers_1.10.8+repack1-1ubuntu1 hostname_3.23+nmu1ubuntu1 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libapparmor1_3.0.8-1ubuntu1 libapt-pkg6.0_2.5.6 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1ubuntu1 libargon2-1_0~20171227-0.3 libasan8_13-20230215-1ubuntu2 libassuan0_2.5.5-5 libatomic1_13-20230215-1ubuntu2 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2ubuntu2 libblkid1_2.38.1-4ubuntu1 libboost-dev_1.74.0.3ubuntu7 libboost1.74-dev_1.74.0-18.1ubuntu3 libbrotli1_1.0.9-2build7 libbz2-1.0_1.0.8-5build1 libc-bin_2.37-0ubuntu1 libc-dev-bin_2.37-0ubuntu1 libc6_2.37-0ubuntu1 libc6-dev_2.37-0ubuntu1 libcap-ng0_0.8.3-1build1 libcap2_1:2.66-3ubuntu2 libcc1-0_13-20230215-1ubuntu2 libcom-err2_1.47.0-1ubuntu1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libcryptsetup12_2:2.6.1-1ubuntu1 libctf-nobfd0_2.40-2ubuntu2 libctf0_2.40-2ubuntu2 libcurl4_7.87.0-2ubuntu2 libcurl4-openssl-dev_7.87.0-2ubuntu2 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.11.4ubuntu3 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.20ubuntu2 libdw1_0.188-2.1 libelf1_0.188-2.1 libexpat1_2.5.0-1 libext2fs2_1.47.0-1ubuntu1 libfakeroot_1.31-1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libgatbcore-dev_1.4.2+dfsg-11 libgatbcore3_1.4.2+dfsg-11 libgcc-12-dev_12.2.0-14ubuntu2 libgcc-s1_13-20230215-1ubuntu2 libgcrypt20_1.10.1-3ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_13-20230215-1ubuntu2 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.8-5ubuntu1 libgomp1_13-20230215-1ubuntu2 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1build1 libhdf5-103-1_1.10.8+repack1-1ubuntu1 libhdf5-cpp-103-1_1.10.8+repack1-1ubuntu1 libhdf5-dev_1.10.8+repack1-1ubuntu1 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python3.11-minimal_3.11.2-4 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 systemd_252.5-2ubuntu1 systemd-sysv_252.5-2ubuntu1 sysvinit-utils_3.05-7ubuntu2 tar_1.34+dfsg-1.1 tzdata_2022g-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1ubuntu4 zlib1g-dev_1:1.2.13.dfsg-1ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: discosnp Binary: discosnp Architecture: any-amd64 arm64 mips64el ppc64el ia64 ppc64 riscv64 sparc64 alpha Version: 1:2.6.2-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://colibread.inria.fr/discosnp/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/discosnp Vcs-Git: https://salsa.debian.org/med-team/discosnp.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), dh-python, python3, cmake, libgatbcore-dev, libboost-dev, libhdf5-dev, zlib1g-dev Package-List: discosnp deb science optional arch=any-amd64,arm64,mips64el,ppc64el,ia64,ppc64,riscv64,sparc64,alpha Checksums-Sha1: 8658a569f07cf68056126a75398759d83ad7c5f0 1390275 discosnp_2.6.2.orig.tar.gz bb08f71f4806d6a08883de58467cf60c6fd49327 22424 discosnp_2.6.2-2.debian.tar.xz Checksums-Sha256: 06c3683b2aaa665daf43254b4d97a7d0516dcea1c551a72e17669f2d52ad1fd6 1390275 discosnp_2.6.2.orig.tar.gz 4cb3a200b94f37867c8d10fda02827375607af87704d22b64d2282b78623deed 22424 discosnp_2.6.2-2.debian.tar.xz Files: e6e7099629b69ead20a34f61e881aeb3 1390275 discosnp_2.6.2.orig.tar.gz fa693e9f19ea2a818eddb9e9d3fb8baf 22424 discosnp_2.6.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEI3pUsQKHKL8A7zH00Ot2KGX8XjYFAmPwBUIUHHNlcmdpb2Rq QGRlYmlhbi5vcmcACgkQ0Ot2KGX8XjYKYw//QdY26/fCzNZbnlkGtoJ9oJn6uN/t bdj+vjEqZ6SazBSCPbmU5gjAmFjo7q1UE3Jd0LV4QbsirNn68AkOZMAw3LMAETY4 Ze9LD8szX7yZ9OzdhASNAPzRS/Zm/mfzDxFaW0z99OqC3kLF4PaHJobP+C9epwys xlEa+lwwIuBaWPdwmJEzoN3cKVJvzTYdC3gQduzixUiCGhay9oUZ0yMtHjByLt1v bW3yf+tDlx85ufzCk4ZkQaD7hRmsO630R1MkzczMWtHlO+D2jjj5KwG5+95GTfq5 1mZxu/+2U7aiG/yHAAkol5pkyzELgBsvsiUZryPCiBxwIYHHxfWLhSR8UpxQkz7d 11U9sUMhLkLlISj+257Q26G1fmiMNuP2EDxR6TXrkjljD3cGr24J4grnOTzYEVpN kXNeRMdm+jYKFH8+F5jPE7rzkKvQKuK2e4JjPNvFIpK3MrOD9BbXjr2LmdkuPKuu kb21xUNcZlySd3Cj5xnXut3L86XXq+qi/eY8X4tiY4S8AaCCi8dyYOIY+eKJuG9+ 9mhZ5mb34wbIiixtKwGEUyjFoofNDowk9BO1w9u0JlVMYQSpWED6JXXO+DKnbh49 SwbJN2IOrXhaRtMwFhGD8fdZhew4aOLzEFwLJ/zjVulA7yFKwetuWqJfPk8LIotG MWE1KHdTlPcGQfY= =EcZL -----END PGP SIGNATURE----- gpgv: Signature made Fri Feb 17 22:52:50 2023 UTC gpgv: using RSA key 237A54B1028728BF00EF31F4D0EB762865FC5E36 gpgv: issuer "sergiodj@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./discosnp_2.6.2-2.dsc: no acceptable signature found dpkg-source: info: extracting discosnp in /<> dpkg-source: info: unpacking discosnp_2.6.2.orig.tar.gz dpkg-source: info: unpacking discosnp_2.6.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_gatb-core.patch dpkg-source: info: applying no_install_to_wrong_dir.patch dpkg-source: info: applying path_to_readme_file_names.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying adapt_test_scripts.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying shell_syntax.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25601326 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25601326 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25601326 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package discosnp dpkg-buildpackage: info: source version 1:2.6.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --with python3 dh_clean debian/rules binary-arch dh binary-arch --with python3 dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-riscv64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/riscv64-linux-gnu .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-riscv64-linux-gnu dh_auto_build -a cd obj-riscv64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles /<>/obj-riscv64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f tools/kissnp2/CMakeFiles/kissnp2.dir/build.make tools/kissnp2/CMakeFiles/kissnp2.dir/depend make -f tools/kissreads2/CMakeFiles/kissreads2.dir/build.make tools/kissreads2/CMakeFiles/kissreads2.dir/depend make -f tools/QHC/CMakeFiles/quick_hierarchical_clustering.dir/build.make tools/QHC/CMakeFiles/quick_hierarchical_clustering.dir/depend make -f tools/read_file_names/CMakeFiles/read_file_names.dir/build.make tools/read_file_names/CMakeFiles/read_file_names.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/kissnp2 /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/tools/kissnp2 /<>/obj-riscv64-linux-gnu/tools/kissnp2/CMakeFiles/kissnp2.dir/DependInfo.cmake --color= make -f tools/create_coverage_h5_file/CMakeFiles/create_coverage_h5_file.dir/build.make tools/create_coverage_h5_file/CMakeFiles/create_coverage_h5_file.dir/depend make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/QHC /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/tools/QHC /<>/obj-riscv64-linux-gnu/tools/QHC/CMakeFiles/quick_hierarchical_clustering.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/kissreads2 /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/tools/kissreads2 /<>/obj-riscv64-linux-gnu/tools/kissreads2/CMakeFiles/kissreads2.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/read_file_names /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/tools/read_file_names /<>/obj-riscv64-linux-gnu/tools/read_file_names/CMakeFiles/read_file_names.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' cd /<>/obj-riscv64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/tools/create_coverage_h5_file /<>/obj-riscv64-linux-gnu /<>/obj-riscv64-linux-gnu/tools/create_coverage_h5_file /<>/obj-riscv64-linux-gnu/tools/create_coverage_h5_file/CMakeFiles/create_coverage_h5_file.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f tools/QHC/CMakeFiles/quick_hierarchical_clustering.dir/build.make tools/QHC/CMakeFiles/quick_hierarchical_clustering.dir/build make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f tools/kissnp2/CMakeFiles/kissnp2.dir/build.make tools/kissnp2/CMakeFiles/kissnp2.dir/build make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f tools/read_file_names/CMakeFiles/read_file_names.dir/build.make tools/read_file_names/CMakeFiles/read_file_names.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' make -f tools/kissreads2/CMakeFiles/kissreads2.dir/build.make tools/kissreads2/CMakeFiles/kissreads2.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' make -f tools/create_coverage_h5_file/CMakeFiles/create_coverage_h5_file.dir/build.make tools/create_coverage_h5_file/CMakeFiles/create_coverage_h5_file.dir/build make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' make[3]: Entering directory '/<>/obj-riscv64-linux-gnu' [ 5%] Building CXX object tools/QHC/CMakeFiles/quick_hierarchical_clustering.dir/src/quick_hierarchical_clustering.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/QHC && /usr/bin/c++ -I/<>/tools/QHC/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/QHC/CMakeFiles/quick_hierarchical_clustering.dir/src/quick_hierarchical_clustering.cpp.o -MF CMakeFiles/quick_hierarchical_clustering.dir/src/quick_hierarchical_clustering.cpp.o.d -o CMakeFiles/quick_hierarchical_clustering.dir/src/quick_hierarchical_clustering.cpp.o -c /<>/tools/QHC/src/quick_hierarchical_clustering.cpp [ 15%] Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/Filter.cpp.o [ 15%] Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/Bubble.cpp.o [ 20%] Building CXX object tools/read_file_names/CMakeFiles/read_file_names.dir/src/get_read_file_names.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissnp2 && /usr/bin/c++ -I/<>/tools/kissnp2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissnp2/CMakeFiles/kissnp2.dir/src/Bubble.cpp.o -MF CMakeFiles/kissnp2.dir/src/Bubble.cpp.o.d -o CMakeFiles/kissnp2.dir/src/Bubble.cpp.o -c /<>/tools/kissnp2/src/Bubble.cpp cd /<>/obj-riscv64-linux-gnu/tools/read_file_names && /usr/bin/c++ -I/<>/tools/read_file_names/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/read_file_names/CMakeFiles/read_file_names.dir/src/get_read_file_names.cpp.o -MF CMakeFiles/read_file_names.dir/src/get_read_file_names.cpp.o.d -o CMakeFiles/read_file_names.dir/src/get_read_file_names.cpp.o -c /<>/tools/read_file_names/src/get_read_file_names.cpp cd /<>/obj-riscv64-linux-gnu/tools/kissnp2 && /usr/bin/c++ -I/<>/tools/kissnp2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissnp2/CMakeFiles/kissnp2.dir/src/Filter.cpp.o -MF CMakeFiles/kissnp2.dir/src/Filter.cpp.o.d -o CMakeFiles/kissnp2.dir/src/Filter.cpp.o -c /<>/tools/kissnp2/src/Filter.cpp [ 25%] Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o [ 30%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/Kissreads2.cpp.o [ 35%] Building CXX object tools/kissnp2/CMakeFiles/kissnp2.dir/src/main.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissnp2 && /usr/bin/c++ -I/<>/tools/kissnp2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissnp2/CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o -MF CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o.d -o CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o -c /<>/tools/kissnp2/src/Kissnp2.cpp cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/Kissreads2.cpp.o -MF CMakeFiles/kissreads2.dir/src/Kissreads2.cpp.o.d -o CMakeFiles/kissreads2.dir/src/Kissreads2.cpp.o -c /<>/tools/kissreads2/src/Kissreads2.cpp cd /<>/obj-riscv64-linux-gnu/tools/kissnp2 && /usr/bin/c++ -I/<>/tools/kissnp2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissnp2/CMakeFiles/kissnp2.dir/src/main.cpp.o -MF CMakeFiles/kissnp2.dir/src/main.cpp.o.d -o CMakeFiles/kissnp2.dir/src/main.cpp.o -c /<>/tools/kissnp2/src/main.cpp [ 40%] Building CXX object tools/create_coverage_h5_file/CMakeFiles/create_coverage_h5_file.dir/src/create_coverage_h5_file.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/create_coverage_h5_file && /usr/bin/c++ -I/<>/tools/create_coverage_h5_file/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/create_coverage_h5_file/CMakeFiles/create_coverage_h5_file.dir/src/create_coverage_h5_file.cpp.o -MF CMakeFiles/create_coverage_h5_file.dir/src/create_coverage_h5_file.cpp.o.d -o CMakeFiles/create_coverage_h5_file.dir/src/create_coverage_h5_file.cpp.o -c /<>/tools/create_coverage_h5_file/src/create_coverage_h5_file.cpp [ 45%] Linking CXX executable ../../bin/quick_hierarchical_clustering cd /<>/obj-riscv64-linux-gnu/tools/QHC && /usr/bin/cmake -E cmake_link_script CMakeFiles/quick_hierarchical_clustering.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/quick_hierarchical_clustering.dir/src/quick_hierarchical_clustering.cpp.o -o ../../bin/quick_hierarchical_clustering -L/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/riscv64-linux-gnu/hdf5/serial: -lgatbcore -lhdf5 -lz make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 45%] Built target quick_hierarchical_clustering [ 50%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/commons.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/commons.cpp.o -MF CMakeFiles/kissreads2.dir/src/commons.cpp.o.d -o CMakeFiles/kissreads2.dir/src/commons.cpp.o -c /<>/tools/kissreads2/src/commons.cpp [ 55%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/fragment.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/fragment.cpp.o -MF CMakeFiles/kissreads2.dir/src/fragment.cpp.o.d -o CMakeFiles/kissreads2.dir/src/fragment.cpp.o -c /<>/tools/kissreads2/src/fragment.cpp [ 60%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/fragment_index.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/fragment_index.cpp.o -MF CMakeFiles/kissreads2.dir/src/fragment_index.cpp.o.d -o CMakeFiles/kissreads2.dir/src/fragment_index.cpp.o -c /<>/tools/kissreads2/src/fragment_index.cpp [ 65%] Linking CXX executable ../../bin/read_file_names cd /<>/obj-riscv64-linux-gnu/tools/read_file_names && /usr/bin/cmake -E cmake_link_script CMakeFiles/read_file_names.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/read_file_names.dir/src/get_read_file_names.cpp.o -o ../../bin/read_file_names -L/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/riscv64-linux-gnu/hdf5/serial: -lgatbcore -lhdf5 -lz make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 65%] Built target read_file_names [ 70%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/interface_xhash.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/interface_xhash.cpp.o -MF CMakeFiles/kissreads2.dir/src/interface_xhash.cpp.o.d -o CMakeFiles/kissreads2.dir/src/interface_xhash.cpp.o -c /<>/tools/kissreads2/src/interface_xhash.cpp [ 75%] Linking CXX executable ../../bin/create_coverage_h5_file cd /<>/obj-riscv64-linux-gnu/tools/create_coverage_h5_file && /usr/bin/cmake -E cmake_link_script CMakeFiles/create_coverage_h5_file.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/create_coverage_h5_file.dir/src/create_coverage_h5_file.cpp.o -o ../../bin/create_coverage_h5_file -L/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/riscv64-linux-gnu/hdf5/serial: -lgatbcore -lhdf5 -lz make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 75%] Built target create_coverage_h5_file [ 80%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/main.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/main.cpp.o -MF CMakeFiles/kissreads2.dir/src/main.cpp.o.d -o CMakeFiles/kissreads2.dir/src/main.cpp.o -c /<>/tools/kissreads2/src/main.cpp [ 85%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/read_mapper.cpp.o [ 90%] Building CXX object tools/kissreads2/CMakeFiles/kissreads2.dir/src/outputs.cpp.o cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/read_mapper.cpp.o -MF CMakeFiles/kissreads2.dir/src/read_mapper.cpp.o.d -o CMakeFiles/kissreads2.dir/src/read_mapper.cpp.o -c /<>/tools/kissreads2/src/read_mapper.cpp cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/c++ -I/<>/tools/kissreads2/src -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MT tools/kissreads2/CMakeFiles/kissreads2.dir/src/outputs.cpp.o -MF CMakeFiles/kissreads2.dir/src/outputs.cpp.o.d -o CMakeFiles/kissreads2.dir/src/outputs.cpp.o -c /<>/tools/kissreads2/src/outputs.cpp [ 95%] Linking CXX executable ../../bin/kissnp2 cd /<>/obj-riscv64-linux-gnu/tools/kissnp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/kissnp2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/kissnp2.dir/src/Bubble.cpp.o CMakeFiles/kissnp2.dir/src/Filter.cpp.o CMakeFiles/kissnp2.dir/src/Kissnp2.cpp.o CMakeFiles/kissnp2.dir/src/main.cpp.o -o ../../bin/kissnp2 -L/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/riscv64-linux-gnu/hdf5/serial: -lgatbcore -lhdf5 -lz make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [ 95%] Built target kissnp2 [100%] Linking CXX executable ../../bin/kissreads2 cd /<>/obj-riscv64-linux-gnu/tools/kissreads2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/kissreads2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/discosnp-1:2.6.2-2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/kissreads2.dir/src/Kissreads2.cpp.o CMakeFiles/kissreads2.dir/src/commons.cpp.o CMakeFiles/kissreads2.dir/src/fragment.cpp.o CMakeFiles/kissreads2.dir/src/fragment_index.cpp.o CMakeFiles/kissreads2.dir/src/interface_xhash.cpp.o CMakeFiles/kissreads2.dir/src/main.cpp.o CMakeFiles/kissreads2.dir/src/outputs.cpp.o CMakeFiles/kissreads2.dir/src/read_mapper.cpp.o -o ../../bin/kissreads2 -L/usr/lib/riscv64-linux-gnu/hdf5/serial -Wl,-rpath,/usr/lib/riscv64-linux-gnu/hdf5/serial: -lgatbcore -lhdf5 -lz make[3]: Leaving directory '/<>/obj-riscv64-linux-gnu' [100%] Built target kissreads2 make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-riscv64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install --destdir=debian/discosnp/ -a cd obj-riscv64-linux-gnu && make -j8 install DESTDIR=/<>/debian/discosnp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-riscv64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-riscv64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-riscv64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-riscv64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/discosnp/usr/bin/kissnp2 -- Set runtime path of "/<>/debian/discosnp/usr/bin/kissnp2" to "" -- Installing: /<>/debian/discosnp/usr/bin/kissreads2 -- Set runtime path of "/<>/debian/discosnp/usr/bin/kissreads2" to "" -- Installing: /<>/debian/discosnp/usr/bin/quick_hierarchical_clustering -- Set runtime path of "/<>/debian/discosnp/usr/bin/quick_hierarchical_clustering" to "" -- Installing: /<>/debian/discosnp/usr/bin/read_file_names -- Set runtime path of "/<>/debian/discosnp/usr/bin/read_file_names" to "" -- Installing: /<>/debian/discosnp/usr/bin/create_coverage_h5_file -- Set runtime path of "/<>/debian/discosnp/usr/bin/create_coverage_h5_file" to "" make[1]: Leaving directory '/<>/obj-riscv64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install mkdir -p debian/discosnp/usr/lib/discosnp/bin mv debian/discosnp/usr/bin/read_file_names debian/discosnp/usr/lib/discosnp/bin mv debian/discosnp/usr/bin/quick_hierarchical_clustering debian/discosnp/usr/lib/discosnp/bin rm -rf debian/discosnp/usr/share/discosnp/scripts/jenkins make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman # dh_installman interprets .sh as language - just copy manpages manually cp -a debian/mans/*.sh.1 debian/discosnp/usr/share/man/man1 make[1]: Leaving directory '/<>' dh_python3 -a I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/create_filtered_vcf.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/vcf_formatting_functions.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/k3000/K3000_common.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/k3000/K3000_facts_to_gfa.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/k3000/K3000_filter_badly_overlapping_variants.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/k3000/K3000_node_ids_to_node_sequences.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/k3000/K3000_paths_to_fa.py I: dh_python3 tools:114: replacing shebang in debian/discosnp/usr/share/discosnp/scripts/k3000/K3000_phased_paths_to_fa.py dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/discosnp/usr/bin/create_coverage_h5_file: Unknown DWARF DW_FORM_0x1f21 1b92cc817a8b445a8e41e67d45dd176f93d96d27 debugedit: debian/discosnp/usr/bin/kissnp2: Unknown DWARF DW_FORM_0x1f20 23266b2baa78268c066d789e90feff351de1fa3e debugedit: debian/discosnp/usr/bin/kissreads2: Unknown DWARF DW_FORM_0x1f20 9a4bd7b0d46c260a7eeba1dfe09c36dfb73bdf8f debugedit: debian/discosnp/usr/lib/discosnp/bin/quick_hierarchical_clustering: Unknown DWARF DW_FORM_0x1f21 db1258b157e9f13293d3bcaec94b800a6d849b81 debugedit: debian/discosnp/usr/lib/discosnp/bin/read_file_names: Unknown DWARF DW_FORM_0x1f21 5dad9b773ab2351937b6fa2ceb53efe29f322912 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 151 INFO: pkgstriptranslations version 151 pkgstriptranslations: processing discosnp (in debian/discosnp); do_strip: , oemstrip: pkgstriptranslations: processing discosnp-dbgsym (in debian/.debhelper/discosnp/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/discosnp/DEBIAN/control, package discosnp, directory debian/discosnp pkgstripfiles: processing control file: debian/.debhelper/discosnp/dbgsym-root/DEBIAN/control, package discosnp-dbgsym, directory debian/.debhelper/discosnp/dbgsym-root dpkg-deb: building package 'discosnp-dbgsym' in 'debian/.debhelper/scratch-space/build-discosnp/discosnp-dbgsym_2.6.2-2_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package discosnp ... pkgstripfiles: No PNG files. dpkg-deb: building package 'discosnp' in '../discosnp_2.6.2-2_riscv64.deb'. Renaming discosnp-dbgsym_2.6.2-2_riscv64.deb to discosnp-dbgsym_2.6.2-2_riscv64.ddeb dpkg-genbuildinfo --build=any -O../discosnp_2.6.2-2_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../discosnp_2.6.2-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-02-18T05:44:06Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ discosnp_2.6.2-2_riscv64.changes: --------------------------------- Format: 1.8 Date: Fri, 17 Feb 2023 17:51:51 -0500 Source: discosnp Binary: discosnp Built-For-Profiles: noudeb Architecture: riscv64 Version: 1:2.6.2-2 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Sergio Durigan Junior Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Closes: 1031530 Changes: discosnp (1:2.6.2-2) unstable; urgency=medium . * Team upload. * d/control: Only build on architectures supported by gatb-core. (Closes: #1031530) * d/control: Bump Standards-Version to 4.6.2; no changes needed. 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Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: discosnp Binary: discosnp discosnp-dbgsym Architecture: riscv64 Version: 1:2.6.2-2 Checksums-Md5: 65c88bb6277576002c743d0543d08ff0 1825010 discosnp-dbgsym_2.6.2-2_riscv64.ddeb 963c2cd3fac02524f790f652b12ec5ec 1464416 discosnp_2.6.2-2_riscv64.deb Checksums-Sha1: d52fde38c648a01beca9d9aba8ffbf71c3e1f230 1825010 discosnp-dbgsym_2.6.2-2_riscv64.ddeb 09d9c0712f0e6e396a4f528193bf4d48aaddb937 1464416 discosnp_2.6.2-2_riscv64.deb Checksums-Sha256: 362c72c306c30fe5765bc248c26783bc59679ef1e031c63e3f3af217a87ce4ec 1825010 discosnp-dbgsym_2.6.2-2_riscv64.ddeb 32e05ad0c5ec7cb5d2a7a6337c75cde878800c7f0d7fb1543ed2ca02efefcaa4 1464416 discosnp_2.6.2-2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sat, 18 Feb 2023 05:43:58 +0000 Build-Path: /<> 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Package: discosnp Version: 1:2.6.2-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2776 Depends: libc6 (>= 2.34), libgatbcore3 (>= 1.4.2+dfsg), libgcc-s1 (>= 3.0), libhdf5-103-1, libstdc++6 (>= 11), zlib1g (>= 1:1.2.6), python3:any, python3, gatb-core Section: science Priority: optional Homepage: http://colibread.inria.fr/discosnp/ Description: discovering Single Nucleotide Polymorphism from raw set(s) of reads Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS). . Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed. . The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP: . 1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism. . This program is superseded by DiscoSnp++. drwxr-xr-x root/root 0 2023-02-17 22:51 ./ drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/ drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/bin/ -rwxr-xr-x root/root 216936 2023-02-17 22:51 ./usr/bin/create_coverage_h5_file -rwxr-xr-x root/root 319528 2023-02-17 22:51 ./usr/bin/kissnp2 -rwxr-xr-x root/root 307192 2023-02-17 22:51 ./usr/bin/kissreads2 -rwxr-xr-x root/root 26202 2023-02-17 22:51 ./usr/bin/run_discoSnp++.sh -rwxr-xr-x root/root 30044 2023-02-17 22:51 ./usr/bin/run_discoSnp++_ML.sh drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/lib/ drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/lib/discosnp/ drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/lib/discosnp/bin/ -rwxr-xr-x root/root 27264 2023-02-17 22:51 ./usr/lib/discosnp/bin/quick_hierarchical_clustering -rwxr-xr-x root/root 39728 2023-02-17 22:51 ./usr/lib/discosnp/bin/read_file_names drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/share/ drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/share/discosnp/ drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/ -rw-r--r-- root/root 12735 2022-02-07 12:40 ./usr/share/discosnp/discoSnpRAD/COOKBOOK.md -rw-r--r-- root/root 4056 2022-02-07 12:40 ./usr/share/discosnp/discoSnpRAD/README.md drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/clustering_scripts/ -rw-r--r-- root/root 1518 2022-02-07 12:40 ./usr/share/discosnp/discoSnpRAD/clustering_scripts/README.md -rwxr-xr-x root/root 7207 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/clustering_scripts/discoRAD_clustering.sh -rwxr-xr-x root/root 10242 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py -rw-r--r-- root/root 476 2022-02-07 12:40 ./usr/share/discosnp/discoSnpRAD/clustering_scripts/from_SRC_to_edges.py drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/ -rwxr-xr-x root/root 5163 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/1SNP_per_cluster.py -rw-r--r-- root/root 4857 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/README.md -rw-r--r-- root/root 3348 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/add_cluster_info_to_mapped_vcf.py -rwxr-xr-x root/root 4897 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/filter_by_cluster_size_and_rank.py -rwxr-xr-x root/root 6560 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/filter_paralogs.py -rw-r--r-- root/root 7033 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/filter_vcf_by_indiv_cov_max_missing_and_maf.py -rw-r--r-- root/root 524 2022-02-07 12:40 ./usr/share/discosnp/discoSnpRAD/post-processing_scripts/vcf2structure.sh -rwxr-xr-x root/root 29024 2023-02-17 22:51 ./usr/share/discosnp/discoSnpRAD/run_discoSnpRad.sh drwxr-xr-x root/root 0 2023-02-17 22:51 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drwxr-xr-x root/root 0 2023-02-17 22:51 ./usr/share/python3/runtime.d/ -rwxr-xr-x root/root 137 2023-02-17 22:51 ./usr/share/python3/runtime.d/discosnp.rtupdate +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 63504 Build-Time: 716 Distribution: lunar-proposed Host Architecture: riscv64 Install-Time: 500 Job: discosnp_2.6.2-2.dsc Machine Architecture: riscv64 Package: discosnp Package-Time: 1250 Source-Version: 1:2.6.2-2 Space: 63504 Status: successful Version: 1:2.6.2-2 -------------------------------------------------------------------------------- Finished at 2023-02-18T05:44:06Z Build needed 00:20:50, 63504k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25601326 Scanning for processes to kill in build PACKAGEBUILD-25601326 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25601326 Stopping target for build PACKAGEBUILD-25601326 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-25601326 Removing build PACKAGEBUILD-25601326