Ubuntu
ecopcr package

ecopcr 1.0.1+dfsg-2 source package in Ubuntu

Changelog

ecopcr (1.0.1+dfsg-2) unstable; urgency=medium

  * Standards-Version: 4.5.1 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 04 Dec 2020 16:08:49 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
ecopcr_1.0.1+dfsg-2.dsc 2.0 KiB 34f5ee7f7d16f0d02ea06acdc6db792a29af5bac08e0c207712b5d27ea3f3cb5
ecopcr_1.0.1+dfsg.orig.tar.xz 23.7 MiB 90e3027e465f1a05a8204b41cff48b5a7fbc00d8e0dce71602698e7abd1baeda
ecopcr_1.0.1+dfsg-2.debian.tar.xz 15.0 KiB 5539e37f34801f07175c65a1b038b0ef4327588480932110a81b85484a2ce389

Available diffs

No changes file available.

Binary packages built by this source

ecopcr: estimate PCR barcode primers quality

 DNA barcoding is a tool for characterizing the species origin using a
 short sequence from a standard position and agreed upon position in the
 genome. To be used as a DNA barcode, a genome locus should vary among
 individuals of the same species only to a minor degree and it should
 vary among species very quickly. From a practical point of view, a
 barcode locus should be flanked by two conserved regions to design PCR
 primers. Several manually discovered barcode loci like COI, rbcL, 18S,
 16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
 function has been described to measure their quality in terms of
 universality (barcode coverage, Bc ) or in terms of taxonomical
 discrimination capacity (barcode specificity, Bs ).
 .
 ecoPCR is an electronic PCR software developed by LECA and
 Helix-Project. It helps to estimate Barcode primers quality. In
 conjunction with OBITools you can postprocess ecoPCR output to compute
 barcode coverage and barcode specificity. New barcode primers can be
 developed using the ecoPrimers software

ecopcr-dbgsym: No summary available for ecopcr-dbgsym in ubuntu hirsute.

No description available for ecopcr-dbgsym in ubuntu hirsute.