https://launchpad.net/ubuntu/+source/eigensoft/7.2.1+dfsg-1/+build/15133202 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-013 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 16 Jul 23:13:55 ntpdate[1858]: adjust time server 10.211.37.1 offset 0.000629 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15133202 /home/buildd/filecache-default/b7d07d6b68ae68badf26a018a3a0291d50e41e42 Creating target for build PACKAGEBUILD-15133202 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15133202 Starting target for build PACKAGEBUILD-15133202 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15133202 'deb http://ftpmaster.internal/ubuntu cosmic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-15133202 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15133202 Updating target for build PACKAGEBUILD-15133202 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 Packages [1021 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/restricted amd64 Packages [9188 B] Get:8 http://ftpmaster.internal/ubuntu cosmic/restricted Translation-en [3584 B] Get:9 http://ftpmaster.internal/ubuntu cosmic/universe amd64 Packages [8724 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5024 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/multiverse amd64 Packages [155 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/multiverse Translation-en [110 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 Packages [80.1 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [38.8 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 Packages [222 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [117 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/multiverse amd64 Packages [5800 B] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/multiverse Translation-en [4048 B] Fetched 16.5 MB in 4s (4205 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libargon2-1 libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 106 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 57.0 MB of archives. After this operation, 2106 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-files amd64 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo6 amd64 6.1+20180210-4ubuntu1 [84.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 debianutils amd64 4.8.6 [85.6 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 bash amd64 4.4.18-2ubuntu2 [614 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdutils amd64 1:2.32-0.1ubuntu1 [60.4 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 tar amd64 1.30+dfsg-2 [240 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg amd64 1.19.0.5ubuntu3 [1140 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libext2fs2 amd64 1.44.3-1 [158 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fsprogs amd64 1.44.3-1 [396 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-bin amd64 6.1+20180210-4ubuntu1 [163 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main amd64 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main amd64 libperl5.26 amd64 5.26.2-6 [3545 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main amd64 perl amd64 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main amd64 perl-base amd64 5.26.2-6 [1391 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 sed amd64 4.5-1 [184 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 libuuid1 amd64 2.32-0.1ubuntu1 [19.9 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libblkid1 amd64 2.32-0.1ubuntu1 [128 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfdisk1 amd64 2.32-0.1ubuntu1 [167 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw6 amd64 6.1+20180210-4ubuntu1 [130 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libselinux1 amd64 2.8-1build1 [68.5 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmount1 amd64 2.32-0.1ubuntu1 [139 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsmartcols1 amd64 2.32-0.1ubuntu1 [86.0 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 fdisk amd64 2.32-0.1ubuntu1 [109 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 util-linux amd64 2.32-0.1ubuntu1 [916 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-passwd amd64 3.5.45 [47.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libquadmath0 amd64 8.1.0-10ubuntu1 [133 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libitm1 amd64 8.1.0-10ubuntu1 [28.1 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-8-base amd64 8.1.0-10ubuntu1 [19.0 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgcc1 amd64 1:8.1.0-10ubuntu1 [40.7 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libmpx2 amd64 8.1.0-10ubuntu1 [11.7 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 liblsan0 amd64 8.1.0-10ubuntu1 [132 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libtsan0 amd64 8.1.0-10ubuntu1 [288 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcc1-0 amd64 8.1.0-10ubuntu1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libatomic1 amd64 8.1.0-10ubuntu1 [9056 B] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgomp1 amd64 8.1.0-10ubuntu1 [76.4 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libstdc++6 amd64 8.1.0-10ubuntu1 [398 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblz4-1 amd64 1.8.2-1ubuntu1 [86.1 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libudev1 amd64 238-5ubuntu2 [56.1 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libapt-pkg5.0 amd64 1.7.0~alpha2 [803 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 debconf all 1.5.67 [124 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 adduser all 3.117ubuntu1 [163 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgpg-error0 amd64 1.32-1 [56.1 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcrypt20 amd64 1.8.3-1ubuntu1 [419 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpgv amd64 2.2.8-1ubuntu1 [197 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 libseccomp2 amd64 2.3.3-3ubuntu1 [38.9 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 apt amd64 1.7.0~alpha2 [1172 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libapparmor1 amd64 2.12-4ubuntu6 [31.3 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main amd64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcap-ng0 amd64 0.7.9-1 [11.3 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main amd64 libaudit1 amd64 1:2.8.3-1ubuntu2 [38.6 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main amd64 libargon2-1 amd64 0~20171227-0.1 [20.2 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcryptsetup12 amd64 2:2.0.3-6ubuntu1 [139 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkmod2 amd64 25-1ubuntu1 [41.6 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 mount amd64 2.32-0.1ubuntu1 [104 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses6 amd64 6.1+20180210-4ubuntu1 [101 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 libprocps7 amd64 2:3.3.15-2ubuntu1 [32.6 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 procps amd64 2:3.3.15-2ubuntu1 [231 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd amd64 238-5ubuntu2 [2930 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsystemd0 amd64 238-5ubuntu2 [208 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 systemd-sysv amd64 238-5ubuntu2 [13.7 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcom-err2 amd64 1.44.3-1 [9184 B] Get:63 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsepol1 amd64 2.8-1 [252 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage-common all 2.8-1build1 [7000 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsemanage1 amd64 2.8-1build1 [85.3 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libss2 amd64 1.44.3-1 [11.1 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgmp10 amd64 2:6.1.2+dfsg-3 [240 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main amd64 libp11-kit0 amd64 0.23.12-2 [184 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtasn1-6 amd64 4.13-3 [36.1 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses5 amd64 6.1+20180210-4ubuntu1 [95.2 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw5 amd64 6.1+20180210-4ubuntu1 [117 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo5 amd64 6.1+20180210-4ubuntu1 [79.3 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main amd64 libargon2-0 amd64 0~20171227-0.1 [4532 B] Get:74 http://ftpmaster.internal/ubuntu cosmic/main amd64 readline-common all 7.0-5 [52.2 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main amd64 libreadline7 amd64 7.0-5 [123 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main amd64 libslang2 amd64 2.3.2-1ubuntu1 [425 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsqlite3-0 amd64 3.24.0-1 [506 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main amd64 libssl1.1 amd64 1.1.0g-2ubuntu5 [1129 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main amd64 openssl amd64 1.1.0g-2ubuntu5 [531 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main amd64 tzdata all 2018e-1 [188 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libpng16-16 amd64 1.6.34-2 [176 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.31-1ubuntu1 [1849 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 binutils-common amd64 2.31-1ubuntu1 [194 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 binutils amd64 2.31-1ubuntu1 [3388 B] Get:85 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libbinutils amd64 2.31-1ubuntu1 [481 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libasan4 amd64 7.3.0-25ubuntu1 [358 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libubsan0 amd64 7.3.0-25ubuntu1 [126 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libcilkrts5 amd64 7.3.0-25ubuntu1 [42.5 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 g++-7 amd64 7.3.0-25ubuntu1 [7573 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-7 amd64 7.3.0-25ubuntu1 [7455 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libstdc++-7-dev amd64 7.3.0-25ubuntu1 [1464 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgcc-7-dev amd64 7.3.0-25ubuntu1 [2377 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cpp-7 amd64 7.3.0-25ubuntu1 [6737 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc-7-base amd64 7.3.0-25ubuntu1 [19.0 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp amd64 4:7.3.0-3ubuntu3 [27.5 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc amd64 4:7.3.0-3ubuntu3 [5216 B] Get:97 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++ amd64 4:7.3.0-3ubuntu3 [1592 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main amd64 make amd64 4.2.1-1.1 [162 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main amd64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main amd64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main amd64 build-essential amd64 12.5ubuntu2 [4732 B] Get:102 http://ftpmaster.internal/ubuntu cosmic/main amd64 e2fslibs amd64 1.44.3-1 [2704 B] Get:103 http://ftpmaster.internal/ubuntu cosmic/main amd64 pinentry-curses amd64 1.1.0-1build2 [35.9 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnpth0 amd64 1.5-4 [7708 B] Get:105 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpg amd64 2.2.8-1ubuntu1 [470 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpgconf amd64 2.2.8-1ubuntu1 [122 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main amd64 gpg-agent amd64 2.2.8-1ubuntu1 [228 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcomerr2 amd64 1.44.3-1 [2704 B] Get:109 http://ftpmaster.internal/ubuntu cosmic/main amd64 libusb-0.1-4 amd64 2:0.1.12-32 [17.4 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 linux-libc-dev amd64 4.17.0-5.6 [1003 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic/main amd64 pkgbinarymangler all 140 [53.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 57.0 MB in 1s (41.0 MB/s) (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_amd64.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:amd64 (6.1+20180210-4ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_amd64.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_amd64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_amd64.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_amd64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12646 files and directories currently installed.) 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Setting up libncurses5:amd64 (6.1+20180210-4ubuntu1) ... Setting up libgomp1:amd64 (8.1.0-10ubuntu1) ... Setting up libatomic1:amd64 (8.1.0-10ubuntu1) ... Setting up readline-common (7.0-5) ... Setting up libcc1-0:amd64 (8.1.0-10ubuntu1) ... Setting up make (4.2.1-1.1) ... Setting up pkgbinarymangler (140) ... Setting up e2fslibs:amd64 (1.44.3-1) ... Setting up libpng16-16:amd64 (1.6.34-2) ... Setting up libncursesw5:amd64 (6.1+20180210-4ubuntu1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jul 16 23:14:23 UTC 2018. Universal Time is now: Mon Jul 16 23:14:23 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (238-5ubuntu2) ... Setting up libtsan0:amd64 (8.1.0-10ubuntu1) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:amd64 (4.17.0-5.6) ... Setting up perl-modules-5.26 (5.26.2-6) ... Setting up liblsan0:amd64 (8.1.0-10ubuntu1) ... 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Setting up cpp-7 (7.3.0-25ubuntu1) ... Setting up libstdc++-7-dev:amd64 (7.3.0-25ubuntu1) ... Setting up perl (5.26.2-6) ... Setting up binutils-x86-64-linux-gnu (2.31-1ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up binutils (2.31-1ubuntu1) ... Setting up gcc-7 (7.3.0-25ubuntu1) ... Setting up g++-7 (7.3.0-25ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15133202 amd64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15133202 --arch=amd64 --dist=cosmic-proposed --nolog -A eigensoft_7.2.1+dfsg-1.dsc Initiating build PACKAGEBUILD-15133202 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-013.buildd +==============================================================================+ | eigensoft 7.2.1+dfsg-1 (amd64) 16 Jul 2018 23:14 | +==============================================================================+ Package: eigensoft Version: 7.2.1+dfsg-1 Source Version: 7.2.1+dfsg-1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/eigensoft-Kl7Sav/eigensoft-7.2.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/eigensoft-Kl7Sav' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15133202/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- eigensoft_7.2.1+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-lZkaMy/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-lZkaMy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lZkaMy/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-lZkaMy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lZkaMy/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-lZkaMy/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 848 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-lZkaMy/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 848 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12690 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev Filtered Build-Depends: debhelper (>= 11~), gfortran, libblas-dev, liblapack-dev, liblapacke-dev, libgsl-dev dpkg-deb: building package 'sbuild-build-depends-eigensoft-dummy' in '/<>/resolver-DTZQv7/apt_archive/sbuild-build-depends-eigensoft-dummy.deb'. Ign:1 copy:/<>/resolver-DTZQv7/apt_archive ./ InRelease Get:2 copy:/<>/resolver-DTZQv7/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-DTZQv7/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-DTZQv7/apt_archive ./ Sources [243 B] Get:5 copy:/<>/resolver-DTZQv7/apt_archive ./ Packages [560 B] Fetched 2922 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install eigensoft build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu60 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtmglib-dev libtmglib3 libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-7 groff-base intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libgfortran-7-dev libgfortran4 libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libicu60 liblapack-dev liblapack3 liblapacke liblapacke-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtmglib-dev libtmglib3 libtool libxml2 m4 man-db po-debconf sbuild-build-depends-eigensoft-dummy 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 32.3 MB of archives. After this operation, 135 MB of additional disk space will be used. Get:1 copy:/<>/resolver-DTZQv7/apt_archive ./ sbuild-build-depends-eigensoft-dummy 0.invalid.0 [888 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbsd0 amd64 0.9.1-1 [44.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 groff-base amd64 1.22.3-10 [1153 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 man-db amd64 2.8.3-2 [1019 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic-mgc amd64 1:5.33-3 [192 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic1 amd64 1:5.33-3 [69.8 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 file amd64 1:5.33-3 [22.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 libelf1 amd64 0.170-0.5 [44.1 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-0 amd64 2.56.1-2ubuntu1 [1167 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main amd64 libicu60 amd64 60.2-6ubuntu1 [8055 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-7build1 [664 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext-base amd64 0.19.8.1-6build1 [50.0 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsigsegv2 amd64 2.12-2 [13.9 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main amd64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 autopoint all 0.19.8.1-6build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtool all 2.4.6-2.1 [195 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 dwz amd64 0.12-2 [77.7 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext amd64 0.19.8.1-6build1 [895 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 po-debconf all 1.0.20 [232 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 debhelper all 11.3.2ubuntu1 [883 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgfortran4 amd64 7.3.0-25ubuntu1 [492 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libgfortran-7-dev amd64 7.3.0-25ubuntu1 [531 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gfortran-7 amd64 7.3.0-25ubuntu1 [7109 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 gfortran amd64 4:7.3.0-3ubuntu3 [1352 B] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 libblas3 amd64 3.8.0-1 [140 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 libblas-dev amd64 3.8.0-1 [143 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libgslcblas0 amd64 2.5+dfsg-4 [79.7 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libgsl23 amd64 2.5+dfsg-4 [852 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/universe amd64 libgsl-dev amd64 2.5+dfsg-4 [1058 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblapack3 amd64 3.8.0-1 [2133 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblapack-dev amd64 3.8.0-1 [2161 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblapacke amd64 3.8.0-1 [355 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtmglib3 amd64 3.8.0-1 [119 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtmglib-dev amd64 3.8.0-1 [120 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblapacke-dev amd64 3.8.0-1 [315 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.3 MB in 1s (43.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12690 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-3_amd64.deb ... Unpacking libmagic-mgc (1:5.33-3) ... Selecting previously unselected package libmagic1:amd64. 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Preparing to unpack .../42-liblapacke_3.8.0-1_amd64.deb ... Unpacking liblapacke:amd64 (3.8.0-1) ... Selecting previously unselected package libtmglib3:amd64. Preparing to unpack .../43-libtmglib3_3.8.0-1_amd64.deb ... Unpacking libtmglib3:amd64 (3.8.0-1) ... Selecting previously unselected package libtmglib-dev:amd64. Preparing to unpack .../44-libtmglib-dev_3.8.0-1_amd64.deb ... Unpacking libtmglib-dev:amd64 (3.8.0-1) ... Selecting previously unselected package liblapacke-dev:amd64. Preparing to unpack .../45-liblapacke-dev_3.8.0-1_amd64.deb ... Unpacking liblapacke-dev:amd64 (3.8.0-1) ... Selecting previously unselected package sbuild-build-depends-eigensoft-dummy. Preparing to unpack .../46-sbuild-build-depends-eigensoft-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-eigensoft-dummy (0.invalid.0) ... Setting up libicu60:amd64 (60.2-6ubuntu1) ... Setting up libarchive-zip-perl (1.60-1ubuntu1) ... Setting up libgfortran4:amd64 (7.3.0-25ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libelf1:amd64 (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:amd64 (2.56.1-2ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6build1) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:amd64 (0.9.1-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:amd64 (1:5.33-3) ... Setting up libcroco3:amd64 (0.6.12-2) ... Setting up libblas3:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libgfortran-7-dev:amd64 (7.3.0-25ubuntu1) ... Setting up gfortran-7 (7.3.0-25ubuntu1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgslcblas0:amd64 (2.5+dfsg-4) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up gfortran (4:7.3.0-3ubuntu3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libgsl23:amd64 (2.5+dfsg-4) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libblas-dev:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libgsl-dev (2.5+dfsg-4) ... Setting up liblapack3:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up liblapacke:amd64 (3.8.0-1) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up liblapack-dev:amd64 (3.8.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libtool (2.4.6-2.1) ... Setting up libtmglib3:amd64 (3.8.0-1) ... Setting up po-debconf (1.0.20) ... Setting up libtmglib-dev:amd64 (3.8.0-1) ... Setting up liblapacke-dev:amd64 (3.8.0-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-eigensoft-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (x86_64) Toolchain package versions: binutils_2.31-1ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-25ubuntu1 gcc-7_7.3.0-25ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-25ubuntu1 libstdc++6_8.1.0-10ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31-1ubuntu1 binutils-common_2.31-1ubuntu1 binutils-x86-64-linux-gnu_2.31-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 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libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-7-dev_7.3.0-25ubuntu1 libgfortran4_7.3.0-25ubuntu1 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-10ubuntu1 libgpg-error0_1.32-1 libgsl-dev_2.5+dfsg-4 libgsl23_2.5+dfsg-4 libgslcblas0_2.5+dfsg-4 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-10ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblapack-dev_3.8.0-1 liblapack3_3.8.0-1 liblapacke_3.8.0-1 liblapacke-dev_3.8.0-1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-10ubuntu1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-10ubuntu1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.5-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libquadmath0_8.1.0-10ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-25ubuntu1 libstdc++6_8.1.0-10ubuntu1 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtmglib-dev_3.8.0-1 libtmglib3_3.8.0-1 libtool_2.4.6-2.1 libtsan0_8.1.0-10ubuntu1 libubsan0_7.3.0-25ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 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util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jul 16 14:17:17 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./eigensoft_7.2.1+dfsg-1.dsc dpkg-source: info: extracting eigensoft in eigensoft-7.2.1+dfsg dpkg-source: info: unpacking eigensoft_7.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking eigensoft_7.2.1+dfsg-1.debian.tar.xz dpkg-source: info: applying blas.patch dpkg-source: info: applying lapacke.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15133202 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15133202 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15133202 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package eigensoft dpkg-buildpackage: info: source version 7.2.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build eigensoft-7.2.1+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>/eigensoft-7.2.1+dfsg' dh_clean /usr/bin/make -C src clobber make[2]: Entering directory '/<>/eigensoft-7.2.1+dfsg/src' rm -f *.o */*.o */*.a nicksrc/*.o eigensrc/*.o ksrc/*.o rm -f baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca cd ../bin/ ; rm -f baseprog convertf mergeit pca smshrink pcatoy smartrel smarteigenstrat twstats eigenstrat eigenstratQTL smartpca ; cd ../src make[2]: Leaving directory '/<>/eigensoft-7.2.1+dfsg/src' make[1]: Leaving directory '/<>/eigensoft-7.2.1+dfsg' debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/<>/eigensoft-7.2.1+dfsg' /usr/bin/make DEBUG_OPTIONS=-g -C src all make[2]: Entering directory '/<>/eigensoft-7.2.1+dfsg/src' cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o baseprog.o baseprog.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mcio.o mcio.c mcio.c: In function ‘getgenos’: mcio.c:1368:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system (cmd); ^~~~~~~~~~~~ In file included from ../include/statsubs.h:6:0, from ../include/nicklib.h:4, from ../include/admutils.h:2, from ../include/mcio.h:11, from mcio.c:3: mcio.c: In function ‘getindivs’: ../include/strsubs.h:83:54: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] #define ZALLOC(item,n,type) if ((item = (type *)calloc((n),sizeof(type))) == NULL) \ ^~~~~~~~~~~~~~~~~~~~~~~~ mcio.c:952:3: note: in expansion of macro ‘ZALLOC’ ZALLOC (indivmarkers, nindiv, Indiv *); ^~~~~~ In file included from ../include/strsubs.h:1:0, from ../include/vsubs.h:5, from ../include/mcio.h:10, from mcio.c:3: /usr/include/stdlib.h:541:14: note: in a call to allocation function ‘calloc’ declared here extern void *calloc (size_t __nmemb, size_t __size) ^~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o egsubs.o egsubs.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o admutils.o admutils.c admutils.c: In function ‘setid2pops’: admutils.c:1256:31: warning: format ‘%s’ expects a matching ‘char *’ argument [-Wformat=] printf ("(setid2pops): %s not found\n"); ~^ cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o h2d.o h2d.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/exclude.o eigensrc/exclude.c /usr/bin/make -C nicksrc make[3]: Entering directory '/<>/eigensoft-7.2.1+dfsg/src/nicksrc' cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gauss.o gauss.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gds.o gds.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getpars.o getpars.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linsubs.o linsubs.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sortit.o sortit.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o statsubs.o statsubs.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsubs.o strsubs.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vsubs.o vsubs.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o xsearch.o xsearch.c cc -I../../include -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twtable.o twtable.c ar -r libnick.a gauss.o gds.o getpars.o linsubs.o sortit.o statsubs.o strsubs.o vsubs.o xsearch.o twtable.o ar: creating libnick.a make[3]: Leaving directory '/<>/eigensoft-7.2.1+dfsg/src/nicksrc' cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now baseprog.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o baseprog cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convertf.o convertf.c convertf.c: In function ‘main’: convertf.c:257:5: warning: implicit declaration of function ‘setfamilypopnames’; did you mean ‘setgenotypename’? [-Wimplicit-function-declaration] setfamilypopnames (YES); ^~~~~~~~~~~~~~~~~ setgenotypename cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now convertf.o mcio.o egsubs.o admutils.o h2d.o eigensrc/exclude.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o convertf cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mergeit.o mergeit.c cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now mergeit.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o mergeit cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pca.o pca.c pca.c: In function ‘main’: pca.c:102:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); ^~~~~~~~~~~~~~~~~~~~~~~~~ pca.c:167:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); ^~~~~~~~~~~~~~~~~~~~~~~~~ pca.c:190:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); /* should be \n character */ ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigsubs.o eigensrc/eigsubs.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/eigx.o eigensrc/eigx.c cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now pca.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o pca cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o smshrink.o smshrink.c smshrink.c: In function ‘main’: smshrink.c:624:5: warning: implicit declaration of function ‘setid2pops’; did you mean ‘setsdpos’? [-Wimplicit-function-declaration] setid2pops (id2pops, indivmarkers, numindivs); ^~~~~~~~~~ setsdpos smshrink.c:774:5: warning: implicit declaration of function ‘kjg_fpca’ [-Wimplicit-function-declaration] kjg_fpca (numeigs, fastdim, fastiter, evals, evecs); ^~~~~~~~ smshrink.c:578:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system (buff); ^~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartsubs.o eigensrc/smartsubs.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o twsubs.o twsubs.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qpsubs.o qpsubs.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regsubs.o regsubs.c cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gval.o gval.c gval.c: In function ‘setgval’: gval.c:67:5: warning: implicit declaration of function ‘getcolxz’; did you mean ‘get_ncols’? [-Wimplicit-function-declaration] getcolxz (cc, cupt, xindex, xtypes, nrows, i, xmean, xfancy, &n0, &n1); ^~~~~~~~ get_ncols cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_fpca.o ksrc/kjg_fpca.c ksrc/kjg_fpca.c: In function ‘kjg_fpca’: ksrc/kjg_fpca.c:31:14: warning: implicit declaration of function ‘get_ncols’; did you mean ‘gethpos’? [-Wimplicit-function-declaration] size_t m = get_ncols (); ^~~~~~~~~ gethpos ksrc/kjg_fpca.c:32:14: warning: implicit declaration of function ‘get_nrows’; did you mean ‘gethpos’? [-Wimplicit-function-declaration] size_t n = get_nrows (); ^~~~~~~~~ gethpos ksrc/kjg_fpca.c: In function ‘kjg_fpca_XTXA’: ksrc/kjg_fpca.c:118:11: warning: implicit declaration of function ‘kjg_geno_get_normalized_rows’ [-Wimplicit-function-declaration] r = kjg_geno_get_normalized_rows (i, KJG_FPCA_ROWS, Y); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksrc/kjg_gsl.o ksrc/kjg_gsl.c ksrc/kjg_gsl.c: In function ‘kjg_gsl_matrix_fscanf’: ksrc/kjg_gsl.c:38:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (stream, "%lg", &x); ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now smshrink.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o smshrink cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/pcatoy.o eigensrc/pcatoy.c cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now eigensrc/pcatoy.o eigensrc/eigsubs.o eigensrc/eigx.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/pcatoy cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartrel.o eigensrc/smartrel.c cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now eigensrc/smartrel.o twsubs.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o eigensrc/eigsubs.o eigensrc/eigx.o eigensrc/smartsubs.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartrel cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smarteigenstrat.o eigensrc/smarteigenstrat.c eigensrc/smarteigenstrat.c: In function ‘readpcafile’: eigensrc/smarteigenstrat.c:332:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%d", &K); ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:339:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:342:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/smarteigenstrat.c:360:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &tempdouble); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now eigensrc/smarteigenstrat.o mcio.o admutils.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smarteigenstrat cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/twstats.o eigensrc/twstats.c cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now eigensrc/twstats.o nicksrc/libnick.a -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/twstats cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now eigensrc/eigenstrat.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstrat eigensrc/eigenstrat.c: In function ‘main’: eigensrc/eigenstrat.c:86:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:123:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%d", &K); ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:130:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:133:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:151:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &tempdouble); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:165:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppheno, "%c", &Xchar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:188:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppheno, "%c", &Xchar); /* should be end of file */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:244:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstrat.c:267:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); /* should be \n character */ ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now eigensrc/eigenstratQTL.c -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/eigenstratQTL eigensrc/eigenstratQTL.c: In function ‘main’: eigensrc/eigenstratQTL.c:86:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:123:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%d", &K); ^~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:130:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &tempdouble); /* eigenvalues */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:133:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &V[NSAMPLES * n + k]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:151:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppca, "%lf", &tempdouble); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:172:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppheno, "%lf", &iscase[n]); /* QTL phenotype */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:174:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fppheno, "%lf", &tempdouble); /* to check # entries */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:227:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); ^~~~~~~~~~~~~~~~~~~~~~~~~ eigensrc/eigenstratQTL.c:250:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf (fp, "%c", &Xchar); /* should be \n character */ ^~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O2 -fdebug-prefix-map=/<>/eigensoft-7.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I../include -I/usr/include/openblas -Wdate-time -D_FORTIFY_SOURCE=2 -c -o eigensrc/smartpca.o eigensrc/smartpca.c eigensrc/smartpca.c: In function ‘main’: eigensrc/smartpca.c:644:5: warning: implicit declaration of function ‘setid2pops’; did you mean ‘setsdpos’? [-Wimplicit-function-declaration] setid2pops (id2pops, indivmarkers, numindivs); ^~~~~~~~~~ setsdpos eigensrc/smartpca.c:809:5: warning: implicit declaration of function ‘kjg_fpca’ [-Wimplicit-function-declaration] kjg_fpca (numeigs, fastdim, fastiter, evals, evecs); ^~~~~~~~ eigensrc/smartpca.c:597:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system (buff); ^~~~~~~~~~~~~ cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now eigensrc/smartpca.o eigensrc/eigsubs.o eigensrc/exclude.o eigensrc/smartsubs.o eigensrc/eigx.o mcio.o qpsubs.o admutils.o egsubs.o regsubs.o gval.o nicksrc/libnick.a ksrc/kjg_fpca.o ksrc/kjg_gsl.o -lgsl -lblas -lm -llapacke -llapack -lpthread -o eigensrc/smartpca make[2]: Leaving directory '/<>/eigensoft-7.2.1+dfsg/src' cd src && make install make[2]: Entering directory '/<>/eigensoft-7.2.1+dfsg/src' mv baseprog convertf mergeit pca smshrink eigensrc/pcatoy eigensrc/smartrel eigensrc/smarteigenstrat eigensrc/twstats eigensrc/eigenstrat eigensrc/eigenstratQTL eigensrc/smartpca ../bin make[2]: Leaving directory '/<>/eigensoft-7.2.1+dfsg/src' make[1]: Leaving directory '/<>/eigensoft-7.2.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_install make[1]: Entering directory '/<>/eigensoft-7.2.1+dfsg' dh_install find debian/eigensoft/usr/share/ -type f -empty -delete # file consists only from single line with wrong interpreter find debian/eigensoft/usr/share/ -type f -name HGDP.X.perl -delete # Fix wrappers and drop *.perl extension in /usr/bin while keeping # the original name in /usr/lib/debian-med/bin mkdir -p debian/eigensoft/usr/lib/debian-med/bin for pl in evec2pca-ped evec2pca smarteigenstrat smartpca ; do \ rm debian/eigensoft/usr/bin/${pl} ; \ sed -i \ -e "s?\(command[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \ -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(${pl}\)?\1/usr/lib/eigensoft/\2?" \ -e "s?\(cmd[[:space:]]*=[[:space:]]*\"\)\(evec2pca.*\)\.perl?\1?" \ -e "s?\(${pl}\)\.perl?\1?" \ debian/eigensoft/usr/bin/${pl}.perl ; \ cp -a debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/bin/${pl} ; \ mv debian/eigensoft/usr/bin/${pl}.perl debian/eigensoft/usr/lib/debian-med/bin ; \ done rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca-ped': No such file or directory rm: cannot remove 'debian/eigensoft/usr/bin/evec2pca': No such file or directory rm debian/eigensoft/usr/bin/gc.perl make[1]: Leaving directory '/<>/eigensoft-7.2.1+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/<>/eigensoft-7.2.1+dfsg' dh_fixperms find debian/*/usr/share/eigensoft -type f -name "*.perl" -exec chmod +x \{\} \; make[1]: Leaving directory '/<>/eigensoft-7.2.1+dfsg' dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/eigensoft/usr/bin/smshrink debian/eigensoft/usr/lib/eigensoft/smartpca were not linked against libblas.so.3 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 140 INFO: pkgstriptranslations version 140 pkgstriptranslations: processing eigensoft (in debian/eigensoft); do_strip: , oemstrip: pkgstriptranslations: processing eigensoft-dbgsym (in debian/.debhelper/eigensoft/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/eigensoft/DEBIAN/control, package eigensoft, directory debian/eigensoft pkgstripfiles: Running PNG optimization (using 4 cpus) for package eigensoft ... pkgstripfiles: No PNG files. dpkg-deb: building package 'eigensoft' in '../eigensoft_7.2.1+dfsg-1_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/eigensoft/dbgsym-root/DEBIAN/control, package eigensoft-dbgsym, directory debian/.debhelper/eigensoft/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package eigensoft-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'eigensoft-dbgsym' in 'debian/.debhelper/scratch-space/build-eigensoft/eigensoft-dbgsym_7.2.1+dfsg-1_amd64.deb'. Renaming eigensoft-dbgsym_7.2.1+dfsg-1_amd64.deb to eigensoft-dbgsym_7.2.1+dfsg-1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../eigensoft_7.2.1+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build eigensoft-7.2.1+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180716-2315 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ eigensoft_7.2.1+dfsg-1_amd64.changes: ------------------------------------- Format: 1.8 Date: Mon, 16 Jul 2018 16:10:33 +0200 Source: eigensoft Binary: eigensoft Architecture: amd64 Version: 7.2.1+dfsg-1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: eigensoft - reduction of population bias for genetic analyses Changes: eigensoft (7.2.1+dfsg-1) unstable; urgency=medium . [ Steffen Moeller ] * debian/upstream/metadata; Added references to registries and paper . [ Andreas Tille ] * New upstream version * d/watch: Source is now on Github * d/rules: Do not parse d/changelog * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 Checksums-Sha1: f1ce21a131ee31aed2847493d42c1b5d1b218cb1 1092464 eigensoft-dbgsym_7.2.1+dfsg-1_amd64.ddeb 1275558c8972ac94bacab421cef70342ac70ea17 5468 eigensoft_7.2.1+dfsg-1_amd64.buildinfo 45496815fa81aa63db5aeccb7dacc5b9e8bf536f 402896 eigensoft_7.2.1+dfsg-1_amd64.deb Checksums-Sha256: 5a8eaaf2d650ece567bab160386d5682a43c1e551a173a4ba6f5dcc5f0323696 1092464 eigensoft-dbgsym_7.2.1+dfsg-1_amd64.ddeb 6b2f2365657997b70a2ffbdb4fa6e6488b31404cb1201c0847909328ce6f5e69 5468 eigensoft_7.2.1+dfsg-1_amd64.buildinfo fd771f99e3c6e3fcfc11064fc962ca17d3ac2787d2638733f108f6227915138e 402896 eigensoft_7.2.1+dfsg-1_amd64.deb Files: b56e4da024ffec3b302388707458d652 1092464 debug optional eigensoft-dbgsym_7.2.1+dfsg-1_amd64.ddeb 9607be51bc32c66b70a47a6c2be216b4 5468 science optional eigensoft_7.2.1+dfsg-1_amd64.buildinfo 9f063dfdd8cc99fb41ea0d6197deb218 402896 science optional eigensoft_7.2.1+dfsg-1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ eigensoft_7.2.1+dfsg-1_amd64.deb -------------------------------- new debian package, version 2.0. size 402896 bytes: control archive=3456 bytes. 1217 bytes, 21 lines control 13164 bytes, 161 lines md5sums Package: eigensoft Version: 7.2.1+dfsg-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2720 Depends: libblas3 | libblas.so.3, libc6 (>= 2.23), libgsl23 (>= 2.5), liblapack3 | liblapack.so.3, liblapacke, perl:any Recommends: gnuplot Section: science Priority: optional Homepage: http://www.hsph.harvard.edu/faculty/alkes-price/software/ Description: reduction of population bias for genetic analyses The EIGENSOFT package combines functionality from the group's population genetics methods (Patterson et al. 2006) and their EIGENSTRAT stratification method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. 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requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 17448 Build-Time: 27 Distribution: cosmic-proposed Host Architecture: amd64 Install-Time: 13 Job: eigensoft_7.2.1+dfsg-1.dsc Machine Architecture: amd64 Package: eigensoft Package-Time: 40 Source-Version: 7.2.1+dfsg-1 Space: 17448 Status: successful Version: 7.2.1+dfsg-1 -------------------------------------------------------------------------------- Finished at 20180716-2315 Build needed 00:00:40, 17448k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-15133202 Scanning for processes to kill in build PACKAGEBUILD-15133202