RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '965472-2183012', '/home/buildd/filecache-default/594c57f03c05d81a4c41c2c2b0015d7f2142b2f3'] Synching the system clock with the buildd NTP service... 3 May 09:12:30 ntpdate[30749]: adjust time server 10.211.37.1 offset 0.000008 sec Unpacking chroot for build 965472-2183012 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '965472-2183012'] Mounting chroot for build 965472-2183012 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '965472-2183012', 'universe'] Attempting OGRE for universe in build-965472-2183012 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '965472-2183012', 'deb http://ftpmaster.internal/ubuntu karmic main universe'] Overriding sources.list in build-965472-2183012 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '965472-2183012'] Updating debian chroot for build 965472-2183012 Get:1 http://ftpmaster.internal karmic Release.gpg [189B] Get:2 http://ftpmaster.internal karmic Release [74.6kB] Get:3 http://ftpmaster.internal karmic/main Packages [1236kB] Get:4 http://ftpmaster.internal karmic/universe Packages [4644kB] Fetched 5954kB in 7s (748kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bsdutils coreutils cpp dash e2fslibs e2fsprogs g++ gcc libblkid1 libc6 libc6-dev libc6-dev-sparc64 libc6-sparc64 libcomerr2 libncurses5 libppl-c2 libppl7 libss2 libuuid1 mount ncurses-base ncurses-bin tar util-linux 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/22.2MB of archives. After this operation, 2060kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! coreutils dash libc6-dev-sparc64 libc6-dev libc6-sparc64 libc6 libcomerr2 e2fslibs e2fsprogs libuuid1 libblkid1 mount ncurses-bin tar util-linux bsdutils libncurses5 ncurses-base libss2 cpp gcc g++ libppl-c2 libppl7 Preconfiguring packages ... Authentication warning overridden. (Reading database ... 9606 files and directories currently installed.) Preparing to replace coreutils 6.10-6ubuntu1 (using .../coreutils_7.2-1ubuntu1_sparc.deb) ... Unpacking replacement coreutils ... Setting up coreutils (7.2-1ubuntu1) ... (Reading database ... 9609 files and directories currently installed.) Preparing to replace dash 0.5.4-12ubuntu2 (using .../dash_0.5.5.1-2ubuntu1_sparc.deb) ... Unpacking replacement dash ... Setting up dash (0.5.5.1-2ubuntu1) ... (Reading database ... 9609 files and directories currently installed.) Preparing to replace libc6-dev-sparc64 2.9-4ubuntu3 (using .../libc6-dev-sparc64_2.9-9ubuntu1_sparc.deb) ... Unpacking replacement libc6-dev-sparc64 ... Preparing to replace libc6-dev 2.9-4ubuntu3 (using .../libc6-dev_2.9-9ubuntu1_sparc.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc6-sparc64 2.9-4ubuntu3 (using .../libc6-sparc64_2.9-9ubuntu1_sparc.deb) ... Unpacking replacement libc6-sparc64 ... Preparing to replace libc6 2.9-4ubuntu3 (using .../libc6_2.9-9ubuntu1_sparc.deb) ... Checking for services that may need to be restarted... Checking init scripts... Unpacking replacement libc6 ... Setting up libc6 (2.9-9ubuntu1) ... Installing new version of config file /etc/init.d/glibc.sh ... Checking for services that may need to be restarted... Checking init scripts... Nothing to restart. Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9609 files and directories currently installed.) Preparing to replace libcomerr2 1.41.4-1ubuntu1 (using .../libcomerr2_1.41.5-1ubuntu1_sparc.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.41.5-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9609 files and directories currently installed.) Preparing to replace e2fslibs 1.41.4-1ubuntu1 (using .../e2fslibs_1.41.5-1ubuntu1_sparc.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.41.5-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9609 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.4-1ubuntu1 (using .../e2fsprogs_1.41.5-1ubuntu1_sparc.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.41.5-1ubuntu1) ... (Reading database ... 9610 files and directories currently installed.) Preparing to replace libuuid1 1.41.4-1ubuntu1 (using .../libuuid1_1.41.5-1ubuntu1_sparc.deb) ... Unpacking replacement libuuid1 ... Setting up libuuid1 (1.41.5-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9610 files and directories currently installed.) Preparing to replace libblkid1 1.41.4-1ubuntu1 (using .../libblkid1_2.15~rc2-1ubuntu1_sparc.deb) ... Unpacking replacement libblkid1 ... Setting up libblkid1 (2.15~rc2-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9613 files and directories currently installed.) Preparing to replace mount 2.14.2-1ubuntu4 (using .../mount_2.15~rc2-1ubuntu1_sparc.deb) ... Unpacking replacement mount ... Setting up mount (2.15~rc2-1ubuntu1) ... (Reading database ... 9613 files and directories currently installed.) Preparing to replace ncurses-bin 5.7+20090207-1ubuntu1 (using .../ncurses-bin_5.7+20090411-1ubuntu1_sparc.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.7+20090411-1ubuntu1) ... (Reading database ... 9613 files and directories currently installed.) Preparing to replace tar 1.20-1 (using .../archives/tar_1.22-1_sparc.deb) ... Unpacking replacement tar ... Setting up tar (1.22-1) ... (Reading database ... 9613 files and directories currently installed.) Preparing to replace util-linux 2.14.2-1ubuntu4 (using .../util-linux_2.15~rc2-1ubuntu1_sparc.deb) ... Unpacking replacement util-linux ... Replacing files in old package e2fsprogs ... Setting up util-linux (2.15~rc2-1ubuntu1) ... (Reading database ... 9616 files and directories currently installed.) Preparing to replace bsdutils 1:2.14.2-1ubuntu4 (using .../bsdutils_1%3a2.15~rc2-1ubuntu1_sparc.deb) ... Unpacking replacement bsdutils ... Setting up bsdutils (1:2.15~rc2-1ubuntu1) ... (Reading database ... 9616 files and directories currently installed.) Preparing to replace libncurses5 5.7+20090207-1ubuntu1 (using .../libncurses5_5.7+20090411-1ubuntu1_sparc.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.7+20090411-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9616 files and directories currently installed.) Preparing to replace ncurses-base 5.7+20090207-1ubuntu1 (using .../ncurses-base_5.7+20090411-1ubuntu1_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.7+20090411-1ubuntu1) ... (Reading database ... 9616 files and directories currently installed.) Preparing to replace libss2 1.41.4-1ubuntu1 (using .../libss2_1.41.5-1ubuntu1_sparc.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.41.5-1ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9616 files and directories currently installed.) Preparing to replace cpp 4:4.4.0-0ubuntu8 (using .../cpp_4%3a4.4.0-3ubuntu1_sparc.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.4.0-0ubuntu8 (using .../gcc_4%3a4.4.0-3ubuntu1_sparc.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.4.0-0ubuntu8 (using .../g++_4%3a4.4.0-3ubuntu1_sparc.deb) ... Unpacking replacement g++ ... Preparing to replace libppl-c2 0.10-2 (using .../libppl-c2_0.10.1~pre13-1_sparc.deb) ... Unpacking replacement libppl-c2 ... Preparing to replace libppl7 0.10-2 (using .../libppl7_0.10.1~pre13-1_sparc.deb) ... Unpacking replacement libppl7 ... Setting up libc6-sparc64 (2.9-9ubuntu1) ... Setting up libc6-dev (2.9-9ubuntu1) ... Setting up libc6-dev-sparc64 (2.9-9ubuntu1) ... Setting up cpp (4:4.4.0-3ubuntu1) ... Setting up gcc (4:4.4.0-3ubuntu1) ... Setting up g++ (4:4.4.0-3ubuntu1) ... Setting up libppl7 (0.10.1~pre13-1) ... Setting up libppl-c2 (0.10.1~pre13-1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '965472-2183012', '--nolog', '--batch', '--archive=ubuntu', '--purpose=PRIMARY', '--dist=karmic', '--comp=universe', 'embassy-domalign_0.1.0+20080715-1.dsc'] Initiating build Automatic build of embassy-domalign_0.1.0+20080715-1 on sejong by sbuild/sparc 1.170.5 Build started at 20090503-0913 ****************************************************************************** embassy-domalign_0.1.0+20080715-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 7), libajax6-dev, libnucleus6-dev, emboss-lib, libx11-dev, libgd2-xpm-dev Checking for already installed source dependencies... cdbs: missing debhelper: missing libajax6-dev: missing libnucleus6-dev: missing emboss-lib: missing libx11-dev: missing libgd2-xpm-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper libajax6-dev libnucleus6-dev emboss-lib libx11-dev libgd2-xpm-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils defoma fdupes file fontconfig-config gettext gettext-base groff-base html2text intltool intltool-debian libajax6 libcroco3 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd2-xpm libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libjpeg62 libjpeg62-dev libmagic1 libnewt0.52 libnucleus6 libpng12-0 libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev liburi-perl libwww-perl libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml-parser-perl libxml2 libxpm-dev libxpm4 m4 man-db netbase pkg-config po-debconf ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ucf whiptail x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xtrans-dev zlib1g-dev Suggested packages: autoconf2.13 autobook autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make defoma-doc psfontmgr x-ttcidfont-conf dfontmgr libft-perl cvs gettext-doc groff libgd-tools libdata-dump-perl libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl Recommended packages: curl wget lynx libglib2.0-data shared-mime-info libfribidi0 libmailtools-perl libhtml-format-perl libcompress-zlib-perl xml-core ifupdown libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs debhelper defoma emboss-lib fdupes file fontconfig-config gettext gettext-base groff-base html2text intltool intltool-debian libajax6 libajax6-dev libcroco3 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd2-xpm libgd2-xpm-dev libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libjpeg62 libjpeg62-dev libmagic1 libnewt0.52 libnucleus6 libnucleus6-dev libpng12-0 libpng12-dev libpopt0 libpthread-stubs0 libpthread-stubs0-dev liburi-perl libwww-perl libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml-parser-perl libxml2 libxpm-dev libxpm4 m4 man-db netbase pkg-config po-debconf ttf-dejavu ttf-dejavu-core ttf-dejavu-extra ucf whiptail x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xtrans-dev zlib1g-dev 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/24.9MB of archives. After this operation, 74.8MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev libxpm4 libxpm-dev libmagic1 file libnewt0.52 libpopt0 netbase whiptail bsdmainutils gettext-base groff-base libexpat1 libhtml-tagset-perl liburi-perl libhtml-parser-perl libhtml-tree-perl libwww-perl libxml-parser-perl libxml2 man-db ucf m4 autoconf autotools-dev automake html2text libglib2.0-0 libcroco3 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs defoma emboss-lib ttf-dejavu-core ttf-dejavu-extra ttf-dejavu fontconfig-config libajax6 libajax6-dev libexpat1-dev libfreetype6 libfontconfig1 zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libjpeg62 libpng12-0 libgd2-xpm libjpeg62-dev libpng12-dev libgd2-xpm-dev libnucleus6 libnucleus6-dev dpkg-preconfigure: unable to re-open stdin: Authentication warning overridden. Selecting previously deselected package x11-common. (Reading database ... 9617 files and directories currently installed.) Unpacking x11-common (from .../x11-common_1%3a7.4~5ubuntu18_all.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.4-2_sparc.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.2-3_sparc.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.2-1ubuntu1_sparc.deb) ... Selecting previously deselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.1.99.2-1ubuntu2_all.deb) ... Selecting previously deselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.1.99.2-1ubuntu2_sparc.deb) ... Setting up x11-common (1:7.4~5ubuntu18) ... Selecting previously deselected package x11proto-core-dev. (Reading database ... 9962 files and directories currently installed.) Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.15-1_all.deb) ... Selecting previously deselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.4-2_sparc.deb) ... Selecting previously deselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.0.2-3_sparc.deb) ... Selecting previously deselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_1.5.0-1ubuntu1_all.deb) ... Selecting previously deselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.3-3ubuntu1_all.deb) ... Selecting previously deselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.3-3_all.deb) ... Selecting previously deselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.1-2_sparc.deb) ... Selecting previously deselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.1-2_sparc.deb) ... Selecting previously deselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.2-1ubuntu1_sparc.deb) ... Selecting previously deselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.1.99.2-1ubuntu2_sparc.deb) ... Selecting previously deselected package libxpm4. Unpacking libxpm4 (from .../libxpm4_1%3a3.5.7-1_sparc.deb) ... Selecting previously deselected package libxpm-dev. Unpacking libxpm-dev (from .../libxpm-dev_1%3a3.5.7-1_sparc.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_4.26-2ubuntu3_sparc.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_4.26-2ubuntu3_sparc.deb) ... Selecting previously deselected package libnewt0.52. Unpacking libnewt0.52 (from .../libnewt0.52_0.52.10-1ubuntu1_sparc.deb) ... Selecting previously deselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.14-4_sparc.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../netbase_4.34ubuntu2_all.deb) ... Selecting previously deselected package whiptail. Unpacking whiptail (from .../whiptail_0.52.10-1ubuntu1_sparc.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu3_sparc.deb) ... Selecting previously deselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.17-6ubuntu2_sparc.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-22build1_sparc.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-4_sparc.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.37+dfsg-1ubuntu1_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.59-1ubuntu1_sparc.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.826-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build2_sparc.deb) ... Selecting previously deselected package libxml2. Unpacking libxml2 (from .../libxml2_2.6.32.dfsg-5ubuntu4_sparc.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.5-1build1_sparc.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../archives/ucf_3.0018_all.deb) ... Moving old data out of the way Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.13-1_sparc.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.63-2ubuntu1_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20080123.2_all.deb) ... Selecting previously deselected package automake. Unpacking automake (from .../automake_1%3a1.10.2-0ubuntu3_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-5_sparc.deb) ... Selecting previously deselected package libglib2.0-0. Unpacking libglib2.0-0 (from .../libglib2.0-0_2.20.1-2_sparc.deb) ... Selecting previously deselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.1-2_sparc.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-6ubuntu2_sparc.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.2.8ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-2_sparc.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.40.6-1_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.56ubuntu1_all.deb) ... Selecting previously deselected package defoma. Unpacking defoma (from .../defoma_0.11.10-0.2ubuntu1_all.deb) ... Selecting previously deselected package emboss-lib. Unpacking emboss-lib (from .../emboss-lib_6.0.1-10_sparc.deb) ... Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.29-2_all.deb) ... Selecting previously deselected package ttf-dejavu-extra. Unpacking ttf-dejavu-extra (from .../ttf-dejavu-extra_2.29-2_all.deb) ... Selecting previously deselected package ttf-dejavu. Unpacking ttf-dejavu (from .../ttf-dejavu_2.29-2_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.6.0-1ubuntu12_all.deb) ... Selecting previously deselected package libajax6. Unpacking libajax6 (from .../libajax6_6.0.1-10_sparc.deb) ... Selecting previously deselected package libajax6-dev. Unpacking libajax6-dev (from .../libajax6-dev_6.0.1-10_sparc.deb) ... Selecting previously deselected package libexpat1-dev. Unpacking libexpat1-dev (from .../libexpat1-dev_2.0.1-4_sparc.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.3.9-4.1_sparc.deb) ... 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Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.9-9ubuntu1 make_3.81-5 dpkg-dev_1.14.24ubuntu2 g++-4.4_4.4.0-0ubuntu5 gcc-4.4_4.4.0-0ubuntu5 binutils_2.19.51.20090423-0ubuntu2 libstdc++6_4.4.0-0ubuntu5 libstdc++6-4.4-dev_4.4.0-0ubuntu5 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Tue Apr 21 02:46:42 2009 BST using DSA key ID BAFEC7F2 gpg: Can't check signature: public key not found dpkg-source: extracting embassy-domalign in embassy-domalign-0.1.0+20080715 dpkg-source: unpacking embassy-domalign_0.1.0+20080715.orig.tar.gz dpkg-source: applying /home/buildd/build-965472-2183012/embassy-domalign_0.1.0+20080715-1.diff.gz dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: source package embassy-domalign dpkg-buildpackage: source version 0.1.0+20080715-1 dpkg-buildpackage: host architecture sparc /usr/bin/fakeroot debian/rules clean test -x debian/rules for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-makefile-build rm -f debian/stamp-autotools-files debian/rules build test -x debian/rules mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/embassy-domalign-0.1.0+20080715/./configure cd . && CC="cc" CXX="g++" CFLAGS="-g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" /build/buildd/embassy-domalign-0.1.0+20080715/./configure --build=sparc-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/embassy-domalign" --disable-maintainer-mode --disable-dependency-tracking --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for gawk... 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src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: executing depfiles commands /usr/bin/make -C . make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715' Making all in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' cc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"DOMALIGN\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I/usr/include -I/usr/include/eplplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DBENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -c allversusall.c /bin/bash ../libtool --tag=CC --mode=link cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o allversusall allversusall.o -L/usr/lib -lnucleus -lajax -leplplot -lX11 -lm -lgd -lpng -lz -lm mkdir .libs cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o allversusall allversusall.o -L/usr/lib /usr/lib/libnucleus.so /usr/lib/libajax.so /usr/lib/libeplplot.so /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm cc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"DOMALIGN\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I/usr/include -I/usr/include/eplplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DBENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -c domainalign.c /bin/bash ../libtool --tag=CC --mode=link cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o domainalign domainalign.o -L/usr/lib -lnucleus -lajax -leplplot -lX11 -lm -lgd -lpng -lz -lm cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o domainalign domainalign.o -L/usr/lib /usr/lib/libnucleus.so /usr/lib/libajax.so /usr/lib/libeplplot.so /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm cc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"DOMALIGN\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I/usr/include -I/usr/include/eplplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DBENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -c domainrep.c domainrep.c: In function 'main': domainrep.c:250: warning: ignoring return value of 'system', declared with attribute warn_unused_result domainrep.c:424: warning: ignoring return value of 'system', declared with attribute warn_unused_result /bin/bash ../libtool --tag=CC --mode=link cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o domainrep domainrep.o -L/usr/lib -lnucleus -lajax -leplplot -lX11 -lm -lgd -lpng -lz -lm cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o domainrep domainrep.o -L/usr/lib /usr/lib/libnucleus.so /usr/lib/libajax.so /usr/lib/libeplplot.so /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm cc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"DOMALIGN\" -DVERSION=\"0.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1 -DPLD_png=1 -I. -I/usr/include -I/usr/include/eplplot -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DBENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -c seqalign.c seqalign.c: In function 'main': seqalign.c:503: warning: ignoring return value of 'system', declared with attribute warn_unused_result /bin/bash ../libtool --tag=CC --mode=link cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o seqalign seqalign.o -L/usr/lib -lnucleus -lajax -leplplot -lX11 -lm -lgd -lpng -lz -lm cc -g -O2 -g -Wall -O2 -I/usr/include/eplplot -I/usr/include/ajax -I/usr/include/nucleus -O2 -Wl,-Bsymbolic-functions -o seqalign seqalign.o -L/usr/lib /usr/lib/libnucleus.so /usr/lib/libajax.so /usr/lib/libeplplot.so /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' Making all in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_acd' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_acd' Making all in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' Making all in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/html' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/html' Making all in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/text' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_clean -k dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign/ make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715' Making install in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c 'allversusall' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/allversusall' /usr/bin/install -c allversusall /build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/allversusall /bin/bash ../libtool --mode=install /usr/bin/install -c 'domainalign' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/domainalign' /usr/bin/install -c domainalign /build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/domainalign /bin/bash ../libtool --mode=install /usr/bin/install -c 'domainrep' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/domainrep' /usr/bin/install -c domainrep /build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/domainrep /bin/bash ../libtool --mode=install /usr/bin/install -c 'seqalign' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/seqalign' /usr/bin/install -c seqalign /build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/bin/seqalign make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/src' Making install in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_acd' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_acd' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/acd" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/acd" /usr/bin/install -c -m 644 'allversusall.acd' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/acd/allversusall.acd' /usr/bin/install -c -m 644 'domainalign.acd' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/acd/domainalign.acd' /usr/bin/install -c -m 644 'domainrep.acd' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/acd/domainrep.acd' /usr/bin/install -c -m 644 'seqalign.acd' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/acd/seqalign.acd' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_acd' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_acd' Making install in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' Making install in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/html' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/html' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/html/embassy/domalign" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/html/embassy/domalign" /usr/bin/install -c -m 644 'index.html' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/html/embassy/domalign/index.html' /usr/bin/install -c -m 644 'allversusall.html' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/html/embassy/domalign/allversusall.html' /usr/bin/install -c -m 644 'domainalign.html' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/html/embassy/domalign/domainalign.html' /usr/bin/install -c -m 644 'domainrep.html' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/html/embassy/domalign/domainrep.html' /usr/bin/install -c -m 644 'seqalign.html' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/html/embassy/domalign/seqalign.html' make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/html' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/html' Making install in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/text' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/text' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/programs/text" || /bin/mkdir -p "/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/programs/text" /usr/bin/install -c -m 644 'allversusall.txt' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/programs/text/allversusall.txt' /usr/bin/install -c -m 644 'domainalign.txt' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/programs/text/domainalign.txt' /usr/bin/install -c -m 644 'domainrep.txt' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/programs/text/domainrep.txt' /usr/bin/install -c -m 644 'seqalign.txt' '/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign//usr/share/EMBOSS/doc/programs/text/seqalign.txt' make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/text' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.0+20080715' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.0+20080715' dh_installdirs -pembassy-domalign dh_installdocs -pembassy-domalign dh_installexamples -pembassy-domalign dh_installman -pembassy-domalign dh_installinfo -pembassy-domalign dh_installmenu -pembassy-domalign dh_installcron -pembassy-domalign dh_installinit -pembassy-domalign dh_installdebconf -pembassy-domalign dh_installemacsen -pembassy-domalign dh_installcatalogs -pembassy-domalign dh_installpam -pembassy-domalign dh_installlogrotate -pembassy-domalign dh_installlogcheck -pembassy-domalign dh_installchangelogs -pembassy-domalign dh_installudev -pembassy-domalign dh_lintian -pembassy-domalign dh_install -pembassy-domalign dh_link -pembassy-domalign dh_installmime -pembassy-domalign dh_strip -pembassy-domalign dh_strip debug symbol extraction: all non-arch-all packages for this build platform sparc: embassy-domalign dh_strip debug symbol extraction: packages to act on: embassy-domalign dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/embassy-domalign-dbgsym/DEBIAN/control, package embassy-domalign-dbgsym, directory ./debian/embassy-domalign-dbgsym pkgstriptranslations: embassy-domalign-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `/build/buildd/embassy-domalign-0.1.0+20080715/debian/embassy-domalign-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `embassy-domalign-dbgsym' in `../embassy-domalign-dbgsym_0.1.0+20080715-1_sparc.ddeb'. dh_compress -pembassy-domalign dh_fixperms -pembassy-domalign dh_makeshlibs -pembassy-domalign dh_installdeb -pembassy-domalign dh_perl -pembassy-domalign dh_shlibdeps -pembassy-domalign dpkg-shlibdeps: warning: dependency on libz.so.1 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libX11.so.6 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libeplplot.so.3 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libjpeg.so.62 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libpng12.so.0 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libgd.so.2 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libfontconfig.so.1 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libfreetype.so.6 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libXpm.so.4 could be avoided if "debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/domainalign debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -pembassy-domalign # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/embassy-domalign/usr/share/doc ] || \ [ ! -d debian/embassy-domalign/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/embassy-domalign/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/embassy-domalign/usr/share/doc/embassy-domalign; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/embassy-domalign/usr/share/doc/embassy-domalign/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in embassy-domalign to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/embassy-domalign/usr/share/gnome/help ]; then \ cd debian/embassy-domalign && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p embassy-domalign dh_md5sums -pembassy-domalign dh_builddeb -pembassy-domalign pkgstriptranslations: processing control file: ./debian/embassy-domalign/DEBIAN/control, package embassy-domalign, directory ./debian/embassy-domalign pkgstriptranslations: embassy-domalign does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers " warning, `debian/embassy-domalign/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `embassy-domalign' in `../embassy-domalign_0.1.0+20080715-1_sparc.deb'. dpkg-genchanges -B -mUbuntu/sparc Build Daemon >../embassy-domalign_0.1.0+20080715-1_sparc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20090503-0915 Publishing debug debs. chroot-autobuild/build/buildd/embassy-domalign_0.1.0+20080715-1_sparc.deb: new debian package, version 2.0. size 108714 bytes: control archive= 1582 bytes. 1203 bytes, 22 lines control 1724 bytes, 23 lines md5sums Package: embassy-domalign Version: 0.1.0+20080715-1 Architecture: sparc Maintainer: Ubuntu MOTU Developers Original-Maintainer: Debian-Med Packaging Team Installed-Size: 664 Depends: emboss-lib, libajax6, libc6 (>= 2.6), libfontconfig1 (>= 2.4.0), libfreetype6 (>= 2.2.1), libgd2-xpm (>= 2.0.36~rc1~dfsg), libjpeg62, libnucleus6, libpng12-0 (>= 1.2.13-4), libx11-6, libxpm4, zlib1g (>= 1:1.1.4) Recommends: emboss Suggests: embassy Section: science Priority: optional Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Description: Extra EMBOSS commands for protein domain alignment The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. . Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)). chroot-autobuild/build/buildd/embassy-domalign_0.1.0+20080715-1_sparc.deb: drwxr-xr-x root/root 0 2009-05-03 09:15 ./ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/bin/ -rwxr-xr-x root/root 10108 2009-05-03 09:15 ./usr/bin/allversusall -rwxr-xr-x root/root 18560 2009-05-03 09:15 ./usr/bin/domainalign -rwxr-xr-x root/root 18404 2009-05-03 09:15 ./usr/bin/domainrep -rwxr-xr-x root/root 18584 2009-05-03 09:15 ./usr/bin/seqalign drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/acd/ -rw-r--r-- root/root 3210 2009-05-03 09:15 ./usr/share/EMBOSS/acd/allversusall.acd -rw-r--r-- root/root 4817 2009-05-03 09:15 ./usr/share/EMBOSS/acd/domainalign.acd -rw-r--r-- root/root 2319 2009-05-03 09:15 ./usr/share/EMBOSS/acd/domainrep.acd -rw-r--r-- root/root 5671 2009-05-03 09:15 ./usr/share/EMBOSS/acd/seqalign.acd drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/doc/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/embassy/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/embassy/domalign/ -rw-r--r-- root/root 1958 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/embassy/domalign/index.html -rw-r--r-- root/root 19543 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/embassy/domalign/allversusall.html -rw-r--r-- root/root 67669 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/embassy/domalign/domainalign.html -rw-r--r-- root/root 25041 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/embassy/domalign/domainrep.html -rw-r--r-- root/root 278103 2009-05-03 09:15 ./usr/share/EMBOSS/doc/html/embassy/domalign/seqalign.html drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/doc/programs/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/EMBOSS/doc/programs/text/ -rw-r--r-- root/root 5967 2009-05-03 09:15 ./usr/share/EMBOSS/doc/programs/text/allversusall.txt -rw-r--r-- root/root 30344 2009-05-03 09:15 ./usr/share/EMBOSS/doc/programs/text/domainalign.txt -rw-r--r-- root/root 8678 2009-05-03 09:15 ./usr/share/EMBOSS/doc/programs/text/domainrep.txt -rw-r--r-- root/root 23163 2009-05-03 09:15 ./usr/share/EMBOSS/doc/programs/text/seqalign.txt drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/doc/embassy-domalign/ -rw-r--r-- root/root 1264 2009-05-03 09:14 ./usr/share/doc/embassy-domalign/copyright -rw-r--r-- root/root 365 2009-05-03 09:14 ./usr/share/doc/embassy-domalign/changelog.Debian.gz drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/man/ drwxr-xr-x root/root 0 2009-05-03 09:15 ./usr/share/man/man1/ -rw-r--r-- root/root 1240 2009-05-03 09:15 ./usr/share/man/man1/domainrep.1.gz -rw-r--r-- root/root 1725 2009-05-03 09:15 ./usr/share/man/man1/seqalign.1.gz -rw-r--r-- root/root 1777 2009-05-03 09:15 ./usr/share/man/man1/domainalign.1.gz -rw-r--r-- root/root 1569 2009-05-03 09:15 ./usr/share/man/man1/allversusall.1.gz embassy-domalign_0.1.0+20080715-1_sparc.changes: Format: 1.8 Date: Tue, 21 Apr 2009 10:12:59 +0900 Source: embassy-domalign Binary: embassy-domalign Architecture: sparc Version: 0.1.0+20080715-1 Distribution: karmic Urgency: low Maintainer: Ubuntu/sparc Build Daemon Changed-By: Charles Plessy Description: embassy-domalign - Extra EMBOSS commands for protein domain alignment Changes: embassy-domalign (0.1.0+20080715-1) unstable; urgency=low . * New upstream release in which the version number was unchanged. * debian/control: - Updated my email address. - Build against EMBOSS 6. - Using debhelper 7. - Checked conformance with Policy 3.8.1 (no changes needed). - Corrected DM-Upload-Allowed. Checksums-Sha1: 2b016259936a40cb575a803321bbd3e7db5c94c5 108714 embassy-domalign_0.1.0+20080715-1_sparc.deb Checksums-Sha256: 751a885f5e0246fdb83582e9b5d253ce4c06bef7934319eb62e48e0c24c2d2ef 108714 embassy-domalign_0.1.0+20080715-1_sparc.deb Files: a13b2ff4ba86cf68984e960e65a3aef5 108714 science optional embassy-domalign_0.1.0+20080715-1_sparc.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/embassy-domalign-0.1.0+20080715 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-965472-2183012/chroot-autobuild --purge libnucleus6 groff-base libx11-data m4 libxdmcp-dev fontconfig-config defoma ttf-dejavu-core gettext file zlib1g-dev libhtml-parser-perl libgd2-xpm ttf-dejavu liburi-perl libxpm4 x11-common autotools-dev libx11-dev libcroco3 libpopt0 libajax6-dev libfreetype6 automake libjpeg62 libfreetype6-dev libgd2-xpm-dev libxcb1 x11proto-input-dev libexpat1-dev html2text libjpeg62-dev libpthread-stubs0 debhelper libfontconfig1 libxpm-dev libmagic1 libexpat1 bsdmainutils libxau6 fdupes libx11-6 xtrans-dev libglib2.0-0 libnewt0.52 x11proto-core-dev whiptail intltool libxcb1-dev libwww-perl libxdmcp6 libhtml-tree-perl po-debconf emboss-lib libxml-parser-perl libhtml-tagset-perl libxml2 libnucleus6-dev netbase pkg-config libpng12-0 man-db x11proto-kb-dev intltool-debian libfontconfig1-dev libpthread-stubs0-dev ucf cdbs libxau-dev libajax6 gettext-base ttf-dejavu-extra libpng12-dev autoconf (Reading database ... 13778 files and directories currently installed.) 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Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20090503-0916 Build needed 00:00:47, 3800k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '965472-2183012'] Scanning for processes to kill in build 965472-2183012... Scanning for processes to kill in build /home/buildd/build-965472-2183012/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '965472-2183012'] Unmounting chroot for build 965472-2183012... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '965472-2183012'] Removing build 965472-2183012