RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux twombly 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Buildd toolchain package versions: launchpad-buildd_119~APM.12.04.2 python-lpbuildd_119~APM.12.04.2. Syncing the system clock with the buildd NTP service... 25 Oct 19:44:43 ntpdate[1607]: adjust time server 10.211.37.1 offset -0.004811 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5137501', '/home/buildd/filecache-default/b26b22d5e9534fc8f0f6f99171885be7b2b8539d'] Unpacking chroot for build PACKAGEBUILD-5137501 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5137501'] Mounting chroot for build PACKAGEBUILD-5137501 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5137501', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5137501 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5137501', 'arm64'] Updating debian chroot for build PACKAGEBUILD-5137501 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-updates InRelease Hit http://archive-team.internal trusty Release Ign http://ftpmaster.internal trusty-proposed InRelease Ign http://archive-team.internal trusty/main arm64 Packages/DiffIndex Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Get:2 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty Release [49.6 kB] Ign http://archive-team.internal trusty/main Translation-en Get:6 http://ftpmaster.internal trusty-security Release [49.6 kB] Hit http://archive-team.internal trusty/main arm64 Packages Get:7 http://ftpmaster.internal trusty-updates Release [49.6 kB] Get:8 http://ftpmaster.internal trusty-proposed Release [49.6 kB] Get:9 http://ftpmaster.internal trusty/main arm64 Packages [1156 kB] Get:10 http://ftpmaster.internal trusty/universe arm64 Packages [4516 kB] Get:11 http://ftpmaster.internal trusty/main Translation-en [721 kB] Get:12 http://ftpmaster.internal trusty/universe Translation-en [3969 kB] Get:13 http://ftpmaster.internal trusty-security/main arm64 Packages [14 B] Get:14 http://ftpmaster.internal trusty-security/universe arm64 Packages [14 B] Get:15 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:16 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:17 http://ftpmaster.internal trusty-updates/main arm64 Packages [14 B] Get:18 http://ftpmaster.internal trusty-updates/universe arm64 Packages [14 B] Get:19 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:21 http://ftpmaster.internal trusty-proposed/main arm64 Packages [11.4 kB] Get:22 http://ftpmaster.internal trusty-proposed/universe arm64 Packages [49.0 kB] Get:23 http://ftpmaster.internal trusty-proposed/main Translation-en [7552 B] Get:24 http://ftpmaster.internal trusty-proposed/universe Translation-en [58.5 kB] Fetched 10.7 MB in 28s (377 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: busybox-initramfs initramfs-tools initramfs-tools-bin kmod libdrm2 libgssapi-krb5-2 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 libsqlite3-0 module-init-tools perl perl-base perl-modules tar upstart 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 11.7 MB of archives. After this operation, 2706 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! perl perl-base perl-modules tar libsqlite3-0 libdrm2 libkmod2 kmod module-init-tools libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libldap-2.4-2 libmpfr4 busybox-initramfs initramfs-tools initramfs-tools-bin upstart Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main perl arm64 5.18.1-4 [3937 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main perl-base arm64 5.18.1-4 [1473 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.1-4 [3926 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main tar arm64 1.27-1 [213 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 arm64 3.8.0.2-1ubuntu1 [346 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 arm64 2.4.46-3ubuntu1 [22.8 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libkmod2 arm64 15-0ubuntu2 [36.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main kmod arm64 15-0ubuntu2 [85.9 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main module-init-tools all 15-0ubuntu2 [1874 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libk5crypto3 arm64 1.11.3+dfsg-3ubuntu1 [98.0 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssapi-krb5-2 arm64 1.11.3+dfsg-3ubuntu1 [114 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5-3 arm64 1.11.3+dfsg-3ubuntu1 [309 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkrb5support0 arm64 1.11.3+dfsg-3ubuntu1 [30.1 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libldap-2.4-2 arm64 2.4.31-1+nmu2ubuntu4 [159 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libmpfr4 arm64 3.1.2-1 [207 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main busybox-initramfs arm64 1:1.20.0-9ubuntu2 [186 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools all 0.103ubuntu2 [49.2 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main initramfs-tools-bin arm64 0.103ubuntu2 [9510 B] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main upstart arm64 1.10-0ubuntu8 [521 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.7 MB in 22s (517 kB/s) (Reading database ... 11942 files and directories currently installed.) Preparing to replace perl 5.14.2-21build1 (using .../perl_5.18.1-4_arm64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21build1 (using .../perl-base_5.18.1-4_arm64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-4) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21build1 (using .../perl-modules_5.18.1-4_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace tar 1.26+dfsg-8 (using .../archives/tar_1.27-1_arm64.deb) ... Unpacking replacement tar ... Setting up tar (1.27-1) ... (Reading database ... 11882 files and directories currently installed.) Preparing to replace libsqlite3-0:arm64 3.7.17-1ubuntu1 (using .../libsqlite3-0_3.8.0.2-1ubuntu1_arm64.deb) ... Unpacking replacement libsqlite3-0:arm64 ... Preparing to replace libdrm2:arm64 2.4.46-3 (using .../libdrm2_2.4.46-3ubuntu1_arm64.deb) ... Unpacking replacement libdrm2:arm64 ... Preparing to replace libkmod2:arm64 9-3ubuntu1 (using .../libkmod2_15-0ubuntu2_arm64.deb) ... Unpacking replacement libkmod2:arm64 ... Preparing to replace kmod 9-3ubuntu1 (using .../kmod_15-0ubuntu2_arm64.deb) ... Unpacking replacement kmod ... Preparing to replace module-init-tools 9-3ubuntu1 (using .../module-init-tools_15-0ubuntu2_all.deb) ... Unpacking replacement module-init-tools ... Preparing to replace libk5crypto3:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libk5crypto3_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libk5crypto3:arm64 ... Preparing to replace libgssapi-krb5-2:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libgssapi-krb5-2_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libgssapi-krb5-2:arm64 ... Preparing to replace libkrb5-3:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5-3_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libkrb5-3:arm64 ... Preparing to replace libkrb5support0:arm64 1.10.1+dfsg-6.1ubuntu1 (using .../libkrb5support0_1.11.3+dfsg-3ubuntu1_arm64.deb) ... Unpacking replacement libkrb5support0:arm64 ... Preparing to replace libldap-2.4-2:arm64 2.4.31-1+nmu2ubuntu3 (using .../libldap-2.4-2_2.4.31-1+nmu2ubuntu4_arm64.deb) ... Unpacking replacement libldap-2.4-2:arm64 ... Preparing to replace libmpfr4:arm64 3.1.1-2 (using .../libmpfr4_3.1.2-1_arm64.deb) ... Unpacking replacement libmpfr4:arm64 ... Preparing to replace busybox-initramfs 1:1.20.0-9ubuntu1 (using .../busybox-initramfs_1%3a1.20.0-9ubuntu2_arm64.deb) ... Unpacking replacement busybox-initramfs ... Preparing to replace initramfs-tools 0.103ubuntu1 (using .../initramfs-tools_0.103ubuntu2_all.deb) ... Unpacking replacement initramfs-tools ... Preparing to replace initramfs-tools-bin 0.103ubuntu1 (using .../initramfs-tools-bin_0.103ubuntu2_arm64.deb) ... Unpacking replacement initramfs-tools-bin ... Preparing to replace upstart 1.10-0ubuntu7 (using .../upstart_1.10-0ubuntu8_arm64.deb) ... Unpacking replacement upstart ... Setting up libsqlite3-0:arm64 (3.8.0.2-1ubuntu1) ... Setting up libdrm2:arm64 (2.4.46-3ubuntu1) ... Setting up libkmod2:arm64 (15-0ubuntu2) ... Setting up kmod (15-0ubuntu2) ... Setting up module-init-tools (15-0ubuntu2) ... Setting up libkrb5support0:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libk5crypto3:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libkrb5-3:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libldap-2.4-2:arm64 (2.4.31-1+nmu2ubuntu4) ... Setting up libmpfr4:arm64 (3.1.2-1) ... Setting up busybox-initramfs (1:1.20.0-9ubuntu2) ... Setting up initramfs-tools-bin (0.103ubuntu2) ... Setting up initramfs-tools (0.103ubuntu2) ... update-initramfs: deferring update (trigger activated) Setting up upstart (1.10-0ubuntu8) ... Setting up perl-modules (5.18.1-4) ... Setting up perl (5.18.1-4) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5137501', 'arm64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'embassy-domalign_0.1.650-1.dsc'] Initiating build PACKAGEBUILD-5137501 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Automatic build of embassy-domalign_0.1.650-1 on twombly by sbuild/arm64 1.170.5 Build started at 20131025-1945 ****************************************************************************** embassy-domalign_0.1.650-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), emboss-lib (>= 6.6.0-1~), emboss-lib (<< 6.6.1~), libx11-dev, libgd2-xpm-dev, libmysqlclient-dev, libpq-dev Checking for already installed source dependencies... debhelper: missing emboss-lib: missing emboss-lib: missing libx11-dev: missing libgd2-xpm-dev: missing libmysqlclient-dev: missing libpq-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper emboss-lib emboss-lib libx11-dev libgd2-xpm-dev libmysqlclient-dev libpq-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils comerr-dev dh-apparmor dh-python file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian krb5-multidev libasprintf0c2 libcroco3 libexpat1 libexpat1-dev libffi6 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd-dev libgd3 libglib2.0-0 libgssrpc4 libhpdf-2.2.1 libice-dev libice6 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-7 liblzma-dev libmagic1 libmysqlclient18 libpipeline1 libpng12-dev libpopt0 libpq5 libpthread-stubs0-dev libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsm-dev libsm6 libssl-dev libssl1.0.0 libtiff5 libtiff5-dev libtiffxx5 libunistring0 libvpx-dev libvpx1 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 man-db mime-support mysql-common pkg-config po-debconf python3 python3-minimal python3.3 python3.3-minimal ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: wamerican wordlist whois vacation doc-base dh-make gettext-doc groff krb5-doc libgd-tools krb5-user libice-doc liblzma-doc postgresql-doc-9.3 libsm-doc libxcb-doc libxt-doc less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info libssl-doc libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof bsdmainutils comerr-dev debhelper dh-apparmor dh-python emboss-lib file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian krb5-multidev libasprintf0c2 libcroco3 libexpat1 libexpat1-dev libffi6 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd-dev libgd2-xpm-dev libgd3 libglib2.0-0 libgssrpc4 libhpdf-2.2.1 libice-dev libice6 libjbig-dev libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit8 libkadm5srv-mit8 libkdb5-7 liblzma-dev libmagic1 libmysqlclient-dev libmysqlclient18 libpipeline1 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0-dev libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsm-dev libsm6 libssl-dev libssl1.0.0 libtiff5 libtiff5-dev libtiffxx5 libunistring0 libvpx-dev libvpx1 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 libxpm-dev libxpm4 libxt-dev libxt6 man-db mime-support mysql-common pkg-config po-debconf python3 python3-minimal python3.3 python3.3-minimal ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 28.4 MB of archives. After this operation, 107 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libpopt0 libssl1.0.0 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libgssrpc4 libkdb5-7 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxml2 groff-base bsdmainutils man-db ucf fonts-dejavu-core ttf-dejavu-core fontconfig-config libcroco3 libfreetype6 libfontconfig1 libjpeg-turbo8 libjpeg8 libjbig0 libtiff5 libvpx1 libxpm4 libgd3 x11-common libice6 libkadm5clnt-mit8 libkadm5srv-mit8 mysql-common libmysqlclient18 libsm6 libtiffxx5 libunistring0 libxt6 libjbig-dev python3.3 python3-minimal libpython3-stdlib python3 dh-python file gettext-base gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libhpdf-2.2.1 libpq5 emboss-lib comerr-dev krb5-multidev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libpng12-dev libjpeg-turbo8-dev libjpeg8-dev libjpeg-dev xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0-dev libxcb1-dev libx11-dev libxpm-dev libice-dev libsm-dev libxt-dev libvpx-dev liblzma-dev libtiff5-dev libgd-dev libgd2-xpm-dev libmysqlclient-dev libssl-dev libpq-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 arm64 2.1.0-4 [114 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 arm64 3.0.13-4 [19.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 arm64 5.11-2ubuntu4 [163 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpopt0 arm64 1.16-7ubuntu3 [25.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 arm64 1.0.1e-3ubuntu1 [860 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal arm64 3.3.2-7ubuntu3 [609 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib arm64 3.3.2-7ubuntu3 [2568 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal arm64 3.3.2-7ubuntu3 [1431 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 arm64 0.18.3.1-1ubuntu1 [7172 B] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 arm64 2.38.1-1 [827 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgssrpc4 arm64 1.11.3+dfsg-3ubuntu1 [53.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkdb5-7 arm64 1.11.3+dfsg-3ubuntu1 [36.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 arm64 1.2.4-1 [24.5 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libxau6 arm64 1:1.0.8-1 [7590 B] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp6 arm64 1:1.1.1-1 [11.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1 arm64 1.9.1-3ubuntu1 [35.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libx11-data all 2:1.6.2-1ubuntu1 [180 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main libx11-6 arm64 2:1.6.2-1ubuntu1 [708 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 arm64 2.9.1+dfsg1-3ubuntu2 [588 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main groff-base arm64 1.22.2-3 [688 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main man-db arm64 2.6.5-2 [678 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main ucf all 3.0027+nmu1 [56.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main fonts-dejavu-core all 2.33+svn2514-3ubuntu1 [1019 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main ttf-dejavu-core all 2.33+svn2514-3ubuntu1 [2964 B] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig-config all 2.10.93-0ubuntu1 [50.5 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 arm64 0.6.8-2 [64.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6 arm64 2.4.12-0ubuntu1 [313 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1 arm64 2.10.93-0ubuntu1 [128 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8 arm64 1.3.0-0ubuntu1 [101 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libjbig0 arm64 2.0-2ubuntu1 [26.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5 arm64 4.0.3-5ubuntu1 [151 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libvpx1 arm64 1.2.0-2 [227 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libxpm4 arm64 1:3.5.10-1 [33.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libgd3 arm64 2.1.0-3 [129 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main x11-common all 1:7.7+1ubuntu6 [58.6 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libice6 arm64 2:1.0.8-2 [40.0 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkadm5clnt-mit8 arm64 1.11.3+dfsg-3ubuntu1 [38.4 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libkadm5srv-mit8 arm64 1.11.3+dfsg-3ubuntu1 [53.8 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main mysql-common all 5.5.34-0ubuntu1 [13.0 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libmysqlclient18 arm64 5.5.34-0ubuntu1 [871 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libsm6 arm64 2:1.2.1-2 [15.9 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main libtiffxx5 arm64 4.0.3-5ubuntu1 [6350 B] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 arm64 0.9.3-5ubuntu1 [403 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libxt6 arm64 1:1.1.4-1 [156 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main libjbig-dev arm64 2.0-2ubuntu1 [6556 B] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 arm64 3.3.2-7ubuntu3 [129 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal arm64 3.3.2-14ubuntu1 [26.4 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib arm64 3.3.2-14ubuntu1 [8144 B] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main python3 arm64 3.3.2-14ubuntu1 [9144 B] Get:53 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu1 [58.5 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main file arm64 5.11-2ubuntu4 [18.2 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base arm64 0.18.3.1-1ubuntu1 [64.0 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main gettext arm64 0.18.3.1-1ubuntu1 [983 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu32 [23.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu32 [7830 B] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20130921ubuntu1 [635 kB] Get:62 http://ftpmaster.internal/ubuntu/ trusty/universe libhpdf-2.2.1 arm64 2.2.1-1ubuntu1 [498 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main libpq5 arm64 9.3.1-1 [61.1 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/universe emboss-lib arm64 6.6.0-1 [2459 kB] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main comerr-dev arm64 2.1-1.42.8-1ubuntu1 [43.4 kB] Get:66 http://ftpmaster.internal/ubuntu/ trusty-proposed/main krb5-multidev arm64 1.11.3+dfsg-3ubuntu1 [134 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1-dev arm64 2.1.0-4 [183 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty/main zlib1g-dev arm64 1:1.2.8.dfsg-1ubuntu1 [179 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6-dev arm64 2.4.12-0ubuntu1 [783 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main pkg-config arm64 0.26-1ubuntu4 [39.7 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1-dev arm64 2.10.93-0ubuntu1 [707 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-dev arm64 1.2.49-4ubuntu1 [199 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8-dev arm64 1.3.0-0ubuntu1 [356 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-core-dev all 7.0.24-1 [748 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main libxau-dev arm64 1:1.0.8-1 [9768 B] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp-dev arm64 1:1.1.1-1 [26.2 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-input-dev all 2.3-1 [139 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main xtrans-dev all 1.2.7-1 [84.3 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main libpthread-stubs0-dev arm64 0.3-4 [4078 B] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1-dev arm64 1.9.1-3ubuntu1 [91.4 kB] Get:85 http://ftpmaster.internal/ubuntu/ trusty/main libx11-dev arm64 2:1.6.2-1ubuntu1 [844 kB] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main libxpm-dev arm64 1:3.5.10-1 [91.3 kB] Get:87 http://ftpmaster.internal/ubuntu/ trusty/main libice-dev arm64 2:1.0.8-2 [52.2 kB] Get:88 http://ftpmaster.internal/ubuntu/ trusty/main libsm-dev arm64 2:1.2.1-2 [17.9 kB] Get:89 http://ftpmaster.internal/ubuntu/ trusty/main libxt-dev arm64 1:1.1.4-1 [442 kB] Get:90 http://ftpmaster.internal/ubuntu/ trusty/main libvpx-dev arm64 1.2.0-2 [286 kB] Get:91 http://ftpmaster.internal/ubuntu/ trusty/main liblzma-dev arm64 5.1.1alpha+20120614-2ubuntu1 [153 kB] Get:92 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5-dev arm64 4.0.3-5ubuntu1 [301 kB] Get:93 http://ftpmaster.internal/ubuntu/ trusty/main libgd-dev arm64 2.1.0-3 [274 kB] Get:94 http://ftpmaster.internal/ubuntu/ trusty/main libgd2-xpm-dev all 2.1.0-3 [1132 B] Get:95 http://ftpmaster.internal/ubuntu/ trusty/main libmysqlclient-dev arm64 5.5.34-0ubuntu1 [1319 kB] Get:96 http://ftpmaster.internal/ubuntu/ trusty/main libssl-dev arm64 1.0.1e-3ubuntu1 [1416 kB] Get:97 http://ftpmaster.internal/ubuntu/ trusty/main libpq-dev arm64 9.3.1-1 [151 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.4 MB in 1min 5s (437 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11885 files and directories currently installed.) Unpacking libexpat1:arm64 (from .../libexpat1_2.1.0-4_arm64.deb) ... Selecting previously unselected package libffi6:arm64. Unpacking libffi6:arm64 (from .../libffi6_3.0.13-4_arm64.deb) ... Selecting previously unselected package libmagic1:arm64. Unpacking libmagic1:arm64 (from .../libmagic1_5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package libpopt0:arm64. Unpacking libpopt0:arm64 (from .../libpopt0_1.16-7ubuntu3_arm64.deb) ... Selecting previously unselected package libssl1.0.0:arm64. Unpacking libssl1.0.0:arm64 (from .../libssl1.0.0_1.0.1e-3ubuntu1_arm64.deb) ... Selecting previously unselected package libpython3.3-minimal:arm64. Unpacking libpython3.3-minimal:arm64 (from .../libpython3.3-minimal_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... 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Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:arm64 (3.3.2-7ubuntu3) ... Setting up python3.3-minimal (3.3.2-7ubuntu3) ... Setting up libasprintf0c2:arm64 (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:arm64 (2.38.1-1) ... No schema files found: doing nothing. Setting up libgssrpc4:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libkdb5-7:arm64 (1.11.3+dfsg-3ubuntu1) ... Setting up libpipeline1:arm64 (1.2.4-1) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up libxdmcp6:arm64 (1:1.1.1-1) ... Setting up libxcb1:arm64 (1.9.1-3ubuntu1) ... Setting up libx11-data (2:1.6.2-1ubuntu1) ... Setting up libx11-6:arm64 (2:1.6.2-1ubuntu1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... 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Setting up debhelper (9.20130921ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.2-1ubuntu2 g++-4.8_4.8.2-1ubuntu2 binutils_2.23.90.20131017-1ubuntu1 libstdc++-4.8-dev_4.8.2-1ubuntu2 libstdc++6_4.8.2-1ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Thu Sep 12 07:57:19 2013 UTC using DSA key ID C09FD35A gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./embassy-domalign_0.1.650-1.dsc dpkg-source: info: extracting embassy-domalign in embassy-domalign-0.1.650 dpkg-source: info: unpacking embassy-domalign_0.1.650.orig.tar.gz dpkg-source: info: unpacking embassy-domalign_0.1.650-1.debian.tar.gz dpkg-buildpackage: source package embassy-domalign dpkg-buildpackage: source version 0.1.650-1 dpkg-source --before-build embassy-domalign-0.1.650 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build-arch dh build-arch dh_testdir -a debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' dh_auto_configure -- --enable-systemlibs configure: WARNING: unrecognized options: --disable-maintainer-mode checking for gawk... no checking for mawk... mawk checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for icpc... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... no checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... no checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' dh_auto_build -a make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' Making all in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' make all-am make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c allversusall.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o allversusall allversusall.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o allversusall allversusall.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c domainalign.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o domainalign domainalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o domainalign domainalign.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c domainrep.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o domainrep domainrep.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o domainrep domainrep.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm gcc -DHAVE_CONFIG_H -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -D_FORTIFY_SOURCE=2 -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -c seqalign.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -Wl,--rpath,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o seqalign seqalign.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -Wformat -Werror=format-security -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -Wl,--rpath -Wl,/usr/lib/emboss/lib -O2 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,--as-needed -o seqalign seqalign.o -L/usr/lib/emboss/lib -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lgd -lpng -lz -lm make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' Making all in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' Making all in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' Making all in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' Making all in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' dh_auto_test -a make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' Making check in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' Making check in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[2]: Nothing to be done for `check'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' Making check in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' Making check in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' Making check in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Nothing to be done for `check'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[3]: Nothing to be done for `check-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[2]: Nothing to be done for `check-am'. make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make[1]: Entering directory `/build/buildd/embassy-domalign-0.1.650' Making install in src make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/src' /bin/mkdir -p '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c allversusall domainalign domainrep seqalign '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin' libtool: install: /usr/bin/install -c allversusall /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/allversusall libtool: install: /usr/bin/install -c domainalign /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/domainalign libtool: install: /usr/bin/install -c domainrep /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/domainrep libtool: install: /usr/bin/install -c seqalign /build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/bin/seqalign make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/src' Making install in emboss_acd make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[3]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/acd' /usr/bin/install -c -m 644 allversusall.acd domainalign.acd domainrep.acd seqalign.acd '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/acd' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_acd' Making install in emboss_doc make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' Making install in html make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/html/embassy/domalign' /usr/bin/install -c -m 644 index.html allversusall.html domainalign.html domainrep.html seqalign.html '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/html/embassy/domalign' make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/html' Making install in text make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[4]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/programs/text' /usr/bin/install -c -m 644 allversusall.txt domainalign.txt domainrep.txt seqalign.txt '/build/buildd/embassy-domalign-0.1.650/debian/embassy-domalign/usr/share/EMBOSS/doc/programs/text' make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[4]: Entering directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[3]: Entering directory `/build/buildd/embassy-domalign-0.1.650' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[2]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' make[1]: Leaving directory `/build/buildd/embassy-domalign-0.1.650' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: embassy-domalign dh_strip debug symbol extraction: packages to act on: embassy-domalign dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `embassy-domalign-dbgsym' in `../embassy-domalign-dbgsym_0.1.650-1_arm64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall debian/embassy-domalign/usr/bin/domainalign were not linked against libensembl.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall debian/embassy-domalign/usr/bin/domainalign were not linked against libeplplot.so.3 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall debian/embassy-domalign/usr/bin/domainalign were not linked against libX11.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall debian/embassy-domalign/usr/bin/domainalign were not linked against libajaxg.so.6 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall debian/embassy-domalign/usr/bin/domainalign were not linked against libepcre.so.7 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/embassy-domalign/usr/bin/domainrep debian/embassy-domalign/usr/bin/seqalign debian/embassy-domalign/usr/bin/allversusall debian/embassy-domalign/usr/bin/domainalign were not linked against libajaxdb.so.6 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 118 pkgstriptranslations: processing embassy-domalign (in debian/embassy-domalign); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/embassy-domalign/DEBIAN/control, package embassy-domalign, directory debian/embassy-domalign pkgstripfiles: PNG optimization for package embassy-domalign took 0 s dpkg-deb: warning: 'debian/embassy-domalign/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `embassy-domalign' in `../embassy-domalign_0.1.650-1_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../embassy-domalign_0.1.650-1_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build embassy-domalign-0.1.650 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131025-1947 Publishing debug debs. chroot-autobuild/build/buildd/embassy-domalign_0.1.650-1_arm64.deb: new debian package, version 2.0. size 114496 bytes: control archive=1536 bytes. 1064 bytes, 22 lines control 1807 bytes, 24 lines md5sums Package: embassy-domalign Version: 0.1.650-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 638 Depends: emboss-lib (>= 6.6.0-1~), libc6 (>= 2.17), libx11-6, emboss-lib (<< 6.6.1~) Recommends: emboss Suggests: embassy Section: science Priority: optional Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN Description: Extra EMBOSS commands for protein domain alignment The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress. . Applications in the current domalign release are allversusall (sequence similarity data from all-versus-all comparison), domainalign (generates alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file to identify representative structures) and seqalign (extend alignments (DAF file) with sequences (DHF file)). chroot-autobuild/build/buildd/embassy-domalign_0.1.650-1_arm64.deb: drwxr-xr-x root/root 0 2013-10-25 19:47 ./ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/lintian/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 182 2011-05-25 06:35 ./usr/share/lintian/overrides/embassy-domalign drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/acd/ -rw-r--r-- root/root 6584 2013-10-25 19:47 ./usr/share/EMBOSS/acd/seqalign.acd -rw-r--r-- root/root 3811 2013-10-25 19:47 ./usr/share/EMBOSS/acd/allversusall.acd -rw-r--r-- root/root 6073 2013-10-25 19:47 ./usr/share/EMBOSS/acd/domainalign.acd -rw-r--r-- root/root 2821 2013-10-25 19:47 ./usr/share/EMBOSS/acd/domainrep.acd drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/doc/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/embassy/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/embassy/domalign/ -rw-r--r-- root/root 72730 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/embassy/domalign/domainalign.html -rw-r--r-- root/root 28731 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/embassy/domalign/domainrep.html -rw-r--r-- root/root 1958 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/embassy/domalign/index.html -rw-r--r-- root/root 282810 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/embassy/domalign/seqalign.html -rw-r--r-- root/root 22798 2013-10-25 19:47 ./usr/share/EMBOSS/doc/html/embassy/domalign/allversusall.html drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/doc/programs/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/EMBOSS/doc/programs/text/ -rw-r--r-- root/root 23698 2013-10-25 19:47 ./usr/share/EMBOSS/doc/programs/text/seqalign.txt -rw-r--r-- root/root 30650 2013-10-25 19:47 ./usr/share/EMBOSS/doc/programs/text/domainalign.txt -rw-r--r-- root/root 6260 2013-10-25 19:47 ./usr/share/EMBOSS/doc/programs/text/allversusall.txt -rw-r--r-- root/root 8773 2013-10-25 19:47 ./usr/share/EMBOSS/doc/programs/text/domainrep.txt drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/man/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/man/man1/ -rw-r--r-- root/root 1899 2013-10-25 19:47 ./usr/share/man/man1/seqalign.1e.gz -rw-r--r-- root/root 1413 2013-10-25 19:47 ./usr/share/man/man1/domainrep.1e.gz -rw-r--r-- root/root 1951 2013-10-25 19:47 ./usr/share/man/man1/domainalign.1e.gz -rw-r--r-- root/root 1749 2013-10-25 19:47 ./usr/share/man/man1/allversusall.1e.gz drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/share/doc/embassy-domalign/ -rw-r--r-- root/root 1238 2012-06-20 20:42 ./usr/share/doc/embassy-domalign/copyright -rw-r--r-- root/root 1383 2013-09-12 07:55 ./usr/share/doc/embassy-domalign/changelog.Debian.gz drwxr-xr-x root/root 0 2013-10-25 19:47 ./usr/bin/ -rwxr-xr-x root/root 14752 2013-10-25 19:47 ./usr/bin/domainrep -rwxr-xr-x root/root 10592 2013-10-25 19:47 ./usr/bin/allversusall -rwxr-xr-x root/root 18976 2013-10-25 19:47 ./usr/bin/seqalign -rwxr-xr-x root/root 23056 2013-10-25 19:47 ./usr/bin/domainalign embassy-domalign_0.1.650-1_arm64.changes: Format: 1.8 Date: Thu, 12 Sep 2013 09:51:35 +0200 Source: embassy-domalign Binary: embassy-domalign Architecture: arm64 Version: 0.1.650-1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Andreas Tille Description: embassy-domalign - Extra EMBOSS commands for protein domain alignment Changes: embassy-domalign (0.1.650-1) unstable; urgency=low . * New upstream version * debian/control: - cme fix dpkg-control - Bumped versioned depends from emboss-lib - anonscm in VCS fields Checksums-Sha1: 6ed821c58ce5f8de75faa492293b0162f2bc7f3e 114496 embassy-domalign_0.1.650-1_arm64.deb Checksums-Sha256: 459bbb3957d0ae17fda8ea7a68de69bebb17de86489acaed980bc3876d86a889 114496 embassy-domalign_0.1.650-1_arm64.deb Files: a63668efb7931e0e3f0f25e82fab35d9 114496 science optional embassy-domalign_0.1.650-1_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131025-1947 Build needed 00:00:33, 4308k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5137501'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5137501/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5137501'] Unmounting chroot for build PACKAGEBUILD-5137501... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5137501'] Removing build PACKAGEBUILD-5137501