RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'eeb19dc97a78cc4feb4691d28929d54c63bac167', '/home/buildd/filecache-default/4b5c49e7847975aad50de8925d7d18ee889b3105'] Synching the system clock with the buildd NTP service... 18 Oct 07:53:11 ntpdate[4369]: adjust time server 10.211.37.1 offset -0.000011 sec Unpacking chroot for build eeb19dc97a78cc4feb4691d28929d54c63bac167 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'eeb19dc97a78cc4feb4691d28929d54c63bac167'] Mounting chroot for build eeb19dc97a78cc4feb4691d28929d54c63bac167 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'eeb19dc97a78cc4feb4691d28929d54c63bac167', 'deb http://ftpmaster.internal/ubuntu natty main restricted universe multiverse'] Overriding sources.list in build-eeb19dc97a78cc4feb4691d28929d54c63bac167 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'eeb19dc97a78cc4feb4691d28929d54c63bac167', 'amd64'] Updating debian chroot for build eeb19dc97a78cc4feb4691d28929d54c63bac167 Get:1 http://ftpmaster.internal natty Release.gpg [198B] Ign http://ftpmaster.internal/ubuntu/ natty/main Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/multiverse Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/restricted Translation-en Ign http://ftpmaster.internal/ubuntu/ natty/universe Translation-en Get:2 http://ftpmaster.internal natty Release [39.8kB] Get:3 http://ftpmaster.internal natty/main amd64 Packages [1497kB] Get:4 http://ftpmaster.internal natty/restricted amd64 Packages [6002B] Get:5 http://ftpmaster.internal natty/universe amd64 Packages [5803kB] Get:6 http://ftpmaster.internal natty/multiverse amd64 Packages [181kB] Fetched 7527kB in 2s (3577kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: cpp-4.5 g++-4.5 gcc-4.5 libcloog-ppl0 libelfg0 libgmpxx4ldbl libmpc2 libppl-c2 libppl7 libstdc++6-4.5-dev The following packages will be upgraded: adduser apt apt-transport-https base-files binutils busybox-initramfs ca-certificates cpp cpp-4.4 debianutils dpkg dpkg-dev g++ g++-4.4 gcc gcc-4.4 gcc-4.4-base gcc-4.5-base gnupg gpgv libacl1 libalgorithm-diff-perl libalgorithm-merge-perl libc-bin libc-dev-bin libc6 libc6-dev libcurl3-gnutls libdb4.8 libdpkg-perl libgcc1 libgcrypt11 libglib2.0-0 libgomp1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 liblzma2 libpcre3 libselinux1 libssl0.9.8 libstdc++6 libstdc++6-4.4-dev libudev0 libusb-0.1-4 linux-libc-dev openssl perl perl-base perl-modules pkgbinarymangler python2.6-minimal tzdata udev xz-utils 56 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. Need to get 73.1MB of archives. After this operation, 54.6MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! base-files debianutils dpkg perl-modules libc-dev-bin libc6-dev libc-bin libc6 linux-libc-dev libgomp1 gcc-4.5-base libgcc1 libstdc++6 tzdata libdb4.8 perl perl-base apt libssl0.9.8 libacl1 liblzma2 libselinux1 python2.6-minimal xz-utils libusb-0.1-4 gpgv gnupg adduser busybox-initramfs libpcre3 libglib2.0-0 libudev0 udev libgcrypt11 libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 openssl ca-certificates libcurl3-gnutls apt-transport-https libgmpxx4ldbl libppl7 libppl-c2 libcloog-ppl0 libelfg0 libmpc2 cpp-4.5 cpp g++-4.4 libstdc++6-4.4-dev gcc-4.4 cpp-4.4 gcc-4.4-base binutils dpkg-dev libdpkg-perl gcc-4.5 gcc libstdc++6-4.5-dev g++-4.5 g++ libalgorithm-diff-perl libalgorithm-merge-perl pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main base-files amd64 5.0.0ubuntu24 [70.2kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main debianutils amd64 3.4.1 [51.4kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main dpkg amd64 1.15.8.5ubuntu1 [2273kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main perl-modules all 5.10.1-15ubuntu2 [3483kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main libc-dev-bin amd64 2.12.1-0ubuntu7 [227kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main libc6-dev amd64 2.12.1-0ubuntu7 [2726kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main libc-bin amd64 2.12.1-0ubuntu7 [817kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main libc6 amd64 2.12.1-0ubuntu7 [4259kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main linux-libc-dev amd64 2.6.36-0.4 [805kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main libgomp1 amd64 4.5.1-9ubuntu1 [25.4kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5-base amd64 4.5.1-9ubuntu1 [123kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main libgcc1 amd64 1:4.5.1-9ubuntu1 [42.3kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6 amd64 4.5.1-9ubuntu1 [326kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main tzdata all 2010m-1 [779kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main libdb4.8 amd64 4.8.30-2 [680kB] Get:16 http://ftpmaster.internal/ubuntu/ natty/main perl amd64 5.10.1-15ubuntu2 [4457kB] Get:17 http://ftpmaster.internal/ubuntu/ natty/main perl-base amd64 5.10.1-15ubuntu2 [1056kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main apt amd64 0.8.7ubuntu1 [2121kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main libssl0.9.8 amd64 0.9.8o-1ubuntu4.1 [923kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main libacl1 amd64 2.2.49-4 [28.4kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main liblzma2 amd64 4.999.9beta+20100810-1 [171kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main libselinux1 amd64 2.0.96-1 [88.8kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main python2.6-minimal amd64 2.6.6-6ubuntu1 [1530kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main xz-utils amd64 4.999.9beta+20100810-1 [169kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main libusb-0.1-4 amd64 2:0.1.12-16 [21.9kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main gpgv amd64 1.4.10-4ubuntu1 [228kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main gnupg amd64 1.4.10-4ubuntu1 [1132kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main adduser all 3.112+nmu1ubuntu1 [120kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main busybox-initramfs amd64 1:1.17.1-4ubuntu1 [190kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main libpcre3 amd64 8.02-1.1 [234kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main libglib2.0-0 amd64 2.27.0-1ubuntu1 [1542kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main libudev0 amd64 163-1 [129kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main udev amd64 163-1 [506kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main libgcrypt11 amd64 1.4.5-2ubuntu2 [275kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main libk5crypto3 amd64 1.8.1+dfsg-5ubuntu0.1 [104kB] Get:36 http://ftpmaster.internal/ubuntu/ natty/main libgssapi-krb5-2 amd64 1.8.1+dfsg-5ubuntu0.1 [128kB] Get:37 http://ftpmaster.internal/ubuntu/ natty/main libkrb5-3 amd64 1.8.1+dfsg-5ubuntu0.1 [367kB] Get:38 http://ftpmaster.internal/ubuntu/ natty/main libkrb5support0 amd64 1.8.1+dfsg-5ubuntu0.1 [44.1kB] Get:39 http://ftpmaster.internal/ubuntu/ natty/main openssl amd64 0.9.8o-1ubuntu4.1 [407kB] Get:40 http://ftpmaster.internal/ubuntu/ natty/main ca-certificates all 20090814+nmu2 [154kB] Get:41 http://ftpmaster.internal/ubuntu/ natty/main libcurl3-gnutls amd64 7.21.1-1ubuntu1 [274kB] Get:42 http://ftpmaster.internal/ubuntu/ natty/main apt-transport-https amd64 0.8.7ubuntu1 [93.7kB] Get:43 http://ftpmaster.internal/ubuntu/ natty/main libgmpxx4ldbl amd64 2:4.3.2+dfsg-1ubuntu1 [19.0kB] Get:44 http://ftpmaster.internal/ubuntu/ natty/main libppl7 amd64 0.10.2-7ubuntu1 [367kB] Get:45 http://ftpmaster.internal/ubuntu/ natty/main libppl-c2 amd64 0.10.2-7ubuntu1 [1351kB] Get:46 http://ftpmaster.internal/ubuntu/ natty/main libcloog-ppl0 amd64 0.15.9-2 [62.0kB] Get:47 http://ftpmaster.internal/ubuntu/ natty/main libelfg0 amd64 0.8.13-1 [57.8kB] Get:48 http://ftpmaster.internal/ubuntu/ natty/main libmpc2 amd64 0.8.2-1build1 [36.5kB] Get:49 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.5 amd64 4.5.1-9ubuntu1 [4593kB] Get:50 http://ftpmaster.internal/ubuntu/ natty/main cpp amd64 4:4.5.1-1ubuntu2 [37.2kB] Get:51 http://ftpmaster.internal/ubuntu/ natty/main g++-4.4 amd64 4.4.5-2ubuntu1 [5605kB] Get:52 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.4-dev amd64 4.4.5-2ubuntu1 [1529kB] Get:53 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.4 amd64 4.4.5-2ubuntu1 [2960kB] Get:54 http://ftpmaster.internal/ubuntu/ natty/main cpp-4.4 amd64 4.4.5-2ubuntu1 [3973kB] Get:55 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.4-base amd64 4.4.5-2ubuntu1 [126kB] Get:56 http://ftpmaster.internal/ubuntu/ natty/main binutils amd64 2.20.51.20101014-0ubuntu1 [2606kB] Get:57 http://ftpmaster.internal/ubuntu/ natty/main dpkg-dev all 1.15.8.5ubuntu1 [782kB] Get:58 http://ftpmaster.internal/ubuntu/ natty/main libdpkg-perl all 1.15.8.5ubuntu1 [511kB] Get:59 http://ftpmaster.internal/ubuntu/ natty/main gcc-4.5 amd64 4.5.1-9ubuntu1 [7198kB] Get:60 http://ftpmaster.internal/ubuntu/ natty/main gcc amd64 4:4.5.1-1ubuntu2 [5060B] Get:61 http://ftpmaster.internal/ubuntu/ natty/main libstdc++6-4.5-dev amd64 4.5.1-9ubuntu1 [1572kB] Get:62 http://ftpmaster.internal/ubuntu/ natty/main g++-4.5 amd64 4.5.1-9ubuntu1 [6491kB] Get:63 http://ftpmaster.internal/ubuntu/ natty/main g++ amd64 4:4.5.1-1ubuntu2 [1448B] Get:64 http://ftpmaster.internal/ubuntu/ natty/main libalgorithm-diff-perl all 1.19.02-2 [50.7kB] Get:65 http://ftpmaster.internal/ubuntu/ natty/main libalgorithm-merge-perl all 0.08-2 [12.7kB] Get:66 http://ftpmaster.internal/ubuntu/ natty/main pkgbinarymangler all 77 [20.2kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 73.1MB in 2s (35.0MB/s) (Reading database ... 13456 files and directories currently installed.) Preparing to replace base-files 5.0.0ubuntu23 (using .../base-files_5.0.0ubuntu24_amd64.deb) ... Unpacking replacement base-files ... Setting up base-files (5.0.0ubuntu24) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13456 files and directories currently installed.) Preparing to replace debianutils 3.2.3 (using .../debianutils_3.4.1_amd64.deb) ... Unpacking replacement debianutils ... Setting up debianutils (3.4.1) ... (Reading database ... 13456 files and directories currently installed.) Preparing to replace dpkg 1.15.8.4ubuntu3 (using .../dpkg_1.15.8.5ubuntu1_amd64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.15.8.5ubuntu1) ... (Reading database ... 13456 files and directories currently installed.) Preparing to replace perl-modules 5.10.1-12ubuntu2 (using .../perl-modules_5.10.1-15ubuntu2_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libc-dev-bin 2.12.1-0ubuntu6 (using .../libc-dev-bin_2.12.1-0ubuntu7_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace libc6-dev 2.12.1-0ubuntu6 (using .../libc6-dev_2.12.1-0ubuntu7_amd64.deb) ... Unpacking replacement libc6-dev ... Preparing to replace libc-bin 2.12.1-0ubuntu6 (using .../libc-bin_2.12.1-0ubuntu7_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.12.1-0ubuntu7) ... (Reading database ... 13456 files and directories currently installed.) Preparing to replace libc6 2.12.1-0ubuntu6 (using .../libc6_2.12.1-0ubuntu7_amd64.deb) ... Unpacking replacement libc6 ... Setting up libc6 (2.12.1-0ubuntu7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13456 files and directories currently installed.) Preparing to replace linux-libc-dev 2.6.35-1022.33 (using .../linux-libc-dev_2.6.36-0.4_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace libgomp1 4.5.1-7ubuntu2 (using .../libgomp1_4.5.1-9ubuntu1_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.5-base 4.5.1-7ubuntu2 (using .../gcc-4.5-base_4.5.1-9ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.5-base ... Setting up gcc-4.5-base (4.5.1-9ubuntu1) ... (Reading database ... 13463 files and directories currently installed.) Preparing to replace libgcc1 1:4.5.1-7ubuntu2 (using .../libgcc1_1%3a4.5.1-9ubuntu1_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.5.1-9ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13463 files and directories currently installed.) Preparing to replace libstdc++6 4.5.1-7ubuntu2 (using .../libstdc++6_4.5.1-9ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.5.1-9ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13463 files and directories currently installed.) Preparing to replace tzdata 2010l-1 (using .../tzdata_2010m-1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2010m-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Oct 18 06:53:42 UTC 2010. Universal Time is now: Mon Oct 18 06:53:42 UTC 2010. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 13463 files and directories currently installed.) Preparing to replace libdb4.8 4.8.30-1 (using .../libdb4.8_4.8.30-2_amd64.deb) ... Unpacking replacement libdb4.8 ... Setting up libdb4.8 (4.8.30-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13463 files and directories currently installed.) Preparing to replace perl 5.10.1-12ubuntu2 (using .../perl_5.10.1-15ubuntu2_amd64.deb) ... Unpacking replacement perl ... 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Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13463 files and directories currently installed.) Preparing to replace python2.6-minimal 2.6.6-5ubuntu1 (using .../python2.6-minimal_2.6.6-6ubuntu1_amd64.deb) ... Unpacking replacement python2.6-minimal ... Setting up python2.6-minimal (2.6.6-6ubuntu1) ... (Reading database ... 13463 files and directories currently installed.) Preparing to replace xz-utils 4.999.9beta+20100527-1 (using .../xz-utils_4.999.9beta+20100810-1_amd64.deb) ... Unpacking replacement xz-utils ... Setting up xz-utils (4.999.9beta+20100810-1) ... (Reading database ... 13463 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-15ubuntu2 (using .../libusb-0.1-4_2%3a0.1.12-16_amd64.deb) ... Unpacking replacement libusb-0.1-4 ... Preparing to replace gpgv 1.4.10-2ubuntu2 (using .../gpgv_1.4.10-4ubuntu1_amd64.deb) ... Unpacking replacement gpgv ... 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Preparing to replace libgcrypt11 1.4.5-2ubuntu1 (using .../libgcrypt11_1.4.5-2ubuntu2_amd64.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libk5crypto3 1.8.1+dfsg-5 (using .../libk5crypto3_1.8.1+dfsg-5ubuntu0.1_amd64.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.8.1+dfsg-5 (using .../libgssapi-krb5-2_1.8.1+dfsg-5ubuntu0.1_amd64.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.8.1+dfsg-5 (using .../libkrb5-3_1.8.1+dfsg-5ubuntu0.1_amd64.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.8.1+dfsg-5 (using .../libkrb5support0_1.8.1+dfsg-5ubuntu0.1_amd64.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace openssl 0.9.8o-1ubuntu4 (using .../openssl_0.9.8o-1ubuntu4.1_amd64.deb) ... Unpacking replacement openssl ... Preparing to replace ca-certificates 20090814 (using .../ca-certificates_20090814+nmu2_all.deb) ... Unpacking replacement ca-certificates ... Preparing to replace libcurl3-gnutls 7.21.0-1ubuntu1 (using .../libcurl3-gnutls_7.21.1-1ubuntu1_amd64.deb) ... Unpacking replacement libcurl3-gnutls ... Preparing to replace apt-transport-https 0.8.3ubuntu7 (using .../apt-transport-https_0.8.7ubuntu1_amd64.deb) ... Unpacking replacement apt-transport-https ... Selecting previously deselected package libgmpxx4ldbl. Unpacking libgmpxx4ldbl (from .../libgmpxx4ldbl_2%3a4.3.2+dfsg-1ubuntu1_amd64.deb) ... Selecting previously deselected package libppl7. Unpacking libppl7 (from .../libppl7_0.10.2-7ubuntu1_amd64.deb) ... Selecting previously deselected package libppl-c2. Unpacking libppl-c2 (from .../libppl-c2_0.10.2-7ubuntu1_amd64.deb) ... Selecting previously deselected package libcloog-ppl0. Unpacking libcloog-ppl0 (from .../libcloog-ppl0_0.15.9-2_amd64.deb) ... Selecting previously deselected package libelfg0. Unpacking libelfg0 (from .../libelfg0_0.8.13-1_amd64.deb) ... Selecting previously deselected package libmpc2. Unpacking libmpc2 (from .../libmpc2_0.8.2-1build1_amd64.deb) ... Selecting previously deselected package cpp-4.5. Unpacking cpp-4.5 (from .../cpp-4.5_4.5.1-9ubuntu1_amd64.deb) ... Preparing to replace cpp 4:4.4.4-1ubuntu2 (using .../cpp_4%3a4.5.1-1ubuntu2_amd64.deb) ... Unpacking replacement cpp ... Preparing to replace g++-4.4 4.4.4-14ubuntu5 (using .../g++-4.4_4.4.5-2ubuntu1_amd64.deb) ... Unpacking replacement g++-4.4 ... Preparing to replace libstdc++6-4.4-dev 4.4.4-14ubuntu5 (using .../libstdc++6-4.4-dev_4.4.5-2ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6-4.4-dev ... Preparing to replace gcc-4.4 4.4.4-14ubuntu5 (using .../gcc-4.4_4.4.5-2ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.4 ... Preparing to replace cpp-4.4 4.4.4-14ubuntu5 (using .../cpp-4.4_4.4.5-2ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.4 ... Preparing to replace gcc-4.4-base 4.4.4-14ubuntu5 (using .../gcc-4.4-base_4.4.5-2ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.4-base ... Preparing to replace binutils 2.20.51.20100908-0ubuntu2 (using .../binutils_2.20.51.20101014-0ubuntu1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace dpkg-dev 1.15.8.4ubuntu3 (using .../dpkg-dev_1.15.8.5ubuntu1_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.15.8.4ubuntu3 (using .../libdpkg-perl_1.15.8.5ubuntu1_all.deb) ... Unpacking replacement libdpkg-perl ... Selecting previously deselected package gcc-4.5. Unpacking gcc-4.5 (from .../gcc-4.5_4.5.1-9ubuntu1_amd64.deb) ... Preparing to replace gcc 4:4.4.4-1ubuntu2 (using .../gcc_4%3a4.5.1-1ubuntu2_amd64.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Selecting previously deselected package libstdc++6-4.5-dev. Unpacking libstdc++6-4.5-dev (from .../libstdc++6-4.5-dev_4.5.1-9ubuntu1_amd64.deb) ... Selecting previously deselected package g++-4.5. Unpacking g++-4.5 (from .../g++-4.5_4.5.1-9ubuntu1_amd64.deb) ... Preparing to replace g++ 4:4.4.4-1ubuntu2 (using .../g++_4%3a4.5.1-1ubuntu2_amd64.deb) ... Unpacking replacement g++ ... Preparing to replace libalgorithm-diff-perl 1.19.02-1 (using .../libalgorithm-diff-perl_1.19.02-2_all.deb) ... Unpacking replacement libalgorithm-diff-perl ... Preparing to replace libalgorithm-merge-perl 0.08-1 (using .../libalgorithm-merge-perl_0.08-2_all.deb) ... Unpacking replacement libalgorithm-merge-perl ... Preparing to replace pkgbinarymangler 75 (using .../pkgbinarymangler_77_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libc-dev-bin (2.12.1-0ubuntu7) ... Setting up linux-libc-dev (2.6.36-0.4) ... Setting up libc6-dev (2.12.1-0ubuntu7) ... Setting up libgomp1 (4.5.1-9ubuntu1) ... Setting up libusb-0.1-4 (2:0.1.12-16) ... Setting up gpgv (1.4.10-4ubuntu1) ... Setting up gnupg (1.4.10-4ubuntu1) ... Setting up adduser (3.112+nmu1ubuntu1) ... Setting up busybox-initramfs (1:1.17.1-4ubuntu1) ... Setting up libpcre3 (8.02-1.1) ... Setting up libglib2.0-0 (2.27.0-1ubuntu1) ... Setting up libudev0 (163-1) ... Setting up udev (163-1) ... Removing 'local diversion of /sbin/udevadm to /sbin/udevadm.upgrade' update-initramfs: deferring update (trigger activated) Setting up libgcrypt11 (1.4.5-2ubuntu2) ... Setting up libkrb5support0 (1.8.1+dfsg-5ubuntu0.1) ... Setting up libk5crypto3 (1.8.1+dfsg-5ubuntu0.1) ... Setting up libkrb5-3 (1.8.1+dfsg-5ubuntu0.1) ... Setting up libgssapi-krb5-2 (1.8.1+dfsg-5ubuntu0.1) ... Setting up openssl (0.9.8o-1ubuntu4.1) ... Setting up ca-certificates (20090814+nmu2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up libcurl3-gnutls (7.21.1-1ubuntu1) ... Setting up apt-transport-https (0.8.7ubuntu1) ... Setting up libgmpxx4ldbl (2:4.3.2+dfsg-1ubuntu1) ... Setting up libppl7 (0.10.2-7ubuntu1) ... Setting up libppl-c2 (0.10.2-7ubuntu1) ... Setting up libcloog-ppl0 (0.15.9-2) ... Setting up libelfg0 (0.8.13-1) ... Setting up libmpc2 (0.8.2-1build1) ... Setting up cpp-4.5 (4.5.1-9ubuntu1) ... Setting up cpp (4:4.5.1-1ubuntu2) ... Setting up gcc-4.4-base (4.4.5-2ubuntu1) ... Setting up cpp-4.4 (4.4.5-2ubuntu1) ... Setting up binutils (2.20.51.20101014-0ubuntu1) ... Setting up gcc-4.4 (4.4.5-2ubuntu1) ... Setting up gcc-4.5 (4.5.1-9ubuntu1) ... Setting up gcc (4:4.5.1-1ubuntu2) ... Setting up pkgbinarymangler (77) ... Installing new version of config file /etc/pkgbinarymangler/striptranslations.blacklist ... Setting up perl-modules (5.10.1-15ubuntu2) ... Setting up g++-4.4 (4.4.5-2ubuntu1) ... Setting up libstdc++6-4.5-dev (4.5.1-9ubuntu1) ... Setting up perl (5.10.1-15ubuntu2) ... Setting up libstdc++6-4.4-dev (4.4.5-2ubuntu1) ... Setting up libdpkg-perl (1.15.8.5ubuntu1) ... Setting up dpkg-dev (1.15.8.5ubuntu1) ... Setting up g++-4.5 (4.5.1-9ubuntu1) ... Setting up g++ (4:4.5.1-1ubuntu2) ... Setting up libalgorithm-diff-perl (1.19.02-2) ... Setting up libalgorithm-merge-perl (0.08-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'eeb19dc97a78cc4feb4691d28929d54c63bac167', 'amd64', 'natty', '--nolog', '--batch', '--archive=ubuntu', '--dist=natty', '--purpose=PRIMARY', '--architecture=amd64', '--comp=multiverse', 'embassy-phylip_3.69+20100721-2.dsc'] Initiating build eeb19dc97a78cc4feb4691d28929d54c63bac167 with 8 processor cores. Automatic build of embassy-phylip_3.69+20100721-2 on allspice by sbuild/amd64 1.170.5 Build started at 20101018-0754 ****************************************************************************** embassy-phylip_3.69+20100721-2.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 7), autotools-dev, libxaw7-dev, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~), libgd2-xpm-dev, libmysqlclient-dev, libpq-dev sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... cdbs: missing debhelper: missing autotools-dev: missing libxaw7-dev: missing emboss-lib: missing emboss-lib: missing libgd2-xpm-dev: missing libmysqlclient-dev: missing libpq-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper autotools-dev libxaw7-dev emboss-lib emboss-lib libgd2-xpm-dev libmysqlclient-dev libpq-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake bsdmainutils comerr-dev fdupes file fontconfig-config gettext gettext-base groff-base html2text intltool intltool-debian krb5-multidev libcroco3 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd2-xpm libgssrpc4 libhpdf-2.1.0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice-dev libice6 libjpeg62 libjpeg62-dev libkadm5clnt-mit7 libkadm5srv-mit7 libkdb5-4 libkrb5-dev libmagic1 libmysqlclient16 libpng12-dev libpopt0 libpq5 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libssl-dev libunistring0 liburi-perl libwww-perl libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxaw7 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml-parser-perl libxml2 libxmu-dev libxmu-headers libxmu6 libxpm-dev libxpm4 libxt-dev libxt6 m4 man-db mysql-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev xtrans-dev zlib1g-dev Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts doc-base dh-make gettext-doc groff krb5-doc libgd-tools krb5-user libdata-dump-perl postgresql-doc-8.4 libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser libmail-box-perl Recommended packages: curl wget lynx libmailtools-perl libhtml-format-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils cdbs comerr-dev debhelper emboss-lib fdupes file fontconfig-config gettext gettext-base groff-base html2text intltool intltool-debian krb5-multidev libcroco3 libexpat1 libexpat1-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgd2-xpm libgd2-xpm-dev libgssrpc4 libhpdf-2.1.0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libice-dev libice6 libjpeg62 libjpeg62-dev libkadm5clnt-mit7 libkadm5srv-mit7 libkdb5-4 libkrb5-dev libmagic1 libmysqlclient-dev libmysqlclient16 libpng12-dev libpopt0 libpq-dev libpq5 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libssl-dev libunistring0 liburi-perl libwww-perl libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxaw7 libxaw7-dev libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxml-parser-perl libxml2 libxmu-dev libxmu-headers libxmu6 libxpm-dev libxpm4 libxt-dev libxt6 m4 man-db mysql-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-xext-dev xtrans-dev zlib1g-dev 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. Need to get 35.6 MB of archives. After this operation, 105 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! x11-common libice6 x11proto-core-dev libice-dev libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev libxext6 libsm6 libxt6 libxmu6 libxpm4 libxaw7 x11proto-xext-dev libxext-dev libsm-dev libxt-dev libxmu-headers libxmu-dev libxpm-dev libxaw7-dev libmagic1 file libexpat1 libpopt0 ucf bsdmainutils ttf-dejavu-core fontconfig-config gettext-base groff-base libfreetype6 libfontconfig1 libgssrpc4 liburi-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libkadm5clnt-mit7 libkdb5-4 libkadm5srv-mit7 libwww-perl libxml-parser-perl libxml2 man-db m4 autoconf autotools-dev automake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper fdupes intltool cdbs libjpeg62 libgd2-xpm libhpdf-2.1.0 mysql-common libmysqlclient16 libpq5 emboss-lib comerr-dev krb5-multidev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libjpeg62-dev libpng12-dev libgd2-xpm-dev libmysqlclient-dev libssl-dev libkrb5-dev libpq-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ natty/main x11-common all 1:7.5+6ubuntu3 [309 kB] Get:2 http://ftpmaster.internal/ubuntu/ natty/main libice6 amd64 2:1.0.6-1 [54.3 kB] Get:3 http://ftpmaster.internal/ubuntu/ natty/main x11proto-core-dev all 7.0.17-1 [95.2 kB] Get:4 http://ftpmaster.internal/ubuntu/ natty/main libice-dev amd64 2:1.0.6-1 [67.1 kB] Get:5 http://ftpmaster.internal/ubuntu/ natty/main libxau6 amd64 1:1.0.6-1 [16.8 kB] Get:6 http://ftpmaster.internal/ubuntu/ natty/main libxdmcp6 amd64 1:1.0.3-2 [19.2 kB] Get:7 http://ftpmaster.internal/ubuntu/ natty/main libxcb1 amd64 1.6-1 [43.8 kB] Get:8 http://ftpmaster.internal/ubuntu/ natty/main libx11-data all 2:1.3.3-3ubuntu1 [215 kB] Get:9 http://ftpmaster.internal/ubuntu/ natty/main libx11-6 amd64 2:1.3.3-3ubuntu1 [842 kB] Get:10 http://ftpmaster.internal/ubuntu/ natty/main libxau-dev amd64 1:1.0.6-1 [20.4 kB] Get:11 http://ftpmaster.internal/ubuntu/ natty/main libxdmcp-dev amd64 1:1.0.3-2 [22.8 kB] Get:12 http://ftpmaster.internal/ubuntu/ natty/main x11proto-input-dev all 2.0-2 [62.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ natty/main x11proto-kb-dev all 1.0.4-1 [27.3 kB] Get:14 http://ftpmaster.internal/ubuntu/ natty/main xtrans-dev all 1.2.5-1 [68.5 kB] Get:15 http://ftpmaster.internal/ubuntu/ natty/main libpthread-stubs0 amd64 0.3-2 [3202 B] Get:16 http://ftpmaster.internal/ubuntu/ natty/main libpthread-stubs0-dev amd64 0.3-2 [2412 B] Get:17 http://ftpmaster.internal/ubuntu/ natty/main libxcb1-dev amd64 1.6-1 [81.1 kB] Get:18 http://ftpmaster.internal/ubuntu/ natty/main libx11-dev amd64 2:1.3.3-3ubuntu1 [3506 kB] Get:19 http://ftpmaster.internal/ubuntu/ natty/main libxext6 amd64 2:1.1.2-1 [45.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ natty/main libsm6 amd64 2:1.1.1-1 [25.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ natty/main libxt6 amd64 1:1.0.7-1 [195 kB] Get:22 http://ftpmaster.internal/ubuntu/ natty/main libxmu6 amd64 2:1.0.5-2 [57.7 kB] Get:23 http://ftpmaster.internal/ubuntu/ natty/main libxpm4 amd64 1:3.5.8-1 [44.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ natty/main libxaw7 amd64 2:1.0.7-1 [212 kB] Get:25 http://ftpmaster.internal/ubuntu/ natty/main x11proto-xext-dev all 7.1.1-2 [27.2 kB] Get:26 http://ftpmaster.internal/ubuntu/ natty/main libxext-dev amd64 2:1.1.2-1 [108 kB] Get:27 http://ftpmaster.internal/ubuntu/ natty/main libsm-dev amd64 2:1.1.1-1 [28.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ natty/main libxt-dev amd64 1:1.0.7-1 [525 kB] Get:29 http://ftpmaster.internal/ubuntu/ natty/main libxmu-headers all 2:1.0.5-2 [22.9 kB] Get:30 http://ftpmaster.internal/ubuntu/ natty/main libxmu-dev amd64 2:1.0.5-2 [67.9 kB] Get:31 http://ftpmaster.internal/ubuntu/ natty/main libxpm-dev amd64 1:3.5.8-1 [102 kB] Get:32 http://ftpmaster.internal/ubuntu/ natty/main libxaw7-dev amd64 2:1.0.7-1 [610 kB] Get:33 http://ftpmaster.internal/ubuntu/ natty/main libmagic1 amd64 5.03-5ubuntu1 [392 kB] Get:34 http://ftpmaster.internal/ubuntu/ natty/main file amd64 5.03-5ubuntu1 [48.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ natty/main libexpat1 amd64 2.0.1-7ubuntu1 [138 kB] Get:36 http://ftpmaster.internal/ubuntu/ natty/main libpopt0 amd64 1.16-1 [35.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ natty/main ucf all 3.0025+nmu1 [69.1 kB] Get:38 http://ftpmaster.internal/ubuntu/ natty/main bsdmainutils amd64 8.0.11ubuntu1 [205 kB] Get:39 http://ftpmaster.internal/ubuntu/ natty/main ttf-dejavu-core all 2.31-1 [1450 kB] Get:40 http://ftpmaster.internal/ubuntu/ natty/main fontconfig-config all 2.8.0-2ubuntu1 [205 kB] Get:41 http://ftpmaster.internal/ubuntu/ natty/main gettext-base amd64 0.18.1.1-1ubuntu2 [99.2 kB] Get:42 http://ftpmaster.internal/ubuntu/ natty/main groff-base amd64 1.20.1-10 [1130 kB] Get:43 http://ftpmaster.internal/ubuntu/ natty/main libfreetype6 amd64 2.4.2-2 [374 kB] Get:44 http://ftpmaster.internal/ubuntu/ natty/main libfontconfig1 amd64 2.8.0-2ubuntu1 [285 kB] Get:45 http://ftpmaster.internal/ubuntu/ natty/main libgssrpc4 amd64 1.8.1+dfsg-5ubuntu0.1 [81.3 kB] Get:46 http://ftpmaster.internal/ubuntu/ natty/main liburi-perl all 1.55-1 [90.6 kB] Get:47 http://ftpmaster.internal/ubuntu/ natty/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:48 http://ftpmaster.internal/ubuntu/ natty/main libhtml-parser-perl amd64 3.68-1 [102 kB] Get:49 http://ftpmaster.internal/ubuntu/ natty/main libhtml-tree-perl all 4.0-1 [205 kB] Get:50 http://ftpmaster.internal/ubuntu/ natty/main libkadm5clnt-mit7 amd64 1.8.1+dfsg-5ubuntu0.1 [61.9 kB] Get:51 http://ftpmaster.internal/ubuntu/ natty/main libkdb5-4 amd64 1.8.1+dfsg-5ubuntu0.1 [61.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ natty/main libkadm5srv-mit7 amd64 1.8.1+dfsg-5ubuntu0.1 [75.6 kB] Get:53 http://ftpmaster.internal/ubuntu/ natty/main libwww-perl all 5.837-1 [363 kB] Get:54 http://ftpmaster.internal/ubuntu/ natty/main libxml-parser-perl amd64 2.36-1.1build3 [324 kB] Get:55 http://ftpmaster.internal/ubuntu/ natty/main libxml2 amd64 2.7.7.dfsg-4 [874 kB] Get:56 http://ftpmaster.internal/ubuntu/ natty/main man-db amd64 2.5.7-6 [1327 kB] Get:57 http://ftpmaster.internal/ubuntu/ natty/main m4 amd64 1.4.14-3 [290 kB] Get:58 http://ftpmaster.internal/ubuntu/ natty/main autoconf all 2.67-2ubuntu1 [569 kB] Get:59 http://ftpmaster.internal/ubuntu/ natty/main autotools-dev all 20100122.1 [70.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ natty/main automake all 1:1.11.1-1 [608 kB] Get:61 http://ftpmaster.internal/ubuntu/ natty/main html2text amd64 1.3.2a-15 [104 kB] Get:62 http://ftpmaster.internal/ubuntu/ natty/main libcroco3 amd64 0.6.2-1 [101 kB] Get:63 http://ftpmaster.internal/ubuntu/ natty/main libunistring0 amd64 0.9.3-3 [425 kB] Get:64 http://ftpmaster.internal/ubuntu/ natty/main gettext amd64 0.18.1.1-1ubuntu2 [1317 kB] Get:65 http://ftpmaster.internal/ubuntu/ natty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:66 http://ftpmaster.internal/ubuntu/ natty/main po-debconf all 1.0.16 [224 kB] Get:67 http://ftpmaster.internal/ubuntu/ natty/main debhelper all 8.0.0ubuntu1 [460 kB] Get:68 http://ftpmaster.internal/ubuntu/ natty/main fdupes amd64 1.50-PR2-3 [21.3 kB] Get:69 http://ftpmaster.internal/ubuntu/ natty/main intltool all 0.41.1-1 [103 kB] Get:70 http://ftpmaster.internal/ubuntu/ natty/main cdbs all 0.4.89ubuntu1 [1218 kB] Get:71 http://ftpmaster.internal/ubuntu/ natty/main libjpeg62 amd64 6b1-1 [94.7 kB] Get:72 http://ftpmaster.internal/ubuntu/ natty/main libgd2-xpm amd64 2.0.36~rc1~dfsg-3.2ubuntu1 [215 kB] Get:73 http://ftpmaster.internal/ubuntu/ natty/universe libhpdf-2.1.0 amd64 2.1.0+dfsg-1 [494 kB] Get:74 http://ftpmaster.internal/ubuntu/ natty/main mysql-common all 5.1.49-1ubuntu8 [63.6 kB] Get:75 http://ftpmaster.internal/ubuntu/ natty/main libmysqlclient16 amd64 5.1.49-1ubuntu8 [1934 kB] Get:76 http://ftpmaster.internal/ubuntu/ natty/main libpq5 amd64 8.4.5-1 [88.9 kB] Get:77 http://ftpmaster.internal/ubuntu/ natty/universe emboss-lib amd64 6.3.1-6 [3338 kB] Get:78 http://ftpmaster.internal/ubuntu/ natty/main comerr-dev amd64 2.1-1.41.12-1ubuntu2 [42.3 kB] Get:79 http://ftpmaster.internal/ubuntu/ natty/main krb5-multidev amd64 1.8.1+dfsg-5ubuntu0.1 [103 kB] Get:80 http://ftpmaster.internal/ubuntu/ natty/main libexpat1-dev amd64 2.0.1-7ubuntu1 [220 kB] Get:81 http://ftpmaster.internal/ubuntu/ natty/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu1 [194 kB] Get:82 http://ftpmaster.internal/ubuntu/ natty/main libfreetype6-dev amd64 2.4.2-2 [747 kB] Get:83 http://ftpmaster.internal/ubuntu/ natty/main pkg-config amd64 0.25-1.1 [43.7 kB] Get:84 http://ftpmaster.internal/ubuntu/ natty/main libfontconfig1-dev amd64 2.8.0-2ubuntu1 [657 kB] Get:85 http://ftpmaster.internal/ubuntu/ natty/main libjpeg62-dev amd64 6b1-1 [202 kB] Get:86 http://ftpmaster.internal/ubuntu/ natty/main libpng12-dev amd64 1.2.44-1 [273 kB] Get:87 http://ftpmaster.internal/ubuntu/ natty/main libgd2-xpm-dev amd64 2.0.36~rc1~dfsg-3.2ubuntu1 [223 kB] Get:88 http://ftpmaster.internal/ubuntu/ natty/main libmysqlclient-dev amd64 5.1.49-1ubuntu8 [3220 kB] Get:89 http://ftpmaster.internal/ubuntu/ natty/main libssl-dev amd64 0.9.8o-1ubuntu4.1 [2160 kB] Get:90 http://ftpmaster.internal/ubuntu/ natty/main libkrb5-dev amd64 1.8.1+dfsg-5ubuntu0.1 [36.0 kB] Get:91 http://ftpmaster.internal/ubuntu/ natty/main libpq-dev amd64 8.4.5-1 [202 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.6 MB in 1s (28.5 MB/s) Selecting previously deselected package x11-common. (Reading database ... 14352 files and directories currently installed.) Unpacking x11-common (from .../x11-common_1%3a7.5+6ubuntu3_all.deb) ... Selecting previously deselected package libice6. Unpacking libice6 (from .../libice6_2%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.17-1_all.deb) ... Setting up x11-common (1:7.5+6ubuntu3) ... Selecting previously deselected package libice-dev. (Reading database ... 14473 files and directories currently installed.) Unpacking libice-dev (from .../libice-dev_2%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1_amd64.deb) ... Selecting previously deselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.0.3-2_amd64.deb) ... Selecting previously deselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.6-1_amd64.deb) ... 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Setting up libxau6 (1:1.0.6-1) ... Setting up libxdmcp6 (1:1.0.3-2) ... Setting up libxcb1 (1.6-1) ... Setting up libx11-data (2:1.3.3-3ubuntu1) ... Setting up libx11-6 (2:1.3.3-3ubuntu1) ... Setting up libxau-dev (1:1.0.6-1) ... Setting up libxdmcp-dev (1:1.0.3-2) ... Setting up x11proto-input-dev (2.0-2) ... Setting up x11proto-kb-dev (1.0.4-1) ... Setting up xtrans-dev (1.2.5-1) ... Setting up libpthread-stubs0 (0.3-2) ... Setting up libpthread-stubs0-dev (0.3-2) ... Setting up libxcb1-dev (1.6-1) ... Setting up libx11-dev (2:1.3.3-3ubuntu1) ... Setting up libxext6 (2:1.1.2-1) ... Setting up libsm6 (2:1.1.1-1) ... Setting up libxt6 (1:1.0.7-1) ... Setting up libxmu6 (2:1.0.5-2) ... Setting up libxpm4 (1:3.5.8-1) ... Setting up libxaw7 (2:1.0.7-1) ... Setting up x11proto-xext-dev (7.1.1-2) ... Setting up libxext-dev (2:1.1.2-1) ... Setting up libsm-dev (2:1.1.1-1) ... Setting up libxt-dev (1:1.0.7-1) ... Setting up libxmu-headers (2:1.0.5-2) ... Setting up libxmu-dev (2:1.0.5-2) ... Setting up libxpm-dev (1:3.5.8-1) ... Setting up libxaw7-dev (2:1.0.7-1) ... Setting up libmagic1 (5.03-5ubuntu1) ... Setting up file (5.03-5ubuntu1) ... Setting up libexpat1 (2.0.1-7ubuntu1) ... Setting up libpopt0 (1.16-1) ... Setting up ucf (3.0025+nmu1) ... Setting up bsdmainutils (8.0.11ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up ttf-dejavu-core (2.31-1) ... Setting up fontconfig-config (2.8.0-2ubuntu1) ... Setting up gettext-base (0.18.1.1-1ubuntu2) ... Setting up groff-base (1.20.1-10) ... Setting up libfreetype6 (2.4.2-2) ... Setting up libfontconfig1 (2.8.0-2ubuntu1) ... Setting up libgssrpc4 (1.8.1+dfsg-5ubuntu0.1) ... Setting up liburi-perl (1.55-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.68-1) ... Setting up libhtml-tree-perl (4.0-1) ... Setting up libkadm5clnt-mit7 (1.8.1+dfsg-5ubuntu0.1) ... Setting up libkdb5-4 (1.8.1+dfsg-5ubuntu0.1) ... Setting up libkadm5srv-mit7 (1.8.1+dfsg-5ubuntu0.1) ... Setting up libwww-perl (5.837-1) ... Setting up libxml-parser-perl (2.36-1.1build3) ... Setting up libxml2 (2.7.7.dfsg-4) ... Setting up man-db (2.5.7-6) ... Building database of manual pages ... Setting up m4 (1.4.14-3) ... Setting up autoconf (2.67-2ubuntu1) ... Setting up autotools-dev (20100122.1) ... Setting up automake (1:1.11.1-1) ... update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode. Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-3) ... Setting up gettext (0.18.1.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16) ... Setting up debhelper (8.0.0ubuntu1) ... Setting up fdupes (1.50-PR2-3) ... Setting up intltool (0.41.1-1) ... Setting up cdbs (0.4.89ubuntu1) ... Setting up libjpeg62 (6b1-1) ... Setting up libgd2-xpm (2.0.36~rc1~dfsg-3.2ubuntu1) ... Setting up libhpdf-2.1.0 (2.1.0+dfsg-1) ... Setting up mysql-common (5.1.49-1ubuntu8) ... Setting up libmysqlclient16 (5.1.49-1ubuntu8) ... Setting up libpq5 (8.4.5-1) ... Setting up emboss-lib (6.3.1-6) ... Setting up comerr-dev (2.1-1.41.12-1ubuntu2) ... Setting up krb5-multidev (1.8.1+dfsg-5ubuntu0.1) ... Setting up libexpat1-dev (2.0.1-7ubuntu1) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu1) ... Setting up libfreetype6-dev (2.4.2-2) ... Setting up pkg-config (0.25-1.1) ... Setting up libfontconfig1-dev (2.8.0-2ubuntu1) ... Setting up libjpeg62-dev (6b1-1) ... Setting up libpng12-dev (1.2.44-1) ... Setting up libgd2-xpm-dev (2.0.36~rc1~dfsg-3.2ubuntu1) ... Setting up libmysqlclient-dev (5.1.49-1ubuntu8) ... Setting up libssl-dev (0.9.8o-1ubuntu4.1) ... Setting up libkrb5-dev (1.8.1+dfsg-5ubuntu0.1) ... Setting up libpq-dev (8.4.5-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.12.1-0ubuntu7 make_3.81-8 dpkg-dev_1.15.8.5ubuntu1 gcc-4.5_4.5.1-9ubuntu1 g++-4.5_4.5.1-9ubuntu1 binutils_2.20.51.20101014-0ubuntu1 libstdc++6-4.5-dev_4.5.1-9ubuntu1 libstdc++6_4.5.1-9ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Thu Sep 23 05:14:14 2010 UTC using DSA key ID BAFEC7F2 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./embassy-phylip_3.69+20100721-2.dsc dpkg-source: info: extracting embassy-phylip in embassy-phylip-3.69+20100721 dpkg-source: info: unpacking embassy-phylip_3.69+20100721.orig.tar.gz dpkg-source: info: applying embassy-phylip_3.69+20100721-2.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package embassy-phylip dpkg-buildpackage: source version 3.69+20100721-2 dpkg-source --before-build embassy-phylip-3.69+20100721 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . -k distclean make[1]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721' make[1]: *** No rule to make target `distclean'. make[1]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721' make: [makefile-clean] Error 2 (ignored) rm -f debian/stamp-autotools rmdir --ignore-fail-on-non-empty . rmdir: failed to remove `.': Invalid argument make: [makefile-clean] Error 1 (ignored) for i in ./config.guess ./config.sub ; do \ if test -e $i.cdbs-orig ; then \ mv $i.cdbs-orig $i ; \ fi ; \ done dh_clean rm -f debian/stamp-autotools-files debian/rules build test -x debian/rules mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi touch debian/stamp-autotools-files chmod a+x /build/buildd/embassy-phylip-3.69+20100721/./configure mkdir -p . cd . && CFLAGS="-g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" /build/buildd/embassy-phylip-3.69+20100721/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/embassy-phylip" --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --srcdir=. --enable-systemlibs configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) mawk checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking for inline... inline checking whether byte ordering is bigendian... no checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... yes checking for strftime... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... yes checking for _doprnt... no checking for strdup... yes checking for strstr... yes checking for strchr... yes checking for erand48... yes checking for memmove... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking X11/Xaw/Label.h usability... yes checking X11/Xaw/Label.h presence... yes checking for X11/Xaw/Label.h... yes checking for XawInitializeWidgetSet in -lXaw... yes checking for XtToolkitInitialize in -lXt... yes checking for socket in -lc... yes checking for main in -lm... yes checking if docroot is given... no checking if gcc profiling is selected... no checking if java include directory given... no checking if java OS include directory given... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking if any authorisation type is given... no checking if Linux x86_64... yes checking for mysql_config... /usr/bin/mysql_config checking for MySQL libraries... yes checking for pg_config... /usr/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... done checking for purify... no checking for cygwin... no checking if any threading type is given... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating emboss_acd/Makefile config.status: creating data/Makefile config.status: creating emboss_doc/Makefile config.status: creating emboss_doc/html/Makefile config.status: creating emboss_doc/text/Makefile config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules touch debian/stamp-autotools /usr/bin/make -C . make[1]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721' Making all in src make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/src' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c clique.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c disc.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c phylip.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fclique clique.o disc.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fclique clique.o disc.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c consense.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c cons.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fconsense consense.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fconsense consense.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c contml.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c cont.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fcontml contml.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fcontml contml.o cont.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c contrast.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fcontrast contrast.o cont.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fcontrast contrast.o cont.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnacomp.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c seq.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnacomp dnacomp.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnadist.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnadist dnadist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnainvar.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnainvar dnainvar.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnaml.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnaml dnaml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnamlk.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c printree.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c mlclock.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnamlk dnamlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnamove.c gcc: unrecognized option '-R/usr/lib/emboss/lib' dnamove.c: In function 'redisplay': dnamove.c:2101:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result dnamove.c:2202:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result dnamove.c: In function 'rearrange': dnamove.c:1650:16: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result dnamove.c: In function 'yourtree': dnamove.c:1380:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c moves.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnamove dnamove.o moves.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnapars.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnapars dnapars.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dnapenny.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdnapenny dnapenny.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dolmove.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dollo.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdolmove dolmove.o disc.o moves.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dollop.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdollop dollop.o disc.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dolpenny.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdolpenny dolpenny.o disc.o dollo.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c drawgram.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c draw.c gcc: unrecognized option '-R/usr/lib/emboss/lib' draw.c: In function 'plotpreview': draw.c:3323:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c: In function 'makebox': draw.c:3153:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c: In function 'getvrmlparms': draw.c:1640:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1658:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1685:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1712:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1739:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1766:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c: In function 'getrayparms': draw.c:1443:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1461:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1488:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1515:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1544:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1571:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c:1578:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c: In function 'finishplotter': draw.c:807:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result draw.c: In function 'getpreview': draw.c:381:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c draw2.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdrawgram drawgram.o draw.o draw2.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c drawtree.c gcc: unrecognized option '-R/usr/lib/emboss/lib' drawtree.c: In function 'getparms': drawtree.c:741:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result drawtree.c:775:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result drawtree.c:791:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result drawtree.c:809:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result drawtree.c:838:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result drawtree.c:862:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result drawtree.c:875:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result drawtree.c:889:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdrawtree drawtree.o draw.o draw2.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c factor.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ffactor factor.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o ffactor factor.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c fitch.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c dist.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ffitch fitch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o ffitch fitch.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c gendist.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fgendist gendist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fgendist gendist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c kitsch.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fkitsch kitsch.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c mix.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c wagner.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fmix mix.o disc.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c move.c gcc: unrecognized option '-R/usr/lib/emboss/lib' move.c: In function 'redisplay': move.c:1354:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result move.c:1460:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fmove move.o disc.o moves.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c neighbor.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fneighbor neighbor.o dist.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c pars.c gcc: unrecognized option '-R/usr/lib/emboss/lib' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c discrete.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fpars pars.o discrete.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fpars pars.o discrete.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c penny.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fpenny penny.o disc.o wagner.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c proml.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fproml proml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fproml proml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c promlk.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fpromlk promlk.o seq.o phylip.o printree.o mlclock.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c protdist.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fprotdist protdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fprotdist protdist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c protpars.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fprotpars protpars.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fprotpars protpars.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c restdist.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o frestdist restdist.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o frestdist restdist.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c restml.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o frestml restml.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o frestml restml.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c retree.c gcc: unrecognized option '-R/usr/lib/emboss/lib' retree.c: In function 'redisplay': retree.c:3028:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result retree.c:3149:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result retree.c: In function 'changelength': retree.c:2880:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result retree.c: In function 'treewrite': retree.c:2704:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result retree.c: In function 'del_or_restore': retree.c:2011:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result retree.c: In function 'rearrange': retree.c:1496:16: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result retree.c: In function 'yourtree': retree.c:1205:14: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fretree retree.o moves.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fretree retree.o moves.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c discboot.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fdiscboot discboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c freqboot.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o ffreqboot freqboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c restboot.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o frestboot restboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o frestboot restboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c seqboot.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fseqboot seqboot.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c seqbootall.c gcc: unrecognized option '-R/usr/lib/emboss/lib' /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o fseqbootall seqbootall.o seq.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c treedist.c gcc: unrecognized option '-R/usr/lib/emboss/lib' treedist.c: In function 'pairing_submenu': treedist.c:884:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result treedist.c: In function 'output_submenu': treedist.c:835:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ftreedist treedist.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o ftreedist treedist.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"PHYLIPNEW\" -DVERSION=\"3.69\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_STRDUP=1 -DHAVE_STRSTR=1 -DHAVE_STRCHR=1 -DHAVE_ERAND48=1 -DHAVE_MEMMOVE=1 -DPLD_xwin=1 -DHAVE_LIBM=1 -DPLD_png=1 -DHAVE_MYSQL=1 -DHAVE_POSTGRESQL=1 -I. -I../include -I/usr/include -I/usr/include/eplplot -I/usr/include/epcre -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DLENDIAN -DNO_AUTH -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -c treedistpair.c gcc: unrecognized option '-R/usr/lib/emboss/lib' treedistpair.c: In function 'pairing_submenu': treedistpair.c:886:10: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result treedistpair.c: In function 'output_submenu': treedistpair.c:837:12: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -L/usr/lib/mysql -lmysqlclient -L/usr/lib -lpq -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lX11 -lXaw -lXt -lm -lgd -lpng -lz -lm libtool: link: gcc -g -O2 -g -Wall -O2 -I/usr/lib/emboss/include -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot -O2 -D__amd64__ -I/usr/include/mysql -I/usr/include/postgresql -Wl,-Bsymbolic-functions -Wl,--as-needed -Wl,-Bsymbolic-functions -rdynamic -o ftreedistpair treedistpair.o cons.o phylip.o -L/usr/lib/emboss/lib -L/usr/lib/mysql /usr/lib/libmysqlclient.so -lpthread -lcrypt -lnsl -L/usr/lib -lpq -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre -leplplot -lXaw -lXt /usr/lib/libgd.so -lXpm -lX11 /usr/lib/libjpeg.so -lfontconfig /usr/lib/libfreetype.so -lpng12 -lpng -lz -lm -Wl,-rpath -Wl,/usr/lib/emboss/lib make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/src' Making all in emboss_acd make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_acd' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_acd' Making all in data make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/data' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/data' Making all in emboss_doc make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' Making all in html make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/html' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/html' Making all in text make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/text' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721' make[1]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." if test -e /usr/share/misc/config.guess ; then \ for i in ./config.guess ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.guess $i ; \ fi ; \ done ; \ fi if test -e /usr/share/misc/config.sub ; then \ for i in ./config.sub ; do \ if ! test -e $i.cdbs-orig ; then \ mv $i $i.cdbs-orig ; \ cp --remove-destination /usr/share/misc/config.sub $i ; \ fi ; \ done ; \ fi DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/make -C . install DESTDIR=/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip/ make[1]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721' Making install in src make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/src' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/src' test -z "/usr/bin" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c fclique fconsense fcontml fcontrast fdnacomp fdnadist fdnainvar fdnaml fdnamlk fdnamove fdnapars fdnapenny fdolmove fdollop fdolpenny fdrawgram fdrawtree ffactor ffitch fgendist fkitsch fmix fmove fneighbor fpars fpenny fproml fpromlk fprotdist fprotpars frestdist frestml fretree fdiscboot ffreqboot frestboot fseqboot fseqbootall ftreedist ftreedistpair '/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin' libtool: install: /usr/bin/install -c fclique /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fclique libtool: install: /usr/bin/install -c fconsense /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fconsense libtool: install: /usr/bin/install -c fcontml /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fcontml libtool: install: /usr/bin/install -c fcontrast /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fcontrast libtool: install: /usr/bin/install -c fdnacomp /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnacomp libtool: install: /usr/bin/install -c fdnadist /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnadist libtool: install: /usr/bin/install -c fdnainvar /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnainvar libtool: install: /usr/bin/install -c fdnaml /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnaml libtool: install: /usr/bin/install -c fdnamlk /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnamlk libtool: install: /usr/bin/install -c fdnamove /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnamove libtool: install: /usr/bin/install -c fdnapars /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnapars libtool: install: /usr/bin/install -c fdnapenny /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdnapenny libtool: install: /usr/bin/install -c fdolmove /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdolmove libtool: install: /usr/bin/install -c fdollop /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdollop libtool: install: /usr/bin/install -c fdolpenny /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdolpenny libtool: install: /usr/bin/install -c fdrawgram /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdrawgram libtool: install: /usr/bin/install -c fdrawtree /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdrawtree libtool: install: /usr/bin/install -c ffactor /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ffactor libtool: install: /usr/bin/install -c ffitch /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ffitch libtool: install: /usr/bin/install -c fgendist /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fgendist libtool: install: /usr/bin/install -c fkitsch /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fkitsch libtool: install: /usr/bin/install -c fmix /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fmix libtool: install: /usr/bin/install -c fmove /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fmove libtool: install: /usr/bin/install -c fneighbor /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fneighbor libtool: install: /usr/bin/install -c fpars /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fpars libtool: install: /usr/bin/install -c fpenny /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fpenny libtool: install: /usr/bin/install -c fproml /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fproml libtool: install: /usr/bin/install -c fpromlk /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fpromlk libtool: install: /usr/bin/install -c fprotdist /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fprotdist libtool: install: /usr/bin/install -c fprotpars /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fprotpars libtool: install: /usr/bin/install -c frestdist /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/frestdist libtool: install: /usr/bin/install -c frestml /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/frestml libtool: install: /usr/bin/install -c fretree /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fretree libtool: install: /usr/bin/install -c fdiscboot /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fdiscboot libtool: install: /usr/bin/install -c ffreqboot /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ffreqboot libtool: install: /usr/bin/install -c frestboot /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/frestboot libtool: install: /usr/bin/install -c fseqboot /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fseqboot libtool: install: /usr/bin/install -c fseqbootall /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/fseqbootall libtool: install: /usr/bin/install -c ftreedist /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ftreedist libtool: install: /usr/bin/install -c ftreedistpair /build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/bin/ftreedistpair make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/src' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/src' Making install in emboss_acd make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_acd' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_acd' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/acd" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/acd" /usr/bin/install -c -m 644 fclique.acd fconsense.acd fcontml.acd fcontrast.acd fdiscboot.acd fdnacomp.acd fdnadist.acd fdnainvar.acd fdnaml.acd fdnamlk.acd fdnamove.acd fdnapars.acd fdnapenny.acd fdollop.acd fdolmove.acd fdolpenny.acd fdrawgram.acd fdrawtree.acd ffactor.acd ffitch.acd ffreqboot.acd fgendist.acd fkitsch.acd fmix.acd fmove.acd fneighbor.acd fpars.acd fpenny.acd fproml.acd fpromlk.acd fprotdist.acd fprotpars.acd frestboot.acd frestdist.acd frestml.acd fretree.acd fseqboot.acd fseqbootall.acd ftreedist.acd ftreedistpair.acd '/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/acd' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_acd' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_acd' Making install in data make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/data' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/data' make[3]: Nothing to be done for `install-exec-am'. test -z "/usr/share/PHYLIPNEW/data/" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/PHYLIPNEW/data/" /usr/bin/install -c -m 644 font1 font2 font3 font4 font5 font6 '/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/PHYLIPNEW/data/' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/data' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/data' Making install in emboss_doc make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' Making install in html make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/html' make[4]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/html' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/html/embassy/phylipnew" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/html/embassy/phylipnew" /usr/bin/install -c -m 644 index.html fclique.html fconsense.html fcontml.html fcontrast.html fdiscboot.html fdnacomp.html fdnadist.html fdnainvar.html fdnaml.html fdnamlk.html fdnamove.html fdnapars.html fdnapenny.html fdollop.html fdolmove.html fdolpenny.html fdrawgram.html fdrawtree.html ffactor.html ffitch.html ffreqboot.html fgendist.html fkitsch.html fmix.html fmove.html fneighbor.html fpars.html fpenny.html fproml.html fpromlk.html fprotdist.html fprotpars.html frestboot.html frestdist.html frestml.html fretree.html fseqboot.html fseqbootall.html ftreedist.html '/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/html/embassy/phylipnew' /usr/bin/install -c -m 644 ftreedistpair.html '/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/html/embassy/phylipnew' make[4]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/html' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/html' Making install in text make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/text' make[4]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/text' make[4]: Nothing to be done for `install-exec-am'. test -z "/usr/share/EMBOSS/doc/programs/text" || /bin/mkdir -p "/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/programs/text" /usr/bin/install -c -m 644 fclique.txt fconsense.txt fcontml.txt fcontrast.txt fdiscboot.txt fdnacomp.txt fdnadist.txt fdnainvar.txt fdnaml.txt fdnamlk.txt fdnamove.txt fdnapars.txt fdnapenny.txt fdollop.txt fdolmove.txt fdolpenny.txt fdrawgram.txt fdrawtree.txt ffactor.txt ffitch.txt ffreqboot.txt fgendist.txt fkitsch.txt fmix.txt fmove.txt fneighbor.txt fpars.txt fpenny.txt fproml.txt fpromlk.txt fprotdist.txt fprotpars.txt frestboot.txt frestdist.txt frestml.txt fretree.txt fseqboot.txt fseqbootall.txt ftreedist.txt ftreedistpair.txt '/build/buildd/embassy-phylip-3.69+20100721/debian/embassy-phylip//usr/share/EMBOSS/doc/programs/text' make[4]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/text' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc/text' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[4]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721/emboss_doc' make[2]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721' make[3]: Entering directory `/build/buildd/embassy-phylip-3.69+20100721' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721' make[2]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721' make[1]: Leaving directory `/build/buildd/embassy-phylip-3.69+20100721' touch debian/stamp-makefile-install Adding cdbs dependencies to debian/embassy-phylip.substvars dh_installdirs -pembassy-phylip dh_installdocs -pembassy-phylip ./README ./AUTHORS dh_installexamples -pembassy-phylip dh_installman -pembassy-phylip dh_installinfo -pembassy-phylip dh_installmenu -pembassy-phylip dh_installcron -pembassy-phylip dh_installinit -pembassy-phylip Duplicate specification "O=s" for option "O" dh_installdebconf -pembassy-phylip dh_installemacsen -pembassy-phylip dh_installcatalogs -pembassy-phylip dh_installpam -pembassy-phylip dh_installlogrotate -pembassy-phylip dh_installlogcheck -pembassy-phylip dh_installchangelogs -pembassy-phylip dh_installudev -pembassy-phylip dh_lintian -pembassy-phylip dh_install -pembassy-phylip dh_link -pembassy-phylip dh_installmime -pembassy-phylip dh_strip -pembassy-phylip dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: embassy-phylip dh_strip debug symbol extraction: packages to act on: embassy-phylip dh_strip debug symbol extraction: ignored packages: WARNING: not running pkgbinarymangler for this package, as requested dpkg-deb: building package `embassy-phylip-dbgsym' in `../embassy-phylip-dbgsym_3.69+20100721-2_amd64.ddeb'. dh_compress -pembassy-phylip dh_fixperms -pembassy-phylip dh_makeshlibs -pembassy-phylip dh_installdeb -pembassy-phylip dh_perl -pembassy-phylip dh_shlibdeps -pembassy-phylip dpkg-shlibdeps: warning: dependency on libensembl.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libepcre.so.7 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libeplplot.so.3 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxdb.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dpkg-shlibdeps: warning: dependency on libajaxg.so.6 could be avoided if "debian/embassy-phylip/usr/bin/fdiscboot debian/embassy-phylip/usr/bin/fclique debian/embassy-phylip/usr/bin/fdrawgram debian/embassy-phylip/usr/bin/fcontml debian/embassy-phylip/usr/bin/fdnamlk debian/embassy-phylip/usr/bin/fdnapenny debian/embassy-phylip/usr/bin/frestml debian/embassy-phylip/usr/bin/fdnadist debian/embassy-phylip/usr/bin/fdolpenny debian/embassy-phylip/usr/bin/fneighbor debian/embassy-phylip/usr/bin/frestboot debian/embassy-phylip/usr/bin/fdnamove debian/embassy-phylip/usr/bin/ftreedist debian/embassy-phylip/usr/bin/fseqboot debian/embassy-phylip/usr/bin/fdolmove debian/embassy-phylip/usr/bin/ftreedistpair debian/embassy-phylip/usr/bin/fkitsch debian/embassy-phylip/usr/bin/fprotdist debian/embassy-phylip/usr/bin/fdnainvar debian/embassy-phylip/usr/bin/fpromlk debian/embassy-phylip/usr/bin/fconsense debian/embassy-phylip/usr/bin/fretree debian/embassy-phylip/usr/bin/ffactor debian/embassy-phylip/usr/bin/ffitch debian/embassy-phylip/usr/bin/fproml debian/embassy-phylip/usr/bin/ffreqboot debian/embassy-phylip/usr/bin/fdrawtree debian/embassy-phylip/usr/bin/fdnacomp debian/embassy-phylip/usr/bin/fpars debian/embassy-phylip/usr/bin/fdnapars debian/embassy-phylip/usr/bin/fdollop debian/embassy-phylip/usr/bin/fpenny debian/embassy-phylip/usr/bin/fgendist debian/embassy-phylip/usr/bin/fcontrast debian/embassy-phylip/usr/bin/fseqbootall debian/embassy-phylip/usr/bin/fdnaml debian/embassy-phylip/usr/bin/frestdist debian/embassy-phylip/usr/bin/fprotpars debian/embassy-phylip/usr/bin/fmix debian/embassy-phylip/usr/bin/fmove" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -pembassy-phylip # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/embassy-phylip/usr/share/doc ] || \ [ -h debian/embassy-phylip/usr/share/doc/embassy-phylip ] || \ [ ! -d debian/embassy-phylip/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/embassy-phylip/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/embassy-phylip/usr/share/doc/embassy-phylip; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/embassy-phylip/usr/share/doc/embassy-phylip/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in embassy-phylip to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/embassy-phylip/usr/share/gnome/help ]; then \ cd debian/embassy-phylip && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p embassy-phylip dh_md5sums -pembassy-phylip dh_builddeb -pembassy-phylip INFO: pkgstriptranslations version 77 pkgstriptranslations: processing control file: ./debian/embassy-phylip/DEBIAN/control, package embassy-phylip, directory ./debian/embassy-phylip pkgstriptranslations: embassy-phylip does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/embassy-phylip/DEBIAN/control, package embassy-phylip, directory debian/embassy-phylip dpkg-deb: warning: 'debian/embassy-phylip/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `embassy-phylip' in `../embassy-phylip_3.69+20100721-2_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../embassy-phylip_3.69+20100721-2_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build embassy-phylip-3.69+20100721 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20101018-0756 Publishing debug debs. chroot-autobuild/build/buildd/embassy-phylip_3.69+20100721-2_amd64.deb: new debian package, version 2.0. size 2783886 bytes: control archive= 6545 bytes. 1375 bytes, 26 lines control 15346 bytes, 213 lines md5sums Package: embassy-phylip Version: 3.69+20100721-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 7468 Depends: emboss-lib (>= 6.3.1-6~), libc6 (>= 2.7), libx11-6, libxaw7, libxt6, emboss-lib (<< 6.3.2~) Section: non-free/science Priority: optional Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#PHYLIPNEW Description: EMBOSS conversions of the programs in the phylip package This package is the adaptation of the PHYLIP package in which its programs can operate with the biological sequence formats and databases of the European Molecular Biology Open Software Suite (EMBOSS). The software packages adapted for EMBOSS are called EMBASSY. . PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees). Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters. . The EMBASSY PHYLIP programs all have the prefix "f" to distinguish them from the original programs and avoid namespace conflict. chroot-autobuild/build/buildd/embassy-phylip_3.69+20100721-2_amd64.deb: drwxr-xr-x root/root 0 2010-10-18 07:56 ./ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/doc/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ -rw-r--r-- root/root 45239 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fprotpars.html -rw-r--r-- root/root 26015 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fgendist.html -rw-r--r-- root/root 22987 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdrawtree.html -rw-r--r-- root/root 45603 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamlk.html -rw-r--r-- root/root 27131 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fkitsch.html -rw-r--r-- root/root 26553 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestdist.html -rw-r--r-- root/root 29745 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fmix.html -rw-r--r-- root/root 41568 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fpromlk.html -rw-r--r-- root/root 22858 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdolmove.html -rw-r--r-- root/root 21902 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fneighbor.html -rw-r--r-- root/root 36389 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fprotdist.html -rw-r--r-- root/root 22394 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnamove.html -rw-r--r-- root/root 34370 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fseqboot.html -rw-r--r-- root/root 25579 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fcontrast.html -rw-r--r-- root/root 31111 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnapars.html -rw-r--r-- root/root 18281 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fclique.html -rw-r--r-- root/root 23373 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestml.html -rw-r--r-- root/root 29996 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnainvar.html -rw-r--r-- root/root 24738 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ftreedist.html -rw-r--r-- root/root 36393 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnadist.html -rw-r--r-- root/root 29854 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdiscboot.html -rw-r--r-- root/root 18220 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fmove.html -rw-r--r-- root/root 29813 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnacomp.html -rw-r--r-- root/root 50465 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnaml.html -rw-r--r-- root/root 35331 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fseqbootall.html -rw-r--r-- root/root 36900 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdolpenny.html -rw-r--r-- root/root 37471 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdnapenny.html -rw-r--r-- root/root 28431 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fpars.html -rw-r--r-- root/root 35315 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ffreqboot.html -rw-r--r-- root/root 20011 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fretree.html -rw-r--r-- root/root 21854 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fconsense.html -rw-r--r-- root/root 42671 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fproml.html -rw-r--r-- root/root 24540 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdrawgram.html -rw-r--r-- root/root 25242 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ftreedistpair.html -rw-r--r-- root/root 5757 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/index.html -rw-r--r-- root/root 36506 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fpenny.html -rw-r--r-- root/root 28110 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fdollop.html -rw-r--r-- root/root 21839 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ffactor.html -rw-r--r-- root/root 35315 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/frestboot.html -rw-r--r-- root/root 32949 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/fcontml.html -rw-r--r-- root/root 22115 2010-10-18 07:56 ./usr/share/EMBOSS/doc/html/embassy/phylipnew/ffitch.html drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/ -rw-r--r-- root/root 16581 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/ftreedist.txt -rw-r--r-- root/root 10595 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdrawtree.txt -rw-r--r-- root/root 23379 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fseqboot.txt -rw-r--r-- root/root 13736 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdolmove.txt -rw-r--r-- root/root 14021 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fconsense.txt -rw-r--r-- root/root 11461 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdrawgram.txt -rw-r--r-- root/root 13252 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/frestml.txt -rw-r--r-- root/root 31295 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnamlk.txt -rw-r--r-- root/root 17312 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/ftreedistpair.txt -rw-r--r-- root/root 27906 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdolpenny.txt -rw-r--r-- root/root 17702 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/frestdist.txt -rw-r--r-- root/root 35829 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnaml.txt -rw-r--r-- root/root 25389 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnapenny.txt -rw-r--r-- root/root 9773 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fclique.txt -rw-r--r-- root/root 30122 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fprotpars.txt -rw-r--r-- root/root 28047 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fproml.txt -rw-r--r-- root/root 18205 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fcontrast.txt -rw-r--r-- root/root 18921 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fgendist.txt -rw-r--r-- root/root 17364 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnacomp.txt -rw-r--r-- root/root 13286 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fneighbor.txt -rw-r--r-- root/root 13631 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/ffactor.txt -rw-r--r-- root/root 23343 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/ffreqboot.txt -rw-r--r-- root/root 19602 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fmix.txt -rw-r--r-- root/root 24757 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fcontml.txt -rw-r--r-- root/root 23489 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fprotdist.txt -rw-r--r-- root/root 24011 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnadist.txt -rw-r--r-- root/root 23959 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fseqbootall.txt -rw-r--r-- root/root 27165 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fpenny.txt -rw-r--r-- root/root 19396 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnainvar.txt -rw-r--r-- root/root 18298 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnapars.txt -rw-r--r-- root/root 12785 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/ffitch.txt -rw-r--r-- root/root 11170 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdnamove.txt -rw-r--r-- root/root 18571 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fpars.txt -rw-r--r-- root/root 27111 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fpromlk.txt -rw-r--r-- root/root 19022 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdollop.txt -rw-r--r-- root/root 23343 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/frestboot.txt -rw-r--r-- root/root 18441 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fkitsch.txt -rw-r--r-- root/root 20433 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fdiscboot.txt -rw-r--r-- root/root 12106 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fretree.txt -rw-r--r-- root/root 9698 2010-10-18 07:56 ./usr/share/EMBOSS/doc/programs/text/fmove.txt drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/EMBOSS/acd/ -rw-r--r-- root/root 1641 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fgendist.acd -rw-r--r-- root/root 2789 2010-10-18 07:56 ./usr/share/EMBOSS/acd/frestdist.acd -rw-r--r-- root/root 4380 2010-10-18 07:56 ./usr/share/EMBOSS/acd/ffitch.acd -rw-r--r-- root/root 4039 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fdolpenny.acd -rw-r--r-- root/root 3262 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fdolmove.acd -rw-r--r-- root/root 2394 2010-10-18 07:56 ./usr/share/EMBOSS/acd/ftreedistpair.acd -rw-r--r-- root/root 3397 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fclique.acd -rw-r--r-- root/root 2237 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fcontrast.acd -rw-r--r-- root/root 8119 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fproml.acd -rw-r--r-- root/root 3426 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fneighbor.acd -rw-r--r-- root/root 3652 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fkitsch.acd -rw-r--r-- root/root 2675 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fdnamove.acd -rw-r--r-- root/root 4554 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fprotpars.acd -rw-r--r-- root/root 3576 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fcontml.acd -rw-r--r-- root/root 3377 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fmove.acd -rw-r--r-- root/root 4323 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fseqboot.acd -rw-r--r-- root/root 2780 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fconsense.acd -rw-r--r-- root/root 4549 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fmix.acd -rw-r--r-- root/root 3649 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fdnapenny.acd -rw-r--r-- root/root 4056 2010-10-18 07:56 ./usr/share/EMBOSS/acd/frestml.acd -rw-r--r-- root/root 1876 2010-10-18 07:56 ./usr/share/EMBOSS/acd/ffactor.acd -rw-r--r-- root/root 4941 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fdnapars.acd -rw-r--r-- root/root 2181 2010-10-18 07:56 ./usr/share/EMBOSS/acd/ftreedist.acd -rw-r--r-- root/root 4078 2010-10-18 07:56 ./usr/share/EMBOSS/acd/frestboot.acd -rw-r--r-- root/root 7851 2010-10-18 07:56 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7286 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fdrawtree.acd -rw-r--r-- root/root 6199 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fseqbootall.acd -rw-r--r-- root/root 8485 2010-10-18 07:56 ./usr/share/EMBOSS/acd/fdnaml.acd drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/doc/embassy-phylip/ -rw-r--r-- root/root 671 2009-09-15 17:58 ./usr/share/doc/embassy-phylip/AUTHORS -rw-r--r-- root/root 2257 2010-10-18 07:55 ./usr/share/doc/embassy-phylip/copyright -rw-r--r-- root/root 1861 2009-09-15 17:58 ./usr/share/doc/embassy-phylip/ChangeLog -rw-r--r-- root/root 3793 2009-09-15 17:58 ./usr/share/doc/embassy-phylip/README -rw-r--r-- root/root 713 2010-10-18 07:55 ./usr/share/doc/embassy-phylip/changelog.Debian.gz drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/lintian/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 3528 2010-10-18 07:55 ./usr/share/lintian/overrides/embassy-phylip drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/PHYLIPNEW/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/PHYLIPNEW/data/ -rw-r--r-- root/root 11297 2010-10-18 07:56 ./usr/share/PHYLIPNEW/data/font4 -rw-r--r-- root/root 5934 2010-10-18 07:56 ./usr/share/PHYLIPNEW/data/font1 -rw-r--r-- root/root 14314 2010-10-18 07:56 ./usr/share/PHYLIPNEW/data/font6 -rw-r--r-- root/root 16886 2010-10-18 07:56 ./usr/share/PHYLIPNEW/data/font5 -rw-r--r-- root/root 16985 2010-10-18 07:56 ./usr/share/PHYLIPNEW/data/font3 -rw-r--r-- root/root 11288 2010-10-18 07:56 ./usr/share/PHYLIPNEW/data/font2 drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/man/ drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/share/man/man1/ -rw-r--r-- root/root 1214 2010-10-18 07:56 ./usr/share/man/man1/ftreedist.1e.gz -rw-r--r-- root/root 1287 2010-10-18 07:56 ./usr/share/man/man1/fclique.1e.gz -rw-r--r-- root/root 1341 2010-10-18 07:56 ./usr/share/man/man1/ffreqboot.1e.gz -rw-r--r-- root/root 1356 2010-10-18 07:56 ./usr/share/man/man1/fmove.1e.gz -rw-r--r-- root/root 1240 2010-10-18 07:56 ./usr/share/man/man1/fdnainvar.1e.gz -rw-r--r-- root/root 1315 2010-10-18 07:56 ./usr/share/man/man1/fdnamove.1e.gz -rw-r--r-- root/root 1186 2010-10-18 07:56 ./usr/share/man/man1/ffactor.1e.gz -rw-r--r-- root/root 1319 2010-10-18 07:56 ./usr/share/man/man1/fneighbor.1e.gz -rw-r--r-- root/root 1430 2010-10-18 07:56 ./usr/share/man/man1/ffitch.1e.gz -rw-r--r-- root/root 1407 2010-10-18 07:56 ./usr/share/man/man1/frestboot.1e.gz -rw-r--r-- root/root 1246 2010-10-18 07:56 ./usr/share/man/man1/fcontrast.1e.gz -rw-r--r-- root/root 1424 2010-10-18 07:56 ./usr/share/man/man1/fprotdist.1e.gz -rw-r--r-- root/root 1427 2010-10-18 07:56 ./usr/share/man/man1/fprotpars.1e.gz -rw-r--r-- root/root 1643 2010-10-18 07:56 ./usr/share/man/man1/fdnamlk.1e.gz -rw-r--r-- root/root 1428 2010-10-18 07:56 ./usr/share/man/man1/fmix.1e.gz -rw-r--r-- root/root 1355 2010-10-18 07:56 ./usr/share/man/man1/fdolmove.1e.gz -rw-r--r-- root/root 1216 2010-10-18 07:56 ./usr/share/man/man1/fretree.1e.gz -rw-r--r-- root/root 1532 2010-10-18 07:56 ./usr/share/man/man1/fdrawgram.1e.gz -rw-r--r-- root/root 1640 2010-10-18 07:56 ./usr/share/man/man1/fproml.1e.gz -rw-r--r-- root/root 1414 2010-10-18 07:56 ./usr/share/man/man1/fdollop.1e.gz -rw-r--r-- root/root 1362 2010-10-18 07:56 ./usr/share/man/man1/fcontml.1e.gz -rw-r--r-- root/root 1462 2010-10-18 07:56 ./usr/share/man/man1/fdnapars.1e.gz -rw-r--r-- root/root 1415 2010-10-18 07:56 ./usr/share/man/man1/fdolpenny.1e.gz -rw-r--r-- root/root 1437 2010-10-18 07:56 ./usr/share/man/man1/fpenny.1e.gz -rw-r--r-- root/root 1410 2010-10-18 07:56 ./usr/share/man/man1/frestml.1e.gz -rw-r--r-- root/root 1378 2010-10-18 07:56 ./usr/share/man/man1/fseqboot.1e.gz -rw-r--r-- root/root 1392 2010-10-18 07:56 ./usr/share/man/man1/fkitsch.1e.gz -rw-r--r-- root/root 1498 2010-10-18 07:56 ./usr/share/man/man1/fdnadist.1e.gz -rw-r--r-- root/root 1430 2010-10-18 07:56 ./usr/share/man/man1/fdiscboot.1e.gz -rw-r--r-- root/root 1321 2010-10-18 07:56 ./usr/share/man/man1/frestdist.1e.gz -rw-r--r-- root/root 1340 2010-10-18 07:56 ./usr/share/man/man1/fdnacomp.1e.gz -rw-r--r-- root/root 1462 2010-10-18 07:56 ./usr/share/man/man1/fpars.1e.gz -rw-r--r-- root/root 1500 2010-10-18 07:56 ./usr/share/man/man1/fdrawtree.1e.gz -rw-r--r-- root/root 1617 2010-10-18 07:56 ./usr/share/man/man1/fpromlk.1e.gz -rw-r--r-- root/root 1382 2010-10-18 07:56 ./usr/share/man/man1/fdnapenny.1e.gz -rw-r--r-- root/root 1279 2010-10-18 07:56 ./usr/share/man/man1/fconsense.1e.gz -rw-r--r-- root/root 1229 2010-10-18 07:56 ./usr/share/man/man1/ftreedistpair.1e.gz -rw-r--r-- root/root 1675 2010-10-18 07:56 ./usr/share/man/man1/fdnaml.1e.gz -rw-r--r-- root/root 1471 2010-10-18 07:56 ./usr/share/man/man1/fseqbootall.1e.gz -rw-r--r-- root/root 1196 2010-10-18 07:56 ./usr/share/man/man1/fgendist.1e.gz drwxr-xr-x root/root 0 2010-10-18 07:56 ./usr/bin/ -rwxr-xr-x root/root 76328 2010-10-18 07:56 ./usr/bin/ffitch -rwxr-xr-x root/root 59912 2010-10-18 07:56 ./usr/bin/fgendist -rwxr-xr-x root/root 167968 2010-10-18 07:56 ./usr/bin/fpromlk -rwxr-xr-x root/root 141960 2010-10-18 07:56 ./usr/bin/fdnapars -rwxr-xr-x root/root 125472 2010-10-18 07:56 ./usr/bin/fdnainvar -rwxr-xr-x root/root 133704 2010-10-18 07:56 ./usr/bin/fdnadist -rwxr-xr-x root/root 145992 2010-10-18 07:56 ./usr/bin/fdnamove -rwxr-xr-x root/root 172064 2010-10-18 07:56 ./usr/bin/fproml -rwxr-xr-x root/root 133688 2010-10-18 07:56 ./usr/bin/fdiscboot -rwxr-xr-x root/root 133800 2010-10-18 07:56 ./usr/bin/fdnacomp -rwxr-xr-x root/root 68120 2010-10-18 07:56 ./usr/bin/fneighbor -rwxr-xr-x root/root 133696 2010-10-18 07:56 ./usr/bin/ffreqboot -rwxr-xr-x root/root 76320 2010-10-18 07:56 ./usr/bin/fkitsch -rwxr-xr-x root/root 125480 2010-10-18 07:56 ./usr/bin/fpars -rwxr-xr-x root/root 100888 2010-10-18 07:56 ./usr/bin/fmove -rwxr-xr-x root/root 100904 2010-10-18 07:56 ./usr/bin/fdolmove -rwxr-xr-x root/root 121376 2010-10-18 07:56 ./usr/bin/frestdist -rwxr-xr-x root/root 88640 2010-10-18 07:56 ./usr/bin/ftreedist -rwxr-xr-x root/root 150144 2010-10-18 07:56 ./usr/bin/fdnamlk -rwxr-xr-x root/root 96776 2010-10-18 07:56 ./usr/bin/fretree -rwxr-xr-x root/root 150064 2010-10-18 07:56 ./usr/bin/frestml -rwxr-xr-x root/root 133720 2010-10-18 07:56 ./usr/bin/fseqboot -rwxr-xr-x root/root 141920 2010-10-18 07:56 ./usr/bin/fseqbootall -rwxr-xr-x root/root 84528 2010-10-18 07:56 ./usr/bin/fcontml -rwxr-xr-x root/root 88624 2010-10-18 07:56 ./usr/bin/fdollop -rwxr-xr-x root/root 88608 2010-10-18 07:56 ./usr/bin/fpenny -rwxr-xr-x root/root 88600 2010-10-18 07:56 ./usr/bin/fclique -rwxr-xr-x root/root 141920 2010-10-18 07:56 ./usr/bin/fprotpars -rwxr-xr-x root/root 92728 2010-10-18 07:56 ./usr/bin/fmix -rwxr-xr-x root/root 80472 2010-10-18 07:56 ./usr/bin/fconsense -rwxr-xr-x root/root 126048 2010-10-18 07:56 ./usr/bin/fdnapenny -rwxr-xr-x root/root 158320 2010-10-18 07:56 ./usr/bin/fdnaml -rwxr-xr-x root/root 146008 2010-10-18 07:56 ./usr/bin/fprotdist -rwxr-xr-x root/root 72192 2010-10-18 07:56 ./usr/bin/fcontrast -rwxr-xr-x root/root 88640 2010-10-18 07:56 ./usr/bin/ftreedistpair -rwxr-xr-x root/root 84520 2010-10-18 07:56 ./usr/bin/fdolpenny -rwxr-xr-x root/root 179712 2010-10-18 07:56 ./usr/bin/fdrawtree -rwxr-xr-x root/root 59920 2010-10-18 07:56 ./usr/bin/ffactor -rwxr-xr-x root/root 133688 2010-10-18 07:56 ./usr/bin/frestboot -rwxr-xr-x root/root 159200 2010-10-18 07:56 ./usr/bin/fdrawgram embassy-phylip_3.69+20100721-2_amd64.changes: Format: 1.8 Date: Thu, 23 Sep 2010 14:07:26 +0900 Source: embassy-phylip Binary: embassy-phylip Architecture: amd64 Version: 3.69+20100721-2 Distribution: natty Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Charles Plessy Description: embassy-phylip - EMBOSS conversions of the programs in the phylip package Changes: embassy-phylip (3.69+20100721-2) unstable; urgency=low . * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions lower than 6.3.2, because backwards compatibility is sometimes broken (debian/control, debian/rules). * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private libraries (debian/rules, debian/embassy-phylip.lintian-overrides). * Refreshed debian/copyright to test the latest DEP-5 format. Checksums-Sha1: d619167650671be01f250c804a582206d6c42929 2783886 embassy-phylip_3.69+20100721-2_amd64.deb Checksums-Sha256: 1041e674306b7156a3e0056da08ff47339cfa22848a56e3fa34547ba5dd41fa3 2783886 embassy-phylip_3.69+20100721-2_amd64.deb Files: 4791df4357e7df1cca51c3fc61fca017 2783886 non-free/science optional embassy-phylip_3.69+20100721-2_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/embassy-phylip-3.69+20100721 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge libxmu6 groff-base libx11-data m4 libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libxaw7 libhtml-parser-perl libgd2-xpm libkadm5clnt-mit7 liburi-perl libxpm4 x11-common autotools-dev libx11-dev libcroco3 libxt-dev libpopt0 libkdb5-4 libxaw7-dev libmysqlclient16 libfreetype6 automake libjpeg62 libice-dev libpq5 libfreetype6-dev libgd2-xpm-dev libxcb1 x11proto-input-dev libexpat1-dev html2text libjpeg62-dev libpthread-stubs0 debhelper libfontconfig1 libhpdf-2.1.0 libxpm-dev libmagic1 libexpat1 libssl-dev bsdmainutils libxau6 fdupes libx11-6 mysql-common xtrans-dev x11proto-core-dev intltool libxcb1-dev libxt6 libwww-perl libxdmcp6 libxmu-dev comerr-dev libpq-dev libhtml-tree-perl po-debconf emboss-lib libxml-parser-perl libkrb5-dev libhtml-tagset-perl libxml2 x11proto-xext-dev pkg-config krb5-multidev man-db libice6 x11proto-kb-dev intltool-debian libfontconfig1-dev libxext-dev libpthread-stubs0-dev ucf cdbs libxau-dev libxmu-headers gettext-base libmysqlclient-dev libpng12-dev libunistring0 libsm6 libxext6 libkadm5srv-mit7 libgssrpc4 libsm-dev autoconf (Reading database ... 20654 files and directories currently installed.) Removing libxaw7-dev ... Removing libgd2-xpm-dev ... Removing libjpeg62-dev ... Removing libxpm-dev ... Removing libxmu-dev ... Removing libpq-dev ... Removing emboss-lib ... Purging configuration files for emboss-lib ... Removing libkrb5-dev ... Removing krb5-multidev ... Removing libfontconfig1-dev ... Removing libxext-dev ... Removing cdbs ... Removing libxmu-headers ... Removing libmysqlclient-dev ... Removing libpng12-dev ... Removing libkadm5srv-mit7 ... Purging configuration files for libkadm5srv-mit7 ... Removing libxaw7 ... Purging configuration files for libxaw7 ... Removing libgd2-xpm ... Purging configuration files for libgd2-xpm ... Removing libkadm5clnt-mit7 ... Purging configuration files for libkadm5clnt-mit7 ... Removing libxpm4 ... Purging configuration files for libxpm4 ... Removing libxt-dev ... Removing libkdb5-4 ... Purging configuration files for libkdb5-4 ... Removing libmysqlclient16 ... Purging configuration files for libmysqlclient16 ... Removing libjpeg62 ... Removing libpq5 ... Purging configuration files for libpq5 ... Removing libfreetype6-dev ... Removing libexpat1-dev ... Removing debhelper ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libhpdf-2.1.0 ... Purging configuration files for libhpdf-2.1.0 ... Removing libssl-dev ... Removing fdupes ... Removing mysql-common ... Purging configuration files for mysql-common ... Removing intltool ... Removing comerr-dev ... Removing po-debconf ... Removing libxml-parser-perl ... Removing x11proto-xext-dev ... Removing pkg-config ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing libgssrpc4 ... Purging configuration files for libgssrpc4 ... Removing libsm-dev ... Removing libxmu6 ... Purging configuration files for libxmu6 ... Removing groff-base ... Purging configuration files for groff-base ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing zlib1g-dev ... Removing libx11-dev ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing automake ... Removing libice-dev ... Removing x11proto-input-dev ... Removing html2text ... Purging configuration files for html2text ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libwww-perl ... Removing libhtml-tree-perl ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing libxdmcp-dev ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing autotools-dev ... Removing libpthread-stubs0 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing x11proto-core-dev ... Removing libhtml-tagset-perl ... Removing libice6 ... Purging configuration files for libice6 ... Removing libx11-data ... Removing x11-common ... Purging configuration files for x11-common ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20101018-0757 Build needed 00:00:58, 38816k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'eeb19dc97a78cc4feb4691d28929d54c63bac167'] Scanning for processes to kill in build /home/buildd/build-eeb19dc97a78cc4feb4691d28929d54c63bac167/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'eeb19dc97a78cc4feb4691d28929d54c63bac167'] Unmounting chroot for build eeb19dc97a78cc4feb4691d28929d54c63bac167... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'eeb19dc97a78cc4feb4691d28929d54c63bac167'] Removing build eeb19dc97a78cc4feb4691d28929d54c63bac167